BLASTX nr result
ID: Ephedra27_contig00013987
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00013987
(1448 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE77866.1| unknown [Picea sitchensis] 457 e-126
ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-lik... 401 e-109
gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [... 397 e-108
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik... 396 e-107
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like ... 392 e-106
gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [... 390 e-106
ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi... 390 e-105
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin... 387 e-105
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula] 385 e-104
ref|XP_006858556.1| hypothetical protein AMTR_s00071p00170380 [A... 384 e-104
ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutr... 384 e-104
ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Popu... 382 e-103
gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus... 380 e-103
ref|NP_172451.2| pseudouridine synthase family protein [Arabidop... 380 e-103
dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] g... 380 e-103
gb|AAT06466.1| At1g09800 [Arabidopsis thaliana] 380 e-103
ref|XP_006305124.1| hypothetical protein CARUB_v10009493mg [Caps... 379 e-102
ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like ... 379 e-102
ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik... 379 e-102
ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arab... 379 e-102
>gb|ADE77866.1| unknown [Picea sitchensis]
Length = 382
Score = 457 bits (1176), Expect = e-126
Identities = 234/357 (65%), Positives = 269/357 (75%), Gaps = 4/357 (1%)
Frame = +3
Query: 87 GVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHAL 266
GVQRYLVA++Y GTNFAG QKQP RTVQGVLEDAF KF+GQPVSS SSRTD GVHAL
Sbjct: 27 GVQRYLVAVDYIGTNFAGMQKQPN-FRTVQGVLEDAFNKFIGQPVSSASSSRTDAGVHAL 85
Query: 267 MNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHARFR 446
NV HVD+ERISKR PGEVLPPHEP++V++AVNHFLQK GD+ I+DV+ VPM FHAR+R
Sbjct: 86 TNVCHVDVERISKRKPGEVLPPHEPEVVKRAVNHFLQKDAGDISIIDVRFVPMTFHARYR 145
Query: 447 AQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQA 626
AQERTY+YRILSG++PLS+FEKD+AWHV EDL L MQEAC++LVGHHDFSSFRA+GCQA
Sbjct: 146 AQERTYYYRILSGKEPLSIFEKDRAWHVPEDLGLSCMQEACKVLVGHHDFSSFRASGCQA 205
Query: 627 KSPIKTLDELFVCEMPTWPNFSPCM----TANASAAVERKVSISTTERIGDSDSSAVVER 794
KSPIK LDEL VCEMP WP F + N SA + VS +E D+ +E
Sbjct: 206 KSPIKILDELRVCEMPAWPAFPMSIDRTSRVNISATSCKHVS---SEGKASFDNPVEMEG 262
Query: 795 NRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVKLL 974
F +LCQ NG+ FG ++GHRGYVVVARA+SFLYHQV+LL
Sbjct: 263 QVSLSKERFMNHGQPDMLCQEENGNFGQDEVLEFGHRRGHRGYVVVARAQSFLYHQVRLL 322
Query: 975 VGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYDFRCDGTEKSND 1145
VGTLK VGTGK+S DDVE ILKARTIT APPMAP+CGLYLA VKYDF C+ + D
Sbjct: 323 VGTLKCVGTGKLSVDDVESILKARTITVAPPMAPACGLYLAAVKYDFSCNDVNQMED 379
>ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X1 [Cicer
arietinum]
Length = 374
Score = 401 bits (1030), Expect = e-109
Identities = 210/349 (60%), Positives = 254/349 (72%), Gaps = 8/349 (2%)
Frame = +3
Query: 90 VQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALM 269
+QRYLVAIEY GT+F+GSQKQ T RTV GVLE+AF KFVGQPVS + SSRTD GVHAL
Sbjct: 54 IQRYLVAIEYIGTHFSGSQKQLTD-RTVVGVLEEAFCKFVGQPVSVICSSRTDAGVHALS 112
Query: 270 NVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHARFRA 449
NV HVD+ERISKR PGEVLPPHEP +VR+AVNHFLQK GD+M++DV+ VP DFHAR++A
Sbjct: 113 NVCHVDIERISKRKPGEVLPPHEPVVVRRAVNHFLQKQNGDLMVIDVRCVPSDFHARYKA 172
Query: 450 QERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAK 629
QERTYFYR+LSG +PLS EKD+AWHV E+L+LP MQEACR+LVGHHDFSSFRAAGCQAK
Sbjct: 173 QERTYFYRLLSGSEPLSTLEKDRAWHVPEELNLPAMQEACRVLVGHHDFSSFRAAGCQAK 232
Query: 630 SPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSI--------STTERIGDSDSSAV 785
SPI+TLDEL V E+ P F M ER++ + S E + SSA
Sbjct: 233 SPIRTLDELSVVEVIQSPYFPSVMDR------ERQIKVADDLHGCGSNAEAVIPVSSSAR 286
Query: 786 VERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQV 965
+++ R + + G GFG+++ HR VV ARAR+FLYHQV
Sbjct: 287 IDKVRASNE------------------------GVGFGKRRYHRCLVVTARARAFLYHQV 322
Query: 966 KLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1112
+LLVG LK+VGTG ++ DVE+IL A+T+T+A PMAP+CGLYL EVKYD
Sbjct: 323 RLLVGVLKAVGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYD 371
>gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
Length = 374
Score = 397 bits (1020), Expect = e-108
Identities = 213/368 (57%), Positives = 260/368 (70%)
Frame = +3
Query: 21 EEPNKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFT 200
+E ++D + + ++ P +QRYLVAIEY GT F+GSQ+QP RTV GVLE+AF
Sbjct: 30 QEEEEEDKQQQESSMSKNPR---IQRYLVAIEYIGTRFSGSQQQPNC-RTVVGVLEEAFL 85
Query: 201 KFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQK 380
KF+GQPVS SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP +VR+AVNHFLQK
Sbjct: 86 KFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQK 145
Query: 381 AGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQ 560
+ GD+ ++DV+ VP DFHAR++AQERTYFYR+LSG +PLS FEK++AWHV E LDL MQ
Sbjct: 146 SEGDITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQ 205
Query: 561 EACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVS 740
EAC++LVGHHDFSSFRAAGCQAKSPI+TLDEL V E P P F + E+K +
Sbjct: 206 EACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPTPYF--------PSISEKKQN 257
Query: 741 ISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRG 920
S+TE DS + + D+ D G S GI GFG ++ H
Sbjct: 258 NSSTE---DSHACSREPEIDLPIDSFSNSDDEVG---------SNGITDLGFGIRRRHHC 305
Query: 921 YVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAE 1100
YVV ARARSFLYHQV+LLVG LK VGTG+++ DVE+IL A+T+T+A PMAP+ GLYL
Sbjct: 306 YVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGC 365
Query: 1101 VKYDFRCD 1124
VKYD D
Sbjct: 366 VKYDLPRD 373
>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
vesca]
Length = 350
Score = 396 bits (1018), Expect = e-107
Identities = 214/376 (56%), Positives = 260/376 (69%), Gaps = 8/376 (2%)
Frame = +3
Query: 9 KRSLEEPNKDDHYLSKLART-----QEPPMS---GVQRYLVAIEYDGTNFAGSQKQPTTI 164
K SLE ++ SK+++T + MS G+QRYL+AIEY GT F+GSQ+Q +
Sbjct: 6 KHSLESRSQSPKRPSKISKTTSEEAEAESMSKPQGIQRYLIAIEYIGTRFSGSQQQ-SNC 64
Query: 165 RTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPD 344
RTV GVLE+AF KF+GQPVS SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP
Sbjct: 65 RTVVGVLEEAFRKFIGQPVSIFCSSRTDAGVHALSNVCHVDIERISKRKPGEVLPPHEPI 124
Query: 345 IVRKAVNHFLQKAGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAW 524
+V++AVNHFLQK GDVM+VDV+ VP DFHARF+AQERTYFYR+LSG +PLS FEKD+AW
Sbjct: 125 VVQRAVNHFLQKNEGDVMVVDVRSVPADFHARFKAQERTYFYRLLSGPEPLSTFEKDRAW 184
Query: 525 HVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMT 704
H+ E+LD+ MQEAC+ILVGHHDFSSFRAAGCQAKSPI+TLDEL V E+ + PNF P +
Sbjct: 185 HIPEELDVLAMQEACKILVGHHDFSSFRAAGCQAKSPIRTLDELNVSEVVSSPNF-PTIA 243
Query: 705 ANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGIN 884
V++ + + N +A NGG
Sbjct: 244 ERTRNLVQKDIQCT------------------NNPEADCHSSFNGG-------------T 272
Query: 885 GCGFGRKKGHRGYVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAP 1064
GFG +K HR VV ARAR+FLYHQV+LLVG LK VGTG + DVE+IL A+T+T+A
Sbjct: 273 DQGFGLRKKHRCIVVTARARAFLYHQVRLLVGVLKCVGTGDLKIPDVERILNAKTVTAAS 332
Query: 1065 PMAPSCGLYLAEVKYD 1112
PMAP+CGLYL V+YD
Sbjct: 333 PMAPACGLYLGHVRYD 348
>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Glycine max]
Length = 369
Score = 392 bits (1007), Expect = e-106
Identities = 212/347 (61%), Positives = 249/347 (71%), Gaps = 2/347 (0%)
Frame = +3
Query: 78 PMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGV 257
P +G+QRYLVAIEY GT F+GSQKQ +RTV G LE+AF+KFVGQPVS SSRTD GV
Sbjct: 44 PRNGIQRYLVAIEYIGTLFSGSQKQ-LNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGV 102
Query: 258 HALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHA 437
HAL NV HVD++RISKR PGEVLPPHEP +V +AVNHFLQK D+M++DV+ VP DFHA
Sbjct: 103 HALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHA 162
Query: 438 RFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAG 617
RF+AQERTYFYR+LSG +PLS FEKD+AWHV E+L LP MQEACR+LVG HDFSSFRAAG
Sbjct: 163 RFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAG 222
Query: 618 CQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERN 797
CQAKSPI+TLDEL V E+ P F M KVS GD S
Sbjct: 223 CQAKSPIRTLDELSVNEVIESPYFPSLMDREQ----HNKVS-------GDLRSC------ 265
Query: 798 RENFDATFTERDNGGILCQNPNGDSL--GINGCGFGRKKGHRGYVVVARARSFLYHQVKL 971
+ TE D I NP+ D + GFG+++ HR VV ARARSFLYHQV+L
Sbjct: 266 -----SNNTETDIPPI--SNPSIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRL 318
Query: 972 LVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1112
LVG LK+ GTG ++ DVE+IL A+T+T+A PMAP+CGLYL EVKYD
Sbjct: 319 LVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYD 365
>gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
Length = 373
Score = 390 bits (1003), Expect = e-106
Identities = 212/368 (57%), Positives = 258/368 (70%)
Frame = +3
Query: 21 EEPNKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFT 200
+E ++D + + ++ P +QRYLVAIEY GT F+GSQ+QP RTV GVLE+AF
Sbjct: 30 QEEEEEDKQQQESSMSKNPR---IQRYLVAIEYIGTRFSGSQQQPNC-RTVVGVLEEAFL 85
Query: 201 KFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQK 380
KF+GQPVS SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP +VR+AVNHFLQ
Sbjct: 86 KFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQS 145
Query: 381 AGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQ 560
G D+ ++DV+ VP DFHAR++AQERTYFYR+LSG +PLS FEK++AWHV E LDL MQ
Sbjct: 146 EG-DITVIDVRCVPNDFHARYKAQERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQ 204
Query: 561 EACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVS 740
EAC++LVGHHDFSSFRAAGCQAKSPI+TLDEL V E P P F + E+K +
Sbjct: 205 EACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPTPYF--------PSISEKKQN 256
Query: 741 ISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRG 920
S+TE DS + + D+ D G S GI GFG ++ H
Sbjct: 257 NSSTE---DSHACSREPEIDLPIDSFSNSDDEVG---------SNGITDLGFGIRRRHHC 304
Query: 921 YVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAE 1100
YVV ARARSFLYHQV+LLVG LK VGTG+++ DVE+IL A+T+T+A PMAP+ GLYL
Sbjct: 305 YVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGC 364
Query: 1101 VKYDFRCD 1124
VKYD D
Sbjct: 365 VKYDLPRD 372
>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
gi|297739525|emb|CBI29707.3| unnamed protein product
[Vitis vinifera]
Length = 380
Score = 390 bits (1001), Expect = e-105
Identities = 213/369 (57%), Positives = 257/369 (69%), Gaps = 4/369 (1%)
Frame = +3
Query: 18 LEEPNKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAF 197
L + + D SK TQ P VQRYLVA+EY GT F+GSQ+Q RTV G L++AF
Sbjct: 41 LSDGEQQDSVASK-TMTQNPR---VQRYLVAVEYIGTRFSGSQQQ-LNCRTVAGALQEAF 95
Query: 198 TKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQ 377
KF+GQPVS SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP +VR+AVNHFLQ
Sbjct: 96 HKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQ 155
Query: 378 KAGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKM 557
K GDVM++DV+ VP DFHAR++A+ERTYFYR+LSG +PLS FEKD+AWHV EDLDL M
Sbjct: 156 KNEGDVMVIDVRCVPPDFHARYKARERTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAM 215
Query: 558 QEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANA--SAAVER 731
Q+ACR+LVG HDFSSFRAAGCQAKSPI+TLDEL V E+ P F P +T A + E
Sbjct: 216 QKACRVLVGCHDFSSFRAAGCQAKSPIRTLDELCVSEVLPTPYF-PSITERAQNNFTEEN 274
Query: 732 KVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGINGC--GFGRK 905
++ S + DS S+A N + D G NG GFG +
Sbjct: 275 PLACSNNAEVPDSPSTA----NHDRLD---------------------GFNGAGQGFGVR 309
Query: 906 KGHRGYVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCG 1085
+ HR ++V ARARSFLYHQV+LLVG +K VGTG ++ DVE+IL A+T+T+A PMAP+CG
Sbjct: 310 RRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPACG 369
Query: 1086 LYLAEVKYD 1112
LYL V YD
Sbjct: 370 LYLGNVNYD 378
>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
gi|255637177|gb|ACU18919.1| unknown [Glycine max]
Length = 370
Score = 387 bits (995), Expect = e-105
Identities = 210/347 (60%), Positives = 246/347 (70%), Gaps = 2/347 (0%)
Frame = +3
Query: 78 PMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGV 257
P +G+QRYLVAIEY GT F+GSQKQ +RTV GVLE+AF+KFVGQPVS SSRT GV
Sbjct: 45 PRNGIQRYLVAIEYIGTRFSGSQKQ-LNVRTVVGVLEEAFSKFVGQPVSVSCSSRTVAGV 103
Query: 258 HALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHA 437
HAL NV HVD++RISKR PGEVL PHEP +V +AVNHFLQK D+M++DV+ VP DFHA
Sbjct: 104 HALSNVCHVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHA 163
Query: 438 RFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAG 617
RF+AQER YFYR+LSG +PLS FEKD+AWHV E+L LP MQEACR+LVG HDFSSFRAAG
Sbjct: 164 RFKAQERIYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAG 223
Query: 618 CQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERN 797
CQAKSPI+TLDEL V E+ P F M KVS GD S N
Sbjct: 224 CQAKSPIRTLDELSVNEVIESPYFPSLMDREQ----HNKVS-------GDLRSCP----N 268
Query: 798 RENFDATFTERDNGGILCQNPNGDSL--GINGCGFGRKKGHRGYVVVARARSFLYHQVKL 971
D T NP+ D + GFG+++ HR VV ARAR+FLYHQV+L
Sbjct: 269 NSETDIPPT---------SNPSIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYHQVRL 319
Query: 972 LVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1112
LVG LK+VGTG ++ DVE+IL ART+T+A PMAP+CGLYL EVKYD
Sbjct: 320 LVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLYLGEVKYD 366
>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
Length = 361
Score = 385 bits (990), Expect = e-104
Identities = 204/370 (55%), Positives = 257/370 (69%), Gaps = 6/370 (1%)
Frame = +3
Query: 21 EEPNKDDHYLSKLARTQEPPMSG-----VQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVL 185
EE + +++ SK+++ +E +QRYLVA+EY GT F G QKQ T RTV GVL
Sbjct: 13 EECSDNNNRPSKISKIEEEMNQHHHHRKIQRYLVAVEYIGTRFFGFQKQLTD-RTVAGVL 71
Query: 186 EDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVN 365
EDAF KFVGQPVS + SSRTD GVHAL NV HVD+ERISKR PGEVL PHEP +VR+AVN
Sbjct: 72 EDAFCKFVGQPVSVVCSSRTDAGVHALSNVCHVDIERISKRKPGEVLQPHEPAVVRRAVN 131
Query: 366 HFLQKAGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLD 545
HFLQK GD+ ++DV+ VP DFHAR++AQERTYFYR+LSG + LS FEKD+AWH+ E+L+
Sbjct: 132 HFLQKENGDLAVIDVRCVPSDFHARYKAQERTYFYRLLSGPETLSTFEKDRAWHIPEELN 191
Query: 546 LPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAV 725
LP MQEAC++LVGHHDFSSFRA+GCQAKSPI++LDEL V E+ P F M
Sbjct: 192 LPAMQEACKVLVGHHDFSSFRASGCQAKSPIRSLDELSVVEVTRSPYFPSVMDR------ 245
Query: 726 ERKVSISTTERIGDSDSSAVVE-RNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGR 902
E ++++ S+S V+ + D +++ GFG+
Sbjct: 246 ENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASKED-----------------VGFGK 288
Query: 903 KKGHRGYVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSC 1082
++ HR VV ARAR+FLYHQV+LLVG LK VGTG I+ DVE+IL A+T+T+ PMAP+C
Sbjct: 289 RRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTATSPMAPAC 348
Query: 1083 GLYLAEVKYD 1112
GLYL EVKYD
Sbjct: 349 GLYLGEVKYD 358
>ref|XP_006858556.1| hypothetical protein AMTR_s00071p00170380 [Amborella trichopoda]
gi|548862665|gb|ERN20023.1| hypothetical protein
AMTR_s00071p00170380 [Amborella trichopoda]
Length = 367
Score = 384 bits (987), Expect = e-104
Identities = 210/390 (53%), Positives = 260/390 (66%), Gaps = 16/390 (4%)
Frame = +3
Query: 3 QTKRSLEEPNKDDHYLSKLARTQEPPMSG----------------VQRYLVAIEYDGTNF 134
QTKR+L+ P + K++++QE G VQRYLVA+EY GT F
Sbjct: 9 QTKRTLDSPAHNSK-APKISKSQEEEDEGEEEAEYCREKMTENPRVQRYLVALEYIGTRF 67
Query: 135 AGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNP 314
+GSQKQP RTV G LE+AF KF+GQPVS SSRTD GVHAL NV HVD+ERISKR P
Sbjct: 68 SGSQKQPNC-RTVMGALEEAFHKFIGQPVSIAFSSRTDAGVHALSNVCHVDVERISKRKP 126
Query: 315 GEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDP 494
E+LPPHEP +V++AVNHFLQK GGD+M++DV+ VP DFHARF AQERTYFYR+LS +P
Sbjct: 127 NELLPPHEPGVVKRAVNHFLQKDGGDMMVIDVRFVPPDFHARFMAQERTYFYRLLSSPEP 186
Query: 495 LSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMP 674
LS FEK++AWHV EDLD+ M AC +LVGHHDFSSFRAAGCQAKSP+KTLDEL V E+
Sbjct: 187 LSTFEKERAWHVPEDLDIHAMGAACGVLVGHHDFSSFRAAGCQAKSPVKTLDELHVSEVL 246
Query: 675 TWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQ 854
PNF A ER + ++ + E N DA E NG C+
Sbjct: 247 PSPNF--------PTAFER------------THNNTIEETNASKRDAADEEDLNGSRKCR 286
Query: 855 NPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKI 1034
FG+++ H+ YV+ ARARSFLYHQV+LLVG LK+VG+G ++ DV+ I
Sbjct: 287 Q------------FGQRRTHQCYVITARARSFLYHQVRLLVGVLKAVGSGVLTVADVKCI 334
Query: 1035 LKARTITSAPPMAPSCGLYLAEVKYDFRCD 1124
L+A+ +T+A PMAP+ GLYL VKY+F D
Sbjct: 335 LEAKDVTAASPMAPASGLYLGIVKYNFDSD 364
>ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutrema salsugineum]
gi|557095305|gb|ESQ35887.1| hypothetical protein
EUTSA_v10007981mg [Eutrema salsugineum]
Length = 368
Score = 384 bits (985), Expect = e-104
Identities = 203/351 (57%), Positives = 251/351 (71%), Gaps = 3/351 (0%)
Frame = +3
Query: 72 EPPMS---GVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSR 242
EP +S VQRYLVAIEY GT F+GSQ+Q T RTV GVL++AF KF+GQPV SSR
Sbjct: 49 EPELSMNPRVQRYLVAIEYIGTRFSGSQQQATD-RTVVGVLQEAFHKFIGQPVKIFCSSR 107
Query: 243 TDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVP 422
TD GVHAL NV HVD+ERISKR PGEVLPPHEP +V++AVNHFLQ+ GDVM++DV+ VP
Sbjct: 108 TDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRNDGDVMVIDVRCVP 167
Query: 423 MDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSS 602
++HAR++A+ERTYFYR+LSG DPLS+ EKD+AWHV E+LDL MQEACR+LVG HDFSS
Sbjct: 168 SNYHARYKARERTYFYRLLSGSDPLSILEKDRAWHVPEELDLRSMQEACRVLVGTHDFSS 227
Query: 603 FRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSA 782
FRAAGCQAKSPI++LDEL V E+P+ P F P +T T + + D A
Sbjct: 228 FRAAGCQAKSPIRSLDELNVTEVPSTPYF-PSITER------------TPSYLNNGDPLA 274
Query: 783 VVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQ 962
+ + T+ GD+ FG ++ HR YVV AR R+FLYHQ
Sbjct: 275 CSSQAKTETAGVSTD-----------GGDT-------FGVRRRHRCYVVTARGRAFLYHQ 316
Query: 963 VKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYDF 1115
V+LLV LK VGTG+++ DVE+ILKA+T+T+A PMAP+CGLYLA VKY+F
Sbjct: 317 VRLLVAALKCVGTGELTVSDVERILKAKTVTAAKPMAPACGLYLARVKYEF 367
>ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Populus trichocarpa]
gi|550312358|gb|ERP48449.1| hypothetical protein
POPTR_0022s00690g [Populus trichocarpa]
Length = 370
Score = 382 bits (981), Expect = e-103
Identities = 202/342 (59%), Positives = 243/342 (71%)
Frame = +3
Query: 87 GVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHAL 266
G+QRYLVA+EY GT F GSQ+Q RTV GVL++AF KF+GQPV+ +SSRTD GVHAL
Sbjct: 48 GLQRYLVAVEYIGTRFCGSQQQ-LNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHAL 106
Query: 267 MNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHARFR 446
NV HVD+ERISKR PGEVLPPHEP +VRKAVNHFLQK GD+M+ DV+ VP FHARF+
Sbjct: 107 SNVCHVDVERISKRKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVPAHFHARFK 166
Query: 447 AQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQA 626
AQERTYFYR+L G + LS FEKD+AWHV+E+LDL MQEAC++LVGHHDFSSFRA+GCQA
Sbjct: 167 AQERTYFYRLLIGPELLSTFEKDRAWHVSEELDLVSMQEACKVLVGHHDFSSFRASGCQA 226
Query: 627 KSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNREN 806
KSP +TL+EL V E+ + P F S TER +S + E
Sbjct: 227 KSPFRTLEELSVLEVVSTPYFP-----------------SITEREQNSSNG---EGPHSF 266
Query: 807 FDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVKLLVGTL 986
+ T G I G S GFG ++ HR YV+ AR+RSFLYHQV+LLVG L
Sbjct: 267 HNKCKTGLPTGSISNGFMAGGSNSGTDLGFGIRRRHRCYVITARSRSFLYHQVRLLVGVL 326
Query: 987 KSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1112
KSVGTG ++ DVE+IL AR+IT+A PMAP+CGLYL VKY+
Sbjct: 327 KSVGTGDLTVSDVERILNARSITAASPMAPACGLYLGHVKYE 368
>gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
Length = 373
Score = 380 bits (977), Expect = e-103
Identities = 204/362 (56%), Positives = 251/362 (69%), Gaps = 1/362 (0%)
Frame = +3
Query: 30 NKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFV 209
++DD + TQ P +G+QRY +AIEY GT F+GSQKQ T RTV G LE+AF KFV
Sbjct: 33 HEDDEEEEEKEMTQNP-RNGIQRYFLAIEYIGTRFSGSQKQ-LTCRTVVGALEEAFAKFV 90
Query: 210 GQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGG 389
G PVS SSRTD GVHAL NV HVD++R SKR PGEVLPPHEP +V +AVNHFLQK
Sbjct: 91 GHPVSVSCSSRTDAGVHALSNVCHVDIQRTSKRKPGEVLPPHEPAVVGRAVNHFLQKHDS 150
Query: 390 DVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEAC 569
D+ ++DV+ VP DFHAR++A ERTYFYR+LSG +PLS FEKD+AWHV+E+L+LP MQEAC
Sbjct: 151 DLTVIDVRCVPSDFHARYKALERTYFYRLLSGPEPLSTFEKDRAWHVSEELNLPAMQEAC 210
Query: 570 RILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSIST 749
R+LVG HDFSSFRAAGCQAKSPI+TLDEL V E+ +F M E +S+
Sbjct: 211 RVLVGSHDFSSFRAAGCQAKSPIRTLDELNVSEVIESLHFPSVMDR------EGHDKVSS 264
Query: 750 TERIGDSDSSA-VVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYV 926
R S+S + + D T ++ GFG+++ HR V
Sbjct: 265 DPRSYPSNSETDIPPSSSPCIDKVTTSSED-----------------VGFGKRRRHRCLV 307
Query: 927 VVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVK 1106
V ARARSFLYHQV+LLVG LK+VGTG ++ DVE+IL A+++TSA PMAP+CGLYL EVK
Sbjct: 308 VTARARSFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAPACGLYLGEVK 367
Query: 1107 YD 1112
YD
Sbjct: 368 YD 369
>ref|NP_172451.2| pseudouridine synthase family protein [Arabidopsis thaliana]
gi|332190374|gb|AEE28495.1| pseudouridine synthase family
protein [Arabidopsis thaliana]
Length = 372
Score = 380 bits (976), Expect = e-103
Identities = 200/365 (54%), Positives = 259/365 (70%)
Frame = +3
Query: 21 EEPNKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFT 200
+E +++ L+ L + P VQRYLVAIEY GT F+GSQ+Q RTV GVL++AF
Sbjct: 32 DEESEEQQGLADL-ESMNPVNPRVQRYLVAIEYIGTRFSGSQQQAKD-RTVVGVLQEAFH 89
Query: 201 KFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQK 380
KF+GQPV SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP +V++AVNHFLQ+
Sbjct: 90 KFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQR 149
Query: 381 AGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQ 560
GDVM++DV+ VP ++HAR++AQERTYFYR+LSG DPLS+ EKD+ WHV E+L+L MQ
Sbjct: 150 KDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 209
Query: 561 EACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVS 740
EACR+LVG HDFSSFRAAGCQAKSP+++LDEL + E+P+ P F P +T
Sbjct: 210 EACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYF-PSITER---------- 258
Query: 741 ISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRG 920
T + + D A + + T N G + + GDS FGR++ HR
Sbjct: 259 --TLSNLNNGDPLACSNQPKSETAGVTT---NVGEVEGSTEGDS-------FGRRRRHRC 306
Query: 921 YVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAE 1100
YVV AR+R FLYHQV+L+VG LK VGTG+++ DVE+IL+A+T+++A PMAP+ GLYLA
Sbjct: 307 YVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLAR 366
Query: 1101 VKYDF 1115
V+Y+F
Sbjct: 367 VRYEF 371
>dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana]
gi|51971573|dbj|BAD44451.1| unnamed protein product
[Arabidopsis thaliana]
Length = 368
Score = 380 bits (976), Expect = e-103
Identities = 200/365 (54%), Positives = 259/365 (70%)
Frame = +3
Query: 21 EEPNKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFT 200
+E +++ L+ L + P VQRYLVAIEY GT F+GSQ+Q RTV GVL++AF
Sbjct: 28 DEESEEQQGLADL-ESMNPVNPRVQRYLVAIEYIGTRFSGSQQQAKD-RTVVGVLQEAFH 85
Query: 201 KFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQK 380
KF+GQPV SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP +V++AVNHFLQ+
Sbjct: 86 KFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQR 145
Query: 381 AGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQ 560
GDVM++DV+ VP ++HAR++AQERTYFYR+LSG DPLS+ EKD+ WHV E+L+L MQ
Sbjct: 146 KDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 205
Query: 561 EACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVS 740
EACR+LVG HDFSSFRAAGCQAKSP+++LDEL + E+P+ P F P +T
Sbjct: 206 EACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYF-PSITER---------- 254
Query: 741 ISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRG 920
T + + D A + + T N G + + GDS FGR++ HR
Sbjct: 255 --TLSNLNNGDPLACSNQPKSETAGVTT---NVGEVEGSTGGDS-------FGRRRRHRC 302
Query: 921 YVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAE 1100
YVV AR+R FLYHQV+L+VG LK VGTG+++ DVE+IL+A+T+++A PMAP+ GLYLA
Sbjct: 303 YVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLAR 362
Query: 1101 VKYDF 1115
V+Y+F
Sbjct: 363 VRYEF 367
>gb|AAT06466.1| At1g09800 [Arabidopsis thaliana]
Length = 372
Score = 380 bits (976), Expect = e-103
Identities = 200/365 (54%), Positives = 259/365 (70%)
Frame = +3
Query: 21 EEPNKDDHYLSKLARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFT 200
+E +++ L+ L + P VQRYLVAIEY GT F+GSQ+Q RTV GVL++AF
Sbjct: 32 DEESEEQQGLADL-ESMNPVNPRVQRYLVAIEYIGTRFSGSQQQAKD-RTVVGVLQEAFH 89
Query: 201 KFVGQPVSSMVSSRTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQK 380
KF+GQPV SSRTD GVHAL NV HVD+ERISKR PGEVLPPHEP +V++AVNHFLQ+
Sbjct: 90 KFIGQPVKIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQR 149
Query: 381 AGGDVMIVDVQKVPMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQ 560
GDVM++DV+ VP ++HAR++AQERTYFYR+LSG DPLS+ EKD+ WHV E+L+L MQ
Sbjct: 150 KDGDVMVIDVRCVPSNYHARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 209
Query: 561 EACRILVGHHDFSSFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVS 740
EACR+LVG HDFSSFRAAGCQAKSP+++LDEL + E+P+ P F P +T
Sbjct: 210 EACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYF-PSITER---------- 258
Query: 741 ISTTERIGDSDSSAVVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRG 920
T + + D A + + T N G + + GDS FGR++ HR
Sbjct: 259 --TLSNLNNGDPLACSNQPKSETAGVTT---NVGEVEGSTGGDS-------FGRRRRHRC 306
Query: 921 YVVVARARSFLYHQVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAE 1100
YVV AR+R FLYHQV+L+VG LK VGTG+++ DVE+IL+A+T+++A PMAP+ GLYLA
Sbjct: 307 YVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLAR 366
Query: 1101 VKYDF 1115
V+Y+F
Sbjct: 367 VRYEF 371
>ref|XP_006305124.1| hypothetical protein CARUB_v10009493mg [Capsella rubella]
gi|482573835|gb|EOA38022.1| hypothetical protein
CARUB_v10009493mg [Capsella rubella]
Length = 370
Score = 379 bits (974), Expect = e-102
Identities = 199/350 (56%), Positives = 254/350 (72%)
Frame = +3
Query: 66 TQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRT 245
+ P +QRYLVAIEY GT F+GSQ+Q T RTV GVL++AF KF+GQPV SSRT
Sbjct: 45 SMNPGNPRLQRYLVAIEYIGTRFSGSQQQATD-RTVVGVLQEAFHKFIGQPVKIFCSSRT 103
Query: 246 DTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPM 425
D GVHAL NV HVD+ERISKR PGEVLPPHEP +V+KAVNHFLQ+ GDVM++DV+ VP
Sbjct: 104 DAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQKAVNHFLQRKDGDVMVIDVRCVPS 163
Query: 426 DFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSF 605
++HAR++A+ERTYFYRILSG DPLS+ EKD+ WHV E+L+L MQEAC++LVG HDFSSF
Sbjct: 164 NYHARYKARERTYFYRILSGSDPLSILEKDRCWHVPEELNLRSMQEACKVLVGTHDFSSF 223
Query: 606 RAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAV 785
RAAGCQAKS +++LDEL V E+P+ P F P +T AS + + D A
Sbjct: 224 RAAGCQAKSAMRSLDELSVTEVPSTPYF-PSITERAS-------------NLNNGDPFAC 269
Query: 786 VERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQV 965
+++ T N G + + +GDS FG ++ HR YVV AR+R FLYHQV
Sbjct: 270 SSQHKTETAGVGT---NVGEVEGSTDGDS-------FGARRRHRCYVVTARSRGFLYHQV 319
Query: 966 KLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYDF 1115
+LLVG LKSVGTG+++ DVE+IL+A+T++++ PMAP+ GLYLA VKY+F
Sbjct: 320 RLLVGVLKSVGTGELTVADVERILEAKTVSASKPMAPASGLYLARVKYEF 369
>ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like 1-like isoform X1 [Citrus
sinensis]
Length = 383
Score = 379 bits (973), Expect = e-102
Identities = 202/341 (59%), Positives = 244/341 (71%)
Frame = +3
Query: 90 VQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGVHALM 269
+QRYL+A+EY GT F+GSQKQ RTV GVLE+AF KF+GQPVS +SSRTD GVHA
Sbjct: 57 IQRYLIAVEYIGTRFSGSQKQ-LNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAGVHAAS 115
Query: 270 NVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHARFRA 449
NV HVD+ERISKR PGEVLPPH+ +VR+AVNHFLQK+ GD+M+ DV+ VP DFHARFRA
Sbjct: 116 NVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQKSEGDIMVTDVRCVPSDFHARFRA 175
Query: 450 QERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAGCQAK 629
QERTYFYRILSG +PLSVFEKD+AWHVTE+LDL MQEAC++LVG HDFSSFRA+GCQA
Sbjct: 176 QERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQEACKVLVGCHDFSSFRASGCQAN 235
Query: 630 SPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERNRENF 809
SPI+TLDEL V E+ + F + N + V SI + ++G
Sbjct: 236 SPIRTLDELHVSEVVSTALFP---SINQDSPV--LSSIDNSSKLG--------------- 275
Query: 810 DATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVKLLVGTLK 989
PNG S FG +K HR Y V+ARARSFLYHQV+L+VG LK
Sbjct: 276 ---------------MPNGGS-----NVFGIRKKHRSYEVIARARSFLYHQVRLIVGVLK 315
Query: 990 SVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1112
+VGTG+++ DVE+ILKA+T+T+A PMAP+CGL L VKYD
Sbjct: 316 AVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYD 356
>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
Length = 352
Score = 379 bits (973), Expect = e-102
Identities = 200/345 (57%), Positives = 242/345 (70%)
Frame = +3
Query: 78 PMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSSRTDTGV 257
P G+QRYLVA+EY GT F GSQ+QP RTV G LE+AF KF+GQPVS SSRTD GV
Sbjct: 43 PKPGIQRYLVAVEYIGTRFYGSQQQPNC-RTVVGALEEAFQKFIGQPVSVFCSSRTDAGV 101
Query: 258 HALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKVPMDFHA 437
HAL NV HVD+ERISKR PGEVLPPHEP +V KAVNHFLQK GDV +VDV+ VP DFHA
Sbjct: 102 HALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDVRSVPNDFHA 161
Query: 438 RFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFSSFRAAG 617
R++AQERTYFYR++SG + LS FEKD+AWHV E L++ MQEAC++LVGHHDFSSFRAAG
Sbjct: 162 RYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQEACKVLVGHHDFSSFRAAG 221
Query: 618 CQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSSAVVERN 797
CQA SPI+TLDEL VCE+ + P F M ERK +R G +S V
Sbjct: 222 CQANSPIRTLDELNVCEVASTPYFPTSM--------ERK------QRQGKEESEIEV--- 264
Query: 798 RENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYHQVKLLV 977
P ++ + GFG ++ HR +VV ARARSFLYHQV+L+V
Sbjct: 265 --------------------PCSETCEV---GFGIRRRHRCFVVTARARSFLYHQVRLMV 301
Query: 978 GTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYD 1112
G LK+VG+G ++ DV +IL+A+ ++SA PMAP+CGLYL VKYD
Sbjct: 302 GVLKAVGSGDLTVGDVGRILEAKNVSSARPMAPACGLYLGHVKYD 346
>ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp.
lyrata] gi|297338368|gb|EFH68785.1| hypothetical protein
ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata]
Length = 373
Score = 379 bits (973), Expect = e-102
Identities = 197/352 (55%), Positives = 252/352 (71%)
Frame = +3
Query: 60 ARTQEPPMSGVQRYLVAIEYDGTNFAGSQKQPTTIRTVQGVLEDAFTKFVGQPVSSMVSS 239
+ + P VQRYLVAIEY GT F+GSQ+Q RTV GVL+DAF KF+GQPV SS
Sbjct: 45 SESMNPVNPRVQRYLVAIEYIGTRFSGSQQQAKD-RTVVGVLQDAFHKFIGQPVKIFCSS 103
Query: 240 RTDTGVHALMNVFHVDLERISKRNPGEVLPPHEPDIVRKAVNHFLQKAGGDVMIVDVQKV 419
RTD GVHAL NV HVD+ERISKR PGEVLPPHEP +V++AVNHFLQ+ GDVM++DV+ V
Sbjct: 104 RTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCV 163
Query: 420 PMDFHARFRAQERTYFYRILSGEDPLSVFEKDKAWHVTEDLDLPKMQEACRILVGHHDFS 599
P ++HAR++AQERTYFYR+L+G DPLS+ EKD+ WHV E+L+ MQEACR+LVG+HDFS
Sbjct: 164 PSNYHARYKAQERTYFYRLLAGSDPLSILEKDRCWHVPEELNPRSMQEACRVLVGYHDFS 223
Query: 600 SFRAAGCQAKSPIKTLDELFVCEMPTWPNFSPCMTANASAAVERKVSISTTERIGDSDSS 779
SFRAAGCQAKSP++ LDEL + E+P+ P F P +T A + + D
Sbjct: 224 SFRAAGCQAKSPMRYLDELNITEVPSTPYF-PSITERA------------WSNLNNGDPL 270
Query: 780 AVVERNRENFDATFTERDNGGILCQNPNGDSLGINGCGFGRKKGHRGYVVVARARSFLYH 959
A + + T N G + + +GDS FGR++ HR YVV AR+R FLYH
Sbjct: 271 ACSSQPKSETAGVTT---NVGEVEGSTDGDS-------FGRRRRHRCYVVTARSRGFLYH 320
Query: 960 QVKLLVGTLKSVGTGKISCDDVEKILKARTITSAPPMAPSCGLYLAEVKYDF 1115
QV+L+VG LK VGTG+++ DVE+IL+A+T+++A PMAP+ GLYLA VKY+F
Sbjct: 321 QVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVKYEF 372