BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00013941
         (567 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]   164   1e-38
emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]   164   1e-38
emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]   162   4e-38
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]   162   4e-38
emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]   160   2e-37
emb|CBI40240.3| unnamed protein product [Vitis vinifera]              159   4e-37
emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]   159   4e-37
gb|ACI62137.1| polyprotein [Drosophila melanogaster]                  158   1e-36
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...   157   2e-36
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ...   156   3e-36
emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera]   156   4e-36
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi...   155   9e-36
emb|CAN72675.1| hypothetical protein VITISV_020405 [Vitis vinifera]   154   1e-35
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         153   3e-35
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...   153   3e-35
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   153   3e-35
ref|XP_006590044.1| PREDICTED: uncharacterized protein LOC102665...   152   4e-35
ref|XP_003376336.1| retrovirus-related Pol polyprotein from tran...   152   4e-35
gb|AAS07263.1| putative gag/pol polyprotein [Oryza sativa Japoni...   152   4e-35
ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898...   152   6e-35

>emb|CAN60366.1| hypothetical protein VITISV_031870 [Vitis vinifera]
          Length = 1274

 Score =  164 bits (416), Expect = 1e-38
 Identities = 84/189 (44%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
 Frame = +1

Query: 10   LWHNHLGHIN---LKYLRKLQPTIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKPL 180
            LWH   GH+N   LK L K +       I + + C+     K  K P P+   RR    L
Sbjct: 439  LWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCL 498

Query: 181  ELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQTN 360
            E+IH D+ GPM+  +    RYFLLF DD+SR++WVY LQ K + F TFKKF+  V+ Q+ 
Sbjct: 499  EIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSG 558

Query: 361  QKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSMLN 540
            +    LRTD G E +SN+   FC+++ + RELTTP++P+QNGVAER NR +VEM RSM+ 
Sbjct: 559  KCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMK 618

Query: 541  QAKLTKGWW 567
               L+  +W
Sbjct: 619  AKNLSNHFW 627


>emb|CAN77122.1| hypothetical protein VITISV_013624 [Vitis vinifera]
          Length = 1269

 Score =  164 bits (415), Expect = 1e-38
 Identities = 86/196 (43%), Positives = 112/196 (57%), Gaps = 8/196 (4%)
 Frame = +1

Query: 4    NLLWHNHLGHINLKYLRKLQ--------PTIKSNTIITNSKCDHYCVSKAHKNPIPQQDF 159
            +++WH   GH NLK LR +Q        P I  N       C+   + K  + P PQ   
Sbjct: 443  SVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNA----QTCESCELGKQQRQPFPQNMS 498

Query: 160  RRTKKPLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRK 339
            +R    LELIH DI GPM   + S   YF LFIDD+SR+ WVY L+ K Q  S FK F+K
Sbjct: 499  KRATHKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKSFKK 558

Query: 340  QVQNQTNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVE 519
             V+ Q+ Q    LRTDNG E  S E   FC++  I+ +LT P++PQQNGV++R NR ++E
Sbjct: 559  MVETQSGQNVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYSPQQNGVSKRKNRTVME 618

Query: 520  MMRSMLNQAKLTKGWW 567
            M R ML + KL K  W
Sbjct: 619  MARCMLFEKKLPKLLW 634


>emb|CAN72676.1| hypothetical protein VITISV_020406 [Vitis vinifera]
          Length = 1183

 Score =  162 bits (411), Expect = 4e-38
 Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
 Frame = +1

Query: 10  LWHNHLGHIN---LKYLRKLQPTIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKPL 180
           LWH   GH+N   LK L K +       I + + C+     K  K P P+   RR    L
Sbjct: 373 LWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCL 432

Query: 181 ELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQTN 360
           E+IH D+ GPM+  +    RYFLLF +D+SR++WVY LQ K + F TFKKF+  V+ Q+ 
Sbjct: 433 EIIHADLCGPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSG 492

Query: 361 QKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSMLN 540
           +    LRTD G E +SN+   FC+++ + RELTTP++P+QNGVAER NR +VEM RSM+ 
Sbjct: 493 KCIKVLRTDRGGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMK 552

Query: 541 QAKLTKGWW 567
              L+  +W
Sbjct: 553 AKNLSNHFW 561


>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
          Length = 1430

 Score =  162 bits (411), Expect = 4e-38
 Identities = 83/189 (43%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
 Frame = +1

Query: 10   LWHNHLGHIN---LKYLRKLQPTIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKPL 180
            LWH   GH+N   LK L K +   +   I + + C+     K  K P P+   RR    L
Sbjct: 550  LWHLRYGHLNVKGLKLLSKKEMVFELPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCL 609

Query: 181  ELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQTN 360
            E+IH D+ GPM+  +    RYFLLF DD+SR++WVY LQ K + F TFKKF+  V+ Q+ 
Sbjct: 610  EIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSG 669

Query: 361  QKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSMLN 540
            +    LRTD   E +SN+   FC+++ + RELTTP++P+QNGVAER NR +VEM RSM+ 
Sbjct: 670  KCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQNGVAERKNRTVVEMARSMMX 729

Query: 541  QAKLTKGWW 567
               L+  +W
Sbjct: 730  AKNLSNHFW 738


>emb|CAN68235.1| hypothetical protein VITISV_037104 [Vitis vinifera]
          Length = 2041

 Score =  160 bits (406), Expect = 2e-37
 Identities = 82/192 (42%), Positives = 109/192 (56%), Gaps = 4/192 (2%)
 Frame = +1

Query: 4    NLLWHNHLGHINLKYLRKLQPTIKSNTI----ITNSKCDHYCVSKAHKNPIPQQDFRRTK 171
            +++WH    H NLK LR +Q       +    +    C+   + K  + P PQ   +R  
Sbjct: 1176 SVVWHKRYXHFNLKSLRFMQEAXMVEDMPEISVNAQTCESCELGKQQRQPFPQNMSKRAT 1235

Query: 172  KPLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQN 351
              LELIH DI GPM   + S   YF LFIDD+SR+ WVY L+ K Q  S FK F+K V+ 
Sbjct: 1236 HKLELIHSDICGPMSTTSLSNNVYFALFIDDFSRMTWVYFLKTKSQVLSMFKSFKKMVET 1295

Query: 352  QTNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRS 531
            Q+ Q    LRTDNG E  S E   FC++  I+ +LT P++PQ NGV+ER NR ++EM R 
Sbjct: 1296 QSGQXVKVLRTDNGGEYTSKEFSVFCQEAGIVHQLTAPYSPQXNGVSERKNRTVMEMARC 1355

Query: 532  MLNQAKLTKGWW 567
            ML + KL K  W
Sbjct: 1356 MLFEKKLPKLLW 1367


>emb|CBI40240.3| unnamed protein product [Vitis vinifera]
          Length = 2196

 Score =  159 bits (403), Expect = 4e-37
 Identities = 85/196 (43%), Positives = 111/196 (56%), Gaps = 8/196 (4%)
 Frame = +1

Query: 4    NLLWHNHLGHINLKYLRKLQ--------PTIKSNTIITNSKCDHYCVSKAHKNPIPQQDF 159
            +++WH   GH NLK LR +Q        P I  N       C+   + K  + P PQ   
Sbjct: 462  SVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNA----QTCESCELGKQQRQPFPQNMS 517

Query: 160  RRTKKPLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRK 339
            ++    LELI+ DI GPM   + S   YF LFIDD SR+ WVY L+ K Q  S FK F+K
Sbjct: 518  KKATHKLELINSDICGPMSTASLSNNVYFALFIDDLSRMTWVYFLKTKSQVLSVFKSFKK 577

Query: 340  QVQNQTNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVE 519
             V+ Q+ Q    LRTDNG E IS E+  FC++  I+ +L  P++PQQNGV ER NR ++E
Sbjct: 578  MVETQSGQNVKVLRTDNGGEYISKELNVFCQEAGIVHQLIAPYSPQQNGVFERKNRTVME 637

Query: 520  MMRSMLNQAKLTKGWW 567
            M R ML + KL K  W
Sbjct: 638  MARCMLFEKKLPKLLW 653


>emb|CAN71759.1| hypothetical protein VITISV_020777 [Vitis vinifera]
          Length = 1472

 Score =  159 bits (403), Expect = 4e-37
 Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 3/189 (1%)
 Frame = +1

Query: 10  LWHNHLGHIN---LKYLRKLQPTIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKPL 180
           LWH   GH+N   LK L K +       I + + C+     K  K P P+   RR    L
Sbjct: 424 LWHLRYGHLNVKGLKLLSKKEMVFGLPKIDSVNVCEGCIYGKQSKKPFPKGRSRRASSCL 483

Query: 181 ELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQTN 360
           E+IH D+ GPM+  +    RYFLLF DD+SR++WVY LQ K + F TFKKF+  V+ Q+ 
Sbjct: 484 EIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETFKKFKAFVEKQSG 543

Query: 361 QKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSMLN 540
           +    LRTD G E +SN+   F +++ + RELTTP++P QNGVAER NR +VEM RSM+ 
Sbjct: 544 KCIKVLRTDRGGEFLSNDFKVFXEEEGLHRELTTPYSPXQNGVAERKNRTVVEMARSMMK 603

Query: 541 QAKLTKGWW 567
              L+  +W
Sbjct: 604 AKNLSNHFW 612


>gb|ACI62137.1| polyprotein [Drosophila melanogaster]
          Length = 1319

 Score =  158 bits (399), Expect = 1e-36
 Identities = 78/190 (41%), Positives = 112/190 (58%), Gaps = 5/190 (2%)
 Frame = +1

Query: 13  WHNHLGHINLKYLRKLQPT-----IKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKP 177
           WHN  GH+N + L++++       +    +  N  CD   ++K H  P PQ   R T+  
Sbjct: 403 WHNRFGHLNFQCLKEIKEKELVIGMDFKNMSVNINCDTCNMAKIHVLPFPQNSERATQSV 462

Query: 178 LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
           LEL+H D+ GPM + +    +YF+ FIDDYSR  ++Y +  K++ F  FK F+  V+ QT
Sbjct: 463 LELVHSDVCGPMNVSSLGGNKYFVTFIDDYSRKIFIYFMHAKNEVFDKFKLFKSYVECQT 522

Query: 358 NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
            +K   LR+DNG E ++ +  E+     I R+LT P+ PQQNGVAER NR IVEM +SML
Sbjct: 523 GKKIKALRSDNGTEYVNRQFTEYLNTCGIKRQLTVPYTPQQNGVAERANRTIVEMAKSML 582

Query: 538 NQAKLTKGWW 567
             AKL +  W
Sbjct: 583 IHAKLEEFLW 592


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score =  157 bits (397), Expect = 2e-36
 Identities = 79/191 (41%), Positives = 113/191 (59%), Gaps = 5/191 (2%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKLQPTIK-----SNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKK 174
            LWH   GH+N   +  +Q T+K         +    C    + K  +   P++    T K
Sbjct: 456  LWHKRFGHVNYDKIETMQ-TLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNK 514

Query: 175  PLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQ 354
             LELIH D+ GPM+  + +  RYFL FIDD+SR+ WVY L+ K +  + FK F+  V+NQ
Sbjct: 515  TLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQ 574

Query: 355  TNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSM 534
            +  +   LRTD G E +S E I+ C++  I  E+TTP++PQQNGVAER NR +VEM RSM
Sbjct: 575  SESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSM 634

Query: 535  LNQAKLTKGWW 567
            + + KL+  +W
Sbjct: 635  IEEKKLSNKFW 645


>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1333

 Score =  156 bits (395), Expect = 3e-36
 Identities = 83/194 (42%), Positives = 110/194 (56%), Gaps = 8/194 (4%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKLQ--------PTIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRR 165
            LWH   GH+N+ +L+ L         P IK   +     C+     K  +   P     R
Sbjct: 444  LWHLRYGHLNVNWLKLLVQKDMVIGLPNIKELDL-----CEGCIYGKQTRKSFPVGKSWR 498

Query: 166  TKKPLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQV 345
                LEL+H D+ GPM+M +    RYFL+F DDYSR +WVY L+ K + F TFKKF+  V
Sbjct: 499  ATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKKFKAFV 558

Query: 346  QNQTNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMM 525
            +NQ+  K  +LRTD G E +SN+   FC++  I RELT P+ P+QNGVAER NR +VEM 
Sbjct: 559  ENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYTPEQNGVAERKNRTVVEMA 618

Query: 526  RSMLNQAKLTKGWW 567
            RS L    L   +W
Sbjct: 619  RSSLKAKGLPDYFW 632


>emb|CAN76821.1| hypothetical protein VITISV_017285 [Vitis vinifera]
          Length = 672

 Score =  156 bits (394), Expect = 4e-36
 Identities = 81/190 (42%), Positives = 109/190 (57%), Gaps = 4/190 (2%)
 Frame = +1

Query: 10  LWHNHLGHINLKYLRKLQP----TIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKP 177
           LWH   GH+N   L+ LQ     T      I +  C+   V K H++  PQ   RR K  
Sbjct: 317 LWHLRYGHLNFGGLKTLQQKHMVTGLPQISIPSQVCEECVVGKQHRSQFPQGKSRRAKNV 376

Query: 178 LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
           LEL+H DI G +   +   ++Y ++FIDDYSR  WV  LQ K + FS FK F+ +V+ +T
Sbjct: 377 LELVHSDICGLINPTSNGGKKYLIIFIDDYSRKTWVSFLQEKSEAFSAFKSFKARVEKET 436

Query: 358 NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
            +    LRTD G E  SNE   FC  + I RELT  + PQQNGV+ER NR I+ M+RS+L
Sbjct: 437 GRSIKILRTDRGGEYCSNEFEHFCDDQGIRRELTAAYTPQQNGVSERKNRTILNMVRSLL 496

Query: 538 NQAKLTKGWW 567
            + K+ K +W
Sbjct: 497 ARGKIPKSFW 506


>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
            gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
            polyprotein, putative [Arabidopsis thaliana]
          Length = 1320

 Score =  155 bits (391), Expect = 9e-36
 Identities = 80/190 (42%), Positives = 111/190 (58%), Gaps = 4/190 (2%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKL--QPTIKSNTIIT--NSKCDHYCVSKAHKNPIPQQDFRRTKKP 177
            LWH   GH+N   L  L  +  ++    I   N  C+   + K  K   P++   R +KP
Sbjct: 467  LWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKP 526

Query: 178  LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
            LELIH D+ GP++  +  +  YFLLFIDD+SR  WVY L+ K + F  FKKF+  V+ ++
Sbjct: 527  LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKES 586

Query: 358  NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
                 T+R+D G E  S E +++C+   I R+LT P +PQQNGVAER NR I+EM RSML
Sbjct: 587  GLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSML 646

Query: 538  NQAKLTKGWW 567
               +L K  W
Sbjct: 647  KSKRLPKELW 656


>emb|CAN72675.1| hypothetical protein VITISV_020405 [Vitis vinifera]
          Length = 1919

 Score =  154 bits (390), Expect = 1e-35
 Identities = 85/196 (43%), Positives = 110/196 (56%), Gaps = 8/196 (4%)
 Frame = +1

Query: 4    NLLWHNHLGHINLKYLRKLQ--------PTIKSNTIITNSKCDHYCVSKAHKNPIPQQDF 159
            +++WH   GH NLK LR +Q        P I  N       C+   + K    P PQ   
Sbjct: 896  SVVWHKRYGHFNLKSLRFMQEAGMVEDMPEISVNA----QTCESCELGKQQXQPFPQNMS 951

Query: 160  RRTKKPLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRK 339
            +R    L LIH DI GPM   + S   YF LFIDD +R+  VY L+ K Q  S FK+F+K
Sbjct: 952  KRATHKLGLIHSDICGPMSTASLSNNVYFALFIDDLNRMIXVYFLKTKSQVLSVFKRFKK 1011

Query: 340  QVQNQTNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVE 519
             V+ Q+ Q    LRTDNG E IS E   FC++  I+ +LTTP++PQ+NGV+ER NR  +E
Sbjct: 1012 MVETQSGQNVKVLRTDNGGEYISKEFNVFCQEAGIVHQLTTPYSPQRNGVSERKNRXXME 1071

Query: 520  MMRSMLNQAKLTKGWW 567
            M R ML + KL K  W
Sbjct: 1072 MARCMLFEKKLPKLLW 1087


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  153 bits (387), Expect = 3e-35
 Identities = 79/190 (41%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKL--QPTIKSNTIIT--NSKCDHYCVSKAHKNPIPQQDFRRTKKP 177
            LWH   GH+N   L  L  +  ++    I   N  C+   + K  K   P++   R +KP
Sbjct: 467  LWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKP 526

Query: 178  LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
            LELIH D+ GP++  +  +  YFLLFIDD+SR  WVY L+ K + F  FKKF+  V+ ++
Sbjct: 527  LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKES 586

Query: 358  NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
                 T+R+D G E  S E +++C+   I R+LT P +PQQNGV ER NR I+EM RSML
Sbjct: 587  GLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSML 646

Query: 538  NQAKLTKGWW 567
               +L K  W
Sbjct: 647  KSKRLPKELW 656


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1272

 Score =  153 bits (387), Expect = 3e-35
 Identities = 79/190 (41%), Positives = 111/190 (58%), Gaps = 4/190 (2%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKL--QPTIKSNTIIT--NSKCDHYCVSKAHKNPIPQQDFRRTKKP 177
            LWH   GH+N   L  L  +  ++    I   N  C+   +    K   P++   R +KP
Sbjct: 467  LWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKP 526

Query: 178  LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
            LELIH D+ GP++  +  +  YFLLFIDD+SR  WVY L+ K + F  FKKF+  V+ ++
Sbjct: 527  LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKES 586

Query: 358  NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
                 T+R+D+G E  S E +++C+   I R+LT P +PQQNGVAER NR I+EM RSML
Sbjct: 587  GLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSML 646

Query: 538  NQAKLTKGWW 567
               +L K  W
Sbjct: 647  KSKRLPKELW 656


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  153 bits (387), Expect = 3e-35
 Identities = 79/190 (41%), Positives = 110/190 (57%), Gaps = 4/190 (2%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKL--QPTIKSNTIIT--NSKCDHYCVSKAHKNPIPQQDFRRTKKP 177
            LWH   GH+N   L  L  +  ++    I   N  C+   + K  K   P++   R +KP
Sbjct: 467  LWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKP 526

Query: 178  LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
            LELIH D+ GP++  +  +  YFLLFIDD+SR  WVY L+ K + F  FKKF+  V+ ++
Sbjct: 527  LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKES 586

Query: 358  NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
                 T+R+D G E  S E +++C+   I R+LT P +PQQNGV ER NR I+EM RSML
Sbjct: 587  GLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSML 646

Query: 538  NQAKLTKGWW 567
               +L K  W
Sbjct: 647  KSKRLPKELW 656


>ref|XP_006590044.1| PREDICTED: uncharacterized protein LOC102665857 [Glycine max]
          Length = 678

 Score =  152 bits (385), Expect = 4e-35
 Identities = 77/190 (40%), Positives = 109/190 (57%), Gaps = 4/190 (2%)
 Frame = +1

Query: 10  LWHNHLGHINLKYLRKLQPTIKSNTIITNSKCDHYC----VSKAHKNPIPQQDFRRTKKP 177
           LWH   GH+N   L +L        + + +  D  C    + K  +   P++   R  KP
Sbjct: 384 LWHLRFGHLNFDGLERLAKKEMVRDLPSINHPDQLCERCLIGKQFRKSFPKESTTRATKP 443

Query: 178 LELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQT 357
           LELIH D+ GP++  +  + +YFLLFIDDYSR  WVY L+ K + F  FKKF+  V+ ++
Sbjct: 444 LELIHTDVCGPIKPNSFGKNKYFLLFIDDYSRKTWVYFLKEKSEVFENFKKFKALVEKES 503

Query: 358 NQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSML 537
                 +R+D G E  SN+  ++C+   I R LT P +PQQNGVAER NR I+ M+RSML
Sbjct: 504 GLSIKAMRSDRGGEFTSNKFNKYCEDHGIRRPLTVPRSPQQNGVAERKNRTILNMVRSML 563

Query: 538 NQAKLTKGWW 567
              K+ K +W
Sbjct: 564 KSKKMLKEFW 573


>ref|XP_003376336.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trichinella spiralis] gi|316974954|gb|EFV58419.1|
           retrovirus-related Pol polyprotein from transposon TNT
           1-94 [Trichinella spiralis]
          Length = 1003

 Score =  152 bits (385), Expect = 4e-35
 Identities = 83/189 (43%), Positives = 114/189 (60%), Gaps = 3/189 (1%)
 Frame = +1

Query: 10  LWHNHLGHIN---LKYLRKLQPTIKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKKPL 180
           LWH  LGH++   +K L+  Q T   +  IT + C      K  + P P+   +R+K+ L
Sbjct: 116 LWHRQLGHLSRGSMKLLQDGQATGIPSDAITKTDCVTCLKGKQCRLPFPKSATKRSKEVL 175

Query: 181 ELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQTN 360
           EL+H DI GPM++ +    RYFL FIDD+SR ++VY L+ K++  S FK F   V+ QT+
Sbjct: 176 ELVHSDICGPMQVASVGGARYFLSFIDDFSRKSFVYFLKHKNEVLSKFKDFIAMVERQTS 235

Query: 361 QKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSMLN 540
           ++   LRTDNGRE ++N   EF  +K I  E T P  PQQNGVAER NR +VE  R+ML 
Sbjct: 236 KRVKCLRTDNGREYVNNMFAEFLVRKGIRHERTIPETPQQNGVAERMNRTLVEKARTMLI 295

Query: 541 QAKLTKGWW 567
            A L+   W
Sbjct: 296 DANLSPDLW 304


>gb|AAS07263.1| putative gag/pol polyprotein [Oryza sativa Japonica Group]
            gi|108710643|gb|ABF98438.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1318

 Score =  152 bits (385), Expect = 4e-35
 Identities = 80/189 (42%), Positives = 114/189 (60%), Gaps = 3/189 (1%)
 Frame = +1

Query: 10   LWHNHLGHINLKYLRKL--QPTIKSNTIITNSKCDHYCV-SKAHKNPIPQQDFRRTKKPL 180
            +WH+ L H+N   + +L     I   T++  SKC H CV SK H+ P    + R    PL
Sbjct: 549  VWHSRLCHVNFSCMTRLANMSLIPKFTLVKGSKC-HTCVQSKQHRKPHKASEARNLA-PL 606

Query: 181  ELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQTN 360
            EL+H D+     ++TK E++YF+  IDD +R  +VYLL+ KD+    FK ++ +V NQ  
Sbjct: 607  ELVHSDLCEMNSVLTKGEKKYFMTLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVDNQLE 666

Query: 361  QKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSMLN 540
            +K   LR+D G E  SNE   FC++  II E T P++PQ NGVAER NR + EM+ +ML+
Sbjct: 667  RKIKRLRSDRGGEYFSNEFASFCEEFGIIHERTPPYSPQSNGVAERKNRTLTEMVNAMLD 726

Query: 541  QAKLTKGWW 567
             A L+K WW
Sbjct: 727  TAGLSKEWW 735


>ref|XP_002064813.1| GK15001 [Drosophila willistoni] gi|194160898|gb|EDW75799.1| GK15001
           [Drosophila willistoni]
          Length = 1249

 Score =  152 bits (384), Expect = 6e-35
 Identities = 77/191 (40%), Positives = 109/191 (57%), Gaps = 5/191 (2%)
 Frame = +1

Query: 10  LWHNHLGHINLKYLRKLQPT-----IKSNTIITNSKCDHYCVSKAHKNPIPQQDFRRTKK 174
           LWH   GH+N K L ++        +       N+ C    VSK H  P P+    R+ +
Sbjct: 394 LWHKRFGHLNYKSLTQIASKGLVRGLSVTNFAPNTPCKTCMVSKIHVQPFPKMTESRSSE 453

Query: 175 PLELIHCDIYGPMEMMTKSEQRYFLLFIDDYSRINWVYLLQIKDQFFSTFKKFRKQVQNQ 354
            L+L+H D+ GP    +    RYFL FIDD SR  +VY L+ KD+ F  F +F+  V+ Q
Sbjct: 454 LLQLVHSDVCGPFGTKSLGGSRYFLTFIDDKSRRIFVYFLKGKDEVFGKFLEFKSLVERQ 513

Query: 355 TNQKFVTLRTDNGRELISNEMIEFCKKKRIIRELTTPFNPQQNGVAERCNRNIVEMMRSM 534
           T +K   +R+DNGRE ++N   ++ KK  I+R+LT  + PQQNGVAER NR +VEM R +
Sbjct: 514 TGKKLKCIRSDNGREYVNNAFDDYLKKNGILRQLTIAYTPQQNGVAERANRTLVEMSRCL 573

Query: 535 LNQAKLTKGWW 567
           L Q+ L +  W
Sbjct: 574 LAQSGLCEALW 584