BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00013672
         (1551 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A...   487   e-135
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   437   e-120
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   425   e-116
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   421   e-115
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc...   414   e-113
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]    414   e-113
ref|XP_006452719.1| hypothetical protein CICLE_v10007802mg [Citr...   413   e-112
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr...   413   e-112
ref|XP_006452716.1| hypothetical protein CICLE_v10007802mg [Citr...   413   e-112
gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indi...   413   e-112
ref|XP_006452715.1| hypothetical protein CICLE_v10007802mg [Citr...   410   e-112
ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transc...   409   e-111
ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [S...   408   e-111
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]    406   e-110
gb|EOY33213.1| BSD domain (BTF2-like transcription factors, Syna...   404   e-110
gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Syna...   404   e-110
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc...   404   e-110
gb|ACG24327.1| BSD domain containing protein [Zea mays]               404   e-110
gb|AFW61224.1| BSD domain containing protein [Zea mays]               403   e-109
ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transc...   401   e-109

>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
            gi|548861733|gb|ERN19104.1| hypothetical protein
            AMTR_s00061p00135540 [Amborella trichopoda]
          Length = 626

 Score =  487 bits (1254), Expect = e-135
 Identities = 264/516 (51%), Positives = 346/516 (67%), Gaps = 14/516 (2%)
 Frame = -2

Query: 1511 SMRATYKPT-VKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAA 1335
            +MRA YK +  K PGV GVLT+ +  F F PNDP   S++KLDV+F+ IK HKFSKE + 
Sbjct: 7    TMRAKYKASGPKDPGVAGVLTMRDDSFIFRPNDPS--SSVKLDVSFRCIKGHKFSKEGSK 64

Query: 1334 QALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQ---------QTTPQQAPP 1182
            QALLNL QD   KGGG++FEF NF++R+VCRDLV ++L + Q         Q  P Q P 
Sbjct: 65   QALLNLTQD---KGGGYMFEFANFKDRDVCRDLVGRVLGRLQCLPPSDQSAQVVPAQ-PT 120

Query: 1181 DNRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 1002
               D  L++ +ME RM +LR++S+LQKLH +LV+G VLTE EFWA R++L+++   K  K
Sbjct: 121  TQHDNQLSMAEMEQRMNLLREDSELQKLHRQLVIGGVLTETEFWATRKNLLDDAAHKASK 180

Query: 1001 QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 822
            Q  G KSAMLAD+      ++N V F LTPEII+QIFAEKPAV QA+LK VP KMS+ DF
Sbjct: 181  QRAGFKSAMLADVRPLTDGRTNKVTFSLTPEIIHQIFAEKPAVHQAFLKFVPSKMSERDF 240

Query: 821  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDL 642
            WTKYCRAEY +R+K                  LK D+ILA E RRKIR+VDPTVDMA+DL
Sbjct: 241  WTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTVDMAADL 300

Query: 641  ADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 462
             DDY+HLPGHGILRD  +E +D ++  PKRT L+D+NRHAAVVLEG+TL + + GDTR+V
Sbjct: 301  GDDYSHLPGHGILRDGSKESVDSESELPKRTLLQDLNRHAAVVLEGRTL-DVELGDTRTV 359

Query: 461  AQGLVRVNKGK--ANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDS 288
            A+ L R  + +    T D+  +++R  RV +MT+IEDLQ P++L +A LCIKDPR+YFDS
Sbjct: 360  AEALARSKQAEVATETSDETENQKRLERVSQMTEIEDLQAPRSLPYAPLCIKDPREYFDS 419

Query: 287  QQANGMYAQGEKRDFRTAE--HFNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDN 114
            Q+AN   A G+       +  H +  + Y+SL   +  V   G KDPI+ P LA+KVL++
Sbjct: 420  QRANAFKATGDTGSGVNKDCCHLSTKQAYESLRAQILEVKSVGFKDPIVIPDLALKVLND 479

Query: 113  LTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            +   +SST P  GKN +  VL  LP   +  L + W
Sbjct: 480  VNQQLSSTDPQLGKNPQATVLDMLPHRTKEELLQHW 515


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  437 bits (1123), Expect = e-120
 Identities = 242/510 (47%), Positives = 325/510 (63%), Gaps = 10/510 (1%)
 Frame = -2

Query: 1505 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ-A 1329
            RA YK +VK  GV GVL +TE KF F+PNDP   S+ + DV F+ IK HKFSK  + + A
Sbjct: 8    RARYKTSVKDSGVAGVLKMTEDKFVFMPNDPT--SSARFDVEFRFIKGHKFSKGGSNKPA 65

Query: 1328 LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPDNRDVLLN 1158
            LLNL QD   KGGG+IFEF N+ +R VCR+ V + LAK+ + +    +Q+     D  L+
Sbjct: 66   LLNLTQDSE-KGGGYIFEFENYPDREVCREFVGRALAKFSEASKAGSEQSAVKLFDEQLS 124

Query: 1157 VEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSA 978
              +ME R+++LR++S+LQKLH + V+  VLTEAEFWA R+ L++   S+  KQ  G KSA
Sbjct: 125  TIEMERRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDGNTSRTSKQRVGFKSA 184

Query: 977  MLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAE 798
            M++D+      ++N V F+LTPEII+QIFAEKPAV QA+L  VP KM++ DFW KYCRAE
Sbjct: 185  MISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKMTEKDFWNKYCRAE 244

Query: 797  YFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLADDYTHLP 618
            Y + ++                  LK D+ILA+E RRKIR+VDPT+DM +D  DDY HLP
Sbjct: 245  YLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLDMEADQGDDYMHLP 304

Query: 617  GHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVN 438
             HGI RD  +E ID    Q +RT  +D+NRHAAVVLEG+ + + +  DTR+VA+ L +  
Sbjct: 305  DHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPI-DVELEDTRTVAEALAKSK 363

Query: 437  KGKA--NTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYA 264
            + +A     D      R  R+  MT+IEDLQ P+ L FA+LCIKDPR YFDSQQAN +  
Sbjct: 364  RVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQQANALKT 423

Query: 263  QGE----KRDFRTAEHFNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYIS 96
             G+     +  + +   +  E Y SL   +S +   GL DPI+ P +A+KVL+ LT  IS
Sbjct: 424  LGDTLAGSKQIKCS--LSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNIS 481

Query: 95   STQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            ST+ H GKN ++ VL  LPII +  L   W
Sbjct: 482  STKFHLGKNPQESVLDRLPIITKEELLHHW 511


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  425 bits (1093), Expect = e-116
 Identities = 236/521 (45%), Positives = 337/521 (64%), Gaps = 13/521 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MG++  ++ A YK T+K PG  GVL + E KFTF P+DPR  S MKL+V+F++IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56

Query: 1349 K---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 1185
            K      A  LLNL +D + KGGG++FEF N   R++ RD VAK+L K Q T P +   P
Sbjct: 57   KVDGSKPAPPLLNLSKD-SDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVP 115

Query: 1184 PDNR-----DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 1020
            P+N      +  L+  +M+ RM++L+++S+LQKLH + V+G +L E+EFWA R++L+E+E
Sbjct: 116  PENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDE 175

Query: 1019 LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 840
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKK 235

Query: 839  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTV 660
            MS+ DFWTKY RAEY  R+K                  LK+D+ILA E R KI++VDPT+
Sbjct: 236  MSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTL 295

Query: 659  DMASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 480
            DM +D  DDY HLP HGI+RD  +E ID D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 296  DMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 354

Query: 479  GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 303
             DT++VA+ + R  K   ++++   ++  R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  TDTKTVAEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 302  QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAV 129
            +YFDSQQAN + + G   D R A +  L  D+ +D L   +S +  NGL  P++   +A+
Sbjct: 415  EYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVAL 474

Query: 128  KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            KVL+ L   IS ++    KN +  +L  +P   ++ L + W
Sbjct: 475  KVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHW 515


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  421 bits (1083), Expect = e-115
 Identities = 231/514 (44%), Positives = 315/514 (61%), Gaps = 6/514 (1%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            M + Q + R  YK ++K PG PG L LT +K  F PN+P + S  KLD++FK +  HK +
Sbjct: 1    MASKQVTKRVKYKTSLKDPGTPGRLLLTMEKLAFRPNNPNSAS--KLDMDFKYVTNHKNT 58

Query: 1349 KETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNRD 1170
            KE +A+A+LNL  +   +G  +IFEF N ++  +C+++V K L+K   T      P+   
Sbjct: 59   KEGSAKAMLNLTSN---QGVSYIFEFENHDDLRICKEIVGKALSKLGDTPKPPDAPEVPS 115

Query: 1169 VLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTG 990
               + E++  RM +LR+N +LQKLH + V  +VLT++EFWA R+ L+  E S+  KQ  G
Sbjct: 116  DQPSTEELLLRMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEFSRKSKQRVG 175

Query: 989  LKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKY 810
            LKS MLAD       Q+N V F+LTPEI+ +IFAEKPAV QAYL  VP KMS+ DFWTKY
Sbjct: 176  LKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKY 235

Query: 809  CRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLADDY 630
            CRAEY  RS+                  LK D+ILA ETR+KIR VDPT+DM +D  DDY
Sbjct: 236  CRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLDMEADQGDDY 295

Query: 629  THLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGL 450
            THLP HGI+RD  ++ I+      +RT L+D+NRHAAVVLEG  + +    DT++VA  L
Sbjct: 296  THLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQDTKAVADAL 355

Query: 449  VRVNKGKANTVDKLSD----ERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 282
             R  +G   T+++ +D    + R NR+ +M +IEDLQG      A LCIKDPR YFDSQQ
Sbjct: 356  ARSKRG-IKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDPRDYFDSQQ 414

Query: 281  ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLT 108
            A+ +    +      A   +L   E Y SL +++++    GL DPI+ P++A KVL  LT
Sbjct: 415  ASALKNSRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIATKVLSILT 474

Query: 107  HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            H ISST+ H GKN+ + VL  LP   +  L   W
Sbjct: 475  HNISSTKYHLGKNSRESVLDRLPNTIKEELLHHW 508


>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Citrus sinensis]
          Length = 597

 Score =  414 bits (1064), Expect = e-113
 Identities = 231/514 (44%), Positives = 324/514 (63%), Gaps = 7/514 (1%)
 Frame = -2

Query: 1526 GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 1347
            G  Q + RA YK +VK PG PG L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTPGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 1346 ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNR- 1173
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T P  A   +  
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYADLHVCRDFVSKVLEKSKET-PNAALEKSAI 116

Query: 1172 ---DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKK 1002
               D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  K
Sbjct: 117  KLPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDIDPSKKSK 176

Query: 1001 QMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDF 822
            Q  G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++F
Sbjct: 177  QRVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEF 236

Query: 821  WTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDL 642
            WTKYCRAEY  R+K                  LK+D+ILA+E R+KIR+VDPT+DM +D 
Sbjct: 237  WTKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADE 296

Query: 641  ADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSV 462
             DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++
Sbjct: 297  GDDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRAL 356

Query: 461  AQGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQ 282
            A+ L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQ
Sbjct: 357  AEALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQ 415

Query: 281  ANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLT 108
            AN + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LT
Sbjct: 416  ANTLKA---SRDAQASMKCSLSKQEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLT 472

Query: 107  HYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            H ISS + H GKN  + VL  LP   +  L   W
Sbjct: 473  HNISSIKYHLGKNPRETVLDRLPSATKEKLLYHW 506


>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  414 bits (1064), Expect = e-113
 Identities = 237/511 (46%), Positives = 326/511 (63%), Gaps = 12/511 (2%)
 Frame = -2

Query: 1502 ATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQ--- 1332
            A YK T+K  G  GVL ++E KFTF PNDPR  S MKL V+F+ IK HKF+K   ++   
Sbjct: 4    AKYKATLKDRGTGGVLRMSEDKFTFTPNDPR--SLMKLSVDFQTIKGHKFNKVDGSKPTP 61

Query: 1331 ALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPDNRDVLLN 1158
            ALLNL +D + KGGG+IFEF N   R++CRD VA++L KYQ T P +   PP+   V   
Sbjct: 62   ALLNLSKD-SDKGGGYIFEFDNVGNRDLCRDFVARVLGKYQGTVPARPNVPPELSAVSTG 120

Query: 1157 VE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMT 993
             E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E SK  KQ  
Sbjct: 121  PEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDETSKGSKQKP 180

Query: 992  GLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTK 813
            G KSAMLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K+S+ DFWTK
Sbjct: 181  GFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKKLSEKDFWTK 240

Query: 812  YCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLADD 633
            YCRAEY  R+K                  LK+D+ILA E + KI++VDPT+DM +D  DD
Sbjct: 241  YCRAEYLLRTKNTLAAKAEAAEDEELAMFLKNDDILAKEAKLKIKRVDPTLDMEADAGDD 300

Query: 632  YTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQG 453
            Y HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG++ ++ +  DT++VA+ 
Sbjct: 301  YIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRS-ADIESTDTKTVAEA 359

Query: 452  LVRVNK--GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 279
            L R  K    ++  D  S ER   +   MT+IEDLQ P++L +A LCIKDPR+YFDSQQA
Sbjct: 360  LARSKKEPPPSSVADDASHERLV-KAARMTEIEDLQAPRSLPYALLCIKDPREYFDSQQA 418

Query: 278  NGMYAQGEKRDFRTAEHFNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYI 99
            N +   G   D R A   +L  T D+  + + ++    +  P++   +A+KVL+ L   I
Sbjct: 419  NALRPLG-SNDGRKARSCSL-STDDAFRHLMDQISSVKMNCPVVQSDVALKVLNELNEGI 476

Query: 98   SSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            S ++    KN +  +L  LP   ++ L + W
Sbjct: 477  SRSRRLNLKNPQDSLLGRLPHRTRDELMDHW 507


>ref|XP_006452719.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555945|gb|ESR65959.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 557

 Score =  413 bits (1061), Expect = e-112
 Identities = 228/513 (44%), Positives = 323/513 (62%), Gaps = 6/513 (1%)
 Frame = -2

Query: 1526 GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 1347
            G  Q + RA YK +VK PG  G L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTTGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 1346 ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPD 1179
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T     +++   
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVK 117

Query: 1178 NRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQ 999
              D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  KQ
Sbjct: 118  LPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQ 177

Query: 998  MTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFW 819
              G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++FW
Sbjct: 178  RVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFW 237

Query: 818  TKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLA 639
            TKYCRAEY  R+K                  LK+D+ILA+E R+KIR+VDPT+DM +D  
Sbjct: 238  TKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEG 297

Query: 638  DDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVA 459
            DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++A
Sbjct: 298  DDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALA 357

Query: 458  QGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 279
            + L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQA
Sbjct: 358  EALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQA 416

Query: 278  NGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTH 105
            N + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LTH
Sbjct: 417  NTLKA---SRDSQASMKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTH 473

Query: 104  YISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
             ISS + H GKN  + VL  LP   +  L   W
Sbjct: 474  NISSIKYHLGKNPRETVLDRLPSATKEKLLYHW 506


>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555943|gb|ESR65957.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 597

 Score =  413 bits (1061), Expect = e-112
 Identities = 228/513 (44%), Positives = 323/513 (62%), Gaps = 6/513 (1%)
 Frame = -2

Query: 1526 GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 1347
            G  Q + RA YK +VK PG  G L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTTGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 1346 ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPD 1179
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T     +++   
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVK 117

Query: 1178 NRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQ 999
              D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  KQ
Sbjct: 118  LPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQ 177

Query: 998  MTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFW 819
              G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++FW
Sbjct: 178  RVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFW 237

Query: 818  TKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLA 639
            TKYCRAEY  R+K                  LK+D+ILA+E R+KIR+VDPT+DM +D  
Sbjct: 238  TKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEG 297

Query: 638  DDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVA 459
            DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++A
Sbjct: 298  DDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALA 357

Query: 458  QGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 279
            + L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQA
Sbjct: 358  EALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQA 416

Query: 278  NGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTH 105
            N + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LTH
Sbjct: 417  NTLKA---SRDSQASMKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTH 473

Query: 104  YISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
             ISS + H GKN  + VL  LP   +  L   W
Sbjct: 474  NISSIKYHLGKNPRETVLDRLPSATKEKLLYHW 506


>ref|XP_006452716.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555942|gb|ESR65956.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 533

 Score =  413 bits (1061), Expect = e-112
 Identities = 228/513 (44%), Positives = 323/513 (62%), Gaps = 6/513 (1%)
 Frame = -2

Query: 1526 GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 1347
            G  Q + RA YK +VK PG  G L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTTGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 1346 ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPD 1179
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T     +++   
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVK 117

Query: 1178 NRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQ 999
              D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  KQ
Sbjct: 118  LPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQ 177

Query: 998  MTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFW 819
              G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++FW
Sbjct: 178  RVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFW 237

Query: 818  TKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLA 639
            TKYCRAEY  R+K                  LK+D+ILA+E R+KIR+VDPT+DM +D  
Sbjct: 238  TKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEG 297

Query: 638  DDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVA 459
            DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++A
Sbjct: 298  DDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALA 357

Query: 458  QGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 279
            + L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQA
Sbjct: 358  EALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQA 416

Query: 278  NGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTH 105
            N + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LTH
Sbjct: 417  NTLKA---SRDSQASMKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTH 473

Query: 104  YISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
             ISS + H GKN  + VL  LP   +  L   W
Sbjct: 474  NISSIKYHLGKNPRETVLDRLPSATKEKLLYHW 506


>gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indica Group]
            gi|222640385|gb|EEE68517.1| hypothetical protein
            OsJ_26954 [Oryza sativa Japonica Group]
          Length = 625

 Score =  413 bits (1061), Expect = e-112
 Identities = 236/542 (43%), Positives = 337/542 (62%), Gaps = 34/542 (6%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MG++  ++ A YK T+K PG  GVL + E KFTF P+DPR  S MKL+V+F++IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPR--SAMKLNVDFRSIKGHKFN 56

Query: 1349 K---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 1185
            K      A  LLNL +D + KGGG++FEF N   R++ RD VAK+L K Q T P +   P
Sbjct: 57   KVDGSKPAPPLLNLSKD-SDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVP 115

Query: 1184 PDNR-----DVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 1020
            P+N      +  L+  +M+ RM++L+++S+LQKLH + V+G +L E+EFWA R++L+E+E
Sbjct: 116  PENSVTSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDE 175

Query: 1019 LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 840
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKK 235

Query: 839  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTV 660
            MS+ DFWTKY RAEY  R+K                  LK+D+ILA E R KI++VDPT+
Sbjct: 236  MSEKDFWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTL 295

Query: 659  DMASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 480
            DM +D  DDY HLP HGI+RD  +E ID D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 296  DMEADAGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 354

Query: 479  GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 303
             DT++VA+ + R  K   ++++   ++  R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  TDTKTVAEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 302  QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAV 129
            +YFDSQQAN + + G   D R A +  L  D+ +D L   +S +  NGL  P++   +A+
Sbjct: 415  EYFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVAL 474

Query: 128  K---------------------VLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKE 12
            K                     VL+ L   IS ++    KN +  +L  +P   ++ L +
Sbjct: 475  KKLMMKAAFEDHVDIQITCDWRVLNELNEGISRSRRLNLKNPQDSLLGQIPRRTRDELMD 534

Query: 11   QW 6
             W
Sbjct: 535  HW 536


>ref|XP_006452715.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
            gi|557555941|gb|ESR65955.1| hypothetical protein
            CICLE_v10007802mg [Citrus clementina]
          Length = 536

 Score =  410 bits (1054), Expect = e-112
 Identities = 226/502 (45%), Positives = 320/502 (63%), Gaps = 6/502 (1%)
 Frame = -2

Query: 1526 GTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSK 1347
            G  Q + RA YK +VK PG  G L + +QK  F+P++    S  KL V FK+I+ HK++K
Sbjct: 3    GAAQVTKRAKYKISVKDPGTTGALRMNDQKLMFMPDNRN--SGAKLVVEFKSIQGHKYTK 60

Query: 1346 ETAAQA-LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTP---QQAPPD 1179
            E + +  L+NL      +GG +IFEF ++ + +VCRD V+K+L K ++T     +++   
Sbjct: 61   EGSNKPPLINLAN---AQGGSYIFEFDSYSDLHVCRDFVSKVLEKSKETPNAALEKSAVK 117

Query: 1178 NRDVLLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQ 999
              D  L+ E+M+ R+++L++NS+LQKLH + V G +LTEAEFWA R+ L++ + SK  KQ
Sbjct: 118  LPDEQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDRDPSKKSKQ 177

Query: 998  MTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFW 819
              G KSAM++D+      ++N V F LTPEII QIFAEKPAV +A+L  VP KM++++FW
Sbjct: 178  RVGFKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFW 237

Query: 818  TKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLA 639
            TKYCRAEY  R+K                  LK+D+ILA+E R+KIR+VDPT+DM +D  
Sbjct: 238  TKYCRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEG 297

Query: 638  DDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVA 459
            DDYTHLP HGI RD  +E  +  +   +RT L+D+NRHAAVVLEG+T+       TR++A
Sbjct: 298  DDYTHLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALA 357

Query: 458  QGLVRVNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQA 279
            + L R  +G     D  ++E R +R   + +IEDLQ P  L  A L IKD R+YFDSQQA
Sbjct: 358  EALARSKRGNEG-ADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQA 416

Query: 278  NGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTH 105
            N + A    RD + +   +L   E Y S+ +A+S + + GL DPI+NP++A+KV   LTH
Sbjct: 417  NTLKA---SRDSQASMKCSLSRQEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTH 473

Query: 104  YISSTQPHKGKNAEKDVLSSLP 39
             ISS + H GKN  + VL  LP
Sbjct: 474  NISSIKYHLGKNPRETVLDRLP 495


>ref|XP_004972829.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like isoform X1 [Setaria italica]
          Length = 600

 Score =  409 bits (1051), Expect = e-111
 Identities = 230/519 (44%), Positives = 333/519 (64%), Gaps = 11/519 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MG+L  ++ A YK T+K PG PG+L + + KFTF PNDPR  S MKL+V F++IK HKF+
Sbjct: 1    MGSL--TIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPR--SAMKLNVEFRSIKGHKFN 56

Query: 1349 KETAAQ-ALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAPPDNR 1173
            K    + ALLNL +D + KGGG++FEF N   R++CRD VA++L K+Q   P+   P   
Sbjct: 57   KVDGNKPALLNLSKD-SDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGMPPRPTMPPEI 115

Query: 1172 DV------LLNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSK 1011
             V       L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++  +K
Sbjct: 116  SVPSAGMEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDVANK 175

Query: 1010 NKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSD 831
              KQ  G K+AM     S DG ++N V F+LTPE+I+QIFAEKPAVR+A+L  VP+KM+D
Sbjct: 176  ASKQKPGFKTAMSDVRPSADG-RTNKVTFNLTPEMIHQIFAEKPAVRRAFLDFVPKKMTD 234

Query: 830  VDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMA 651
            ++FW KYCRAEY  R+K                  LK+D+IL  E + KI++VDPT+DM 
Sbjct: 235  LEFWRKYCRAEYLLRTKNTAAAAAEAAEDEELAVFLKNDDILVKEAKLKIKQVDPTLDME 294

Query: 650  SDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDT 471
            +D  DDY HLP HGILRD  +E +D D+   +RT  +++NRHAAVVLEG   S+ +  D 
Sbjct: 295  ADAGDDYIHLPDHGILRDGSKETVDNDSEFARRTLSQELNRHAAVVLEG-IASDVELTDA 353

Query: 470  RSVAQGLVRVNKGKANT--VDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 297
            +SVA+ L R  K   +T  VD  S ER   +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 354  KSVAEALARSKKEPPSTSAVDDTSHERLL-KVARMTEIEDLQAPRSLPYAPLCIKDPREY 412

Query: 296  FDSQQANGMYAQGEKRDFRTAEH--FNLDETYDSLANAVSRVGENGLKDPIMNPQLAVKV 123
            FDSQQAN + + G   D R + +   +++E +  L + +S +  N     ++   +AVKV
Sbjct: 413  FDSQQANALRSLGASNDGRKSRNCSLSIEEAFHHLTDQISSIKVNKSNCTVIQSDMAVKV 472

Query: 122  LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            L+ L   IS ++    KN ++ +L  +P   ++ L + W
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGRVPQHTRDELMDHW 511


>ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [Sorghum bicolor]
            gi|241940216|gb|EES13361.1| hypothetical protein
            SORBIDRAFT_07g003540 [Sorghum bicolor]
          Length = 600

 Score =  408 bits (1048), Expect = e-111
 Identities = 228/519 (43%), Positives = 335/519 (64%), Gaps = 11/519 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MG++  ++ A YK T+K PG PG+L + + +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNDDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 1349 K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPD 1179
            K E    ALLNL ++   K GG+IFEF N   R++CRD VA++L K+Q T P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPPRPTVAPE 114

Query: 1178 NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 1014
            N         L+V ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSVAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 1013 KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 834
            K  KQ  G K++++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KM 
Sbjct: 175  KRSKQRAGFKNSLVDIKPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDYVPKKMV 233

Query: 833  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDM 654
            +  FW KYCRAEY +R+K                  LK+D+ILA E   +I++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLFRTKNTAAATAEAAGDEELAIFLKNDDILAKEFWLQIKRVDPTLDM 293

Query: 653  ASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 474
             +D  DDY HLP HGI RD  +E ID D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGNKETIDADSELARRTLSQDLNRHAAVVLEGRSL-DVESTD 352

Query: 473  TRSVAQGLVRVNKGKANT-VDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 297
             +++A+ L R  K   +T +D  ++  R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSIDDDANHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREY 412

Query: 296  FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 123
            FDSQQAN + + G   D R A   +L  +E +  L + +S +  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNDGRKARTCSLSTEEAFHHLMDQMSSIKVNKLNCPIIQSDMALKV 472

Query: 122  LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            L+ L   IS ++    KN ++ +L  LP   ++ L + W
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHW 511


>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  406 bits (1044), Expect = e-110
 Identities = 237/522 (45%), Positives = 332/522 (63%), Gaps = 14/522 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MGT+  ++ A YK T+K PG  GVL ++E K  F PNDPR  S MKL V+F++IK HKF+
Sbjct: 1    MGTM--TIGAKYKTTLKDPGHGGVLRMSEDKLIFTPNDPR--SLMKLSVDFRSIKGHKFN 56

Query: 1349 KETAAQA---LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 1185
            K   ++    LLNL +  + KGGG+IFEF N   R++CRD VA++L K+Q T P +   P
Sbjct: 57   KVDGSKPTPPLLNLSK-VSDKGGGYIFEFDNVGNRDLCRDFVARVLGKHQGTVPARPNVP 115

Query: 1184 PDNRDVLLNVE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 1020
            P+   V    E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E
Sbjct: 116  PEKLAVSTGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDE 175

Query: 1019 LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 840
             +K+ KQ  G KSAMLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  TNKSSKQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAEKPAVHRAFLDYVPKK 235

Query: 839  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTV 660
            +S+ DFWTKYCRAEY  R+K                  LK+D+ILA E + KI++VDPT+
Sbjct: 236  LSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAMFLKNDDILAKEAKLKIKRVDPTL 295

Query: 659  DMASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 480
            DM +D  DDY HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG++ ++ + 
Sbjct: 296  DMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRS-TDIES 354

Query: 479  GDTRSVAQGLVRVNK--GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDP 306
             DT++VA+ L R  K    ++  D  S ER   +   MT++EDLQ P++L +A LCIKDP
Sbjct: 355  TDTKTVAEALARSKKEPPPSSVADDASHERLV-KAARMTELEDLQAPRSLPYAPLCIKDP 413

Query: 305  RQYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLA 132
            R+YFDSQQAN +   G   D R A   +L  D+ +  L + +S V  N    P++   +A
Sbjct: 414  REYFDSQQANALRPLG-NNDGRKARSCSLSADDAFRHLMDQISSVKMN---CPVVQADVA 469

Query: 131  VKVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            +KVL+ L   IS ++    KN +  +L  LP   ++ L + W
Sbjct: 470  LKVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHW 511


>gb|EOY33213.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins) isoform 3 [Theobroma
            cacao]
          Length = 549

 Score =  404 bits (1038), Expect = e-110
 Identities = 229/507 (45%), Positives = 314/507 (61%), Gaps = 7/507 (1%)
 Frame = -2

Query: 1505 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA- 1329
            RA YK T+K PG PG L +T +K  F+P++P++    KLDV F+ IK  K +KE +++  
Sbjct: 9    RAKYKTTIKDPGTPGTLRMTLEKILFVPHNPKSAG--KLDVEFRFIKGQKHTKEGSSKPP 66

Query: 1328 LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTT--PQQAPPDNRDVLLNV 1155
             LNL  +   + G FIFEF N+ +   CRD V K+LAK  + +  P    PD +   L+ 
Sbjct: 67   WLNLTNN---QNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTYPDEQ---LSA 120

Query: 1154 EDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAM 975
             +ME R+++LR++S+LQKLH + V+  VLTEAEFWA R+ L++ E +K  KQ  G KSAM
Sbjct: 121  AEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAM 180

Query: 974  LADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEY 795
            ++D+  +   ++N V F+LTPEII QIFAEKPAV +A+L  VP KMS+ DFWTKY RAEY
Sbjct: 181  ISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEY 240

Query: 794  FYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPG 615
             + +K                  LK D+ILA E+R KIR+VDPT+DM +D  DDYTHLP 
Sbjct: 241  LHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPD 300

Query: 614  HGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNK 435
            HGI RD  +E  + +    +RT  +DINRHAAVVLEG+ + + +  DTRSVA+ L R  +
Sbjct: 301  HGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAV-DVELEDTRSVAEALARSKQ 359

Query: 434  GKANTVDKLSDERRK--NRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQ 261
              +   +   D  R+  +RV  MT+IEDLQ P  L  A LCIKDPR YFDSQQ N +   
Sbjct: 360  ESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVNALRTS 419

Query: 260  GEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYISSTQ 87
            G++         +L   E Y SL  ++S +   GLKDPI+ P++A +V D LT  IS+T+
Sbjct: 420  GDELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQSISTTK 479

Query: 86   PHKGKNAEKDVLSSLPIIEQNALKEQW 6
             + GKN ++ VL  LP   +  L   W
Sbjct: 480  YNIGKNPQESVLDRLPKKIKEELLHHW 506


>gb|EOY33211.1| BSD domain (BTF2-like transcription factors, Synapse-associated
            proteins and DOS2-like proteins), putative isoform 1
            [Theobroma cacao]
          Length = 646

 Score =  404 bits (1038), Expect = e-110
 Identities = 229/507 (45%), Positives = 314/507 (61%), Gaps = 7/507 (1%)
 Frame = -2

Query: 1505 RATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFSKETAAQA- 1329
            RA YK T+K PG PG L +T +K  F+P++P++    KLDV F+ IK  K +KE +++  
Sbjct: 9    RAKYKTTIKDPGTPGTLRMTLEKILFVPHNPKSAG--KLDVEFRFIKGQKHTKEGSSKPP 66

Query: 1328 LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTT--PQQAPPDNRDVLLNV 1155
             LNL  +   + G FIFEF N+ +   CRD V K+LAK  + +  P    PD +   L+ 
Sbjct: 67   WLNLTNN---QNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTYPDEQ---LSA 120

Query: 1154 EDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELSKNKKQMTGLKSAM 975
             +ME R+++LR++S+LQKLH + V+  VLTEAEFWA R+ L++ E +K  KQ  G KSAM
Sbjct: 121  AEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAM 180

Query: 974  LADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMSDVDFWTKYCRAEY 795
            ++D+  +   ++N V F+LTPEII QIFAEKPAV +A+L  VP KMS+ DFWTKY RAEY
Sbjct: 181  ISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEY 240

Query: 794  FYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDMASDLADDYTHLPG 615
             + +K                  LK D+ILA E+R KIR+VDPT+DM +D  DDYTHLP 
Sbjct: 241  LHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPD 300

Query: 614  HGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGDTRSVAQGLVRVNK 435
            HGI RD  +E  + +    +RT  +DINRHAAVVLEG+ + + +  DTRSVA+ L R  +
Sbjct: 301  HGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAV-DVELEDTRSVAEALARSKQ 359

Query: 434  GKANTVDKLSDERRK--NRVHEMTKIEDLQGPQTLSFASLCIKDPRQYFDSQQANGMYAQ 261
              +   +   D  R+  +RV  MT+IEDLQ P  L  A LCIKDPR YFDSQQ N +   
Sbjct: 360  ESSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVNALRTS 419

Query: 260  GEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKVLDNLTHYISSTQ 87
            G++         +L   E Y SL  ++S +   GLKDPI+ P++A +V D LT  IS+T+
Sbjct: 420  GDELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQSISTTK 479

Query: 86   PHKGKNAEKDVLSSLPIIEQNALKEQW 6
             + GKN ++ VL  LP   +  L   W
Sbjct: 480  YNIGKNPQESVLDRLPKKIKEELLHHW 506


>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Brachypodium distachyon]
          Length = 602

 Score =  404 bits (1037), Expect = e-110
 Identities = 230/521 (44%), Positives = 328/521 (62%), Gaps = 13/521 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MGT+  ++ A YK T+K PG  GVL + E K  FIPNDPR  S MKL+V+F+ IK HKF+
Sbjct: 1    MGTM--TIGAKYKTTLKDPGTTGVLRMNEDKLAFIPNDPR--SLMKLNVDFRTIKGHKFN 56

Query: 1349 KETAAQA---LLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--AP 1185
            K   ++    LLNL +D + KGGG++FEF N   R++CRD VA++L K+Q   P +  AP
Sbjct: 57   KVDGSKPTPPLLNLSKD-SDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGIVPPRPNAP 115

Query: 1184 PDNRDVLLNVE-----DMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 1020
            P+        E     +ME RM++LR++S+LQKLH + V+G +L E+EFWA R++L+++E
Sbjct: 116  PEKSVAAAGPEQLSSAEMERRMKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDE 175

Query: 1019 LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 840
             +   KQ  G +S MLAD+  +   Q+N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 176  ANTASKQKPGFRSVMLADVRPSADGQTNKVTFSLTNEIIHQIFAEKPAVHRAFLDYVPKK 235

Query: 839  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTV 660
            +S+ DFWTKYCRAEY  R+K                  L++D+I+A E + KI++VDPT+
Sbjct: 236  LSEKDFWTKYCRAEYLLRTKNTLAAKAEAADDEELAIFLRNDDIVAKEAKLKIKRVDPTL 295

Query: 659  DMASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 480
            DM +D  DDY HLP HGILRD  RE  D D+   +RT  +D+NRHAAVVLEG+  ++ + 
Sbjct: 296  DMEADAGDDYIHLPDHGILRDGSRETTDTDSELARRTLSQDLNRHAAVVLEGRK-TDVEI 354

Query: 479  GDTRSVAQGLVR-VNKGKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 303
             D ++VA+ L R   +   +++   +   R  +V  MT+IEDLQ P++L +A LCIKDPR
Sbjct: 355  ADAKTVAEALARSKTETPCSSIADDASHERLLKVARMTEIEDLQAPRSLPYAPLCIKDPR 414

Query: 302  QYFDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAV 129
            +YFDSQQAN +   G   D R A   +L  D+ +  L + +S V  N L  P++   +A+
Sbjct: 415  EYFDSQQANPLRPLG--GDGRKARSCSLSTDDAFRHLMDQISSVKVNKLSCPVVQSNVAL 472

Query: 128  KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            KVL+ L   IS ++    KN +  +L  LP   ++ L + W
Sbjct: 473  KVLNELNEGISRSRRLNLKNPQDSLLGRLPHRTRDELMDHW 513


>gb|ACG24327.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  404 bits (1037), Expect = e-110
 Identities = 229/519 (44%), Positives = 329/519 (63%), Gaps = 11/519 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MG++  ++ A YK T+K PG PG+L +   +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 1349 K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPD 1179
            K E    ALLNL ++   K GG+IFEF N   R+ CRD VA++L K+Q   P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDQCRDFVARVLGKHQGIVPPRPTVAPE 114

Query: 1178 NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 1014
            N         L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 1013 KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 834
            K  KQ  G KSA++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KMS
Sbjct: 175  KRSKQKPGFKSALVDIRPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMS 233

Query: 833  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDM 654
            +  FW KYCRAEY  R+K                  LK+D+ILA E + KI++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLVRTKNTAAATAEAAGNEELAIFLKNDDILAKEAKLKIKRVDPTLDM 293

Query: 653  ASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 474
             +D  DDY HLP HGI RD  +E +D D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNRHAAVVLEGRSL-DVESSD 352

Query: 473  TRSVAQGLVRVNKGKANTVDKLSD-ERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 297
             +++A+ L R  K   +T +   D   R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSNVDDDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREY 412

Query: 296  FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 123
            FDSQQAN + + G     R A   +L  +E +  L + +S V  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKV 472

Query: 122  LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            L+ L   IS ++    KN ++ +L  LP   ++ L + W
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHW 511


>gb|AFW61224.1| BSD domain containing protein [Zea mays]
          Length = 600

 Score =  403 bits (1035), Expect = e-109
 Identities = 229/519 (44%), Positives = 329/519 (63%), Gaps = 11/519 (2%)
 Frame = -2

Query: 1529 MGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHKFS 1350
            MG++  ++ A YK T+K PG PG+L +   +FTF PNDPR  S MK +V+F+ IK HKF+
Sbjct: 1    MGSM--TIGAKYKTTIKDPGTPGILRMNGDRFTFTPNDPR--SAMKFNVDFRTIKGHKFN 56

Query: 1349 K-ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQ--APPD 1179
            K E    ALLNL ++   K GG+IFEF N   R+ CRD VA++L K+Q   P +    P+
Sbjct: 57   KVEGNKAALLNLSKED--KAGGYIFEFDNVGNRDQCRDFVARVLGKHQGIVPPRPTVAPE 114

Query: 1178 NRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEELS 1014
            N         L+  ++E R+++LR++S+LQKLH + V+G +L E+EFWA R++L+++E +
Sbjct: 115  NSVASAALEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDEAN 174

Query: 1013 KNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQKMS 834
            K  KQ  G KSA++    +TDG ++N V F +TPE+I+QIFAEKPAVR+AYL  VP+KMS
Sbjct: 175  KRSKQKPGFKSALVDIRPTTDG-RTNKVTFQITPEMIHQIFAEKPAVRRAYLDFVPKKMS 233

Query: 833  DVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTVDM 654
            +  FW KYCRAEY  R+K                  LK+D+ILA E + KI++VDPT+DM
Sbjct: 234  ETRFWEKYCRAEYLVRTKNTAAATAEAAGDEELAIFLKNDDILAKEAKLKIKRVDPTLDM 293

Query: 653  ASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDFGD 474
             +D  DDY HLP HGI RD  +E +D D+   +RT  +D+NRHAAVVLEG++L + +  D
Sbjct: 294  EADTGDDYIHLPDHGIHRDGSKETVDADSELARRTLSQDLNRHAAVVLEGRSL-DVESTD 352

Query: 473  TRSVAQGLVRVNKGKANTVDKLSD-ERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPRQY 297
             +++A+ L R  K   +T +   D   R  +V  MT+IEDLQ P++L +A LCIKDPR+Y
Sbjct: 353  PKTLAEALARSKKEPPSTSNVDDDNHERLMKVARMTEIEDLQAPRSLLYAPLCIKDPREY 412

Query: 296  FDSQQANGMYAQGEKRDFRTAEHFNL--DETYDSLANAVSRVGENGLKDPIMNPQLAVKV 123
            FDSQQAN + + G     R A   +L  +E +  L + +S V  N L  PI+   +A+KV
Sbjct: 413  FDSQQANALRSLGGSNGGRKAHSCSLSTEEVFHHLMDQMSSVKVNRLNCPIVQSDMALKV 472

Query: 122  LDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            L+ L   IS ++    KN ++ +L  LP   ++ L + W
Sbjct: 473  LNELNEGISRSRRLNLKNPQEGLLGQLPQHTRDELMDHW 511


>ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Oryza brachyantha]
          Length = 621

 Score =  401 bits (1030), Expect = e-109
 Identities = 226/521 (43%), Positives = 325/521 (62%), Gaps = 11/521 (2%)
 Frame = -2

Query: 1535 EKMGTLQKSMRATYKPTVKHPGVPGVLTLTEQKFTFIPNDPRAPSNMKLDVNFKNIKTHK 1356
            E++   +++   + + T K   +     + E KFTF PNDPR  S MKL+V+F++IK HK
Sbjct: 19   EELNNFKRNEVWSLEKTPKQNVIGTKCRMNEDKFTFTPNDPR--SAMKLNVDFRSIKGHK 76

Query: 1355 FSK---ETAAQALLNLMQDPAIKGGGFIFEFVNFEERNVCRDLVAKILAKYQQTTPQQAP 1185
            F+K      A  LLNL +D + KGGG+IFEF N   R++ RD VA++L K Q T P   P
Sbjct: 77   FNKVDGNKPAPPLLNLSKD-SDKGGGYIFEFENVTSRDLSRDFVARVLGKQQGTIP---P 132

Query: 1184 PDNRDVL-----LNVEDMECRMQILRKNSDLQKLHYELVMGKVLTEAEFWAGRQHLIEEE 1020
            P+N         L+  +M+ RM++L ++S+LQKLH +LV+G +L E+EFWA R++L+++E
Sbjct: 133  PENSVTSTDPEQLSAAEMQRRMKLLHEDSELQKLHRKLVIGNILQESEFWATRKNLLDDE 192

Query: 1019 LSKNKKQMTGLKSAMLADMHSTDGSQSNSVKFDLTPEIIYQIFAEKPAVRQAYLKNVPQK 840
             +K  KQ  G KSAMLAD+  +   ++N V F LT EII+QIFAEKPAV +A+L  VP+K
Sbjct: 193  ANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLNFVPKK 252

Query: 839  MSDVDFWTKYCRAEYFYRSKTXXXXXXXXXXXXXXXXXLKDDEILADETRRKIRKVDPTV 660
            MS+ DFWTKY RAEY  R+K                  LK+D+ILA E R KI++VDPT+
Sbjct: 253  MSEKDFWTKYFRAEYLLRTKNTVAAAAEAAEDEELAVFLKNDDILAKEARLKIKRVDPTL 312

Query: 659  DMASDLADDYTHLPGHGILRDPGREYIDEDANQPKRTFLKDINRHAAVVLEGQTLSESDF 480
            DM +D  DDY HLP HGI+RD  +E I+ D    +RT  +D+NRHAAVVLEG++ S+ + 
Sbjct: 313  DMEADAGDDYIHLPDHGIIRDGSKETIENDGELARRTLSQDLNRHAAVVLEGRS-SDVEL 371

Query: 479  GDTRSVAQGLVRVNK-GKANTVDKLSDERRKNRVHEMTKIEDLQGPQTLSFASLCIKDPR 303
             DT++VA+ L R  +    +++   +   R  +V  MT+IEDLQ P+++ +A LCIKDPR
Sbjct: 372  TDTKTVAEALARSKREPPPSSISDDTSHERLVKVARMTEIEDLQAPRSVPYAPLCIKDPR 431

Query: 302  QYFDSQQANGMYAQGEKRDFRTAEHFNLD--ETYDSLANAVSRVGENGLKDPIMNPQLAV 129
            +YFDSQQAN + + G   D R A +  L   + +D L   +S +  NGL  P++   +A 
Sbjct: 432  EYFDSQQANALRSLGGNNDGRHARNCRLSAHDAFDHLLGQISSIKVNGLNYPVVQSDVAF 491

Query: 128  KVLDNLTHYISSTQPHKGKNAEKDVLSSLPIIEQNALKEQW 6
            KVL+ L   IS T+    KN +  +L  +P   ++ L + W
Sbjct: 492  KVLNELNDGISRTRRLNLKNPQDSLLGQIPRHTRDELMDHW 532