BLASTX nr result
ID: Ephedra27_contig00013048
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra27_contig00013048 (820 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [A... 217 5e-54 ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [A... 205 2e-50 ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 204 4e-50 ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 202 9e-50 gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] 197 3e-48 gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L... 197 4e-48 ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu... 197 5e-48 ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 196 8e-48 ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutr... 192 9e-47 dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila] 192 9e-47 gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot... 192 1e-46 dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] 192 1e-46 ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 192 2e-46 ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 192 2e-46 ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 192 2e-46 ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 192 2e-46 gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] 192 2e-46 ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 191 2e-46 gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] 188 2e-45 ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu... 188 2e-45 >ref|XP_006842072.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda] gi|548844121|gb|ERN03747.1| hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda] Length = 1207 Score = 217 bits (552), Expect = 5e-54 Identities = 122/278 (43%), Positives = 166/278 (59%), Gaps = 8/278 (2%) Frame = +3 Query: 6 LKVHEGSETYSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDD 176 LKVH G + R R+ P +F K+++GSL + E+ V W+ VDFHVDP+D Sbjct: 110 LKVHVGMNSSFRVAWRKTTLPIKFENCKVQIGSLFSWSEFWVGWEGPNLGVDFHVDPYDG 169 Query: 177 CCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPS 356 C +F TKD FS +D VI C+ K+EF + RDI+ V E+ ++ + ++L P Sbjct: 170 TCGVFFTKDITFSIKDSNQKVVIKCDMKLEFPI-RDIQWVHFFQEQASLGMLVQLSSSPL 228 Query: 357 IYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKR 536 IYYRT +DD HVTVPF LLDD+DPWIRT DFT N A GRC CY+IS SPR G ME+A+ Sbjct: 229 IYYRTDNDDTHVTVPFLLLDDEDPWIRTTDFTGNGAVGRCRCYKISFSPRYGLKMEKARD 288 Query: 537 YFSRYHLLGETV-ERVF---DSSLRVRPE-GHVVPRGLLFFTIPNQKWIRFESQYLLNGL 701 YF +L V ++V D +V E G + P FF++ Q+ + FE YL+ L Sbjct: 289 YFRECRILEHGVLQKVLGPQDYPPKVSTEPGFMKPMRNHFFSVNIQEGLSFEVVYLVTCL 348 Query: 702 IHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHS 815 +HKGI+N H L F+ +L S + +T ALRHM+S Sbjct: 349 VHKGIINQHRLCKEFFDLLRSQSPEV--NTAALRHMYS 384 >ref|XP_006842073.1| hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda] gi|548844122|gb|ERN03748.1| hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda] Length = 1207 Score = 205 bits (521), Expect = 2e-50 Identities = 118/278 (42%), Positives = 165/278 (59%), Gaps = 8/278 (2%) Frame = +3 Query: 6 LKVHEGSETYSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQ--DI-VDFHVDPFDD 176 LK H G + R RR+ P F K+++GSL + E+LV W+ D+ V+FHVDP+D Sbjct: 110 LKAHVGMNSSFRVARRKTTPPNVFKNCKVQIGSLFSESEFLVGWEGPDLGVNFHVDPYDG 169 Query: 177 CCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPS 356 C I +D +FS +D + VI C+ K+EF V RDI+ V E+ ++ + ++L P Sbjct: 170 TCGICFPRDIVFSVKDTNHKAVIKCDLKLEFPV-RDIQWVHFFEEQTSLGMLMQLSSSPL 228 Query: 357 IYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKR 536 IYYRT +DD HVTVPF LLDD+DPWIRT DF+ N A GRC CY+IS SPR G E+A+ Sbjct: 229 IYYRTDNDDTHVTVPFPLLDDEDPWIRTTDFSVNGALGRCHCYKISFSPRHGLIREKARD 288 Query: 537 YFSRYHLLGETVERVFDSSLRVRPE-----GHVVPRGLLFFTIPNQKWIRFESQYLLNGL 701 YF +L V + SL P+ G + FF++ Q+ + FE YL+ L Sbjct: 289 YFRECRILEHEVLQKDLGSLGYPPKVTTEHGFMEQMRDHFFSVNIQQGLCFEIVYLVTCL 348 Query: 702 IHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHS 815 +HKGI+N H L F+ +L S+ + +T ALRHM+S Sbjct: 349 VHKGIINQHRLCKEFFDLLRSQSSEV--NTAALRHMYS 384 >ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera] Length = 1197 Score = 204 bits (518), Expect = 4e-50 Identities = 120/279 (43%), Positives = 163/279 (58%), Gaps = 8/279 (2%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 LKV G ET + QRRR PF+F ++E+G LV+ +EY W+ VDF VDPFD Sbjct: 108 LKVSLGPETPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 C+ TKD FS + VI C FK+EF V R+I V+ + +++L ++L P Sbjct: 168 GTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLV-REINEVRQRRDMSSLILLLQLSSSP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 +YYRTADDDI TVPF LLDDDDPWIRT DFT + A GRC YRIS+ PR G +++A Sbjct: 227 FVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAM 286 Query: 534 RYFSRYHLLGETVERVFDS---SLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGL 701 Y L V + DS LRVR E +P FF I +++ I F +L+N + Sbjct: 287 DY-----LRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAV 341 Query: 702 IHKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 +HKGI+N H L+D+F+ +L + + AL+H+ SY Sbjct: 342 MHKGIINQHQLSDKFFDLLRSQQKDI--NIAALKHICSY 378 >ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis] gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis] Length = 1203 Score = 202 bits (515), Expect = 9e-50 Identities = 112/275 (40%), Positives = 163/275 (59%), Gaps = 4/275 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 +KV G E + QRRR PF+ + +E+G+LV+ +E+LV W+ VDF VDPFD Sbjct: 108 VKVSLGPENPFHLNQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 C+ T+D FS + VI C+FK+EF V RDI +K + +V+ ++L P Sbjct: 168 GKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLV-RDINEIKQYTDTSCLVILLQLASAP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 S++YRTADDDI V VPF LLDDDDPWIRT DFT + A GRC YR+S+ PR G +++A Sbjct: 227 SVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRAL 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKG 713 + + + + R + PE + +P FF I +++ + F +L+N ++HKG Sbjct: 287 NFLRERRVQEDCLRRPL--HVTAEPE-YEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKG 343 Query: 714 ILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 I N H L+D F+ +L + PL + ALRH+ SY Sbjct: 344 IFNQHQLSDSFFDLL--RNQPLDVNIAALRHICSY 376 >gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis] Length = 1194 Score = 197 bits (502), Expect = 3e-48 Identities = 115/277 (41%), Positives = 161/277 (58%), Gaps = 5/277 (1%) Frame = +3 Query: 3 TLKVHEGSETYSRF-QRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPF 170 TLKV G ET R QRRR P + +E+G+LV +E+ VAW+ VDF VDPF Sbjct: 103 TLKVTLGPETLYRMNQRRRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPF 162 Query: 171 DDCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCP 350 D C+ T+D FS +D ++ C+FK+EF V RDI +K + +V+ + L Sbjct: 163 DGLCKFCFTRDTAFSFKDMAKLAMMKCDFKVEFLV-RDINEIKQYTDTSHLVVLLLLASS 221 Query: 351 PSIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQA 530 P ++YRTADDDI V+VPF LLDDDDPWIRT DFT + A GRC YR+S+ PR G +++A Sbjct: 222 PRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKA 281 Query: 531 KRYFSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTIPNQKWIRFESQYLLNGLIH 707 Y R + ET R +LR++ E VP F + + I FE +LLN ++H Sbjct: 282 MSYL-RERRVQETPLR---KALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVH 337 Query: 708 KGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 KGI N H+++D + + + P + AL+H+ SY Sbjct: 338 KGIFNQHNISDGLFDLF--RNQPREINLAALKHISSY 372 >gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus] Length = 1201 Score = 197 bits (501), Expect = 4e-48 Identities = 117/276 (42%), Positives = 166/276 (60%), Gaps = 5/276 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 LKV G + Y QRRR PF+ + +E+G+LV+PEE++VAW+ V+ VDPFD Sbjct: 108 LKVISGPQNPYFLNQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 CR+ ++D FS + + VI C+FK+EF V RDI V+ + V+ + L P Sbjct: 168 RMCRLRFSRDTAFSIKQNEKKAVIKCDFKVEFMV-RDIYEVRRYDDTSYRVVLLHLASSP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI +V F LLDDDDPWIRT DFT + A GRC YRIS+ PR G + +A Sbjct: 227 LVWYRTADDDIEESVSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAM 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHK 710 Y + + ++R LR++ E + VP FF I Q+ I F+ +L+N +IHK Sbjct: 287 AYLNFQRVQEFPLKR----PLRIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVIHK 342 Query: 711 GILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 GILN +SL+DRF+ +L + P + AL+H+ SY Sbjct: 343 GILNPYSLSDRFFEVL--RNQPQEVNVAALKHLCSY 376 >ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1198 Score = 197 bits (500), Expect = 5e-48 Identities = 110/276 (39%), Positives = 162/276 (58%), Gaps = 5/276 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 LK G E ++ QRRR PF+ + +E+G+LV+ +E+ V W+ VDF VDPFD Sbjct: 108 LKASLGPENPFTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 CR +++ FS + VI C+FK+EF V RDI +K E +VL ++L P Sbjct: 168 GTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLV-RDINEIKQYTETSCLVLLLQLASAP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI V+VPF LLDDDDPWIRT DFT + A GRC YR+S+ PR G + +A Sbjct: 227 RVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAV 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHK 710 + + E + R +R+R E +P FF I +++ I F+ +L+N ++HK Sbjct: 287 DFLKERRVQEEYLRR----PIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHK 342 Query: 711 GILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 GI N H L++ F+ +L + P + AL+H++ Y Sbjct: 343 GIFNQHQLSNDFFDLL--RNQPTEVNVAALKHIYPY 376 >ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine max] gi|571459266|ref|XP_006581359.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Glycine max] Length = 1204 Score = 196 bits (498), Expect = 8e-48 Identities = 115/276 (41%), Positives = 158/276 (57%), Gaps = 5/276 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 LKV G E Y QRRR PF+ + +E+G+LV+P E+ V+W+ V F VDPFD Sbjct: 108 LKVSCGPENPYFLNQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 CR ++D FS + + VI C+F++ F V RDI +K + +V+ + L P Sbjct: 168 GMCRFCFSRDTAFSFKGIEKKAVIKCDFQVGFLV-RDINEIKRYNDTSYLVVLLHLASSP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI +VPF LLDDDDPWIRT DFT + A GRC YRIS+ PR G + +A Sbjct: 227 WVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAM 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHK 710 Y + + E +LR E VP FF I QK I F+ +L+N ++HK Sbjct: 287 LYLKGQRV--QMQELALKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHK 344 Query: 711 GILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 GI N H L+DRF+ +L + P + AL+H+ SY Sbjct: 345 GIFNQHRLSDRFFELL--KNQPKELNVAALKHLCSY 378 >ref|XP_006404133.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum] gi|557105252|gb|ESQ45586.1| hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum] Length = 927 Score = 192 bits (489), Expect = 9e-47 Identities = 112/274 (40%), Positives = 161/274 (58%), Gaps = 3/274 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQ-DIVDFHVDPFDDC 179 LKV G E Y+ QRRR P + + +E+G+LV+ +E+LV+W+ + VDF VDPFD+ Sbjct: 124 LKVSLGPENPYTLNQRRRTTTPLKLSGISVEIGTLVSRDEFLVSWRAEKVDFLVDPFDNT 183 Query: 180 CRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSI 359 CR TK FS +D VI C++K+E V RDI++V+ VL ++L P + Sbjct: 184 CRFCFTKSTAFSLKDTMRHAVINCDYKLELLV-RDIRTVRQYRASDGFVLLLQLASSPRV 242 Query: 360 YYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRY 539 +YRTADDDI+ T P LLDDDDPWIRT DFT A GRCL YR+ LSPR + + A Y Sbjct: 243 WYRTADDDIYETCPVDLLDDDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDY 302 Query: 540 FSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKGI 716 R + E V + +R P G V FF I +++ I FE +L+N ++H+G+ Sbjct: 303 LRRQRVKEERVR--WPPRIRDEPGFGEAVSDH--FFCIHHKEGISFEIMFLVNSVLHRGV 358 Query: 717 LNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 LN L +RF+ +L + P + +L+H+ +Y Sbjct: 359 LNQFQLTERFFDLL--RNQPKDVNIASLKHLCTY 390 >dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila] Length = 998 Score = 192 bits (489), Expect = 9e-47 Identities = 112/274 (40%), Positives = 161/274 (58%), Gaps = 3/274 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQ-DIVDFHVDPFDDC 179 LKV G E Y+ QRRR P + + +E+G+LV+ +E+LV+W+ + VDF VDPFD+ Sbjct: 108 LKVSLGPENPYTLNQRRRTTTPLKLSGISVEIGTLVSRDEFLVSWRAEKVDFLVDPFDNT 167 Query: 180 CRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSI 359 CR TK FS +D VI C++K+E V RDI++V+ VL ++L P + Sbjct: 168 CRFCFTKSTAFSLKDTMRHAVINCDYKLELLV-RDIRTVRQYRASDGFVLLLQLASSPRV 226 Query: 360 YYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRY 539 +YRTADDDI+ T P LLDDDDPWIRT DFT A GRCL YR+ LSPR + + A Y Sbjct: 227 WYRTADDDIYETCPVDLLDDDDPWIRTTDFTQAGAIGRCLSYRVLLSPRYENKLISALDY 286 Query: 540 FSRYHLLGETVERVFDSSLRVRPE-GHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKGI 716 R + E V + +R P G V FF I +++ I FE +L+N ++H+G+ Sbjct: 287 LRRQRVKEERVR--WPPRIRDEPGFGEAVSDH--FFCIHHKEGISFEIMFLVNSVLHRGV 342 Query: 717 LNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 LN L +RF+ +L + P + +L+H+ +Y Sbjct: 343 LNQFQLTERFFDLL--RNQPKDVNIASLKHLCTY 374 >gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] Length = 1197 Score = 192 bits (488), Expect = 1e-46 Identities = 110/266 (41%), Positives = 155/266 (58%), Gaps = 4/266 (1%) Frame = +3 Query: 33 YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKD 203 Y QRRR PF+F+ +E+G LV+ ++++V W+ VDF VDPF+ C+I TKD Sbjct: 117 YRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKD 176 Query: 204 QLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSIYYRTADDD 383 FS R + +I C FK+EF V R+I +K + ++V+ ++L P ++YRTADDD Sbjct: 177 TAFSFRGEAKHAIIKCNFKIEFMV-REINEIKKFKDFTSLVILLQLASSPLVFYRTADDD 235 Query: 384 IHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRYFSRYHLLG 563 I +V F LLDDDD WIRT D T + A GRC YRIS+ PR G + E+A YFS + + Sbjct: 236 IEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRV-- 293 Query: 564 ETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLND 740 VE LRVR E V FF N+ I F+ +L+N ++HKGI+N H + + Sbjct: 294 PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTN 352 Query: 741 RFYRMLYPASTPLAQSTMALRHMHSY 818 F+ +L S + AL+HM SY Sbjct: 353 EFFYLL--RSHQEEVNLAALKHMFSY 376 >dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum] Length = 1197 Score = 192 bits (488), Expect = 1e-46 Identities = 109/266 (40%), Positives = 156/266 (58%), Gaps = 4/266 (1%) Frame = +3 Query: 33 YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKD 203 Y QRRR PF+F+ +E+G LV+ ++++V W+ VDF VDPF+ C+I TKD Sbjct: 117 YRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKD 176 Query: 204 QLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSIYYRTADDD 383 FS R + +I C FK+EF V R+I +K + ++V+ ++L P ++YRTADDD Sbjct: 177 TAFSFRGEARHAIIKCNFKIEFMV-REINEIKKCKDFTSLVILLQLASSPLVFYRTADDD 235 Query: 384 IHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRYFSRYHLLG 563 I +V F LLDDDD WIRT D T + A GRC YRIS+ PR G + E+A YFS + + Sbjct: 236 IEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRV-- 293 Query: 564 ETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLND 740 VE LRV+ E V FF N+ I F+ +L+N ++HKGI+N H + + Sbjct: 294 PMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTN 352 Query: 741 RFYRMLYPASTPLAQSTMALRHMHSY 818 F+ +L S ++ AL+HM SY Sbjct: 353 EFFYLL--RSRQEEVNSAALKHMFSY 376 >ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus sinensis] Length = 1025 Score = 192 bits (487), Expect = 2e-46 Identities = 111/275 (40%), Positives = 158/275 (57%), Gaps = 4/275 (1%) Frame = +3 Query: 6 LKVHEGSETYSRF-QRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDIV---DFHVDPFD 173 LKV G E R QR R PF+ +E+G+LV+ +E+ VAW+ DF VDPFD Sbjct: 108 LKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 C+ T+D F+ + VI CEFK+EF V R+I VK E + + ++L P Sbjct: 168 GTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLV-REINLVKQYSEFSCVAILLQLASSP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI V VPF +LDDDDPWIRT DFT + A GRC YRIS+S R + + Sbjct: 227 RVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVI 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKG 713 Y + +++ R ++R P+ VP FF I ++ I FE +L+N ++HKG Sbjct: 287 TYLGERRVQVDSLSRPI--TIREEPD-FEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKG 343 Query: 714 ILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 I+N H L+D F+ +L S + + AL+H++SY Sbjct: 344 IINQHQLSDSFFDLLRGQSREV--NVAALKHIYSY 376 >ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Citrus sinensis] Length = 1197 Score = 192 bits (487), Expect = 2e-46 Identities = 111/275 (40%), Positives = 158/275 (57%), Gaps = 4/275 (1%) Frame = +3 Query: 6 LKVHEGSETYSRF-QRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDIV---DFHVDPFD 173 LKV G E R QR R PF+ +E+G+LV+ +E+ VAW+ DF VDPFD Sbjct: 108 LKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 C+ T+D F+ + VI CEFK+EF V R+I VK E + + ++L P Sbjct: 168 GTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLV-REINLVKQYSEFSCVAILLQLASSP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI V VPF +LDDDDPWIRT DFT + A GRC YRIS+S R + + Sbjct: 227 RVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVI 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHVVPRGLLFFTIPNQKWIRFESQYLLNGLIHKG 713 Y + +++ R ++R P+ VP FF I ++ I FE +L+N ++HKG Sbjct: 287 TYLGERRVQVDSLSRPI--TIREEPD-FEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKG 343 Query: 714 ILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 I+N H L+D F+ +L S + + AL+H++SY Sbjct: 344 IINQHQLSDSFFDLLRGQSREV--NVAALKHIYSY 376 >ref|XP_004501325.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer arietinum] gi|502132369|ref|XP_004501326.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Cicer arietinum] Length = 1201 Score = 192 bits (487), Expect = 2e-46 Identities = 110/263 (41%), Positives = 157/263 (59%), Gaps = 5/263 (1%) Frame = +3 Query: 45 QRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFS 215 +RRR PF+ + +E+G+LV+PEE++VAW+ ++F VDPFD C++ +D FS Sbjct: 122 RRRRTATPFKMSDVIVEIGTLVSPEEFVVAWRGPDKGLNFLVDPFDSMCKLCFNRDTAFS 181 Query: 216 TRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSIYYRTADDDIHVT 395 + TVI C+FK+ F V RDI+ +K + +V+ + L P ++YRTADDDI + Sbjct: 182 FKGIAKTTVIKCDFKVGFLV-RDIEEIKRYDDTSHLVVLLHLASSPLVWYRTADDDIEES 240 Query: 396 VPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRYFSRYHLLGETVE 575 V LLDDDDPWIRT DFT + A GRC YRIS+ PR G + +A Y L + V+ Sbjct: 241 VTIDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLNKAMEY-----LRCQRVQ 295 Query: 576 RV-FDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFY 749 RV LR+ E VP FF I QK I F+ +L+N ++HKGI N +SL+ +F+ Sbjct: 296 RVPLKRPLRILNEPDFGVPMSSAFFYIDFQKDITFDIMFLINAIVHKGIFNQYSLSYKFF 355 Query: 750 RMLYPASTPLAQSTMALRHMHSY 818 +L S P + AL+H+ SY Sbjct: 356 ELL--RSQPKDVNVAALKHLCSY 376 >ref|XP_004501324.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer arietinum] Length = 1247 Score = 192 bits (487), Expect = 2e-46 Identities = 110/263 (41%), Positives = 157/263 (59%), Gaps = 5/263 (1%) Frame = +3 Query: 45 QRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKDQLFS 215 +RRR PF+ + +E+G+LV+PEE++VAW+ ++F VDPFD C++ +D FS Sbjct: 168 RRRRTATPFKMSDVIVEIGTLVSPEEFVVAWRGPDKGLNFLVDPFDSMCKLCFNRDTAFS 227 Query: 216 TRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSIYYRTADDDIHVT 395 + TVI C+FK+ F V RDI+ +K + +V+ + L P ++YRTADDDI + Sbjct: 228 FKGIAKTTVIKCDFKVGFLV-RDIEEIKRYDDTSHLVVLLHLASSPLVWYRTADDDIEES 286 Query: 396 VPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRYFSRYHLLGETVE 575 V LLDDDDPWIRT DFT + A GRC YRIS+ PR G + +A Y L + V+ Sbjct: 287 VTIDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLNKAMEY-----LRCQRVQ 341 Query: 576 RV-FDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLNDRFY 749 RV LR+ E VP FF I QK I F+ +L+N ++HKGI N +SL+ +F+ Sbjct: 342 RVPLKRPLRILNEPDFGVPMSSAFFYIDFQKDITFDIMFLINAIVHKGIFNQYSLSYKFF 401 Query: 750 RMLYPASTPLAQSTMALRHMHSY 818 +L S P + AL+H+ SY Sbjct: 402 ELL--RSQPKDVNVAALKHLCSY 422 >gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata] Length = 1197 Score = 192 bits (487), Expect = 2e-46 Identities = 111/266 (41%), Positives = 155/266 (58%), Gaps = 4/266 (1%) Frame = +3 Query: 33 YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKD 203 Y QRRR PF+F+ IE+G LV+ ++++V W+ VDF VDPF+ C+I TKD Sbjct: 117 YRLNQRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKD 176 Query: 204 QLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSIYYRTADDD 383 FS R + +I C FK+EF V R+I +K + ++V+ ++L P ++YRTADDD Sbjct: 177 TAFSFRGEARHAIIKCNFKIEFLV-REINEIKKCKDFTSLVILLQLASSPLVFYRTADDD 235 Query: 384 IHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRYFSRYHLLG 563 I +V F LLDDDD WIRT D T + A GRC YRIS+ PR G + E+A YFS + + Sbjct: 236 IEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRV-- 293 Query: 564 ETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLND 740 VE LRVR E V FF N+ I F+ +L+N ++HKGI+N H + + Sbjct: 294 PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVMFLVNAVLHKGIVNQHQMTN 352 Query: 741 RFYRMLYPASTPLAQSTMALRHMHSY 818 F+ +L S + AL+HM SY Sbjct: 353 EFFYLL--RSHQEEVNLAALKHMFSY 376 >ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine max] gi|571449461|ref|XP_006578148.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Glycine max] Length = 1204 Score = 191 bits (486), Expect = 2e-46 Identities = 111/276 (40%), Positives = 158/276 (57%), Gaps = 5/276 (1%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 LKV G + Y QRRR PF+ + +E+G+LV+P E+ V+W+ V F VDPFD Sbjct: 108 LKVSCGPKNPYFLNQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 CR ++D FS + VI C+F++ F V RDI ++ + +V+ + L P Sbjct: 168 GMCRFCFSRDTAFSFKGIDKKAVIKCDFQVGFLV-RDINEIRRYNDTSYLVVLLHLASSP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI +VPF LLDDDDPWIRT DFT + A GRC YRIS+ PR G + +A Sbjct: 227 WVWYRTADDDIEESVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAM 286 Query: 534 RYFSRYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHK 710 Y + + E +LR + E +P FF + QK I F+ +L+N ++HK Sbjct: 287 LYLKGQRV--QIQELPLKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHK 344 Query: 711 GILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 GI N H L+DRF+ +L + P + AL+H+ SY Sbjct: 345 GIFNQHRLSDRFFELL--RNQPKELNVAALKHLCSY 378 >gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa] Length = 1197 Score = 188 bits (477), Expect = 2e-45 Identities = 110/266 (41%), Positives = 154/266 (57%), Gaps = 4/266 (1%) Frame = +3 Query: 33 YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFDDCCRIFLTKD 203 Y QRRR PF+F+ +E+G LV+ +++V W+ VDF VDPF+ C+I TKD Sbjct: 117 YRLNQRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKD 176 Query: 204 QLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPPSIYYRTADDD 383 +FS R + +I C FK+EF V R+I +K + ++V+ ++L P ++YRTADDD Sbjct: 177 TVFSFRGEARHAIIKCNFKIEFLV-REINEIKKCKDFMSLVILLQLASSPLVFYRTADDD 235 Query: 384 IHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAKRYFSRYHLLG 563 I +V F LLDDDD WIRT D T + A GRC YRIS+ PR G + E+A YFS + + Sbjct: 236 IEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRV-- 293 Query: 564 ETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLIHKGILNYHSLND 740 VE LRVR E V FF N+ I F+ +L N ++HKGI+N H + + Sbjct: 294 PMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQNE-GISFKVLFLANAVLHKGIVNQHQMIN 352 Query: 741 RFYRMLYPASTPLAQSTMALRHMHSY 818 F+ +L S + AL+HM SY Sbjct: 353 EFFYLL--RSHQEEVNLAALKHMFSY 376 >ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] Length = 1200 Score = 188 bits (477), Expect = 2e-45 Identities = 110/278 (39%), Positives = 160/278 (57%), Gaps = 7/278 (2%) Frame = +3 Query: 6 LKVHEGSET-YSRFQRRRNINPFRFTKAKIEVGSLVTPEEYLVAWQDI---VDFHVDPFD 173 LKV G + ++ QRRR PF+ + E+G+LV+ +E+ V W+ VDF VDPFD Sbjct: 108 LKVSLGPKNPFTLNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFD 167 Query: 174 DCCRIFLTKDQLFSTRDKKNDTVILCEFKMEFRVKRDIKSVKVSMERGTIVLFIELLCPP 353 C+ +++ FS + VI C+FK+EF V RDI + E +VL ++L P Sbjct: 168 GTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLV-RDINEIIQYTETSCLVLLLQLASAP 226 Query: 354 SIYYRTADDDIHVTVPFALLDDDDPWIRTLDFTDNNAFGRCLCYRISLSPRTGHTMEQAK 533 ++YRTADDDI VPF LLDDDDPWIRT DFT + A GRC YR+S+ PR G + +A Sbjct: 227 WVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAV 286 Query: 534 RYFS--RYHLLGETVERVFDSSLRVRPEGHV-VPRGLLFFTIPNQKWIRFESQYLLNGLI 704 +Y R +L E R +R+ E +P FF I +++ I FE +L+N ++ Sbjct: 287 KYLKERRVQVLQEENHR---RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVM 343 Query: 705 HKGILNYHSLNDRFYRMLYPASTPLAQSTMALRHMHSY 818 HKGI N H L++ F+ +L T + + AL+H+ +Y Sbjct: 344 HKGIFNQHQLSNDFFDLLRNQHTEV--NVSALKHICTY 379