BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00013013
         (1343 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR17135.1| unknown [Picea sitchensis]                             410   e-112
ref|XP_006850502.1| hypothetical protein AMTR_s00035p00224680 [A...   273   9e-71
emb|CBI35920.3| unnamed protein product [Vitis vinifera]              247   9e-63
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   247   9e-63
ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603...   234   5e-59
ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267...   231   4e-58
ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypep...   226   1e-56
ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citr...   226   2e-56
ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 ...   225   3e-56
ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 ...   225   3e-56
ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616...   224   6e-56
ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221...   224   8e-56
gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Moru...   222   3e-55
ref|XP_004305732.1| PREDICTED: uncharacterized protein LOC101303...   220   9e-55
ref|XP_002339506.1| predicted protein [Populus trichocarpa] gi|5...   219   2e-54
ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 ...   219   3e-54
ref|XP_004290561.1| PREDICTED: DNA-directed RNA polymerase I sub...   218   4e-54
ref|XP_004487983.1| PREDICTED: uncharacterized protein LOC101507...   216   1e-53
ref|XP_001777438.1| predicted protein [Physcomitrella patens] gi...   216   2e-53
gb|EMJ16625.1| hypothetical protein PRUPE_ppa006096mg [Prunus pe...   214   5e-53

>gb|ABR17135.1| unknown [Picea sitchensis]
          Length = 443

 Score =  410 bits (1055), Expect = e-112
 Identities = 223/428 (52%), Positives = 290/428 (67%), Gaps = 13/428 (3%)
 Frame = +2

Query: 98   EYEKPSNPQGLGAPFVGYFPSGFDPVQEEE---KVEMVAYQNSKKHRRNQIQVVATPSDL 268
            EY KP +  G G PFVGYF SG+DP+++ +    +E+  YQN++K +  Q+++VA P + 
Sbjct: 21   EYIKPQS--GFGCPFVGYFSSGYDPLKKGDASSSLEVGVYQNTRKFKTKQMELVARPKEA 78

Query: 269  NLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXX 448
            N+DFVGTNY+GE + WQPC++L+GVFDK T TLKLVPI+G RIFRME R++G +Y     
Sbjct: 79   NVDFVGTNYSGENSLWQPCNYLMGVFDKETSTLKLVPISGGRIFRMEARVQGMEYMSAVA 138

Query: 449  XXXXXXXXXX--RKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIG 622
                        R+R  Q LT +FGTHKS+L +KR +K RL+EE + +   +G  +E+  
Sbjct: 139  EEENAEELTAENRQRQYQLLTATFGTHKSRLEAKRRDKSRLKEEALGDQSGIGKLFEEAA 198

Query: 623  QNTRALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELIN 802
            +NT  LT  EALA+ANAN VRNIPP+  +A  P+KVYLLE+II +EEW+Q+ P + ELI 
Sbjct: 199  KNTTVLTSKEALARANANIVRNIPPYDASATKPEKVYLLENIILKEEWDQQ-PNIGELIA 257

Query: 803  AGTSILLATDFQENSNYPLFVRNRIQKLKEQSTAKRDRLAHVFAYITYLMNFKNIPPRII 982
            AGT+   A +FQ  S+YPLFVR+RI KL  +S   RDRLAH+ +YIT+L+NFK +P   I
Sbjct: 258  AGTNARAAAEFQR-SDYPLFVRSRIDKLGSESGKGRDRLAHILSYITHLLNFKAMPLHAI 316

Query: 983  KKWLKA--------GDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLIS 1138
            K+ LKA         D    R ME  S K+P VT  KFLKLFT+S E+ R  EKTDLLIS
Sbjct: 317  KRLLKARTTLEHDTDDKETARLME--SSKIPGVTLAKFLKLFTDSKESTRSREKTDLLIS 374

Query: 1139 YILVLTLIADDFETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPV 1318
            YILVLTL+AD FET  SDIA DLKM   DVK +Y ELGCK RG +    + +P+P T P 
Sbjct: 375  YILVLTLMADGFETHPSDIAADLKMIVPDVKSHYQELGCKARGTQNNLKISLPIPLTFPT 434

Query: 1319 MKEVRRRR 1342
            M E  +RR
Sbjct: 435  MNEAVQRR 442


>ref|XP_006850502.1| hypothetical protein AMTR_s00035p00224680 [Amborella trichopoda]
            gi|548854148|gb|ERN12083.1| hypothetical protein
            AMTR_s00035p00224680 [Amborella trichopoda]
          Length = 451

 Score =  273 bits (699), Expect = 9e-71
 Identities = 163/419 (38%), Positives = 234/419 (55%), Gaps = 16/419 (3%)
 Frame = +2

Query: 134  APFVGYFPSGFDPVQEEE---KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE 304
            AP VGYFPSGFDP++  +   ++++ AY+    ++   +QVV +P   N+DFVGTNYTGE
Sbjct: 33   APCVGYFPSGFDPLRHNKNDGELKIKAYRAVPNYKSWCMQVVVSPEGSNVDFVGTNYTGE 92

Query: 305  AAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDY---XXXXXXXXXXXXXX 475
            AA  Q CS+ LGV DK    L +VPIAGD++FRMEPR+RG  Y                 
Sbjct: 93   AAVSQSCSYALGVLDKEKQILTVVPIAGDKVFRMEPRVRGLQYEDAVYEEPKEVENTPQI 152

Query: 476  XRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 655
             R   I+ LT +FGT ++K  S +     ++EE +   + L     ++G++T  +T  EA
Sbjct: 153  KRSDKIRNLTLNFGTRQAKHSSMKRAAAFMKEEDLGTQEGLEAYVSEVGKSTSVMTKTEA 212

Query: 656  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 835
            L +A    VRNIPP+   A TPDK YLL+ IIS  EW + S ++ EL+  G+    A  F
Sbjct: 213  LYQATKQVVRNIPPYDTEATTPDKAYLLDKIISPNEWAELSDVM-ELVEVGSCGASALKF 271

Query: 836  Q-ENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPP--RIIKKWLKAG 1003
            + +N  YP FVRNR+  +K+     ++ +LA +F+YIT+L+ F  +     +++  LKA 
Sbjct: 272  KMQNDYYPCFVRNRVGNIKKVHDIEEKKKLACIFSYITHLLEFLALQTENELLRCLLKAQ 331

Query: 1004 D------ASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIA 1165
                     E + + G   ++P +    FL  F    +     EK D++ISYILVLTL A
Sbjct: 332  SQAIYDLGEEGKKIFGAGFRIPGIVLVNFLNTFFADRKEKFTKEKNDMVISYILVLTLFA 391

Query: 1166 DDFETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            D F T  SDI +DLKM    ++  YLELGCK+   K   +V +P P   P +    RRR
Sbjct: 392  DGFTTDPSDICKDLKMKLPTLRKSYLELGCKLSTAKTGSIVTLPAPLKFPTLTTPYRRR 450


>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  247 bits (630), Expect = 9e-63
 Identities = 152/410 (37%), Positives = 238/410 (58%), Gaps = 9/410 (2%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEEKVE-----MVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTG 301
            P VGYFPSGFDP + ++        +  ++N  K R N++Q+V +P+D  ++FVGT+Y+G
Sbjct: 13   PLVGYFPSGFDPHKPQDHESDPPPAVKVFRN--KARANRLQLVVSPNDSKVNFVGTSYSG 70

Query: 302  EAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXR 481
            EAA  Q C++ LGV DK T TLK+VPIA ++IFR+EPR+ G D                 
Sbjct: 71   EAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPSSLLKGEQTAE 130

Query: 482  KR--NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 655
            ++   ++ LT  +GT KS   +K+++    +++  ++ D L  + +++      + + EA
Sbjct: 131  EKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKD-LDRKLKEV------VINKEA 183

Query: 656  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 835
            L   +A+S RNIPP+  TA TP + Y L+ II + EW+    IL +L+ AG  +      
Sbjct: 184  LESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDIL-DLLQAGVEV------ 236

Query: 836  QENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDAS 1012
             E+S Y  FV NRIQKLKE +   ++  LA +F+YI +L+ +K+           + DAS
Sbjct: 237  -ESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKD---------RNSMDAS 286

Query: 1013 EDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPT-EKTDLLISYILVLTLIADDFETSVS 1189
              ++      K+P +   KF  +F   +++ R T EK DLLISY+LVLTL AD+F T  S
Sbjct: 287  SAKH-----HKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPS 341

Query: 1190 DIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            DIA+DL+M A  ++ ++  LGCK+    K  +  +P+P T P +++ RRR
Sbjct: 342  DIARDLRMSAVKLRAHFEHLGCKLVSQNKVTMATLPVPLTFPRLRQKRRR 391


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
            vinifera]
          Length = 421

 Score =  247 bits (630), Expect = 9e-63
 Identities = 152/410 (37%), Positives = 238/410 (58%), Gaps = 9/410 (2%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEEKVE-----MVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTG 301
            P VGYFPSGFDP + ++        +  ++N  K R N++Q+V +P+D  ++FVGT+Y+G
Sbjct: 43   PLVGYFPSGFDPHKPQDHESDPPPAVKVFRN--KARANRLQLVVSPNDSKVNFVGTSYSG 100

Query: 302  EAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXR 481
            EAA  Q C++ LGV DK T TLK+VPIA ++IFR+EPR+ G D                 
Sbjct: 101  EAASAQVCTYALGVLDKETQTLKIVPIASNKIFRLEPRVGGSDASVDEPSSLLKGEQTAE 160

Query: 482  KR--NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 655
            ++   ++ LT  +GT KS   +K+++    +++  ++ D L  + +++      + + EA
Sbjct: 161  EKAGRMRDLTNLYGTKKSITQAKKLQALNQKDDPRSQKD-LDRKLKEV------VINKEA 213

Query: 656  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 835
            L   +A+S RNIPP+  TA TP + Y L+ II + EW+    IL +L+ AG  +      
Sbjct: 214  LESTSAHSARNIPPYDDTATTPQEAYRLDKIIFKGEWDYLLDIL-DLLQAGVEV------ 266

Query: 836  QENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDAS 1012
             E+S Y  FV NRIQKLKE +   ++  LA +F+YI +L+ +K+           + DAS
Sbjct: 267  -ESSAYSSFVCNRIQKLKELEDEGEKTTLACIFSYINHLLKYKD---------RNSMDAS 316

Query: 1013 EDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPT-EKTDLLISYILVLTLIADDFETSVS 1189
              ++      K+P +   KF  +F   +++ R T EK DLLISY+LVLTL AD+F T  S
Sbjct: 317  SAKH-----HKIPGILNQKFSSMFALDSDSRRLTEEKKDLLISYVLVLTLYADEFRTDPS 371

Query: 1190 DIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            DIA+DL+M A  ++ ++  LGCK+    K  +  +P+P T P +++ RRR
Sbjct: 372  DIARDLRMSAVKLRAHFEHLGCKLVSQNKVTMATLPVPLTFPRLRQKRRR 421


>ref|XP_006350715.1| PREDICTED: uncharacterized protein LOC102603859 [Solanum tuberosum]
          Length = 431

 Score =  234 bits (598), Expect = 5e-59
 Identities = 150/416 (36%), Positives = 224/416 (53%), Gaps = 8/416 (1%)
 Frame = +2

Query: 116  NPQGLGAPFVGYFPSGFDPVQEE----EKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFV 283
            NP  + +P VGYFPSG+DP+       E++    Y+N+K  R N++Q+V +P+   +DFV
Sbjct: 48   NPNNI-SPIVGYFPSGYDPLTNNNDGVEELSTKLYRNAK--RNNRLQLVVSPNGSQVDFV 104

Query: 284  GTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 463
            GTNY+GEA   Q C++ LG+ DK T TLK+VPIA ++I R+EPR+RG +           
Sbjct: 105  GTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRVRGLEAQETEDPDTAK 164

Query: 464  XXXXXRKRN--IQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRA 637
                  +RN  ++ LT  + + K+   +++++  R +E+T           E+  +N   
Sbjct: 165  QELTAEERNDKMRELTQKYSSKKTIRQARKLDSLRQQEDT--------GNQEEFDRNIAG 216

Query: 638  LTHAEALAKANA-NSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 814
              + EAL  A A +S RNIPPH   A  P   Y L+ IIS+ EW+    I  EL  AG  
Sbjct: 217  AINKEALEVAVATDSARNIPPHDLDATIPQLAYPLDRIISKGEWDFLLDIF-ELTEAGAE 275

Query: 815  ILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKW 991
              +  D      YP FV NR  KL+  Q   ++ RLA +F++IT+L+ FK+         
Sbjct: 276  --MTPDL-----YPSFVCNRSYKLEHIQDEDEKKRLAGIFSFITHLVKFKD--------- 319

Query: 992  LKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADD 1171
                  S D        K P + + KF  +F+ S     P EK  LLI+Y+LVLTL ADD
Sbjct: 320  ----KHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTLLINYVLVLTLFADD 375

Query: 1172 FETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            F +  SDIA+DL++ A  ++ +Y  LGCK+  +K   +  +P+P   P ++  RRR
Sbjct: 376  FRSDPSDIAKDLRINAVALRPFYEYLGCKLVREKNVVLATLPVPLVFPSVRRKRRR 431


>ref|XP_004240985.1| PREDICTED: uncharacterized protein LOC101267531 [Solanum
            lycopersicum]
          Length = 410

 Score =  231 bits (590), Expect = 4e-58
 Identities = 150/416 (36%), Positives = 222/416 (53%), Gaps = 8/416 (1%)
 Frame = +2

Query: 116  NPQGLGAPFVGYFPSGFDPVQEE----EKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFV 283
            NP  + +P VGYFPSG+DP++      E++    Y+N +  R N++QVV +P    +DFV
Sbjct: 27   NPNNI-SPMVGYFPSGYDPLRNTNDGVEELSTKLYRNVR--RNNRLQVVVSPYGSQVDFV 83

Query: 284  GTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 463
            GTNY+GEA   Q C++ LG+ DK T TLK+VPIA ++I R+EPR+RG +           
Sbjct: 84   GTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRVRGSEVPDAEDPDTAK 143

Query: 464  XXXXXRKRN--IQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRA 637
                  +RN  ++ LT  + + KS   +++++  R +E+T           E+  +N   
Sbjct: 144  QELTAEERNDKMRELTQMYSSKKSIRQARKLDSLRQQEDT--------GNQEEFDRNIAG 195

Query: 638  LTHAEALAKANA-NSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 814
              + EAL    A +S RNIPPH   A  P   Y L+ IIS+ EW+    I  EL  AG  
Sbjct: 196  AINKEALEVTVATDSARNIPPHDLDATIPQLAYPLDRIISKGEWDFLLDIF-ELTEAGAE 254

Query: 815  ILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKW 991
              +  D      YP FVRNR  KL+  Q   ++ RLA + ++IT+L+ FK+         
Sbjct: 255  --MTPDL-----YPSFVRNRSYKLEHIQDEDEKKRLAGILSFITHLVKFKD--------- 298

Query: 992  LKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADD 1171
                  S D        K P + + KF  +F+ S     P EK  LLI+Y+LVLTL ADD
Sbjct: 299  ----KHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTLLINYVLVLTLFADD 354

Query: 1172 FETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            F +  SDIA+DL++ A  ++ +Y  LGCK+  +K   +  +P+P   P ++  RRR
Sbjct: 355  FRSDPSDIAKDLRINAVALRPFYEYLGCKLVREKNIVLATLPVPLVFPGVRRKRRR 410


>ref|XP_002521367.1| DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus
            communis] gi|223539445|gb|EEF41035.1| DNA-directed RNA
            polymerase I 49 kDa polypeptide, putative [Ricinus
            communis]
          Length = 481

 Score =  226 bits (577), Expect = 1e-56
 Identities = 147/438 (33%), Positives = 224/438 (51%), Gaps = 36/438 (8%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEE-------------------------------KVEMVAYQNSKK 223
            P VGYFPSG+ P +  E                               K+E  + + ++K
Sbjct: 74   PIVGYFPSGYKPSKHNESNNLHDTSNEENATSSLSQPSVKFYRNAQRTKIEKSSNERNEK 133

Query: 224  HRRNQ-IQVVATPSDLNLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIF 400
             R ++ +++V +P+  N+DFVG +Y GEA   Q C++ LGV DK T TLK++PIAG++IF
Sbjct: 134  WRSSERMELVVSPNGSNVDFVGKSYKGEATAAQLCTYALGVLDKKTKTLKIMPIAGNKIF 193

Query: 401  RMEPRIRGFDYXXXXXXXXXXXXXXXRKRNI--QALTTSFGTHKSKLMSKRMEKRRLEEE 574
            R+EP+I+G D                    +  + LT ++GT KS    KRME       
Sbjct: 194  RLEPKIQGVDASDKEPSVLENEDLSKENMAVRKKTLTDTYGTKKSITQGKRME------- 246

Query: 575  TITEHDKLGDEYEDIGQN-TRALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDII 751
             I       +  +D+ Q     + +  AL   +A+  RNIPPH+ +A TP + Y L  II
Sbjct: 247  -IMMQGDNPESRKDLDQKIDNVVVNKAALEDTSAHVARNIPPHNTSATTPQEAYPLGRII 305

Query: 752  SQEEWNQESPILQELINAGTSILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHV 928
               EW+     L E++ AG    +       + YP+FVRNRI KL+E Q   +R   + +
Sbjct: 306  LTGEWDYLED-LYEILQAGEGAAI-------NAYPVFVRNRIHKLREIQDEVERKTYSRI 357

Query: 929  FAYITYLMNFKNIPPRIIKKWLKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVR 1108
            F+YIT+L+ FK++              S D      + K P++   KF+ +FT  +  + 
Sbjct: 358  FSYITHLLKFKDL-------------HSMDGVSSAKNHKFPSILRQKFMGMFTPESRKL- 403

Query: 1109 PTEKTDLLISYILVLTLIADDFETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVV 1288
            P EK DLLISY+LVL+L ADDF T  +DIA+DL++    V+ ++  LGCK+  + K  + 
Sbjct: 404  PVEKIDLLISYVLVLSLYADDFRTDPTDIAKDLRVSRVMVRTHFENLGCKIVCENKLSLA 463

Query: 1289 YIPLPFTLPVMKEVRRRR 1342
             +P+P   PV ++ R RR
Sbjct: 464  TLPVPLKFPVQRQRRARR 481


>ref|XP_006426597.1| hypothetical protein CICLE_v10025597mg [Citrus clementina]
            gi|557528587|gb|ESR39837.1| hypothetical protein
            CICLE_v10025597mg [Citrus clementina]
          Length = 447

 Score =  226 bits (576), Expect = 2e-56
 Identities = 146/410 (35%), Positives = 226/410 (55%), Gaps = 8/410 (1%)
 Frame = +2

Query: 137  PFVGYFPSGFDPV---QEEE---KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYT 298
            P VGYFPS + P     +EE   KV +    N KK+R  ++++V +P D ++D+VGT+Y+
Sbjct: 69   PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYS 128

Query: 299  GEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXX 478
            GEA   Q C + +GV D+NT TLK+VPIA ++IFR+EPR+RG D                
Sbjct: 129  GEAMAPQFCHYAVGVLDRNTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEV- 187

Query: 479  RKRNIQA-LTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 655
             + N++A L T +GT KS   SK+M     E +  ++ D L  + + +  N       EA
Sbjct: 188  -QANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKD-LALKMKSVKIN------KEA 239

Query: 656  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 835
            L    +++V N+PP+   A TP + Y L+ II + EW+    I    ++AG+ ++     
Sbjct: 240  LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNH-VSAGSEVI----- 293

Query: 836  QENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDAS 1012
              +  YP FV NRI KL+E Q   ++  LA +F+YIT+L+ FK+               S
Sbjct: 294  --SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKD-------------QHS 338

Query: 1013 EDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVSD 1192
             D        ++P +   KFL  F+++       +K  LLISY+LVLTL ADDF T+ +D
Sbjct: 339  MDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398

Query: 1193 IAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            IA+DL+M    ++ ++ +LGCK+   ++K ++Y  LP  L   K ++RRR
Sbjct: 399  IAKDLRMSEFKLRDHFEKLGCKLL--REKNMLYATLPVPLQFPKAIQRRR 446


>ref|XP_003595058.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
            gi|355484106|gb|AES65309.1| DNA-directed RNA polymerase I
            subunit rpa49 [Medicago truncatula]
          Length = 411

 Score =  225 bits (574), Expect = 3e-56
 Identities = 139/410 (33%), Positives = 221/410 (53%), Gaps = 9/410 (2%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEEKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE--AA 310
            PF+GYF SGFDPV+     ++  Y+N   H+R ++  V +P+  +++FVGT+Y GE  AA
Sbjct: 30   PFIGYFTSGFDPVKSSSGTDVQVYRNKVMHKRTEL--VVSPAGSSVEFVGTSYEGEAVAA 87

Query: 311  EWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDY------XXXXXXXXXXXXX 472
               P +++LGVFDK + TLK+VPI G++IFR+EPR++G +Y                   
Sbjct: 88   ARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPPPTPIKMVEEMTAEQL 147

Query: 473  XXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAE 652
              +KRN  A   + GT +S  M  R+   R +EE   + + L ++ +++     AL + E
Sbjct: 148  AEKKRNTDA---ALGTKRSNKMHSRLADMRGDEEPEAKKN-LDEKMKNVEVKETALANTE 203

Query: 653  ALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATD 832
                  A+  R+IPP++ +A TP + Y+L+ II  EEWN    I   L        +A D
Sbjct: 204  ------AHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIYYSLQKE-----VAAD 252

Query: 833  FQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDA 1009
            F   S YP F+RNRI +LK+ +  +++ + + + ++I YL+ FK+               
Sbjct: 253  F---SLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKD-------------QH 296

Query: 1010 SEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVS 1189
            S D       +K+P     +F  +F  +     P EK +LLISY+LVLTL +DDF T   
Sbjct: 297  SMDGISSSKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYR 356

Query: 1190 DIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            DIA+DL+M    ++  +  LGCK+   +K     +P+P T   +K+ +R+
Sbjct: 357  DIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFSQIKKRKRK 406


>ref|XP_003595057.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
            gi|217073572|gb|ACJ85146.1| unknown [Medicago truncatula]
            gi|355484105|gb|AES65308.1| DNA-directed RNA polymerase I
            subunit rpa49 [Medicago truncatula]
            gi|388522465|gb|AFK49294.1| unknown [Medicago truncatula]
          Length = 428

 Score =  225 bits (574), Expect = 3e-56
 Identities = 139/410 (33%), Positives = 221/410 (53%), Gaps = 9/410 (2%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEEKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE--AA 310
            PF+GYF SGFDPV+     ++  Y+N   H+R ++  V +P+  +++FVGT+Y GE  AA
Sbjct: 47   PFIGYFTSGFDPVKSSSGTDVQVYRNKVMHKRTEL--VVSPAGSSVEFVGTSYEGEAVAA 104

Query: 311  EWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDY------XXXXXXXXXXXXX 472
               P +++LGVFDK + TLK+VPI G++IFR+EPR++G +Y                   
Sbjct: 105  ARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPPPTPIKMVEEMTAEQL 164

Query: 473  XXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAE 652
              +KRN  A   + GT +S  M  R+   R +EE   + + L ++ +++     AL + E
Sbjct: 165  AEKKRNTDA---ALGTKRSNKMHSRLADMRGDEEPEAKKN-LDEKMKNVEVKETALANTE 220

Query: 653  ALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATD 832
                  A+  R+IPP++ +A TP + Y+L+ II  EEWN    I   L        +A D
Sbjct: 221  ------AHVTRHIPPYNSSATTPQEAYVLDKIILAEEWNYLQDIYYSLQKE-----VAAD 269

Query: 833  FQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDA 1009
            F   S YP F+RNRI +LK+ +  +++ + + + ++I YL+ FK+               
Sbjct: 270  F---SLYPSFIRNRINRLKKIEDDSEKKKHSCILSFINYLVKFKD-------------QH 313

Query: 1010 SEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVS 1189
            S D       +K+P     +F  +F  +     P EK +LLISY+LVLTL +DDF T   
Sbjct: 314  SMDGISSSKFEKLPYTLHHRFTTMFDVTESRRLPPEKMNLLISYVLVLTLFSDDFRTDYR 373

Query: 1190 DIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            DIA+DL+M    ++  +  LGCK+   +K     +P+P T   +K+ +R+
Sbjct: 374  DIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFSQIKKRKRK 423


>ref|XP_006465974.1| PREDICTED: uncharacterized protein LOC102616137 [Citrus sinensis]
          Length = 447

 Score =  224 bits (571), Expect = 6e-56
 Identities = 145/410 (35%), Positives = 226/410 (55%), Gaps = 8/410 (1%)
 Frame = +2

Query: 137  PFVGYFPSGFDPV---QEEE---KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYT 298
            P VGYFPS + P     +EE   KV +    N KK+R  ++++V +P D ++D+VGT+Y+
Sbjct: 69   PLVGYFPSIYKPDVDHPDEEMRPKVRVYRNMNEKKNRTGRMELVVSPRDSSVDYVGTSYS 128

Query: 299  GEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXX 478
            GEA   Q C + +GV D++T TLK+VPIA ++IFR+EPR+RG D                
Sbjct: 129  GEAMAPQFCHYAVGVLDRSTQTLKIVPIAANKIFRLEPRVRGSDVADKDAGKGEISAEV- 187

Query: 479  RKRNIQA-LTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 655
             + N++A L T +GT KS   SK+M     E +  ++ D L  + + +  N       EA
Sbjct: 188  -QANMKAMLDTRYGTKKSLRQSKKMHALNKENDPESQKD-LALKMKSVKIN------KEA 239

Query: 656  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 835
            L    +++V N+PP+   A TP + Y L+ II + EW+    I    ++AG+ ++     
Sbjct: 240  LESTTSDTVLNVPPYDANATTPQQAYPLDKIILKGEWDFVQDIFNH-VSAGSEVI----- 293

Query: 836  QENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDAS 1012
              +  YP FV NRI KL+E Q   ++  LA +F+YIT+L+ FK+               S
Sbjct: 294  --SDAYPSFVCNRIHKLREIQDDVEKQTLASIFSYITHLVKFKD-------------QHS 338

Query: 1013 EDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVSD 1192
             D        ++P +   KFL  F+++       +K  LLISY+LVLTL ADDF T+ +D
Sbjct: 339  MDGGASAKQHRIPKILHQKFLTSFSDAESKRLSDDKIHLLISYVLVLTLHADDFRTNPTD 398

Query: 1193 IAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            IA+DL+M    ++ ++ +LGCK+   ++K ++Y  LP  L   K ++RRR
Sbjct: 399  IAKDLRMSEFKLRDHFEKLGCKLL--REKNMLYATLPVPLQFPKAIQRRR 446


>ref|XP_004141689.1| PREDICTED: uncharacterized protein LOC101221697 [Cucumis sativus]
            gi|449480549|ref|XP_004155927.1| PREDICTED:
            uncharacterized protein LOC101224839 [Cucumis sativus]
          Length = 435

 Score =  224 bits (570), Expect = 8e-56
 Identities = 140/416 (33%), Positives = 227/416 (54%), Gaps = 7/416 (1%)
 Frame = +2

Query: 113  SNPQGLGAPFVGYFPSGFDPVQEEEKVE---MVAYQNSKKHRRNQIQVVATPSDLNLDFV 283
            SN      P VGYFPSGFDP ++ +K +   + A     K+R N++Q+V +P+  N+DFV
Sbjct: 49   SNQPQKTPPVVGYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFV 108

Query: 284  GTNYTGEA-AEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXX 460
            GTNY GEA A  Q C++ LGV DK T +LK+VPIA + IFR++P++RG D          
Sbjct: 109  GTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVA 168

Query: 461  XXXXXXRKR--NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTR 634
                  + +   ++ LT  +GT KSK  ++++   + E++  T+ D         G+   
Sbjct: 169  NEELSGQDKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDL-------DGRMKN 221

Query: 635  ALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 814
             + + EAL    A   RNIP ++ +A TP + Y L+ II + EW+     L++L      
Sbjct: 222  VVVNKEALEGTQAEVARNIPAYNASATTPQEAYPLDKIILKGEWS----FLEDLY----- 272

Query: 815  ILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKW 991
              L    + ++ YP FVRNRI KL++ Q   ++ +L  +F+YIT+L+ +K+         
Sbjct: 273  FRLQETAEISATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQH------- 325

Query: 992  LKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADD 1171
               GD S  +       K+P++   KF  +F  +       +K +LLIS++LVL+L AD+
Sbjct: 326  -SMGDVSSAK-----GHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLSLFADE 379

Query: 1172 FETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            F +  +DIA+DL+   +D++L++  LGCK        +  +P+P   P +++ RRR
Sbjct: 380  FSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPIPLQFPELRQKRRR 435


>gb|EXB29690.1| DNA-directed RNA polymerase I subunit rpa49 [Morus notabilis]
          Length = 438

 Score =  222 bits (565), Expect = 3e-55
 Identities = 138/411 (33%), Positives = 228/411 (55%), Gaps = 9/411 (2%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEEKVEMVA----YQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGE 304
            P VGYFPSGFDP   +++    A    ++N  K +R  +Q+V +P+  N+DFVGTNY+GE
Sbjct: 59   PLVGYFPSGFDPKDGDDESSATAMARVFRNRNKPKR--LQLVVSPNGANVDFVGTNYSGE 116

Query: 305  A-AEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXX- 478
            A A  Q C++ LGV DK T TLK+VPIA ++IFR+EP++RG                   
Sbjct: 117  AEAGQQHCNYALGVLDKETQTLKIVPIASNKIFRLEPKVRGLRLPNKDSGSLAEGERSAL 176

Query: 479  -RKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEA 655
             +   I+ LT  +GT+KS   +K+ +     ++  T+ D + ++ + I      +   +A
Sbjct: 177  SKSEKIKGLTDRYGTNKSIREAKKRDALYQNDDPETQKD-MDEKIKQI------VIKKDA 229

Query: 656  LAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDF 835
            L     ++ RNIPP++  A +  + Y +E II + EW+     L+++       LL  + 
Sbjct: 230  LESTQVHTDRNIPPYNAAATSSQEAYPIEKIILKGEWD----FLEDIYR-----LLQEEA 280

Query: 836  Q-ENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDA 1009
            + ++ +YP F+ NRIQ L+E +   ++ R A +F+YIT+L+ FK++              
Sbjct: 281  ELKSDDYPSFISNRIQNLRETEDEEEKKRRACIFSYITHLIKFKDLH------------- 327

Query: 1010 SEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVS 1189
            S D        K P++   KF  +F  S      +++ DLLISY+LVLTL AD F+T+++
Sbjct: 328  SMDGVSSAKRHKFPSILRQKFSAMFLSSEVKKLASKENDLLISYVLVLTLYADRFQTNLT 387

Query: 1190 DIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            DIA+DL+M +  ++++Y +LGCK+          +P+P   P +++ RR+R
Sbjct: 388  DIAKDLRMTSVTLRVHYEQLGCKLVRQNNLWFATLPVPLQFPDLRQRRRKR 438


>ref|XP_004305732.1| PREDICTED: uncharacterized protein LOC101303149 [Fragaria vesca
            subsp. vesca]
          Length = 425

 Score =  220 bits (561), Expect = 9e-55
 Identities = 143/418 (34%), Positives = 220/418 (52%), Gaps = 7/418 (1%)
 Frame = +2

Query: 110  PSNPQGLGAPFVGYFPSGFDPVQEEEKVEM-VAYQNSKKHRRNQIQVVATPS-DLNLDFV 283
            P NP+ +  P VGYFPSGFDP Q  +     V     K+    ++QVV TP+ +  +DFV
Sbjct: 41   PGNPERI-PPLVGYFPSGFDPTQNPDPDSTKVGVFRHKERGGTRLQVVVTPNKEPKVDFV 99

Query: 284  GTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 463
            GT+Y GEA   + CS+ LG+ DK T TLK+VPIA ++IFR+E +I+G D           
Sbjct: 100  GTSYAGEAQAGELCSYGLGILDKATQTLKIVPIASNKIFRLEAKIQGLDSAGKEPAGSGI 159

Query: 464  XXXXX----RKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNT 631
                     ++RN   L   +GT KS   +K+M+  + E++         D   D+    
Sbjct: 160  GELSTLEKAKRRN--ELHNLYGTKKSIRQNKKMQTLKQEDDP--------DSQNDLDAIK 209

Query: 632  RALTHAEALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGT 811
            + +   E    +  +  RN PP + +A TP + Y L+ II+ EEW     I + L   G 
Sbjct: 210  QGMIDREDTEASEGHKDRNTPPFNASATTPHEAYPLDKIITTEEWKFLQDIYK-LSEGGA 268

Query: 812  SILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKK 988
             I          ++P FV NR+ KL+  +   KR++L+ +F+YIT+L+ FK++       
Sbjct: 269  EI-------SQVSFPAFVCNRVHKLQLIEDEDKRNKLSCIFSYITHLVKFKDLH------ 315

Query: 989  WLKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIAD 1168
                   S D +      + P++  DKF  +F   ++ +  TEK +LLISY+LVLTL AD
Sbjct: 316  -------SMDGFSSAKGHRFPSMIKDKFSTMFDAVSKRLS-TEKNNLLISYVLVLTLFAD 367

Query: 1169 DFETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            +F+TS++DIA+DL+M    ++ +Y  LGCK+        V +P+P   P ++  RR R
Sbjct: 368  EFQTSMTDIAKDLRMSNATLRTHYETLGCKVSKKNDVSTVTLPVPLQFPTVRRKRRNR 425


>ref|XP_002339506.1| predicted protein [Populus trichocarpa]
            gi|566150007|ref|XP_006369274.1| hypothetical protein
            POPTR_0001s20580g [Populus trichocarpa]
            gi|550347732|gb|ERP65843.1| hypothetical protein
            POPTR_0001s20580g [Populus trichocarpa]
          Length = 472

 Score =  219 bits (559), Expect = 2e-54
 Identities = 145/446 (32%), Positives = 231/446 (51%), Gaps = 30/446 (6%)
 Frame = +2

Query: 95   IEYEKPSNPQGLGAPFVGYFPSGFDPVQEEE--------------------------KVE 196
            ++ E  +N      P VGYFPSG++P +  +                          KVE
Sbjct: 56   VKLELVNNQVDKTPPVVGYFPSGYNPHKTNDINDAQEPILPLAAPPSVKLYRNAQRAKVE 115

Query: 197  MVAYQNSKKHRRNQ-IQVVATPSDLNLDFVGTNYTGEAAEWQPCSHLLGVFDKNTHTLKL 373
              + + ++K R ++ +++V +P+  N++FVG +Y GEA   Q C++ LGV DK T TLK+
Sbjct: 116  KSSGEKNEKGRTSERLELVVSPNGSNVEFVGNSYKGEAMAAQLCTYALGVLDKATQTLKI 175

Query: 374  VPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXRKR--NIQALTTSFGTHKSKLMSKR 547
            +PIAG++I R+EP++RG                   +R   I+ L   +G  KS +  K+
Sbjct: 176  MPIAGNKILRLEPKLRGSLAADKEHANFENGEITAEQRAARIRQLNVQYGPKKSIIQDKK 235

Query: 548  MEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEALAKANANSVRNIPPHHPTAETPDK 727
            M+  R  ++ +++ D LG + E+      A  + +AL   + +S RNIPP++ +A TP +
Sbjct: 236  MQALRKGDDPLSQKD-LGRKIEN------APINKDALESTSGHSARNIPPYNSSAITPQE 288

Query: 728  VYLLEDIISQEEWNQESPILQELINAGTSILLATDFQENSNYPLFVRNRIQKLKE-QSTA 904
             Y L+ II   EW+    I  +++  G  +        ++ YP FV NRIQKL+E Q   
Sbjct: 289  AYPLDGIILTGEWDFLEDI-YKILQVGGEV-------ASNAYPTFVCNRIQKLREIQDEV 340

Query: 905  KRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDASEDRYMEGNSQKVPAVTTDKFLKLF 1084
            ++ RL+ +F+YIT+L+ FK+               S D      + + P++   KF ++F
Sbjct: 341  EKKRLSCIFSYITHLLKFKD-------------QHSMDGAASARNHQFPSIIRQKFFEMF 387

Query: 1085 TESTENVRPTEKTDLLISYILVLTLIADDFETSVSDIAQDLKMPAHDVKLYYLELGCKMR 1264
               T  +   +K DLLISY+LVLTL ADDF T  +D++ DL+M    VK +Y  LGCKM 
Sbjct: 388  KPETRRL-SVDKIDLLISYVLVLTLYADDFRTFPADVSNDLRMNPATVKSHYRNLGCKME 446

Query: 1265 GDKKKQVVYIPLPFTLPVMKEVRRRR 1342
             +K K +V + +P   P  K   R R
Sbjct: 447  REKNKYLVTLSVPLEFPQPKRKFRNR 472


>ref|XP_003625839.1| DNA-directed RNA polymerase I subunit rpa49 [Medicago truncatula]
            gi|355500854|gb|AES82057.1| DNA-directed RNA polymerase I
            subunit rpa49 [Medicago truncatula]
          Length = 412

 Score =  219 bits (557), Expect = 3e-54
 Identities = 138/418 (33%), Positives = 221/418 (52%), Gaps = 9/418 (2%)
 Frame = +2

Query: 113  SNPQGLGAPFVGYFPSGFDPVQEEE-KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGT 289
            SNP  +  PFVGYF SGFDPV+      ++  Y+N   H+R ++  V +P+   ++FVGT
Sbjct: 23   SNPTKM-PPFVGYFTSGFDPVKSSSGSTDVQVYRNKVMHKRTEL--VVSPAGSLVEFVGT 79

Query: 290  NYTGEAAEW--QPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXX 463
            +Y GEAA     P +++LGVFDK + TLK+VPI G++IFR+EPR++G +Y          
Sbjct: 80   SYEGEAAAVARNPATYMLGVFDKESQTLKIVPIGGNKIFRLEPRVKGVEYKEPTPTPT-- 137

Query: 464  XXXXXRKRNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNT-RAL 640
                   + ++ LT    T K +     +  ++ ++  I   +   DE  +  +N    +
Sbjct: 138  -------KMVEELTAEQWTEKKRKADAALGTKKSKQMLIWLDEMTADEEPEAKKNLDEKM 190

Query: 641  THAE----ALAKANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAG 808
             + E    ALA   A+  R+IPP++ +A TP + Y+L+ II  +EWN    I   L    
Sbjct: 191  KNVEVKETALANTEAHVTRHIPPYNSSATTPQEAYVLDKIILADEWNYLQDIYYSLQKEE 250

Query: 809  TSILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIK 985
                 A +F   S YP F+RNRI +LK+ +  +++ +L+ +  +I YL+ FK+       
Sbjct: 251  -----AANF---SLYPSFIRNRINRLKKIEDDSEKKKLSCILLFINYLVKFKD------- 295

Query: 986  KWLKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIA 1165
                    S D       +K+P     +F  +F  S     P EK +LLISY+LVLTL +
Sbjct: 296  ------QHSMDGISSSKFEKLPYTLHHRFTAMFDVSESRRLPPEKLNLLISYVLVLTLFS 349

Query: 1166 DDFETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRR 1339
            DDF T   DIA+DL+M    ++  +  LGCK+   +K     +P+P T P +++ +++
Sbjct: 350  DDFRTDYRDIAKDLRMTTLTLRPIFEHLGCKLISSQKVSYATLPIPLTFPQIRQRKKK 407


>ref|XP_004290561.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Fragaria
            vesca subsp. vesca]
          Length = 402

 Score =  218 bits (556), Expect = 4e-54
 Identities = 141/417 (33%), Positives = 223/417 (53%), Gaps = 8/417 (1%)
 Frame = +2

Query: 116  NPQGLGAPFVGYFPSGFDPVQEEEKVEMVAYQNSKKHRRNQIQVVATP-SDLNLDFVGTN 292
            NP+ + AP VGYFPSGFDP      V +  +   K+    ++Q+V TP ++  +DFV T+
Sbjct: 19   NPERM-APLVGYFPSGFDPDPNSTNVGVFRH---KQRGGTRLQLVVTPENEAKVDFVATS 74

Query: 293  YTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXX 472
            Y GEA   + CS+ LG+FDK T TLK+VPIA +++FR+EP+++G D              
Sbjct: 75   YAGEAQAGEYCSYGLGIFDKATRTLKIVPIANNKVFRLEPKVQGIDSSNENEKPASSVIG 134

Query: 473  XXRK-----RNIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRA 637
               +     + IQ L   +GT KS   +K+M+  + E +         D + D+    + 
Sbjct: 135  ELSEHEKAEKRIQ-LHNLYGTKKSIRKNKKMQMLKRENDP--------DAHNDLDVIKQC 185

Query: 638  LTHAEALAKAN-ANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTS 814
            +T  E L +A+  + VRN PP + +A TP + Y L+ IIS  EW     I + L      
Sbjct: 186  MTTTEDLLEASEGHMVRNTPPFNASATTPQEAYPLDKIISTGEWKFLQDIHKPL------ 239

Query: 815  ILLATDFQENSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKW 991
                   +  S  P FVRNRI KL++ +   K+++L  +F+YI +L+ F ++  +     
Sbjct: 240  -------KGESELPQFVRNRIHKLQQIEDEDKKNKLTCIFSYIMHLIKFNDLHSK----- 287

Query: 992  LKAGDASEDRYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADD 1171
             +    S ++     + + P +  DKF  +F   + ++  TEK +LLISY+LVLTL AD+
Sbjct: 288  -ERQGISSEKASSAKAHRFPGIIRDKFASMFDAESGSLS-TEKRNLLISYVLVLTLFADE 345

Query: 1172 FETSVSDIAQDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            F+ S++DIA DL+M + D++ +Y  LGCK+        V +P+P   P +K  R  R
Sbjct: 346  FQISLTDIATDLRMKSPDLRKHYEALGCKVSKKNNLLTVTLPVPLQFPSLKRKRSNR 402


>ref|XP_004487983.1| PREDICTED: uncharacterized protein LOC101507754 [Cicer arietinum]
          Length = 418

 Score =  216 bits (551), Expect = 1e-53
 Identities = 134/407 (32%), Positives = 215/407 (52%), Gaps = 5/407 (1%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQEEE-KVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGEAAE 313
            P++GYFPSGFDPV+          Y+N  K+   ++++V +P+  ++DFVGTNY GEA  
Sbjct: 42   PYIGYFPSGFDPVKSTSVSAGFQVYRN--KNMTKRLELVVSPAGSSVDFVGTNYMGEATG 99

Query: 314  WQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXRKRNI 493
                 + LGVFDK + TLK+VPI  ++IFR++P+++G +Y                ++  
Sbjct: 100  SHRSMYALGVFDKESQTLKVVPIGANKIFRLDPKVKGVEYNLYKESANGTVEELSPEQTA 159

Query: 494  ---QALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEALAK 664
               +  T   GT +    + ++   R ++E  ++ + L ++ +++  N  AL + EA   
Sbjct: 160  AKRRHSTAVLGTKRHIESTNKILDMRKDDEPESKKN-LVEKMKNVVVNEAALANTEATVS 218

Query: 665  ANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDFQEN 844
                  RNIPP+  +A TP + Y+L+ II + EW+    I          IL   +    
Sbjct: 219  ------RNIPPYDTSATTPQEAYVLDRIILEREWSYLEDIYY--------ILEQGEAANF 264

Query: 845  SNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDASEDR 1021
            S YP+F+RNRI +LK+ +  +++ +   + +YI +L+ FK+               S D 
Sbjct: 265  SAYPIFIRNRIGRLKKIEDESEKKKQFCILSYINHLIKFKD-------------QHSMDG 311

Query: 1022 YMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVSDIAQ 1201
                 S K+P +   KFL +F  S     PTEK +LLISY+LVLTL  D F+T   DIA+
Sbjct: 312  VSSAKSHKIPTILRSKFLTMFDVSESKRLPTEKINLLISYVLVLTLFIDGFQTDYKDIAK 371

Query: 1202 DLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            DL+M    ++L Y  LG K+    KK    +P+P T P +K+ +R+R
Sbjct: 372  DLRMSLIPLRLLYEHLGGKIVFQDKKSYAILPIPLTFPELKQKKRKR 418


>ref|XP_001777438.1| predicted protein [Physcomitrella patens] gi|162671169|gb|EDQ57725.1|
            predicted protein [Physcomitrella patens]
          Length = 524

 Score =  216 bits (550), Expect = 2e-53
 Identities = 138/426 (32%), Positives = 210/426 (49%), Gaps = 47/426 (11%)
 Frame = +2

Query: 122  QGLGAPFVGYFPSGFDPVQEEEKVEMVA-------YQNSKKHRRNQIQVVATPSDLNLDF 280
            +G   PFV YFP+GFDP+ E +  +  A       YQ   K +  Q Q+VA+     +DF
Sbjct: 64   EGRARPFVAYFPTGFDPLGEADHGDAAAALSSVKVYQGVDKLKAKQTQLVASTHG-QVDF 122

Query: 281  VGTNYTGEAAEWQPCSHLLGVFDKNTHTLKLVPIAGDR---------------------- 394
            VG NY GEAA WQPCS+ LGV+DK   TL+LVP+AG++                      
Sbjct: 123  VGLNYAGEAAAWQPCSYALGVYDKEKGTLQLVPLAGEKGIVDVVRKVRFGLVSGFMVYVG 182

Query: 395  --------IFRMEPRIRGFDYXXXXXXXXXXXXXXXRKRNIQALTTSFGTHKSKLMSKRM 550
                    I RMEPR+RG  Y                    + L  +FG+ KSK+ ++RM
Sbjct: 183  GSKTIGFDILRMEPRVRGMSYEWTDEEERVEDTREQSLLKRRMLVETFGSQKSKMRAQRM 242

Query: 551  EKRRLEEETITEHDKLGDEYEDIGQNTRALTHAEALAKANANSVRNIPPHHPTAETPDKV 730
            E+  ++E+ + + + +   +++ G+N   LT+ +AL +AN + VRN+PPH  +A TP+  
Sbjct: 243  ERGIVKEDALGDTEDMESLFQEAGENEALLTNEQALQQANLSVVRNVPPHDVSANTPEGA 302

Query: 731  YLLEDIISQEEWNQESPILQELINAGTSILLATDFQENSNYPLFVRNRIQKLK-EQSTAK 907
            Y L+ +I  EEW  E+   +EL  A        +      YP FV +R+++++ E     
Sbjct: 303  YPLDKLIPAEEW--ENLDTRELKTAAKK-AKDEELLRQQKYPNFVLSRLRRIRVEGDKEG 359

Query: 908  RDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDASEDRYMEGNSQKVPAVTTDKFLKLFT 1087
             DR A +  Y+ +L  F   P   ++K      A+ D         +P +    FL+ F 
Sbjct: 360  NDRRAKILVYLRHLFTFHATPHYAVRK------AASDPGRFSQETGIPGIIVSSFLERFA 413

Query: 1088 -ESTEN--------VRPTEKTDLLISYILVLTLIADDFETSVSDIAQDLKMPAHDVKLYY 1240
             EST +        ++  +  DLL SY L+L L  DDF+    D+A +LK   + ++ YY
Sbjct: 414  GESTTDSLNKSEIRIQSKQHKDLLTSYCLILGLAVDDFQADPYDMALELKQTVNTIRPYY 473

Query: 1241 LELGCK 1258
             ELGCK
Sbjct: 474  RELGCK 479


>gb|EMJ16625.1| hypothetical protein PRUPE_ppa006096mg [Prunus persica]
          Length = 427

 Score =  214 bits (546), Expect = 5e-53
 Identities = 136/408 (33%), Positives = 219/408 (53%), Gaps = 6/408 (1%)
 Frame = +2

Query: 137  PFVGYFPSGFDPVQE--EEKVEMVAYQNSKKHRRNQIQVVATPSDLNLDFVGTNYTGEAA 310
            P VGYFP  FDP +       ++  +++SKK RR  +Q+V TP+  N+DFVGTNYTGEA 
Sbjct: 50   PLVGYFPCSFDPTKSPYSNSTDVGLFRDSKKPRR--LQIVVTPNGTNVDFVGTNYTGEAT 107

Query: 311  EWQPCSHLLGVFDKNTHTLKLVPIAGDRIFRMEPRIRGFDYXXXXXXXXXXXXXXXRKR- 487
              Q C+  LGV DK T TLK++P+A ++IFR++P +RG++Y                ++ 
Sbjct: 108  TGQSCNFALGVLDKATQTLKILPVASNKIFRLQPMVRGYNYSAKEPESSVKEQLTGEEKA 167

Query: 488  -NIQALTTSFGTHKSKLMSKRMEKRRLEEETITEHDKLGDEYEDIGQNTRALT-HAEALA 661
                 L + +GT K+   SK++  R L++E   E  K      D+    + +  + EAL 
Sbjct: 168  EKQMELQSRYGTKKAIRESKKL--RSLKQEDGPESQK------DLDAKIKLIVPNKEALE 219

Query: 662  KANANSVRNIPPHHPTAETPDKVYLLEDIISQEEWNQESPILQELINAGTSILLATDFQE 841
               +   R+IPP + +A TP + Y L+ II   EW+    I  E    G  +        
Sbjct: 220  STESQISRHIPPFNESATTPQEAYSLDKIILTGEWDLLGDI-YEHFQGGAEV-------S 271

Query: 842  NSNYPLFVRNRIQKLKE-QSTAKRDRLAHVFAYITYLMNFKNIPPRIIKKWLKAGDASED 1018
               +P FV +RI KL++ +   ++ +L+ +F+YIT+L+ FK+               S D
Sbjct: 272  WDAFPRFVCHRIHKLQDIEVDEEKFKLSCIFSYITHLIKFKD-------------QHSMD 318

Query: 1019 RYMEGNSQKVPAVTTDKFLKLFTESTENVRPTEKTDLLISYILVLTLIADDFETSVSDIA 1198
                  + ++P +   KF  +F   ++ +   EKT+LLISY+LVLTL  D+FET ++DIA
Sbjct: 319  GISSSRTHRIPNLLFHKFSTMFPTESKGL-SNEKTNLLISYVLVLTLFVDEFETDLTDIA 377

Query: 1199 QDLKMPAHDVKLYYLELGCKMRGDKKKQVVYIPLPFTLPVMKEVRRRR 1342
            +DL+M A  ++ +Y  LGCK+   +      +P+P   P +++ R++R
Sbjct: 378  KDLRMSAIALRKHYENLGCKLVRKRNVMFATLPVPLQFPQLRQRRQKR 425