BLASTX nr result
ID: Ephedra27_contig00012920
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00012920
(538 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 313 2e-83
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 295 5e-78
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 295 5e-78
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 295 5e-78
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 295 5e-78
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 295 5e-78
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 295 5e-78
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 294 1e-77
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 293 2e-77
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 243 3e-62
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 212 4e-53
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 136 3e-30
ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus viru... 136 3e-30
gb|AHB59866.1| replicase [Narcissus mosaic virus] 136 4e-30
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2... 135 6e-30
gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Z... 133 3e-29
ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548... 132 4e-29
ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus ... 132 5e-29
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 132 7e-29
ref|NP_077079.1| replicase [Clover yellow mosaic virus] 132 7e-29
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 313 bits (801), Expect = 2e-83
Identities = 150/178 (84%), Positives = 161/178 (90%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIAD 534
ITLEFPVR VNTRLRGPPGF +PFT+P PVNP+DA+T +FREF S T+ +
Sbjct: 399 ITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTE 456
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 295 bits (755), Expect = 5e-78
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADS 537
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T T S
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATLAQQS 457
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 295 bits (755), Expect = 5e-78
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADS 537
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T T S
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATLAQQS 457
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 295 bits (755), Expect = 5e-78
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADS 537
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T T S
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATLAQQS 457
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 295 bits (755), Expect = 5e-78
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADS 537
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T T S
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATLAQQS 457
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 295 bits (755), Expect = 5e-78
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADS 537
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T T S
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEXTLAQQS 457
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 295 bits (755), Expect = 5e-78
Identities = 142/179 (79%), Positives = 155/179 (86%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTPTTIADS 537
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T T S
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATATVEATLAQQS 457
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 294 bits (752), Expect = 1e-77
Identities = 140/168 (83%), Positives = 152/168 (90%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 IFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPL S ++L FFRGRPSFVKLI+ALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTA 504
ITLEFPVR VNT LRGPPGF +PFT+P PVNP+DA+T +F+ F A
Sbjct: 399 ITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPDDAETTHSFQAFCQAA 446
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 293 bits (750), Expect = 2e-77
Identities = 139/171 (81%), Positives = 154/171 (90%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL
Sbjct: 279 VFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 338
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQP
Sbjct: 339 VNYFEFTASLDSHTCFEDILSGNLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQP 398
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETS 513
ITLEFPVR VNT LRG PGF +PF +P PVNP+DA+T ++F+ F T+
Sbjct: 399 ITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPDDAETTQSFQAFCQATITA 449
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 243 bits (619), Expect = 3e-62
Identities = 125/173 (72%), Positives = 135/173 (78%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLPE YNCRTPISKT MMQMFFYIKS KEA+ + +QLISTKELQHYQPSEITLL
Sbjct: 278 IFLPENYNCRTPISKTTMMQMFFYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLL 337
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYFEFTA+LDSHTCFEDV L + I R+LQFFRGRPSFVKLIKALDWQP
Sbjct: 338 VNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQP 396
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRAFREFSYTAETSTP 519
ITLEFPVR V T +RGPPGF NPFT+P PVNPEDAD F++FS A STP
Sbjct: 397 ITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPEDADISSRFQDFS-RATNSTP 448
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 212 bits (540), Expect = 4e-53
Identities = 103/160 (64%), Positives = 122/160 (76%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP N RTPI+KT+ MQ+FFYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLL
Sbjct: 278 IFLPSSANARTPITKTLAMQIFFYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLL 337
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYF+F A+LDS TC ED+LSG+L+ RLLRP R + Q +++FF+G P KLIKAL WQP
Sbjct: 338 VNYFDFVANLDSATCHEDILSGSLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQP 397
Query: 361 ITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPEDADTMRA 480
+ LEF V TV R PPGF +P +P PVN DA T A
Sbjct: 398 VLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEVDALTTAA 437
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 136 bits (343), Expect = 3e-30
Identities = 66/131 (50%), Positives = 88/131 (67%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP+K+N R PI KT++MQ+F Y+K V + ERDI+AK RQLI T +LQ + SE+ +
Sbjct: 277 IFLPKKFNTRVPIEKTLVMQIFTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHI 336
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYF F A DS TCF D+LSG+L ++L +PL + + F G P F KL+KAL WQ
Sbjct: 337 VNYFCFIAKQDSMTCFSDILSGSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQD 396
Query: 361 ITLEFPVRTVN 393
IT+ V +N
Sbjct: 397 ITMVVTVADIN 407
>ref|YP_001715612.1| RNA dependent RNA polymerase [Asparagus virus 3]
gi|169219513|dbj|BAG12158.1| RNA dependent RNA
polymerase [Asparagus virus 3]
Length = 1614
Score = 136 bits (343), Expect = 3e-30
Identities = 69/133 (51%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IF PE N P++KT MQM Y KSVK+ ERDI+AKFRQ+IST+EL+ Y+P EI L
Sbjct: 283 IFCPESMNANRPLTKTKAMQMLMYCKSVKQVSERDIYAKFRQIISTQELELYEPDEIVHL 342
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
NYF F A LDS TC+ED+L +L +RL P+R+ I + L FFRG+ SF KL+ AL W+
Sbjct: 343 CNYFNFVAHLDSITCYEDLLGNSLWRRLTIPIRTTITKALDFFRGQQSFSKLLGALKWES 402
Query: 361 IT-----LEFPVR 384
+ ++F VR
Sbjct: 403 FSYSLEPIDFTVR 415
>gb|AHB59866.1| replicase [Narcissus mosaic virus]
Length = 1630
Score = 136 bits (342), Expect = 4e-30
Identities = 68/140 (48%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IF P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P EI L
Sbjct: 283 IFFPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEIVHL 342
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
NYF F ++LDS TC+ED+LS N+ RL RPLR+ +++ ++FF+G+ F KL+ AL WQP
Sbjct: 343 ANYFSFVSNLDSITCYEDLLSSNIWTRLTRPLRTAVRKFVEFFKGKQDFDKLLIALKWQP 402
Query: 361 IT-----LEFPVRTVNTRLR 405
+ ++F V+ R+R
Sbjct: 403 FSYSLEPVDFTAYFVSRRVR 422
>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
RecName: Full=RNA replication protein; AltName: Full=176
kDa protein; AltName: Full=ORF1 protein; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
protein product [Papaya mosaic virus]
gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
virus]
Length = 1547
Score = 135 bits (340), Expect = 6e-30
Identities = 67/135 (49%), Positives = 91/135 (67%), Gaps = 2/135 (1%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP+++N R PI KT Q+F Y+KSVK ERDIWAK RQL+ T ELQ Y P E+TLL
Sbjct: 285 IFLPKQFNARLPIKKTTAQQLFLYVKSVKNVTERDIWAKMRQLLKTSELQDYNPREVTLL 344
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRS--DIQRVLQFFRGRPSFVKLIKALDW 354
VNYF A L S TCF++VLSG + ++L +P + +IQ+ F G F +L++AL+W
Sbjct: 345 VNYFLLIARLRSETCFDNVLSGGMFKKLFKPFIAWWEIQKHKIF--GNEEFEQLMEALEW 402
Query: 355 QPITLEFPVRTVNTR 399
+TL +P +T + R
Sbjct: 403 VDVTLTYPTKTFDNR 417
>gb|AAP51012.1| 186K protein [Narcissus mosaic virus strain New Zealand]
Length = 1643
Score = 133 bits (334), Expect = 3e-29
Identities = 66/140 (47%), Positives = 92/140 (65%), Gaps = 5/140 (3%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
+F P N P+SKT MQM Y KSVK+ ERDI+AK RQ+I T EL+ Y P EI L
Sbjct: 283 VFCPAAMNANRPLSKTKAMQMLLYCKSVKQVTERDIYAKIRQIIPTSELELYDPDEIVHL 342
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
NYF F ++LDS TC+ED+LS ++ RL RPLR+ +++ ++FF+G+ F KL+ AL WQP
Sbjct: 343 ANYFFFVSNLDSTTCYEDLLSSDIWMRLTRPLRTAVRKFVEFFKGKQDFDKLLIALKWQP 402
Query: 361 IT-----LEFPVRTVNTRLR 405
+ ++F V+ R+R
Sbjct: 403 FSYSLEPVDFTAYFVSRRVR 422
>ref|YP_004849314.1| replicase [Tamus red mosaic virus] gi|345548097|gb|AEO12140.1|
replicase [Tamus red mosaic virus]
Length = 1501
Score = 132 bits (333), Expect = 4e-29
Identities = 62/140 (44%), Positives = 88/140 (62%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLPEK+N R PI KT++MQMF Y+K VK+ ERDIWAK+RQLI T++LQ + E+ L
Sbjct: 284 IFLPEKFNARQPIRKTLVMQMFLYVKGVKQVSERDIWAKWRQLIKTEDLQDFSAIELLHL 343
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
NYF F S CF+DVL G + R +P+++ + V Q G FV+L++AL+W
Sbjct: 344 TNYFVFVGKQSSINCFDDVLKGGFLTRWFKPIKNWFEMVRQKIFGEAEFVRLVRALEWTE 403
Query: 361 ITLEFPVRTVNTRLRGPPGF 420
+ L+ + + + R GF
Sbjct: 404 VDLKLDTKNYDFKRREGNGF 423
>ref|YP_001960940.1| RNA-dependent RNA polymerase [Lettuce virus X]
gi|189458580|emb|CAN88808.1| RNA-dependent RNA
polymerase [Lettuce virus X]
Length = 1708
Score = 132 bits (332), Expect = 5e-29
Identities = 63/134 (47%), Positives = 88/134 (65%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IF P N PI+KT MQM+ Y+K+VK ERDI+AK Q++ T EL+ Y+P E+ L
Sbjct: 283 IFHPASSNANRPITKTKAMQMWLYVKAVKAVTERDIYAKIHQVLPTNELELYEPDELVHL 342
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
NYF F ++L S+TC+ED+LSG LI+RL RP+R+ + R ++FF GR F KL+ AL W+P
Sbjct: 343 ANYFFFLSNLKSYTCYEDLLSGGLIKRLTRPVRTAVTRFIEFFAGRNDFNKLMDALKWEP 402
Query: 361 ITLEFPVRTVNTRL 402
T T++
Sbjct: 403 FTYTLEPAVYKTKV 416
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 132 bits (331), Expect = 7e-29
Identities = 63/130 (48%), Positives = 86/130 (66%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
+FLP+K+N R P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL
Sbjct: 291 VFLPKKFNSRQPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLL 350
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
NYF + L S E+VL+G+L ++L RP++S + + G+P F +L++AL W
Sbjct: 351 ANYFMLISELSSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTN 410
Query: 361 ITLEFPVRTV 390
+ L PVR V
Sbjct: 411 VDLILPVRYV 420
>ref|NP_077079.1| replicase [Clover yellow mosaic virus]
Length = 1670
Score = 132 bits (331), Expect = 7e-29
Identities = 68/150 (45%), Positives = 96/150 (64%), Gaps = 3/150 (2%)
Frame = +1
Query: 1 IFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLL 180
IFLP ++N R PI KT++MQ+F Y+K+V AKERDIWAK RQLI T++LQ Y P+EI L
Sbjct: 285 IFLPAQFNHRVPIKKTLVMQLFMYVKTVSAAKERDIWAKIRQLIKTEDLQEYSPTEIVHL 344
Query: 181 VNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQP 360
VNYF F A + T F+ +L G++I+++ RP+ + + Q G F +L++AL W
Sbjct: 345 VNYFLFIAKTSAVTSFDSMLDGSIIKKIFRPVLAWFKSGYQRIFGLSEFNQLLEALSWDE 404
Query: 361 ITLE---FPVRTVNTRLRGPPGFHNPFTKP 441
I L PV+T + R G ++PFT P
Sbjct: 405 IDLTLDVLPVKTHDWRRMGVADSNDPFTYP 434