BLASTX nr result
ID: Ephedra27_contig00012761
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00012761
(2914 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus... 842 0.0
gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus... 842 0.0
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V... 842 0.0
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 837 0.0
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro... 835 0.0
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 833 0.0
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 833 0.0
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu... 830 0.0
gb|AAT38699.2| RNA dependent RNA polymerase family protein [Sola... 830 0.0
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 830 0.0
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 830 0.0
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 830 0.0
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola... 830 0.0
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 827 0.0
ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 827 0.0
gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum de... 826 0.0
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 825 0.0
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 823 0.0
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 822 0.0
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 818 0.0
>gb|ESW25208.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
gi|561026569|gb|ESW25209.1| hypothetical protein
PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1122
Score = 842 bits (2175), Expect = 0.0
Identities = 433/852 (50%), Positives = 590/852 (69%), Gaps = 8/852 (0%)
Frame = -2
Query: 2907 NLAILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKL 2728
NL + P+G ++P+ ++FK+N+L+Q + P L+ F+ + +R + ++ A KL
Sbjct: 273 NLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENALEKL 332
Query: 2727 ECNAENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEI 2548
+ E ++P WL + S + + L GL Y+ +V +TP ++YFC PE+
Sbjct: 333 YYSKE-FCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCGPEV 391
Query: 2547 QVSNRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQE 2368
VSNRVLRHF EH++NF+RVSFVDE + S+DLS +K+TE+Y+RILD+L+
Sbjct: 392 NVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLS-----SRAQKKTEVYKRILDILKN 446
Query: 2367 GIVIGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMG 2191
GI+IG+KKFEFLA+SSSQLRE+SLWMFA TG SA IR+WMGNF I+NVAK A+R+G
Sbjct: 447 GILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAARLG 506
Query: 2190 QSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIP 2011
QS SSTET +++++ E I+D++ G +Y+FSDGIG+IS+ FA++VAKKCG+D P
Sbjct: 507 QSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDCT-P 565
Query: 2010 SAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIII 1831
SAFQIRY GYKGVVA+DP + +KLSLRNSMRKY S N LDVL +K++PC+LNRQ+I
Sbjct: 566 SAFQIRYGGYKGVVAVDPE-SPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQLIT 624
Query: 1830 LLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPR 1651
LLSTLG+KD VFE Q +A+ +++ L D KA EVL M +GE N+L +ML+CGY P
Sbjct: 625 LLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGYKPN 684
Query: 1650 SEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHP---- 1483
EP+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDET TL+YG+VF+Q ++
Sbjct: 685 EEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNRLRD 744
Query: 1482 -SEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGP 1306
S+ C D + Y+ V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G
Sbjct: 745 LSDDDSCSYDLPKTYMVV-GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGT 803
Query: 1305 RPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNH 1126
RPHPNECSGSDLDGDIYFV WD L+P + QPMDY +LDH+VT++E++E+F N+
Sbjct: 804 RPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYFCNY 863
Query: 1125 MVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEY 946
+VND+LGIIAN H +FAD +P A S++CL+LA+L S AVDFPKTG+PA +PREL+ KEY
Sbjct: 864 IVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYAKEY 923
Query: 945 PDFMEKDDKKTYRSDRILGKLYRSVKGVATLD--YNIRLDNKKDIYDTELIVCGFDGYVD 772
PDFMEK DK TY+S ++GKL+R VK ++ D + + + YDTE+ V GF YVD
Sbjct: 924 PDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTEMEVDGFMDYVD 983
Query: 771 EALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNS 592
+A+ YK YD + LM +Y +E EI+SGNI + E +V S
Sbjct: 984 DAIYYKTNYDYKLGNLMDYYGIKTEGEILSGNITKMSKSFNKRRD-----AEAVNVAVRS 1038
Query: 591 LMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDIL 412
L KEAR WF + + KASAWYHV+YHP + ++ + + +SFPW ++ L
Sbjct: 1039 LRKEARSWFNEGS-SDDDAYAKASAWYHVTYHPSFWGSYNDEGMNRDHYLSFPWCVYPQL 1097
Query: 411 LEIKKKRLSRKD 376
L+IKK+++S ++
Sbjct: 1098 LQIKKEKMSMRN 1109
>gb|ESW25207.1| hypothetical protein PHAVU_003G016600g [Phaseolus vulgaris]
Length = 1145
Score = 842 bits (2175), Expect = 0.0
Identities = 433/852 (50%), Positives = 590/852 (69%), Gaps = 8/852 (0%)
Frame = -2
Query: 2907 NLAILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKL 2728
NL + P+G ++P+ ++FK+N+L+Q + P L+ F+ + +R + ++ A KL
Sbjct: 296 NLVPIVAPQGVEIPYDILFKVNSLVQHACLPGPALNADFYRLVDPRRMPLDFIENALEKL 355
Query: 2727 ECNAENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEI 2548
+ E ++P WL + S + + L GL Y+ +V +TP ++YFC PE+
Sbjct: 356 YYSKE-FCYEPAKWLTNQYNKYLKSKHHPRSPTISLDAGLVYVRRVQITPCKVYFCGPEV 414
Query: 2547 QVSNRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQE 2368
VSNRVLRHF EH++NF+RVSFVDE + S+DLS +K+TE+Y+RILD+L+
Sbjct: 415 NVSNRVLRHFHEHLDNFIRVSFVDEELDKMFSTDLS-----SRAQKKTEVYKRILDILKN 469
Query: 2367 GIVIGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMG 2191
GI+IG+KKFEFLA+SSSQLRE+SLWMFA TG SA IR+WMGNF I+NVAK A+R+G
Sbjct: 470 GILIGDKKFEFLAFSSSQLRENSLWMFAPTGTGCSAAFIREWMGNFSRIRNVAKYAARLG 529
Query: 2190 QSLSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIP 2011
QS SSTET +++++ E I+D++ G +Y+FSDGIG+IS+ FA++VAKKCG+D P
Sbjct: 530 QSFGSSTETLSVRRDEIEIIHDVKRTCGGIEYVFSDGIGKISLEFAKRVAKKCGYDCT-P 588
Query: 2010 SAFQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIII 1831
SAFQIRY GYKGVVA+DP + +KLSLRNSMRKY S N LDVL +K++PC+LNRQ+I
Sbjct: 589 SAFQIRYGGYKGVVAVDPE-SPYKLSLRNSMRKYDSDNTKLDVLGRSKFQPCFLNRQLIT 647
Query: 1830 LLSTLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPR 1651
LLSTLG+KD VFE Q +A+ +++ L D KA EVL M +GE N+L +ML+CGY P
Sbjct: 648 LLSTLGIKDGVFEKKQREAVDQLNTILTDSLKAQEVLDLMSTGEITNVLKEMLICGYKPN 707
Query: 1650 SEPYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHP---- 1483
EP+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDET TL+YG+VF+Q ++
Sbjct: 708 EEPFLSMMLQVFRASKLLELRLKSRIFIPKGRAMMGCLDETSTLEYGQVFVQFSNNRLRD 767
Query: 1482 -SEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGP 1306
S+ C D + Y+ V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G
Sbjct: 768 LSDDDSCSYDLPKTYMVV-GKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGT 826
Query: 1305 RPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNH 1126
RPHPNECSGSDLDGDIYFV WD L+P + QPMDY +LDH+VT++E++E+F N+
Sbjct: 827 RPHPNECSGSDLDGDIYFVCWDPELVPSGEVQPMDYTPSSTIELDHDVTIEEVEEYFCNY 886
Query: 1125 MVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEY 946
+VND+LGIIAN H +FAD +P A S++CL+LA+L S AVDFPKTG+PA +PREL+ KEY
Sbjct: 887 IVNDSLGIIANAHTVFADNQPGKAMSAQCLQLAKLFSTAVDFPKTGVPAVIPRELYAKEY 946
Query: 945 PDFMEKDDKKTYRSDRILGKLYRSVKGVATLD--YNIRLDNKKDIYDTELIVCGFDGYVD 772
PDFMEK DK TY+S ++GKL+R VK ++ D + + + YDTE+ V GF YVD
Sbjct: 947 PDFMEKSDKVTYKSPNVIGKLFREVKEISADDSISSFTQEVARRSYDTEMEVDGFMDYVD 1006
Query: 771 EALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNS 592
+A+ YK YD + LM +Y +E EI+SGNI + E +V S
Sbjct: 1007 DAIYYKTNYDYKLGNLMDYYGIKTEGEILSGNITKMSKSFNKRRD-----AEAVNVAVRS 1061
Query: 591 LMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDIL 412
L KEAR WF + + KASAWYHV+YHP + ++ + + +SFPW ++ L
Sbjct: 1062 LRKEARSWFNEGS-SDDDAYAKASAWYHVTYHPSFWGSYNDEGMNRDHYLSFPWCVYPQL 1120
Query: 411 LEIKKKRLSRKD 376
L+IKK+++S ++
Sbjct: 1121 LQIKKEKMSMRN 1132
>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 842 bits (2174), Expect = 0.0
Identities = 438/859 (50%), Positives = 577/859 (67%), Gaps = 14/859 (1%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
IL PP+G +PF ++FK+N L+Q G +S PTLD FF + +R ++ ++ A KL +
Sbjct: 261 ILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLY-H 319
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
+ ++P WL E+ + + L GL Y+ +V +TP ++YFC PE+ VS
Sbjct: 320 LKECCYEPVRWLSEQYRTYVKKPV-AGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVS 378
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRVLR++ E I+NFLRVSF+DEN + S+ +S +RT +Y+RIL +LQ GIV
Sbjct: 379 NRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEG--RRTGVYRRILSILQNGIV 436
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 2179
IG+KKF+FLA+SSSQLR++S WMFAS ++A IR WMG+F I+NVAK A+R+GQS S
Sbjct: 437 IGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFS 496
Query: 2178 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1999
SS ET + K++ E I DIE+ + Y+FSDGIG+IS A +VA KCG PSAFQ
Sbjct: 497 SSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQ 556
Query: 1998 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1819
IRY GYKGVVA+DPT +S KLSLR SM KY S N +LDVL+W+KY+P +LNRQ+I LLST
Sbjct: 557 IRYGGYKGVVAVDPT-SSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLST 615
Query: 1818 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1639
LGVKD VFE Q A+ +D+ L+D A E L+ M GEN N+L +MLMCGY P +EP+
Sbjct: 616 LGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPF 675
Query: 1638 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD 1459
L MML+ FRA+KLLEL+ + RIFV NGR++MGCLDETRTL+YGEVF+QI+ ++ D
Sbjct: 676 LSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD 735
Query: 1458 D-------KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRP 1300
+ +EGK+VVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RP
Sbjct: 736 SLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRP 795
Query: 1299 HPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMV 1120
HPNECSGSDLDGDIYFV WD LIPPQ PMDY P K LDH+V ++E++E+F N++V
Sbjct: 796 HPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIV 855
Query: 1119 NDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPD 940
ND+LGIIAN H +FAD+E D A C LA+L SIAVDFPKTG+PAE+PR L KEYPD
Sbjct: 856 NDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPD 915
Query: 939 FMEKDDKKTYRSDRILGKLYRSVKGVATLDYNIR---LDNKKDIYDTELIVCGFDGYVDE 769
FMEK DK TY S ++GKL+R VK +A + NIR D + YD ++ V GF+ YV +
Sbjct: 916 FMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSD 975
Query: 768 ALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSL 589
A YK YD + LM +Y +E+EI+SG+I + + E +V SL
Sbjct: 976 AFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRR-----KDAEAIGLAVKSL 1030
Query: 588 MKEARGWFERSKITTKNRC----PKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLH 421
KEAR WF + T + KASAWYHV+YHPDY +E + +SFPW ++
Sbjct: 1031 RKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNE-GMDRDHFLSFPWCVY 1089
Query: 420 DILLEIKKKRLSRKDSNMS 364
D L+ K+K++S + ++S
Sbjct: 1090 DKLIHTKRKKMSGRSLHLS 1108
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 837 bits (2161), Expect = 0.0
Identities = 435/851 (51%), Positives = 580/851 (68%), Gaps = 13/851 (1%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRN--SVAKLKKAFTKLE 2725
I+ PP+G +P+ ++FK+N L+Q G ++ P LD+ F+ + R S++ ++ A KL
Sbjct: 271 IVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY 330
Query: 2724 CNAENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQ 2545
+ + ++P WL ++ + S + L GL Y+++V VTPSR+YFC PEI
Sbjct: 331 -HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 389
Query: 2544 VSNRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEG 2365
VSNRVLRHF I+NFLR+SF+DE+ + S+DLS + + RT IY RIL L+ G
Sbjct: 390 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 449
Query: 2364 IVIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQS 2185
I+IG++KFEFLA+SSSQLRESS WMFAS ++A IR+WMGNF I+NVAK A+R+GQS
Sbjct: 450 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 509
Query: 2184 LSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSA 2005
SSS ET + ++ E I D+++E KY+FSDGIG++S FA +VA KCG PSA
Sbjct: 510 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSA 569
Query: 2004 FQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILL 1825
FQIRY GYKGVVA DPT +S KLSLR+SMRKY S LDVL+W+KY+PC+LNRQ+I LL
Sbjct: 570 FQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 628
Query: 1824 STLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSE 1645
STLG+ D +FE Q +A+ +D+ L D KA E L+ M GEN NIL ++L+CGY P +E
Sbjct: 629 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 688
Query: 1644 PYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPS----- 1480
P+L MML+ FRASKLLEL+ + RIF+ NGR++MGCLDETRTL YG+VF+QI+
Sbjct: 689 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 748
Query: 1479 -EKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPR 1303
E + + V+G VVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G R
Sbjct: 749 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 808
Query: 1302 PHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHM 1123
PHPNECSGSDLDGDIYFV WD LIPPQ PMDY QLDH+V +++++E+F N++
Sbjct: 809 PHPNECSGSDLDGDIYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYI 868
Query: 1122 VNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYP 943
VND+LGIIAN H +FAD+EP A+S CL+LAE SIAVDFPKTG+PAE+P L+ KEYP
Sbjct: 869 VNDSLGIIANAHTVFADREPHKARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYP 928
Query: 942 DFMEKDDKKTYRSDRILGKLYRSVKGVATLDYNIRLDNK---KDIYDTELIVCGFDGYVD 772
DFMEK DK TY S ++GKL+R+VK +A IRL K + YD ++ V GF+ ++D
Sbjct: 929 DFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHID 988
Query: 771 EALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNS 592
+A+ +K YD + LM +Y +EAEI++G+I + E +V +
Sbjct: 989 DAIYHKGNYDYKLGNLMDYYGIKTEAEILTGSIMKMSKSFTKRRD-----AEAIGMAVRA 1043
Query: 591 LMKEARGWF-ERSKITTKNRC-PKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHD 418
L KEAR WF E+S T++ KASAWYHV+YHPDY + + + +SFPW ++D
Sbjct: 1044 LRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPDYWGCYNH-GMNRDHFLSFPWCVYD 1102
Query: 417 ILLEIKKKRLS 385
L+EIKK + S
Sbjct: 1103 RLVEIKKDKTS 1113
>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
cacao]
Length = 1109
Score = 835 bits (2158), Expect = 0.0
Identities = 443/852 (51%), Positives = 578/852 (67%), Gaps = 7/852 (0%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ P G D+P+ ++FK+N L+Q G I P LD F+ ++ R + A KL
Sbjct: 268 IVGPSLGIDLPYEILFKINLLVQNGCIPGPALDANFYRLVNPCRIDKVYIDHALEKLYYL 327
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
E +P WL E+ K S +N + L GL + +V +TPSR+YFC PEI VS
Sbjct: 328 KE-CCFEPSKWLLEQYKGYIASKKNPGSPVISLDDGLVNVRRVQITPSRVYFCGPEINVS 386
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRVLRHF + I+NFLR++FVDE + S+DL T NR T EIY RIL L+ GIV
Sbjct: 387 NRVLRHFHDDIDNFLRITFVDEELEKIHSTDLL--TRNRIT----EIYGRILSTLKNGIV 440
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 2179
IG+K+FEFLA+SSSQLRE+S WMFAS ++A IR WMG F I+NVAK A+R+GQS S
Sbjct: 441 IGDKQFEFLAFSSSQLRENSAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFS 500
Query: 2178 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1999
SSTET + K++ E I+D+E++R+G Y+FSDGIG+IS FA++VA KC +G+ PSAFQ
Sbjct: 501 SSTETLSVAKDEIEIIDDVEIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQ 560
Query: 1998 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1819
IR G+KGVVA+DPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLST
Sbjct: 561 IRIGGFKGVVAVDPT-SSKKLSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLST 619
Query: 1818 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1639
LGV D FE Q + + +++ L D KA E L+ M GEN NIL +ML+CGY P +EP+
Sbjct: 620 LGVPDHAFEEKQREVVDQLNAILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPF 679
Query: 1638 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD 1459
L MML+ FRASKLLEL+ ++RIFV+NGR++MGCLDETRTL YG+VF+Q++ +++
Sbjct: 680 LSMMLQTFRASKLLELRTKSRIFVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQR--- 736
Query: 1458 DKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSG 1279
V+GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSG
Sbjct: 737 ------FIVQGKVVVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSG 790
Query: 1278 SDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGII 1099
SDLDGDIYFV WD LIP + PMDY P K L+HEVT++E++E+F N++VND+LGII
Sbjct: 791 SDLDGDIYFVCWDPELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGII 850
Query: 1098 ANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDK 919
AN H +FAD+EP A SS+C LA+L SIAVDFPKTG+PAE+P+EL KEYPDFMEK DK
Sbjct: 851 ANAHTVFADREPRKAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDK 910
Query: 918 KTYRSDRILGKLYRSVKGVATLDYNIR---LDNKKDIYDTELIVCGFDGYVDEALKYKRM 748
TY+S ++GKL+R VK +A + IR + + YD ++ V G++ YVD+A +K
Sbjct: 911 PTYQSYNVIGKLFREVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSN 970
Query: 747 YDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGW 568
YD + LM++Y +EAEI+SG I + E +V SL KEAR W
Sbjct: 971 YDYKLGNLMEYYGIKTEAEILSGGIMKMSRSFTKQRD-----AEAIGVAVRSLRKEARSW 1025
Query: 567 FERS----KITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIK 400
F + KASAWYHV+YHP Y +E + +SFPW ++D L+ IK
Sbjct: 1026 FNEKGNGLDSEADDLYAKASAWYHVTYHPSYWGLYNE-GMNRNHFLSFPWCVYDKLILIK 1084
Query: 399 KKRLSRKDSNMS 364
KK SR++S +S
Sbjct: 1085 KKVTSRRNSRLS 1096
>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
Length = 1115
Score = 833 bits (2152), Expect = 0.0
Identities = 449/862 (52%), Positives = 584/862 (67%), Gaps = 18/862 (2%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL
Sbjct: 260 VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFRLVDPQRRNVACIEQALEKLYYLK 319
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 320 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEGI 2362
RVLR+++E I+NFLRVSFVDE L S+DL +TGN RT IY RIL LQ+G
Sbjct: 379 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGI---RTNIYVRILSTLQKGF 435
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KKFEFLA+SSSQLR++S+WMFAS ++A IR WMG+F IKNVAK A+R+GQS
Sbjct: 436 VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSF 495
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SS ET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAF
Sbjct: 496 GSSKETLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAF 552
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PC+LNRQ++ LLS
Sbjct: 553 QIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLS 611
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGVKD V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP
Sbjct: 612 TLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEP 671
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT--------- 1489
+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T
Sbjct: 672 FLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSE 731
Query: 1488 --HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1315
HP + + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ
Sbjct: 732 DLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQ 787
Query: 1314 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 1135
+G RPHPNECSGSDLDGDIYFV WD +IPP+ Q M+Y P QLDH+VT++E++E+F
Sbjct: 788 KGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYF 847
Query: 1134 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 955
N++VND+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L P
Sbjct: 848 TNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRP 907
Query: 954 KEYPDFMEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGF 787
KEYPDFM+K DK TY S+R++GKLYR VK A + + D + YD +L V GF
Sbjct: 908 KEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGF 967
Query: 786 DGYVDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESL 607
+ Y+DEA YK YD+ + LM +Y +EAEI+SG I + E
Sbjct: 968 EDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAIS 1022
Query: 606 KSVNSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWV 427
+V +L KEAR WF+R + + PKASAWYHV+YHP Y ++ + ISFPW
Sbjct: 1023 IAVRALRKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWC 1080
Query: 426 LHDILLEIKK-KRLSRKDSNMS 364
++D L++IKK K L+R N+S
Sbjct: 1081 VYDQLIQIKKEKALNRPVLNLS 1102
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 833 bits (2152), Expect = 0.0
Identities = 438/853 (51%), Positives = 580/853 (67%), Gaps = 13/853 (1%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I++ PEG ++P+ ++FK+++L+Q G L+ FF + +R ++A ++ A KL
Sbjct: 260 IVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQLVDPRRRNIACIEHALEKLYYL 319
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VS
Sbjct: 320 KE-CCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVS 378
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEG 2365
NRVLR+++E I+NFLRVSFVDE + S+DL +TGN RT+IY RIL L+ G
Sbjct: 379 NRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRASTGNGV---RTDIYLRILSTLRNG 435
Query: 2364 IVIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQS 2185
VIG+KKFEFLA+SSSQLR++S+WMFAS ++A+ IR WMG F I+NVAK A+R+GQS
Sbjct: 436 FVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQS 495
Query: 2184 LSSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSA 2005
SS ET + +++ E I D+ +G YIFSDGIG+IS FA +VA KCG PS
Sbjct: 496 FGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQ-YTPSC 554
Query: 2004 FQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILL 1825
FQIRY GYKGVVA+DP +S KLSLRNSM KY S N LDVL W+KY+PCYLNRQ++ LL
Sbjct: 555 FQIRYGGYKGVVAVDP-YSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLL 613
Query: 1824 STLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSE 1645
STLGVKD VFE Q +A+ +D+ L D KA E L+ M GEN NIL +ML CGY P +E
Sbjct: 614 STLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAE 673
Query: 1644 PYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKC 1465
P+L MML+ FRASKLL+L+ R+RIF+ NGR +MGCLDE+RTL+YG+VF+Q T +++
Sbjct: 674 PFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTG-RRQF 732
Query: 1464 YDDKYQGY--------LTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQG 1309
Y++ + +EG VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ+G
Sbjct: 733 YEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKG 792
Query: 1308 PRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVN 1129
RPHPNECSGSDLDGDIYFV WD L+PP+ +QPMDY P QLDH+VT++E++E+F N
Sbjct: 793 KRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTN 852
Query: 1128 HMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKE 949
++VND+LGIIAN H++FAD+EPDMA S C +LA+L SIAVDFPKTG+PAE+P +L PKE
Sbjct: 853 YIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKE 912
Query: 948 YPDFMEKDDKKTYRSDRILGKLYRSVKG---VATLDYNIRLDNKKDIYDTELIVCGFDGY 778
YPDFMEK DK TY S++++GKL++ VK A+ N +D + YD ++IV GF+ Y
Sbjct: 913 YPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDY 972
Query: 777 VDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSV 598
+DEA YK YD+ + LM +Y +EAEI+SG I + + +V
Sbjct: 973 IDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDADAIGVAV 1027
Query: 597 NSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHD 418
SL KEAR WF+R + + KASAWYHV+YH Y +E + ISFPW ++D
Sbjct: 1028 RSLRKEARTWFKR-RSDIDDMLAKASAWYHVTYHHTYWGFYNE-GLKRDHFISFPWCIYD 1085
Query: 417 ILLEIKKKRLSRK 379
L++IKK + +K
Sbjct: 1086 QLIQIKKAKARKK 1098
>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 830 bits (2145), Expect = 0.0
Identities = 442/852 (51%), Positives = 580/852 (68%), Gaps = 17/852 (1%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL
Sbjct: 260 VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLK 319
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 320 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEGI 2362
RVLR+++E I+NFLRVSFVDE L S++L +TGN RT IY+RIL L++G
Sbjct: 379 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI---RTNIYERILSTLRKGF 435
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KKFEFLA+SSSQLR++S+WMFAS ++ + IR WMG+F IKNVAK A+R+GQS
Sbjct: 436 VIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSF 495
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SS ET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAF
Sbjct: 496 GSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAF 552
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLS
Sbjct: 553 QIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLS 611
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGVKD V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP
Sbjct: 612 TLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEP 671
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT--------- 1489
+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T
Sbjct: 672 FLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSE 731
Query: 1488 --HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1315
HP + + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ
Sbjct: 732 DLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQ 787
Query: 1314 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 1135
+G RPHPNECSGSDLDGDIYFV WD +IPP+ Q M+Y P QLDH VT++E++E+F
Sbjct: 788 KGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYF 847
Query: 1134 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 955
N++VND+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L P
Sbjct: 848 TNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRP 907
Query: 954 KEYPDFMEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGF 787
KEYPDFM+K DK TY S+R++GKL+R VK A +I + D + YD +L V GF
Sbjct: 908 KEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGF 967
Query: 786 DGYVDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESL 607
+ Y+DEA YK YD+ + LM +Y +EAEI+SG I + E
Sbjct: 968 EDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAIS 1022
Query: 606 KSVNSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWV 427
+V +L KEAR WF+R + + PKASAWYHV+YHP Y ++ + ISFPW
Sbjct: 1023 VAVRALRKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWC 1080
Query: 426 LHDILLEIKKKR 391
++D L++IKK++
Sbjct: 1081 VYDQLIQIKKEK 1092
>gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 830 bits (2145), Expect = 0.0
Identities = 442/852 (51%), Positives = 580/852 (68%), Gaps = 17/852 (1%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL
Sbjct: 108 VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLK 167
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 168 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 226
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEGI 2362
RVLR+++E I+NFLRVSFVDE L S++L +TGN RT IY+RIL L++G
Sbjct: 227 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI---RTNIYERILSTLRKGF 283
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KKFEFLA+SSSQLR++S+WMFAS ++ + IR WMG+F IKNVAK A+R+GQS
Sbjct: 284 VIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSF 343
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SS ET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAF
Sbjct: 344 GSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAF 400
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLS
Sbjct: 401 QIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLS 459
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGVKD V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP
Sbjct: 460 TLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEP 519
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT--------- 1489
+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T
Sbjct: 520 FLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSE 579
Query: 1488 --HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1315
HP + + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ
Sbjct: 580 DLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQ 635
Query: 1314 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 1135
+G RPHPNECSGSDLDGDIYFV WD +IPP+ Q M+Y P QLDH VT++E++E+F
Sbjct: 636 KGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYF 695
Query: 1134 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 955
N++VND+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L P
Sbjct: 696 TNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRP 755
Query: 954 KEYPDFMEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGF 787
KEYPDFM+K DK TY S+R++GKL+R VK A +I + D + YD +L V GF
Sbjct: 756 KEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRDVARRSYDADLEVDGF 815
Query: 786 DGYVDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESL 607
+ Y+DEA YK YD+ + LM +Y +EAEI+SG I + E
Sbjct: 816 EDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAIS 870
Query: 606 KSVNSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWV 427
+V +L KEAR WF+R + + PKASAWYHV+YHP Y ++ + ISFPW
Sbjct: 871 VAVRALRKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWC 928
Query: 426 LHDILLEIKKKR 391
++D L++IKK++
Sbjct: 929 VYDQLIQIKKEK 940
>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
tuberosum]
Length = 1115
Score = 830 bits (2144), Expect = 0.0
Identities = 443/852 (51%), Positives = 580/852 (68%), Gaps = 17/852 (1%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL
Sbjct: 260 VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLK 319
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 320 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEGI 2362
RVLR+++E I+NFLRVSFVDE L S+DL +TGN RT IY+RIL L++G
Sbjct: 379 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGI---RTNIYERILSTLRKGF 435
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KKFEFLA+SSSQLR++S+WMFAS ++A IR WMG+F IKNVAK A+R+GQS
Sbjct: 436 VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSF 495
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SSTET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAF
Sbjct: 496 GSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-HTPSAF 552
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLS
Sbjct: 553 QIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLS 611
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGVKD V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP
Sbjct: 612 TLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEP 671
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT--------- 1489
+L MML+ FRASKLL+L+ ++RIF+ NGR +MGCLDE+RTL+YG+VF+Q T
Sbjct: 672 FLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTLEYGQVFVQFTGSGHREFSE 731
Query: 1488 --HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1315
HP + + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ
Sbjct: 732 DLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQ 787
Query: 1314 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 1135
+G RPHPNECSGSDLDGDIYFV WD +IPP+ Q M+Y P QLDH+VT++E++E+F
Sbjct: 788 KGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYF 847
Query: 1134 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 955
N++VND+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L P
Sbjct: 848 TNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPPQLRP 907
Query: 954 KEYPDFMEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGF 787
KEYPDFM+K DK TY S+R++GKLYR VK A + + D + YD +L V GF
Sbjct: 908 KEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGF 967
Query: 786 DGYVDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESL 607
+ Y+DEA YK YD+ + LM +Y +EAEI+SG I + E
Sbjct: 968 EDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAIS 1022
Query: 606 KSVNSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWV 427
+V +L KEAR WF+R + + PKASAWYHV+YHP Y ++ + ISFPW
Sbjct: 1023 IAVRALRKEARTWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWC 1080
Query: 426 LHDILLEIKKKR 391
++D L++IKK++
Sbjct: 1081 VYDQLIQIKKEK 1092
>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
vesca]
Length = 1119
Score = 830 bits (2143), Expect = 0.0
Identities = 435/850 (51%), Positives = 576/850 (67%), Gaps = 11/850 (1%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ P G D+P+ ++FK+N L+Q G +S PTLDN F+ + +R S ++ A KL N
Sbjct: 264 IVGSPAGIDLPYDILFKINLLVQQGCLSGPTLDNNFYRLVDPRRISRPCIEFALDKLS-N 322
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
+ ++P WL E+ + S + L GL Y+ +V +TPS++YF PE+ VS
Sbjct: 323 LKESCYEPAVWLNEEYRKYMMSKKPPKPALISLDSGLVYVRRVQITPSKVYFSGPEVNVS 382
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NR+LR ++ I+NFLRVSFVDE L S+DLS T R T+ IY R+L VL++GIV
Sbjct: 383 NRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLSPRTSTRKTR----IYNRVLSVLRDGIV 438
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 2179
+G KKFEFLA+SSSQLRE+SLWMFA T SAD+IR MG+F I+NVAK A+R+GQS
Sbjct: 439 VGKKKFEFLAFSSSQLRENSLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYAARLGQSFG 498
Query: 2178 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1999
SSTET + +N+ E I D+ + G KY+FSDGIG+IS FAE+VAKKCG+ PSAFQ
Sbjct: 499 SSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQ 558
Query: 1998 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1819
IRY GYKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PC+LNRQ+I LLST
Sbjct: 559 IRYGGYKGVVAVDPT-SSMKLSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLST 617
Query: 1818 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1639
L V+D VF Q A+ +++ L D KA E L M +GE+ N+L ++LMCGY P EP+
Sbjct: 618 LEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPF 677
Query: 1638 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKK--- 1468
L MML+ FRASKLLEL+ + RIF+ +GRA+MGCLDETRTL+YG+VF+Q + ++
Sbjct: 678 LSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQLFDD 737
Query: 1467 -CYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPN 1291
C +EGKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPN
Sbjct: 738 ICIHSSLDSCFIIEGKVVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPN 797
Query: 1290 ECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDT 1111
ECSGSDLDGDIYFV WD LIPP+ QPMDY PP ++D +VT++E++E+FVN++VND+
Sbjct: 798 ECSGSDLDGDIYFVCWDPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDS 857
Query: 1110 LGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFME 931
LGIIAN H +FAD + D A S CL+LA+L SIAVDFPKTG+PAE+P EL+ KEYPDFME
Sbjct: 858 LGIIANAHTVFADSKLDKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFME 917
Query: 930 KDDKKTYRSDRILGKLYRSVKGVATLDYNIRLDNKK---DIYDTELIVCGFDGYVDEALK 760
K DK+TY S ++G+L+R VK +A D +I ++ YD ++ V GF+ Y+++A
Sbjct: 918 KPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFY 977
Query: 759 YKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKE 580
+K YD + ++ +Y +EAEI+SG+I TL + +V SL KE
Sbjct: 978 HKGNYDYKLGNMLDYYGIKTEAEILSGSIMTLSKSFTKRRD-----ADAINVAVKSLRKE 1032
Query: 579 ARGWFERSKITTKNR----CPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDIL 412
AR WF + KASAWYHV+YHP+Y +E + ISFPW + D L
Sbjct: 1033 ARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYFGLYNE-GMNRAHFISFPWCVFDKL 1091
Query: 411 LEIKKKRLSR 382
IKK+++++
Sbjct: 1092 GHIKKEKVNQ 1101
>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 830 bits (2143), Expect = 0.0
Identities = 439/859 (51%), Positives = 578/859 (67%), Gaps = 14/859 (1%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ PP+G ++PF ++FK+N L+Q G +S PTLD FF ++ QR +++ ++ A KL
Sbjct: 259 IVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFRWVDPQRINISFIEHALEKLYY- 317
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
E ++P WL E+ + S + + L GL Y+ +V +TP ++YFC PE+ VS
Sbjct: 318 LEECCYEPVRWLHEQYRTYI-SKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVS 376
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRVLR++ E I+NFLRVSF+DEN + S+ +S N +RT +Y+RIL +LQ GIV
Sbjct: 377 NRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMSNEG--RRTGVYRRILSILQNGIV 434
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 2179
IG+KKF+FLA SSSQLR++S WMFAS ++A IR MG+F I+NVAK A+R+GQS S
Sbjct: 435 IGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFS 494
Query: 2178 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1999
SS ET + K++ E I DIE R+G Y+FSDGIG+IS A +VA KCG PSAFQ
Sbjct: 495 SSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQ 554
Query: 1998 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1819
IRY GYKGVVA+DPT +S KLSLR SM KY S N +LDVLSW+KYRPC+LNRQ+I LLST
Sbjct: 555 IRYGGYKGVVAVDPT-SSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLST 613
Query: 1818 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1639
LGVKD VFE Q +A+ +D+ L+D +A E L+ M GEN NIL +MLMCGY P +EP+
Sbjct: 614 LGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPF 673
Query: 1638 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD 1459
L MML+ FRA+KLLEL+ + RIFV NGR++MGCLDETRTL+YGEVF+QI+ ++ D
Sbjct: 674 LSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGD 733
Query: 1458 D-------KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRP 1300
+ +EGKVVVAKNPCLHPGD+RIL AV P L HMVDC+VFPQ+G RP
Sbjct: 734 SLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRP 793
Query: 1299 HPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMV 1120
HP+ECSGSDLDGDIYFV WDH LIPP+ PMDY P K LDH+V ++E++E+F N++
Sbjct: 794 HPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIG 853
Query: 1119 NDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPD 940
ND LGIIAN H +FAD+E D A C LA+L SIA++FPKTG+PAE+P L KEYPD
Sbjct: 854 NDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPD 913
Query: 939 FMEKDDKKTYRSDRILGKLYRSVKGVATLDYNIR---LDNKKDIYDTELIVCGFDGYVDE 769
FMEK +K TY S ++GKL+R VK VA +Y++R D YD ++ V GF+ YV +
Sbjct: 914 FMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRD 973
Query: 768 ALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSL 589
A YK YD + LM +E+EI+SG+I + + E +V SL
Sbjct: 974 AFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFDKR-----KDAEAIALAVRSL 1028
Query: 588 MKEARGWFERSKITTKNRCPK----ASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLH 421
KEAR WF + T ASAWYHV+YHP Y +E + +SFPW ++
Sbjct: 1029 RKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNE-GMYHDHFLSFPWCVY 1087
Query: 420 DILLEIKKKRLSRKDSNMS 364
D L++IK+ ++S + ++S
Sbjct: 1088 DKLIQIKRDKMSIRSLHLS 1106
>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 830 bits (2143), Expect = 0.0
Identities = 442/852 (51%), Positives = 580/852 (68%), Gaps = 17/852 (1%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P L+ FF + QR +VA +++A KL
Sbjct: 108 VQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPQRRNVACIEQALEKLYYLK 167
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 168 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 226
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEGI 2362
RVLR+++E I+NFLRVSFVDE L S++L +TGN RT IY+RIL L++G
Sbjct: 227 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTGNGI---RTNIYERILSTLRKGF 283
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KK EFLA+SSSQLR++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQS
Sbjct: 284 VIGDKKIEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSF 343
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SS ET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAF
Sbjct: 344 GSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAF 400
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ+I LLS
Sbjct: 401 QIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLS 459
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGVKD V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP
Sbjct: 460 TLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEP 519
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT--------- 1489
+L MML+ FRASKLL+L+ ++RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T
Sbjct: 520 FLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSE 579
Query: 1488 --HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1315
HP + + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ
Sbjct: 580 DLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQ 635
Query: 1314 QGPRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHF 1135
+G RPHPNECSGSDLDGDIYFV WD +IPP+ QPM+Y P QLDH+VT++E++E+F
Sbjct: 636 KGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYF 695
Query: 1134 VNHMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFP 955
N++VND+LGII+N H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L P
Sbjct: 696 TNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDFPKTGVPAEIPSQLRP 755
Query: 954 KEYPDFMEK-DDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGF 787
KEYPDFM+K DK TY S+R++GKL+R VK A + + D + YD +L V GF
Sbjct: 756 KEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSTAIFTRDVARRSYDADLEVDGF 815
Query: 786 DGYVDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESL 607
+ Y+DEA YK YDS + LM +Y +EAEI+SG I + E
Sbjct: 816 EDYIDEAFDYKTEYDSKLGNLMDYYGIKTEAEILSGGIMKTSKTFDRR-----KDAEAIS 870
Query: 606 KSVNSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWV 427
+V +L KEAR WF+R + PKASAWYHV+YHP Y ++ + ISFPW
Sbjct: 871 IAVRALRKEARTWFKRHN-DIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWC 928
Query: 426 LHDILLEIKKKR 391
++D L++IKK++
Sbjct: 929 VYDQLIQIKKEK 940
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 827 bits (2137), Expect = 0.0
Identities = 439/858 (51%), Positives = 588/858 (68%), Gaps = 14/858 (1%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ PP G + + ++FK+N+L+Q ++ P LD F+ + +R ++ A K+ +
Sbjct: 272 IVAPPLGVKISYDILFKVNSLVQHACLAGPALDGDFYRLVDPRRMPREFIEYALEKIYYS 331
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
E ++P WL ++ K S + + L GL Y+ +V +TP ++YFC PE+ VS
Sbjct: 332 KE-FCYEPTKWLTDQYKTYLESKNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVS 390
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRVLRHF EHI+NFLRVSFVDE L S+DLS +RS K+TEIY RIL +L+ GIV
Sbjct: 391 NRVLRHFREHIDNFLRVSFVDEELDKLFSTDLS----SRSQNKKTEIYTRILSILKNGIV 446
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
+G+KKFEFLA+SSSQLRE+SLWMFA T +A IRKWMGNF I+NVAK A+R+GQS
Sbjct: 447 VGDKKFEFLAFSSSQLRENSLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSF 506
Query: 2181 SSSTETYDIQKNDFEFINDIE-LERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSA 2005
SSTET + +++ E I D++ L +G +Y+FSDGIG+IS+ FA++VAKKCG+D PSA
Sbjct: 507 GSSTETLSVHRDEVEIIPDVKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCT-PSA 565
Query: 2004 FQIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILL 1825
FQIRY GYKGVVA+DP + +KLSLR SMRKY S N LDVL+ +K++PCYLNRQ+I LL
Sbjct: 566 FQIRYGGYKGVVAVDPK-SCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLL 624
Query: 1824 STLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSE 1645
STLG+KD VFE Q + + +++ L D KA EVL M +GE N+L +ML+CGY P E
Sbjct: 625 STLGIKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEE 684
Query: 1644 PYLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKC 1465
P+L MML+ FRASKLLEL+ ++RIF+ GRA+MGCLDETRTL+YG+VF+Q ++ +
Sbjct: 685 PFLSMMLQTFRASKLLELRLKSRIFIPKGRAMMGCLDETRTLEYGQVFVQFSNNRLQNLS 744
Query: 1464 YD----DKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPH 1297
D D + Y+ V+GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+GPRPH
Sbjct: 745 DDFFSYDLPKNYM-VKGKVVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPH 803
Query: 1296 PNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVN 1117
PNECSGSDLDGDIYFV WDH LIP + PMDY + +LDH+V ++E++E+F N++VN
Sbjct: 804 PNECSGSDLDGDIYFVCWDHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVN 863
Query: 1116 DTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDF 937
D+LGIIAN H +FAD+E A S +C++LA L S AVDFPKTG+PA +P EL KEYPDF
Sbjct: 864 DSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDF 923
Query: 936 MEKDDKKTYRSDRILGKLYRSVKGVATLDYNIRLDNK---KDIYDTELIVCGFDGYVDEA 766
MEK DK TY+S ++GKL+R VK ++T +I K +D YD E+ V GF YVD+A
Sbjct: 924 MEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDA 983
Query: 765 LKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLM 586
+K YD + LM +Y +EAEI+ GNI + E +V SL
Sbjct: 984 FYHKTNYDYKLGNLMDYYGIKTEAEILGGNIMKMSKSFNKRRD-----AEAINMAVRSLR 1038
Query: 585 KEARGWFERSK-----ITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLH 421
KEAR WF + + + KASAWYHV+YHP Y +E + + +SF W ++
Sbjct: 1039 KEARAWFNENSSGDVDSGSSDVYAKASAWYHVTYHPSYWGCYNE-GMNRDHYLSFSWCVY 1097
Query: 420 DILLEIKKKRLSRKDSNM 367
+L++IKK++LS + S++
Sbjct: 1098 PLLVQIKKEKLSIRRSSL 1115
>ref|XP_004498236.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Cicer
arietinum]
Length = 1126
Score = 827 bits (2135), Expect = 0.0
Identities = 435/844 (51%), Positives = 580/844 (68%), Gaps = 8/844 (0%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ PP+G +PF ++FK+N+L+Q G +S LDN F+ + R +V ++ A K+ +
Sbjct: 276 IVAPPQGIYIPFDILFKVNSLVQHGCLSGSELDNAFYCLVDPLRINVDFIEHALEKMYYS 335
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
++ ++P WL ++ + NSN + L GL Y+ +V +TP ++YFC PEI VS
Sbjct: 336 -KDFCYEPARWLKDQYRMYLNSNYPLQSPSISLDNGLVYVRRVQITPCKVYFCGPEINVS 394
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRV+RHF EHI+NFLRVSFVDE L S+DLS S RTE+Y RIL +L+ GIV
Sbjct: 395 NRVVRHFHEHIDNFLRVSFVDEELDKLYSTDLS---SRISVGVRTEVYNRILSILRNGIV 451
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGI-VSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
IG+KKFEFLA+SSSQLRE+SLWMFA T ++A IR WMG+F I+NVAK A+R+GQS
Sbjct: 452 IGDKKFEFLAFSSSQLRENSLWMFAPTATGLTAQFIRAWMGDFSQIRNVAKYAARLGQSF 511
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SSTET + +N+ E I D +++ + +Y+FSDGIG+IS+ FA +VAKKCG+D PSAF
Sbjct: 512 GSSTETLSVNRNEIEIIPDAQVKHDTIEYVFSDGIGKISLEFARRVAKKCGYDST-PSAF 570
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DPT +S KLSLR SM KY S N LDVL+ +KY+PCYLNRQ+I LLS
Sbjct: 571 QIRYGGYKGVVAVDPT-SSVKLSLRKSMYKYDSDNTKLDVLACSKYQPCYLNRQLITLLS 629
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TL V+DSVFE Q++A+ +++ L + KA EVL M +GE NIL +ML CGY P EP
Sbjct: 630 TLKVEDSVFEKKQKEAVNQLNTILTNSLKAQEVLDLMSTGEITNILKEMLFCGYKPNVEP 689
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCY 1462
+L MML+ FRASKLLEL+++ RIF+ GRA+MG LDETRTL+YGEVF+Q ++ Y
Sbjct: 690 FLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNRISSLSY 749
Query: 1461 DDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECS 1282
L V GKVVVAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECS
Sbjct: 750 GSANS--LVVTGKVVVAKNPCLHPGDVRVLKAVDVPALHHMVDCVVFPQKGHRPHPNECS 807
Query: 1281 GSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGI 1102
GSDLDGDIYFV WD LIPP+ +PM+Y S P L H+V ++E++E+F N+++ND+LGI
Sbjct: 808 GSDLDGDIYFVCWDPELIPPETTEPMEYASVQPIVLYHDVEIEEVEEYFTNYILNDSLGI 867
Query: 1101 IANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDD 922
IAN H++FAD+EP AK+ C+ LA+L SIAVDFPKTGIPA +P LF KEYPDFMEK D
Sbjct: 868 IANAHIVFADKEPAKAKAEPCIELAKLFSIAVDFPKTGIPAVIPPHLFAKEYPDFMEKPD 927
Query: 921 KKTYRSDRILGKLYRSVKGVATLDYNI---RLDNKKDIYDTELIVCGFDGYVDEALKYKR 751
K TY+S+ ++GKL+R ++G+ + D +I L+ K YD ++ GF YVD+A +K
Sbjct: 928 KTTYKSNNVIGKLFREIQGIPSRDGSITSFTLEVAKKSYDPDMEFDGFMDYVDDAFYHKT 987
Query: 750 MYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARG 571
YD + LM +Y +E+EI+SGNI + + +V SL KEAR
Sbjct: 988 NYDYKLGNLMDYYGIKNESEILSGNIMRMSKSFNKRRDG-----DAINMAVRSLRKEARS 1042
Query: 570 WFERSKI----TTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEI 403
WF + + KASAWY+V+YH Y +E + +SFPW ++ +L++I
Sbjct: 1043 WFNDDATGVDSGSVDAYAKASAWYYVTYHHSYWGSYNE-GMKRDHFLSFPWCVYHLLVQI 1101
Query: 402 KKKR 391
KK++
Sbjct: 1102 KKEK 1105
>gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 826 bits (2134), Expect = 0.0
Identities = 450/894 (50%), Positives = 587/894 (65%), Gaps = 50/894 (5%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P LD FF + QR +VA +++A KL
Sbjct: 252 VQPPEGIAIPYKILFKISSLVQHGCIPGPALDVYFFRLVDPQRRNVACIEQALEKLYYLK 311
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 312 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 370
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDL--SWNTGNRSTKKRTEIYQRILDVLQEGI 2362
RVLR+++E I+NFLRVSFVDE L S+DL +TGN RT IY+RIL L++G
Sbjct: 371 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGNGI---RTNIYERILSTLRKGF 427
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KKFEFLA+SSSQLR++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQS
Sbjct: 428 VIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSF 487
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SS ET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAF
Sbjct: 488 GSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAF 544
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DP +S KLSLR SM KY S NN LDVL W+KY+PCYLNRQ++ LLS
Sbjct: 545 QIRYGGYKGVVAVDP-YSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLS 603
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGVKD V E Q++A+ +D+ L D KA E L+ M GEN IL ML CGY P +EP
Sbjct: 604 TLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTTILKAMLNCGYMPDAEP 663
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT--------- 1489
+L MML+ FRASKLL+L+ R+RIF+ NGRA+MGCLDE+RTL+YG+VF+Q T
Sbjct: 664 FLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSE 723
Query: 1488 --HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQ 1315
HP + + + ++G VVVAKNPCLHPGDIR+L AV P L HMVDC+VFPQ
Sbjct: 724 DLHPFNNSRSTNCNF----ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQ 779
Query: 1314 QGPR---------------------------------PHPNECSGSDLDGDIYFVSWDHI 1234
+G R PHPNECSGSDLDGDIYFV WD
Sbjct: 780 KGKRLGMYFNCLPTSEVEVKSAYTLPSSDPTLCFDDRPHPNECSGSDLDGDIYFVCWDQD 839
Query: 1233 LIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGIIANGHLIFADQEPDMA 1054
+IPP+ QPM+Y P QLDH+VT++E++E+F N++VND+LGIIAN H++FAD+EPDMA
Sbjct: 840 MIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMA 899
Query: 1053 KSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDKKTYRSDRILGKLYRS 874
S C +LAEL SIAVDFPKTG+PAE+P +L PKEYPDFM+K DK TY S+R++GKL+R
Sbjct: 900 MSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTTYISERVIGKLFRK 959
Query: 873 VKGVATLDYNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRMYDSSMYRLMKHYEAN 703
VK A +I + D + YD +L V GF+ Y+DEA YK YD+ + LM +Y
Sbjct: 960 VKDKAPQASSIAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIK 1019
Query: 702 SEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGWFERSKITTKNRCPKA 523
+EAEI+SG I + E +V +L KEAR WF+R + + PKA
Sbjct: 1020 TEAEILSGGIMKTSKTFDRR-----KDAEAISIAVRALRKEARTWFKR-RNDIDDMLPKA 1073
Query: 522 SAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIKK-KRLSRKDSNMS 364
SAWYHV+YHP Y ++ + ISFPW ++D L++IKK K L+R N+S
Sbjct: 1074 SAWYHVTYHPTYWGCYNQ-GLKRDHFISFPWCVYDQLIQIKKEKALNRPVLNLS 1126
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 825 bits (2130), Expect = 0.0
Identities = 441/859 (51%), Positives = 577/859 (67%), Gaps = 15/859 (1%)
Frame = -2
Query: 2895 LNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECNA 2716
+ PPEG +P+ ++FK+++L+Q G I P L+ FF + +R +VA ++ A KL
Sbjct: 260 VQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFRLVDPRRRNVACIEHALEKLYYIK 319
Query: 2715 ENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVSN 2536
E + P WL E+ + + L GL Y+ +V VTP ++YFC PE+ VSN
Sbjct: 320 E-CCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSN 378
Query: 2535 RVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIVI 2356
RVLR+++E I+NFLRVSFVDE L S+DL S RT IY+RIL L++G VI
Sbjct: 379 RVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTGSGV-RTNIYERILSTLRKGFVI 437
Query: 2355 GNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLSS 2176
G+KKFEFLA+SSSQLR++S+WMFAS ++A+ IR WMG+F IKNVAK A+R+GQS S
Sbjct: 438 GDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGS 497
Query: 2175 STETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQI 1996
S ET + +++ E I D+++ +G Y+FSDGIG+IS FA +VA KCG PSAFQI
Sbjct: 498 SRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISGDFAHRVASKCGLQ-YTPSAFQI 554
Query: 1995 RYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLSTL 1816
RY GYKGVV +DP +S KLSLR SM KY S N LDVL W+KY+PCYLNRQ+I LLSTL
Sbjct: 555 RYGGYKGVVGVDPD-SSMKLSLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTL 613
Query: 1815 GVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPYL 1636
GVKD V E Q++A+ +D+ L D KA E L+ M GEN NIL ML CGY P +EP+L
Sbjct: 614 GVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFL 673
Query: 1635 RMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT----------- 1489
MML+ FRASKLL+L+ R+RIF+ NGR +MGCLDE+RTL+YG+VF+Q T
Sbjct: 674 SMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDL 733
Query: 1488 HPSEKKKCYDDKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQG 1309
HP + + + ++G VVVAKNPCLHPGDIR+L AV L HMVDC+VFPQ+G
Sbjct: 734 HPFNNSRSTNSNF----ILKGNVVVAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKG 789
Query: 1308 PRPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVN 1129
RPHPNECSGSDLDGDIYFV WD +IPP+ QPM+Y P QLDH+VT++E++E+F N
Sbjct: 790 KRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTN 849
Query: 1128 HMVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKE 949
++VND+LGIIAN H++FAD+EPDMA S C +LAEL SIAVDFPKTG+PAE+P +L PKE
Sbjct: 850 YIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKE 909
Query: 948 YPDFMEKDDKKTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFDGY 778
YPDFM+K DK +Y S+R++GKL+R VK A +I D + YD ++ V GF+ Y
Sbjct: 910 YPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDY 969
Query: 777 VDEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSV 598
+DEA YK YD+ + LM +Y +EAEI+SG I + E +V
Sbjct: 970 IDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFDRR-----KDAEAISVAV 1024
Query: 597 NSLMKEARGWFERSKITTKNRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHD 418
+L KEAR WF+R + + PKASAWYHV+YHP Y ++ ISFPW ++D
Sbjct: 1025 RALRKEARAWFKR-RNDIDDMLPKASAWYHVTYHPTYWGCYNQ-GLKRAHFISFPWCVYD 1082
Query: 417 ILLEIKK-KRLSRKDSNMS 364
L++IKK K +R N+S
Sbjct: 1083 QLIQIKKDKARNRPVLNLS 1101
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 823 bits (2127), Expect = 0.0
Identities = 431/849 (50%), Positives = 574/849 (67%), Gaps = 7/849 (0%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ P D+PF ++FK+N L+Q G I P LD+ F+ + R + A KL
Sbjct: 268 IVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYL 327
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
E ++P WL E+ K S + + L +GL Y+ +V +TPSR+YFC PEI VS
Sbjct: 328 RE-CCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVS 386
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRVLR F I+NFLR+SFVDE + S+++ ++ +RT IY+RIL L+ GIV
Sbjct: 387 NRVLRQFHNDIDNFLRISFVDEELEKIHSTNV------QARGRRTGIYKRILSTLRNGIV 440
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 2179
IGNK+FEFLA+SSSQLRE+S WMFAS ++A IR WMGNF I+NVAK A+R+GQS S
Sbjct: 441 IGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFS 500
Query: 2178 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1999
SSTET + K++ I DIE+ ++G KY+FSDGIG+IS FA++VA KC G PSAFQ
Sbjct: 501 SSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQ 560
Query: 1998 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1819
IR G+KGVVAIDPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLST
Sbjct: 561 IRIGGFKGVVAIDPT-SSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLST 619
Query: 1818 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1639
LGV D FE Q + + +++ L D +A E L+ M GEN NIL +ML+CGY P +EP+
Sbjct: 620 LGVPDRAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPF 679
Query: 1638 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD 1459
L MMLE FRASKLLEL+ +ARIFV GR++MGCLDETRTL YG+VF+Q + +++
Sbjct: 680 LSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERR--- 736
Query: 1458 DKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSG 1279
V+GKV+VAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSG
Sbjct: 737 ------FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSG 790
Query: 1278 SDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGII 1099
SDLDGD+YFV WD LIP + PMDY +LDHEVT++EI+E+F N++VND+LGII
Sbjct: 791 SDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGII 850
Query: 1098 ANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDK 919
+N H FAD+EPD A S CL LA+L SIAVDFPKTG+PAE+P+EL KEYPDFMEK DK
Sbjct: 851 SNAHTAFADREPDKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDK 910
Query: 918 KTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRM 748
+Y+S ++GKL+R VK +A + +I+ + + YD ++ V GF+ Y+D+A +K
Sbjct: 911 PSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSK 970
Query: 747 YDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGW 568
YD + LM +Y +EAEI+ G I + E +V SL KEAR W
Sbjct: 971 YDYKLGNLMDYYGVKTEAEILGGGIMKMSRSFTKKRD-----AEAISMAVRSLRKEARSW 1025
Query: 567 FER--SKITTK--NRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIK 400
F S++ + + KASAWY+V+YHP Y + +E + + +SFPW ++D L++IK
Sbjct: 1026 FNEKGSELDEEIDDAYAKASAWYYVTYHPSYWGQYNE-GMNRDHFLSFPWCVYDKLIQIK 1084
Query: 399 KKRLSRKDS 373
K++ + +++
Sbjct: 1085 KEKAAVREA 1093
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 822 bits (2123), Expect = 0.0
Identities = 430/866 (49%), Positives = 583/866 (67%), Gaps = 21/866 (2%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNS-VAKLKKAFTKLEC 2722
I++PP+ +P+ ++F++N+L+Q G + PTLD +F++ L+ + V + + ++L
Sbjct: 345 IVHPPDQIKLPYKILFRVNSLVQNGFLVGPTLDTEFYNLLNGLPSPFVERSLEDISRLT- 403
Query: 2721 NAENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQV 2542
N +P WL E+ K N L GL Y+++V VTPS++YF PE+ V
Sbjct: 404 ---NCCLEPAKWLQEQYKKYRNLPRRPSPAAISLEPGLVYVHRVQVTPSKVYFYGPEVNV 460
Query: 2541 SNRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGI 2362
SNRVLR F+ +I+NFLR+SF+DE+ S+RS+DLS + + +K T +Y R+L L+ GI
Sbjct: 461 SNRVLRQFSNYIDNFLRISFIDEDFGSIRSTDLSKRMASGAEEKHTTVYGRVLSTLKNGI 520
Query: 2361 VIGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSL 2182
VIG+KKFEFLA+SSSQLR++S WMF+ ++A +IR+WMG+F I+NVAKCA+RMGQS
Sbjct: 521 VIGDKKFEFLAFSSSQLRDNSAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSF 580
Query: 2181 SSSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAF 2002
SSTET +++ + E I+DI +NGK Y+FSDGIG+IS+ FA++VA KCG K PSAF
Sbjct: 581 GSSTETLNVKPEEVERISDI---KNGK-YVFSDGIGKISLEFAKKVALKCGCSEKTPSAF 636
Query: 2001 QIRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLS 1822
QIRY GYKGVVA+DPT + +KLSLR SMRKY+S N LDVL+++K++PC+LNRQ+I LLS
Sbjct: 637 QIRYGGYKGVVAVDPT-SRYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLS 695
Query: 1821 TLGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEP 1642
TLGV+D+VFET Q+ A++ +D L D A E L+ M GEN N+L +ML CGY P SEP
Sbjct: 696 TLGVQDNVFETKQKDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEP 755
Query: 1641 YLRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQIT-------HP 1483
+L MML+ FR KL ELK + RIF+ NGR++MGCLDET L+YG+VF+Q + H
Sbjct: 756 FLSMMLQTFRGLKLSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHE 815
Query: 1482 SEKKKCYDD-KYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGP 1306
K + Q V GKV+VAKNPCLHPGD+RIL A+ P L HMV+C+VFPQ+G
Sbjct: 816 FGLSKINESGSDQRVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGK 875
Query: 1305 RPHPNECSGSDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNH 1126
RPHPNECSGSDLDGDIYFVSWD +LIP PM+Y P LDHEVT++EI+E+F N+
Sbjct: 876 RPHPNECSGSDLDGDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTNY 935
Query: 1125 MVNDTLGIIANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEY 946
M+ND+LGIIAN H +FAD+EP A S+ C+ LA L S+AVDFPKTG+PA++P+ L+ KEY
Sbjct: 936 MINDSLGIIANAHTVFADKEPMKADSTPCVDLANLFSVAVDFPKTGVPADIPQHLYVKEY 995
Query: 945 PDFMEKDDKKTYRSDRILGKLYRSVKGVATLDYNIRLDNKK---DIYDTELIVCGFDGYV 775
PDFM+K DK TY+S R++GKL+R VK + I K YD ++ V GF+ Y+
Sbjct: 996 PDFMDKTDKPTYQSRRVIGKLFREVKDLPPHTSAITSFTKSVALKSYDLDMEVDGFELYL 1055
Query: 774 DEALKYKRMYDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVN 595
D+A YK YD + LM HY +EAEI+SGNI +L E ++
Sbjct: 1056 DDAHWYKSEYDFKLAGLMDHYGIKTEAEIVSGNILSLAKSFTKRRD-----AEAIALAMR 1110
Query: 594 SLMKEARGWFERSKITT--------KNRCPKASAWYHVSYHPDYRHEK-SETNTSMESLI 442
SL KE RGWF+ + + KASAWYH++YHP+Y E + I
Sbjct: 1111 SLRKEVRGWFKEKRSVVDEGDYSLDDDVYAKASAWYHITYHPEYWGSYFEEDGRNRAHFI 1170
Query: 441 SFPWVLHDILLEIKKKRLSRKDSNMS 364
SFPW ++D L+ IK+ R+ R ++ S
Sbjct: 1171 SFPWCIYDKLIHIKRHRIGRGRNSRS 1196
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 818 bits (2113), Expect = 0.0
Identities = 431/849 (50%), Positives = 572/849 (67%), Gaps = 7/849 (0%)
Frame = -2
Query: 2898 ILNPPEGCDVPFSVIFKLNALLQCGRISWPTLDNKFFDFLHSQRNSVAKLKKAFTKLECN 2719
I+ P D+PF ++FK+N L+Q G I P LD+ F+ + R + A KL
Sbjct: 268 IVCPSRVIDLPFEILFKVNLLVQNGCIPGPALDDTFYRLVDPCRMHKVYIDHALEKLYYL 327
Query: 2718 AENVVHKPFDWLGEKLKAVENSNENCDTDDKPLAKGLFYINKVDVTPSRIYFCRPEIQVS 2539
E ++P WL E+ K S + + L +GL Y+ +V +TPSR+YFC PEI VS
Sbjct: 328 RE-CCYEPSRWLFEEYKNFSRSRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVS 386
Query: 2538 NRVLRHFAEHIENFLRVSFVDENRASLRSSDLSWNTGNRSTKKRTEIYQRILDVLQEGIV 2359
NRVLR F I+NFLR+SFVDE + S+++ ++ +RT IY+RIL L+ GIV
Sbjct: 387 NRVLRQFHNDIDNFLRISFVDEELEKIHSTNV------QARGRRTGIYKRILSTLRNGIV 440
Query: 2358 IGNKKFEFLAYSSSQLRESSLWMFASTGIVSADSIRKWMGNFWAIKNVAKCASRMGQSLS 2179
IGNK+FEFLA+SSSQLRE+S WMFAS ++A IR WMGNF I+NVAK A+R+GQS S
Sbjct: 441 IGNKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFS 500
Query: 2178 SSTETYDIQKNDFEFINDIELERNGKKYIFSDGIGRISVAFAEQVAKKCGFDGKIPSAFQ 1999
SSTET + K++ I DIE+ ++G KY+F DGIG+IS FA++VA KC G PSAFQ
Sbjct: 501 SSTETLSVSKDEINLIPDIEIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQ 560
Query: 1998 IRYAGYKGVVAIDPTMTSHKLSLRNSMRKYTSCNNSLDVLSWAKYRPCYLNRQIIILLST 1819
IR G+KGVVAIDPT +S KLSLR SM KY S N LDVL+W+KY+PC+LNRQ+I LLST
Sbjct: 561 IRIGGFKGVVAIDPT-SSWKLSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLST 619
Query: 1818 LGVKDSVFETLQEQAITSIDSALRDRNKAIEVLQSMYSGENQNILVDMLMCGYCPRSEPY 1639
LGV D FE Q + + +++ L D +A E L+ M GEN NIL +ML+CGY P +EP+
Sbjct: 620 LGVPDYAFEKKQREVVDQLNALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPF 679
Query: 1638 LRMMLEEFRASKLLELKKRARIFVSNGRALMGCLDETRTLKYGEVFIQITHPSEKKKCYD 1459
L MMLE FRASKLLEL+ +ARIFV GR++MGCLDETRTL YG+VF+Q + +++
Sbjct: 680 LSMMLETFRASKLLELRTKARIFVQKGRSMMGCLDETRTLNYGQVFVQFSGSRSERR--- 736
Query: 1458 DKYQGYLTVEGKVVVAKNPCLHPGDIRILIAVKSPKLQHMVDCIVFPQQGPRPHPNECSG 1279
V+GKV+VAKNPCLHPGD+R+L AV P L HMVDC+VFPQ+G RPHPNECSG
Sbjct: 737 ------FIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSG 790
Query: 1278 SDLDGDIYFVSWDHILIPPQDYQPMDYFSGPPKQLDHEVTMKEIQEHFVNHMVNDTLGII 1099
SDLDGD+YFV WD LIP + PMDY +LDHEVT++EI+E+F N++VND+LGII
Sbjct: 791 SDLDGDVYFVCWDPELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGII 850
Query: 1098 ANGHLIFADQEPDMAKSSKCLRLAELHSIAVDFPKTGIPAEVPRELFPKEYPDFMEKDDK 919
+N H FAD+EP A S CL LA+L SIAVDFPKTG+PAE+P+EL KE+PDFMEK DK
Sbjct: 851 SNAHTAFADREPGKAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDK 910
Query: 918 KTYRSDRILGKLYRSVKGVATLDYNIRL---DNKKDIYDTELIVCGFDGYVDEALKYKRM 748
+Y+S ++GKL+R VK +A + +I+L + K YD ++ V GF Y+D+A YK
Sbjct: 911 PSYQSYNVIGKLFREVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSK 970
Query: 747 YDSSMYRLMKHYEANSEAEIISGNIQTLXXXXXXXXXXNGEIREESLKSVNSLMKEARGW 568
YD + LM +Y +EAEI+SG I + E +V SL KEAR W
Sbjct: 971 YDYKLGNLMDYYGVKTEAEILSGGIMKMSRSFTKKRD-----AESISMAVRSLRKEARSW 1025
Query: 567 FER--SKITTK--NRCPKASAWYHVSYHPDYRHEKSETNTSMESLISFPWVLHDILLEIK 400
F S++ + + KASAWY+V+YH Y + +E + + +SFPW ++D L++IK
Sbjct: 1026 FNEKGSELDEEIDDAYAKASAWYYVTYHHSYWGQYNE-GMNRDHFLSFPWCVYDKLIQIK 1084
Query: 399 KKRLSRKDS 373
K++ + +++
Sbjct: 1085 KEKAALREA 1093