BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00012734
         (2141 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006839002.1| hypothetical protein AMTR_s00002p00271910 [A...   173   3e-40
gb|EXB51131.1| hypothetical protein L484_009095 [Morus notabilis]     161   1e-36
ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containi...   160   3e-36
ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containi...   160   3e-36
ref|XP_002315895.2| hypothetical protein POPTR_0010s12490g [Popu...   157   1e-35
ref|XP_004298459.1| PREDICTED: pentatricopeptide repeat-containi...   155   5e-35
ref|XP_002517094.1| pentatricopeptide repeat-containing protein,...   155   7e-35
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,...   154   2e-34
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi...   154   2e-34
ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group] g...   154   2e-34
gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sat...   154   2e-34
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ...   154   2e-34
ref|XP_002888819.1| pentatricopeptide repeat-containing protein ...   153   3e-34
ref|XP_006650574.1| PREDICTED: pentatricopeptide repeat-containi...   152   4e-34
gb|EOY05751.1| Pentatricopeptide repeat superfamily protein, put...   151   1e-33
ref|XP_006849933.1| hypothetical protein AMTR_s00022p00121040 [A...   150   2e-33
ref|NP_177262.1| pentatricopeptide repeat-containing protein [Ar...   150   2e-33
ref|XP_004956188.1| PREDICTED: pentatricopeptide repeat-containi...   150   3e-33
ref|XP_003610755.1| Pentatricopeptide repeat-containing protein ...   149   4e-33
ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containi...   149   5e-33

>ref|XP_006839002.1| hypothetical protein AMTR_s00002p00271910 [Amborella trichopoda]
            gi|548841508|gb|ERN01571.1| hypothetical protein
            AMTR_s00002p00271910 [Amborella trichopoda]
          Length = 569

 Score =  173 bits (438), Expect = 3e-40
 Identities = 111/398 (27%), Positives = 189/398 (47%), Gaps = 14/398 (3%)
 Frame = -2

Query: 1315 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1136
            V  V+    ++W   L  F WA +Q+ + ++TE Y+++V ILG  K+FD MW ++EE ++
Sbjct: 139  VNKVLRRYNDDWISALNFFRWASKQVGFVNSTETYDMMVDILGKMKQFDKMWDIVEEMRK 198

Query: 1135 EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCME---NR 965
             G L  L T+  + +    AG  +D+++ F  +  L     T+++N ++  LC E    R
Sbjct: 199  IGGLISLSTVSKMMRRLSGAGKWKDTIDVFYGIESLGLRKDTSSMNVVLDTLCKERNVER 258

Query: 964  KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYI 785
              D  LVL R   + PPN  T+++LIH +C+  +L EA     EM      P + +Y+ +
Sbjct: 259  ARDLFLVLGR---EIPPNAHTFNVLIHGWCKAKRLEEAEWTMREMKGYGFNPCVISYTSL 315

Query: 784  IKALSANKQTEFAQKLFDHMKA-----------YALRKFGRTPKVGEFLTDTGLLDEGPS 638
            ++A  +    +  + L + M+A             +  FG+  +  E L     + +   
Sbjct: 316  VEAYCSLHDFQNVEALLNEMEAKGCPPSVVTYTVVMHAFGKAKETQEALRIYERMKKSGC 375

Query: 637  NFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFE 458
              D+  Y                     EM   G TPS  TY+++ S +C   +  EA E
Sbjct: 376  TPDALFYNSLIFILGKAGRLRDARTIFEEMPNNGITPSLTTYNTLISVICEHSQEEEALE 435

Query: 457  LFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLC 278
            +   +  +S  PD++T   L++ FC  G + +   L + M  K    +  ++S+ +HGLC
Sbjct: 436  VLREMKESSCKPDIRTYTPLLKMFCKKGRMKVLEYLLHDMIRKDISLDLGTFSLLVHGLC 495

Query: 277  YNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGN 164
              S  + A  +F EMV  G+VP + T+R L   L R N
Sbjct: 496  RASKLDGACLFFEEMVIRGLVPKYNTFRILREELDRMN 533


>gb|EXB51131.1| hypothetical protein L484_009095 [Morus notabilis]
          Length = 542

 Score =  161 bits (407), Expect = 1e-36
 Identities = 109/408 (26%), Positives = 181/408 (44%), Gaps = 15/408 (3%)
 Frame = -2

Query: 1363 PEFVPQIKSG---SLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 1193
            PE   Q   G   S+    V  +++   ++W      F WAK Q  YKH+ E Y+L++ I
Sbjct: 109  PEEAAQALDGCGLSVSENTVEQLLKRFSHDWVPAFGVFKWAKLQAGYKHSPELYDLMIDI 168

Query: 1192 LGNAKKFDIMWQLLEEFKR-EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSV 1016
            LG AKKF +MW+L+EE    EG++  L T+    +   R    +++++ F+ + R   S 
Sbjct: 169  LGKAKKFQLMWELIEEMNNLEGYI-SLSTMTKAMRRLARVCMYKEAIDVFRGIERFGLSK 227

Query: 1015 GTAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFE 836
               ALN+L+  L  E        V   +K+  P N+ +++ILI+ +C   +L +A  I E
Sbjct: 228  DVVALNNLMDALMKEKSVEHAYEVFSEVKKSIPVNDQSFNILINGWCRARQLDKARKIME 287

Query: 835  EMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTP 689
            +M ++  +P   +Y+ ++ A   +K       L D M               +   G+  
Sbjct: 288  DMEKHGFKPDTFSYTCLVDAYCGDKDFRKVYALLDEMNDKGCTPNIVTYTILMHALGKAK 347

Query: 688  KVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYS 509
            +V E L     + E     D+  Y                     +M K+G  P+  TY+
Sbjct: 348  QVNEALKVYEKMKENGCVPDASFYNSLIFILGKAGRLKDAREVFDDMSKQGVAPNGLTYT 407

Query: 508  SIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEK 329
            ++ S +C      EA +L   +   S  PDL T   L++  C    + +   L   M   
Sbjct: 408  TMISCVCDHSLEEEALKLLKKMEEESCKPDLGTYAPLLKMCCKKKRMKVLYFLLNHMFNN 467

Query: 328  GYGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLL 185
                +  +YS+ I GLC +   E A  +F EMV  G+VP +  Y++LL
Sbjct: 468  DVSIDVGTYSLLITGLCKSGKVEHACSFFEEMVSKGLVPQYSPYKRLL 515


>ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Cucumis sativus]
          Length = 614

 Score =  160 bits (404), Expect = 3e-36
 Identities = 105/406 (25%), Positives = 180/406 (44%), Gaps = 14/406 (3%)
 Frame = -2

Query: 1363 PEFVPQIKSGS---LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 1193
            PE V +  +G    +    V  +++   N+W      F WAK Q+ Y+H+ E+Y  +V I
Sbjct: 180  PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 239

Query: 1192 LGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVG 1013
            LG AK F +MW+L++E         L+T+  + +   RAG  ++++ AF+ + +   S  
Sbjct: 240  LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 299

Query: 1012 TAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEE 833
            T A+N L+  L  E    D   V R LK   P N  ++++LIH +C+  KL EA  I  E
Sbjct: 300  TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 359

Query: 832  MVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPK 686
            + ++ ++P + +Y+  I+A    K      K+   M+              +   G+  +
Sbjct: 360  VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 419

Query: 685  VGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSS 506
            + E L     + +     DS  Y                     +M K+G TP   TY++
Sbjct: 420  INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 479

Query: 505  IFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKG 326
            + S  C   +   A  L   +   S  PDL+T + L++ FC    + +   L   M +  
Sbjct: 480  LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 539

Query: 325  YGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 188
                  +Y++ + GLC N     A  +F EM+   +VP   T++ L
Sbjct: 540  VSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 585


>ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  160 bits (404), Expect = 3e-36
 Identities = 105/406 (25%), Positives = 180/406 (44%), Gaps = 14/406 (3%)
 Frame = -2

Query: 1363 PEFVPQIKSGS---LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHI 1193
            PE V +  +G    +    V  +++   N+W      F WAK Q+ Y+H+ E+Y  +V I
Sbjct: 157  PENVAEALNGKAYRVSNTLVAQLLKRFHNDWIQAYGIFKWAKDQIPYRHSPESYNSMVDI 216

Query: 1192 LGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVG 1013
            LG AK F +MW+L++E         L+T+  + +   RAG  ++++ AF+ + +   S  
Sbjct: 217  LGKAKNFRLMWELVDEMNHLAGSVSLETMSKVIRRLARAGRHQEAIHAFRNIEKYGISTD 276

Query: 1012 TAALNSLIRVLCMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEE 833
            T A+N L+  L  E    D   V R LK   P N  ++++LIH +C+  KL EA  I  E
Sbjct: 277  TTAMNVLMDALVKEASVEDAHNVFRELKCSIPFNLASFNVLIHGYCKAKKLDEAWKIMGE 336

Query: 832  MVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPK 686
            + ++ ++P + +Y+  I+A    K      K+   M+              +   G+  +
Sbjct: 337  VEKSGLEPDVISYTAFIEAHCREKDFRNVDKVLVQMEHKGCKPNVITFTIIMHALGKAKQ 396

Query: 685  VGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSS 506
            + E L     + +     DS  Y                     +M K+G TP   TY++
Sbjct: 397  INEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNT 456

Query: 505  IFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKG 326
            + S  C   +   A  L   +   S  PDL+T + L++ FC    + +   L   M +  
Sbjct: 457  LISCACAHSQEETALTLLLKMEEVSCKPDLKTYHPLLKMFCRKKRMKVLKFLLDHMFKND 516

Query: 325  YGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 188
                  +Y++ + GLC N     A  +F EM+   +VP   T++ L
Sbjct: 517  VSIEAGTYAILVRGLCENGKLHLACSFFGEMLSKAMVPKDSTFKML 562


>ref|XP_002315895.2| hypothetical protein POPTR_0010s12490g [Populus trichocarpa]
            gi|550329653|gb|EEF02066.2| hypothetical protein
            POPTR_0010s12490g [Populus trichocarpa]
          Length = 488

 Score =  157 bits (398), Expect = 1e-35
 Identities = 100/413 (24%), Positives = 193/413 (46%), Gaps = 18/413 (4%)
 Frame = -2

Query: 1339 SGSLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMW 1160
            S  + P  V   ++ + N   L L  F WA++Q  ++++TE+Y  ++  LG  K+F+++W
Sbjct: 64   SMEVSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIW 123

Query: 1159 QLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVL 980
             L+ + K++G L + +T  +I + Y RA  ++++++AF ++ +    + ++ +N L+  L
Sbjct: 124  NLVTDMKQKGLLNK-ETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTL 182

Query: 979  CMENRKNDCSLVLRRLKEKCPPNEM-TYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSL 803
            C   +     LV  ++ ++    ++ +Y+IL+  + +   LS  + ++ EM     +P +
Sbjct: 183  CKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDV 242

Query: 802  ATYSYIIKALSANKQTEFAQKLFDHMKAY-----------------ALRKFGRTPKVGEF 674
             TY  +I A   +++ + A +LF  M+A                  A ++     +  E 
Sbjct: 243  VTYGILINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFEL 302

Query: 673  LTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSH 494
               +G + E P+      Y                     EM K G  PS++TY  I  H
Sbjct: 303  SKASGFVPEAPT------YNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHH 356

Query: 493  LCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCN 314
            L R  K++ A+ +F  +      P + T   ++  FC+   V +A+++W  M+ KG    
Sbjct: 357  LIRAGKTKIAYSVFQKMSCEGCEPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPV 416

Query: 313  RESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPD 155
               +S  I+ LC+ S  ++A  YF EM+  GI P  + +  L   LL     D
Sbjct: 417  MHMFSTLINSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKD 469


>ref|XP_004298459.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
            mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 515

 Score =  155 bits (393), Expect = 5e-35
 Identities = 109/432 (25%), Positives = 184/432 (42%), Gaps = 37/432 (8%)
 Frame = -2

Query: 1339 SGSLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMW 1160
            S  + P  V+ V++ + N   L L  F WA++Q  +KH TE+Y  ++  LG  K+F I+W
Sbjct: 88   SVKVSPTLVVEVLKKLNNAGALALSFFRWAQKQKGFKHCTESYNALIEALGKIKQFKIIW 147

Query: 1159 QLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVL 980
             L+ E   EG L +  T  +I + Y RA  + D+++AF+++ +    +  +  N LI  L
Sbjct: 148  DLVNEMNNEGLLSK-DTFALISRRYARARRVSDAIKAFEKMEKFGIKLEGSDFNRLIDTL 206

Query: 979  CMENRKNDCSLVLRRLKEK------------------------------------CPPNE 908
                +      V   +K++                                      P+ 
Sbjct: 207  SKSRQVEKAQEVFDEMKQRRFKPDIKSYTILLEGWGQQQNFLRLDEVYREMKAEGFDPDV 266

Query: 907  MTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDH 728
            +TY ILI+A C+  K +E + +F EM   N++PS   +  +I  L + K+   A + F+ 
Sbjct: 267  VTYGILINAHCKAKKYNEVIGLFREMEAKNVRPSPHIFCMLINGLGSEKRLAEALEFFER 326

Query: 727  MKAYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEM 548
             KA                  +GL  E P+      Y                     EM
Sbjct: 327  FKA------------------SGLEAEAPT------YNAVVGAYCWSMRMSDAFRVVDEM 362

Query: 547  VKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHF-PDLQTLNTLIETFCSTGH 371
             K G  P+S+TY  I  HL + R++ +A+ +F  +       P + T   L+  FC+   
Sbjct: 363  RKCGIGPNSRTYDIILHHLVKHRRTEQAYSVFQRISREPGCEPTVSTYEILVRMFCNENR 422

Query: 370  VGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRK 191
            V +A+++W  M+ KG       +S  I+ LC+ +  ++A  YF +M+  GI P  + +  
Sbjct: 423  VDMALQVWDQMKTKGVLPRMHMFSTLINTLCHENKLDEACRYFQDMLDMGIRPPTQLFSN 482

Query: 190  LLYGLLRGNNPD 155
            L   LL     D
Sbjct: 483  LKQALLDDGRKD 494


>ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543729|gb|EEF45257.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 549

 Score =  155 bits (392), Expect = 7e-35
 Identities = 100/412 (24%), Positives = 184/412 (44%), Gaps = 12/412 (2%)
 Frame = -2

Query: 1315 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1136
            +  ++    N+W   L  F WAK Q  Y H  + Y+L+V ILG  KKF  MW+L++E + 
Sbjct: 134  ISQLLNRFCNDWVPALGLFTWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMEN 193

Query: 1135 -EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKN 959
             EG++  L T++ + +   RAG+ +D++EAF+ + +L       ALN L+  L  E    
Sbjct: 194  LEGYV-SLVTMKKVMRRLARAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVE 252

Query: 958  DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIK 779
                     K+    +  +++IL+H +C+  KL +A  I +EM +   QP++ +Y+  I+
Sbjct: 253  HAYSAFMEFKDSIHVDFQSFNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIE 312

Query: 778  ALSANKQTEFAQKLFDHMKAYA-----------LRKFGRTPKVGEFLTDTGLLDEGPSNF 632
                 K     + +F  M+  +           +   G+  +V + L    ++       
Sbjct: 313  LYCKLKDFRNVEAIFSEMQEKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVP 372

Query: 631  DSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF 452
            D+  Y                     +M K+G +P   TY+++ +  C   +   A +L 
Sbjct: 373  DASFYSSLIFVLTQSGRLKDAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLL 432

Query: 451  NIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYN 272
              +   S  PD+QT   L++  C    + +   L   M +     +  +Y + + GLC +
Sbjct: 433  RRMEEDSCKPDIQTYAPLLKMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKS 492

Query: 271  SLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGELE 116
               E A  +F EMV  G++P   TY+ L+  L + N  +    +  ++ + E
Sbjct: 493  GKLELACSFFEEMVMKGLIPRDRTYKMLVEELEQNNLTEAKEKIQKLMFQTE 544


>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 439

 Score =  154 bits (388), Expect = 2e-34
 Identities = 105/414 (25%), Positives = 186/414 (44%), Gaps = 12/414 (2%)
 Frame = -2

Query: 1324 PEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEE 1145
            PE V  V+    N   +  R F WA++QL+Y H+  AY  ++  L   +++ IMW L+  
Sbjct: 22   PEIVEDVLRRFENAGMVAYRFFEWAEKQLHYTHSVRAYHTMIESLAKIRQYQIMWDLINA 81

Query: 1144 FKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENR 965
             KR+  L  ++T  +I + Y RA  +E+++  F  + + D     AA N L   LC    
Sbjct: 82   MKRKRML-NVETFCIIMRKYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKN 140

Query: 964  KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYI 785
                  +    K++  P+  TY+IL+  + +   L +A  IF EMV     P + TY  +
Sbjct: 141  VRKAQEIFDSSKDRFVPDSKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIM 200

Query: 784  IKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPKVGEFLTDTGL-LDEGP 641
            +  L    + + A  +   M            +  +  +G   ++ E   DT L +++  
Sbjct: 201  VDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRI-EDAVDTFLGMEKNG 259

Query: 640  SNFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAF 461
               D  AY                     EM  KG  P+S+T + I ++L  + ++ EAF
Sbjct: 260  VKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAF 319

Query: 460  ELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGL 281
             +F  ++     PD  T   +I+ FC    + +A+++W  M++K +  +  ++SV I+GL
Sbjct: 320  RVFRRMIKVCE-PDADTYTMMIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGL 378

Query: 280  CYNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDMLADLSSIVGEL 119
            C       A     +M++ GI P   T+ +L + L++    D+L  L   +  L
Sbjct: 379  CEEGDVSHACVMLEDMIEKGIRPSGVTFGRLRHLLIKEGREDVLEFLQQKINVL 432


>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
          Length = 1874

 Score =  154 bits (388), Expect = 2e-34
 Identities = 104/389 (26%), Positives = 170/389 (43%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1288 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1109
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 1464 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 1523

Query: 1108 LEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 929
            +  + +    A    ++++AF ++ R      T A+N L+  LC E        V + L+
Sbjct: 1524 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 1583

Query: 928  EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 749
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 1584 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 1643

Query: 748  AQKLFDHMK--------------AYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXX 611
               L D M+               +AL K GRT    E L     L E     D+  Y  
Sbjct: 1644 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRT---REALDTFDKLKEDGVAPDASFYNS 1700

Query: 610  XXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 431
                               EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 1701 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 1760

Query: 430  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAF 251
              PD++T   L++  C    V I + L   M  K    +  +Y++ +  LC N     + 
Sbjct: 1761 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 1820

Query: 250  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 164
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 1821 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 1849


>ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
            gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza
            sativa Japonica Group]
          Length = 613

 Score =  154 bits (388), Expect = 2e-34
 Identities = 104/389 (26%), Positives = 170/389 (43%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1288 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1109
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 203  NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 262

Query: 1108 LEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 929
            +  + +    A    ++++AF ++ R      T A+N L+  LC E        V + L+
Sbjct: 263  MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 322

Query: 928  EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 749
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 323  GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 382

Query: 748  AQKLFDHMK--------------AYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXX 611
               L D M+               +AL K GRT    E L     L E     D+  Y  
Sbjct: 383  VYALLDEMRKRRCPPNVVTYTILMHALGKAGRT---REALDTFDKLKEDGVAPDASFYNS 439

Query: 610  XXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 431
                               EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 440  LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 499

Query: 430  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAF 251
              PD++T   L++  C    V I + L   M  K    +  +Y++ +  LC N     + 
Sbjct: 500  CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 559

Query: 250  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 164
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 560  LFLEEMVSKGFAPKQETFDLVMEKLEKRN 588


>gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
            gi|215693326|dbj|BAG88708.1| unnamed protein product
            [Oryza sativa Japonica Group] gi|222625789|gb|EEE59921.1|
            hypothetical protein OsJ_12549 [Oryza sativa Japonica
            Group]
          Length = 554

 Score =  154 bits (388), Expect = 2e-34
 Identities = 104/389 (26%), Positives = 170/389 (43%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1288 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1109
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 144  NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 203

Query: 1108 LEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 929
            +  + +    A    ++++AF ++ R      T A+N L+  LC E        V + L+
Sbjct: 204  MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 263

Query: 928  EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 749
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 264  GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 323

Query: 748  AQKLFDHMK--------------AYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXX 611
               L D M+               +AL K GRT    E L     L E     D+  Y  
Sbjct: 324  VYALLDEMRKRRCPPNVVTYTILMHALGKAGRT---REALDTFDKLKEDGVAPDASFYNS 380

Query: 610  XXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 431
                               EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 381  LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 440

Query: 430  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAF 251
              PD++T   L++  C    V I + L   M  K    +  +Y++ +  LC N     + 
Sbjct: 441  CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 500

Query: 250  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 164
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 501  LFLEEMVSKGFAPKQETFDLVMEKLEKRN 529


>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1833

 Score =  154 bits (388), Expect = 2e-34
 Identities = 104/389 (26%), Positives = 170/389 (43%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1288 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1109
            N+W      F+W   Q  Y H  ++Y+L+V ILG  K+FD+MW L+ +    G L  L T
Sbjct: 1423 NDWVAAFGFFMWVGTQGGYCHCADSYDLMVDILGKFKQFDLMWGLINQMVEVGGLMSLMT 1482

Query: 1108 LEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 929
            +  + +    A    ++++AF ++ R      T A+N L+  LC E        V + L+
Sbjct: 1483 MTKVMRRLAGASRWTEAIDAFHKMDRFGVVKDTKAMNVLLDTLCKERSVKRARGVFQELR 1542

Query: 928  EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 749
               PP+E +++ L+H +C+   L EAL+  EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 1543 GTIPPDENSFNTLVHGWCKARMLKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQT 1602

Query: 748  AQKLFDHMK--------------AYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXX 611
               L D M+               +AL K GRT    E L     L E     D+  Y  
Sbjct: 1603 VYALLDEMRKRRCPPNVVTYTILMHALGKAGRT---REALDTFDKLKEDGVAPDASFYNS 1659

Query: 610  XXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 431
                               EM   G  P+  T++++ S  C   ++  A +L   +   S
Sbjct: 1660 LIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKMEEQS 1719

Query: 430  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAF 251
              PD++T   L++  C    V I + L   M  K    +  +Y++ +  LC N     + 
Sbjct: 1720 CNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 1779

Query: 250  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 164
             +  EMV  G  P  ET+  ++  L + N
Sbjct: 1780 LFLEEMVSKGFAPKQETFDLVMEKLEKRN 1808


>ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297334660|gb|EFH65078.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 512

 Score =  153 bits (386), Expect = 3e-34
 Identities = 107/437 (24%), Positives = 190/437 (43%), Gaps = 36/437 (8%)
 Frame = -2

Query: 1339 SGSLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMW 1160
            S  L P  +  V++ + N   L L  F WA+ Q  +KHTT  Y  ++  LG  K+F ++W
Sbjct: 91   SVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIW 150

Query: 1159 QLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVL 980
             L+++ K++  L +  T  +I + Y RA  +++++ AF ++      + ++  N ++ +L
Sbjct: 151  NLVDDMKQKKLLSK-DTFALISRRYARARKVKEAITAFHKMEDYGFKMESSDFNRMLDIL 209

Query: 979  CMENRKNDCSLVLRRLKEK------------------------------------CPPNE 908
                   D   V  ++K+K                                      P+ 
Sbjct: 210  SKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVNEVYGEMKDEGFEPDV 269

Query: 907  MTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDH 728
            + Y I+I+A+C+  K  EA+  F EM Q N +PS   +  +I  L + K+   A + F+ 
Sbjct: 270  VAYGIIINAYCKAKKYDEAVRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER 329

Query: 727  MKAYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEM 548
             K+                  +G   E P+      Y                     EM
Sbjct: 330  SKS------------------SGFPLEAPT------YNALVGAYCWSQRMEDAFKTVDEM 365

Query: 547  VKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHV 368
              KG  P+++TY  I  HL R ++++EA+E++  +   S  P + T   ++  FC+   +
Sbjct: 366  RSKGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM---SCEPTVSTYEIMVRMFCNKERL 422

Query: 367  GIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 188
             +A+++W  M+ KG       +S  I  LC+ +  ++A  YFNEM+  GI P    + +L
Sbjct: 423  DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRL 482

Query: 187  LYGLLRGNNPDMLADLS 137
               LL     D +ADL+
Sbjct: 483  KQTLLDEGRKDKVADLA 499


>ref|XP_006650574.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
            mitochondrial-like [Oryza brachyantha]
          Length = 549

 Score =  152 bits (385), Expect = 4e-34
 Identities = 104/389 (26%), Positives = 168/389 (43%), Gaps = 14/389 (3%)
 Frame = -2

Query: 1288 NEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKT 1109
            N+W      F+WA  Q  Y H  ++Y+L+V ILG +K+FD+MW L+ +    G L  L T
Sbjct: 139  NDWVAAFGFFMWAGTQGGYCHCADSYDLMVDILGKSKQFDLMWGLINQMVEVGGLVSLMT 198

Query: 1108 LEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLK 929
            +  + +    A    D+++AF R+ R      T A+N L+  LC E          + L+
Sbjct: 199  MTKVMRRLAGASRWTDAIDAFHRMDRFGVVKDTKAMNVLLDTLCKERSVKRARGAFQELR 258

Query: 928  EKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEF 749
               PP+E +++ L+H +C+   L EAL   EEM Q+   PS+ TY+ +++A    K  + 
Sbjct: 259  GTIPPDESSFNTLVHGWCKARMLKEALETMEEMNQHGFSPSVVTYTSLLEAYCMEKDFQT 318

Query: 748  AQKLFDHMK--------------AYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXX 611
               L D M                +AL K GRT    E L     L E     D+  Y  
Sbjct: 319  VYSLLDEMHKRRCPPNVITYTIVMHALGKAGRT---REALDMFDKLKEDGVAPDASFYNS 375

Query: 610  XXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATS 431
                               EM K G   +  T++++ S  C   ++  A +L   +   S
Sbjct: 376  LIYILGRAGRLEDAYSVVEEMHKTGIPSNVTTFNTLISAACDHSQAENALKLLVKMEEQS 435

Query: 430  HFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAF 251
              PD++T   L++  C    V   + L   M  K    +  +Y++ +  LC N     + 
Sbjct: 436  CKPDIKTYTPLLKLCCKKQWVKTLLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKVAQSC 495

Query: 250  FYFNEMVQNGIVPLFETYRKLLYGLLRGN 164
             +  EM+  G  P  ET+  ++  L + N
Sbjct: 496  LFLEEMISKGFTPKLETFDLVMKKLEKRN 524


>gb|EOY05751.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
            cacao]
          Length = 554

 Score =  151 bits (382), Expect = 1e-33
 Identities = 111/413 (26%), Positives = 175/413 (42%), Gaps = 21/413 (5%)
 Frame = -2

Query: 1282 WELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLE 1103
            W      F+WAK+Q  Y+HT E Y+ +V ILG AKKFD++  L+ E  +     RL T+ 
Sbjct: 145  WISAYGVFIWAKKQSGYRHTPELYDSMVDILGKAKKFDLVLDLVNEMNQLKGYIRLNTMV 204

Query: 1102 VIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLKEK 923
             + +   +AG   +++EAF+RL          ALN L+  L   +       V   LKE 
Sbjct: 205  KVIRRLAKAGRFSEAIEAFRRLEEYGIGKDVVALNGLLDALVKGDGVEHAYEVFVELKEC 264

Query: 922  CPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQ 743
             P N  +++ILIH FC+  +L +A  I  EM +   QP + +Y+  I+A    K      
Sbjct: 265  MPLNSSSFNILIHGFCKARRLDDARKILNEMEEYGCQPCVVSYTSFIEAYCHEKDFHNVD 324

Query: 742  KLFDHMKAYALRK-----------------FGRTPKVGEFLTDTGLLDEGPSNFDSKAYX 614
             + D MK    R                   G+  +V E + + G L       DS  Y 
Sbjct: 325  AVLDEMKEKGCRPNVVTYTIIMHARGKAGIIGKALEVYEKMKNDGCLP------DSSFYS 378

Query: 613  XXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVAT 434
                                +M K+G  P+  TY+++ +  C      +A +L   +   
Sbjct: 379  SLIFILSKSGRLKDADEIFEDMKKQGVRPNVLTYNTMITSACGHSLEEKALKLLQRMEED 438

Query: 433  SHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDA 254
            S  PD+ T   L++  C    + +   L   M       +  +YS+ +  LC +   E A
Sbjct: 439  SCKPDISTYGPLLKMCCRKKRMKVLNFLLSHMLNNDVSIDLATYSLLVQRLCNSGKLEQA 498

Query: 253  FFYFNEMVQNGIVPLFETYRKLLYGLLRGNN----PDMLADLSSIVGELELKG 107
              +F EMV  G++P  ++ RK L   L   N     + + +L S + EL   G
Sbjct: 499  CAFFEEMVLKGMIPK-DSIRKTLVEKLEKENMAKAKEQIQELMSNLKELVKTG 550


>ref|XP_006849933.1| hypothetical protein AMTR_s00022p00121040 [Amborella trichopoda]
            gi|548853531|gb|ERN11514.1| hypothetical protein
            AMTR_s00022p00121040 [Amborella trichopoda]
          Length = 438

 Score =  150 bits (380), Expect = 2e-33
 Identities = 96/403 (23%), Positives = 181/403 (44%), Gaps = 11/403 (2%)
 Frame = -2

Query: 1324 PEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEE 1145
            P+ V  +++   N      R F W  +Q+NY H+ ++Y +++  L   +++ +MW L+ +
Sbjct: 21   PDLVEDILKRFENAGMQAYRFFQWVDKQINYSHSVKSYHIMIGSLAKIRQYQLMWDLVND 80

Query: 1144 FKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENR 965
             +R+  L   +T  ++ + Y RA  +++++  F  + +   +    A NSL+   C    
Sbjct: 81   MRRKDILNN-ETFCIMIRKYARAHKVDEAVYTFNVMDKFGLTPNLTAFNSLLSAFCKAKN 139

Query: 964  KNDCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYI 785
                  +   +K++  PN +TYSIL+  + +   L +A  IF EM+  N +P + TY  +
Sbjct: 140  VRKAQEIFDDMKDRFEPNSITYSILLEGWGKEPNLPKAREIFLEMIDKNCEPDIVTYGIM 199

Query: 784  IKALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPKVGEFLTDTGLLDEGPS 638
            I +L    + E A      M+           +  +  +G    +G+ +     +++   
Sbjct: 200  IDSLCKAGRVEEATGYMKEMRSRGCIPTSYIYSILIHTYGVERSIGDAVDSFLEMEKDGI 259

Query: 637  NFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFE 458
              D  AY                     EM KK   P+S+T + I + L    ++ EAF 
Sbjct: 260  KADVAAYNALISAFCRAKKFKNVYRVLEEMDKKSVAPNSRTCNIILNGLIGSGETDEAFR 319

Query: 457  LFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLC 278
            +F  ++     PD  T   +I+ FC    +  AM++W  M  K +  +  ++SV I+GLC
Sbjct: 320  IFKSMIKHCE-PDSDTYTMMIKMFCEIDKLEKAMKVWKYMGLKQFVPSMHTFSVLINGLC 378

Query: 277  YNSLFEDAFFYFNEMVQNGIVPLFETYRKLLYGLLRGNNPDML 149
                   A     +M++ GI P   T+R++   LL+    D+L
Sbjct: 379  RKGELNKACILLEDMIEKGIRPPDLTFRRVRQLLLKEGRKDVL 421


>ref|NP_177262.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75169669|sp|Q9C9A2.1|PP112_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At1g71060, mitochondrial; Flags: Precursor
            gi|12323433|gb|AAG51696.1|AC016972_15 hypothetical
            protein; 31939-30407 [Arabidopsis thaliana]
            gi|332197036|gb|AEE35157.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 510

 Score =  150 bits (379), Expect = 2e-33
 Identities = 107/436 (24%), Positives = 186/436 (42%), Gaps = 36/436 (8%)
 Frame = -2

Query: 1339 SGSLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMW 1160
            S  L P  +  V++ + N   L L  F WA+ Q  +KHTT  Y  ++  LG  K+F ++W
Sbjct: 89   SVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIW 148

Query: 1159 QLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVL 980
             L+++ K +  L + +T  +I + Y RA  +++++ AF ++      + ++  N ++  L
Sbjct: 149  SLVDDMKAKKLLSK-ETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTL 207

Query: 979  CMENRKNDCSLVLRRLKEK------------------------------------CPPNE 908
                   D   V  ++K+K                                      P+ 
Sbjct: 208  SKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDV 267

Query: 907  MTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDH 728
            + Y I+I+A C+  K  EA+  F EM Q N +PS   +  +I  L + K+   A + F+ 
Sbjct: 268  VAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER 327

Query: 727  MKAYALRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEM 548
             K+                  +G   E P+      Y                     EM
Sbjct: 328  SKS------------------SGFPLEAPT------YNALVGAYCWSQRMEDAYKTVDEM 363

Query: 547  VKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHV 368
              KG  P+++TY  I  HL R ++S+EA+E++  +   S  P + T   ++  FC+   +
Sbjct: 364  RLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERL 420

Query: 367  GIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRKL 188
             +A+++W  M+ KG       +S  I  LC+ +  ++A  YFNEM+  GI P    + +L
Sbjct: 421  DMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHMFSRL 480

Query: 187  LYGLLRGNNPDMLADL 140
               LL     D + DL
Sbjct: 481  KQTLLDEGRKDKVTDL 496


>ref|XP_004956188.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
            mitochondrial-like [Setaria italica]
          Length = 557

 Score =  150 bits (378), Expect = 3e-33
 Identities = 105/438 (23%), Positives = 195/438 (44%), Gaps = 19/438 (4%)
 Frame = -2

Query: 1393 AAEKGISVHLPEFVPQIKSG------SLRPEFVMSVMELVLNEWELGLRTFLWAKQQLNY 1232
            AAE+   V   +  P++ S       ++ PE V  V++ + N   L L  F WA++Q  +
Sbjct: 108  AAERVCRVVSTQPEPRVASALDALGVAVSPELVAEVLKNLSNAGVLALAFFRWAERQEGF 167

Query: 1231 KHTTEAYELIVHILGNAKKFDIMWQLLEEFKREGFLFRLKTLEVIFQSYVRAGSIEDSME 1052
            ++T +++  ++  LG  K+F ++W L+E  +    L +  T ++I + Y RA  +++++E
Sbjct: 168  RYTADSFHNLIEALGKIKQFRLVWSLVETMRCRCLLSK-DTFKLIVRRYARARKVKEAVE 226

Query: 1051 AFKRLCRLDDSVGTAALNSLIRVLCMENRKNDCSLVLRRLKEKCP--PNEMTYSILIHAF 878
             F+++         +  N LI  L    +      + + +K K    P+  TY++L+  +
Sbjct: 227  TFEKMGSFGLKTELSDYNWLIDALSKSKQVKKGHAIYKEMKRKAKFVPDLKTYTVLMEGW 286

Query: 877  CEGNKLSEALNIFEEMVQNNIQPSLATYSYIIKALSANKQTEFAQKLFDHMKAYA----- 713
                 L     +++EM+   I+P +  Y  +I A   + + + A K+F  M+  A     
Sbjct: 287  GHEKDLLMVRTVYQEMLDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFHEMEVSACMPSP 346

Query: 712  ------LRKFGRTPKVGEFLTDTGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXE 551
                  +   G   ++ E L    L  E     +                         E
Sbjct: 347  HVYCMLINGLGSEERLDEALKYFQLYKESGFPMEVPTCNAVVGAYCRASKFQHAFKMVDE 406

Query: 550  MVKKGFTPSSKTYSSIFSHLCRKRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGH 371
            M K    P+S+TY  I  HL + +K  EA+++F  +      P L T   ++  FCS   
Sbjct: 407  MRKCKIGPNSRTYDIILHHLIKSQKFEEAYDVFQKMGMDGCEPQLNTYTMMVGMFCSNER 466

Query: 370  VGIAMELWYMMQEKGYGCNRESYSVFIHGLCYNSLFEDAFFYFNEMVQNGIVPLFETYRK 191
            V +A+++W  M+EKG       +S  I+GLC+ +  E+A  YF EM+  GI P  + +  
Sbjct: 467  VDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDKGIRPPGQLFSN 526

Query: 190  LLYGLLRGNNPDMLADLS 137
            L   L+ G    +  +++
Sbjct: 527  LKEALVEGGRISLAQEMA 544


>ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355512090|gb|AES93713.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  149 bits (377), Expect = 4e-33
 Identities = 104/389 (26%), Positives = 180/389 (46%), Gaps = 12/389 (3%)
 Frame = -2

Query: 1315 VMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLLEEFKR 1136
            VM V++   N+W      F+WAK+Q  Y H+ E Y L+V ILG AK+FD+MW+L++E KR
Sbjct: 180  VMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMKR 239

Query: 1135 -EGFLFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVLCMENRKN 959
             EG++  L T+  + + + +A   ED++EAF+ + +      TAALN L+  L       
Sbjct: 240  IEGYVC-LDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEKDTAALNKLLDALVKGQSIE 298

Query: 958  DCSLVLRRLKEKCPPNEMTYSILIHAFCEGNKLSEALNIFEEMVQNNIQPSLATYSYIIK 779
                VL   K   P +  +++ILI+ +C+     +A  + EE  ++  +P + TY+  I+
Sbjct: 299  IAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVMEERKEHGFEPDVFTYNNFIE 358

Query: 778  ALSANKQTEFAQKLFDHMK-----------AYALRKFGRTPKVGEFLTDTGLLDEGPSNF 632
            +   +K      ++ + M+              L  +G+  ++ + L +   + +     
Sbjct: 359  SYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAGQLSKALEEYERMKKDGIVP 418

Query: 631  DSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCRKRKSREAFELF 452
            D+  Y                     +M K+G      TY+++ S  C   K   A  L 
Sbjct: 419  DTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYNTMISTACAHSKEETALRLL 478

Query: 451  NIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRESYSVFIHGLCYN 272
              +  TS  PDLQT + L++  C    + +   L   M +     +R +Y++ +  L  +
Sbjct: 479  KEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKHDLCPDRGTYTLLVQSLSNS 538

Query: 271  SLFEDAFFYFNEMVQNGIVPLFETYRKLL 185
                +A  +F EMV  G  P+ ET  KLL
Sbjct: 539  GKLVEACTFFEEMVSKGFTPM-ETTVKLL 566


>ref|XP_003548477.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
            mitochondrial-like [Glycine max]
          Length = 612

 Score =  149 bits (376), Expect = 5e-33
 Identities = 109/391 (27%), Positives = 172/391 (43%), Gaps = 18/391 (4%)
 Frame = -2

Query: 1330 LRPEFVMSVMELVLNEWELGLRTFLWAKQQLNYKHTTEAYELIVHILGNAKKFDIMWQLL 1151
            L PE V+ V+    N+WE     FLWA +Q  Y H+   Y  ++ ILG  +KFD  W L+
Sbjct: 156  LSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLI 215

Query: 1150 EEFK--REGF-LFRLKTLEVIFQSYVRAGSIEDSMEAFKRLCRLDDSVGTAALNSLIRVL 980
            EE +  R G  L   +TL ++ + Y     +  ++  F    R +  VG    +SL+  L
Sbjct: 216  EEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSAL 275

Query: 979  CMENRKNDCSLVLRRLKEKCPPNEMTYSILIHAFCE-GNKLSEALNIFEEMVQNNIQPSL 803
            C      D   +L   K+  P +  +++I+++ +C      S A  I+ EM++  IQ  +
Sbjct: 276  CRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDV 335

Query: 802  ATYSYIIKALSANKQTEFAQKLFDHMK--------------AYALRKFGRTPKVGEFLTD 665
             +Y  II   S + +     ++FD MK               YAL K GR  K  E +  
Sbjct: 336  VSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAK-GRLVK--EAVNL 392

Query: 664  TGLLDEGPSNFDSKAYXXXXXXXXXXXXXXXXXXXXXEMVKKGFTPSSKTYSSIFSHLCR 485
             G ++      D   Y                     EM+K+  +P+ +T+ + F  L  
Sbjct: 393  IGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRIL-- 450

Query: 484  KRKSREAFELFNIVVATSHFPDLQTLNTLIETFCSTGHVGIAMELWYMMQEKGYGCNRES 305
             R   E FEL + +     +P ++T   LI  FC    +    ++W  M+E     +R S
Sbjct: 451  -RTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSS 509

Query: 304  YSVFIHGLCYNSLFEDAFFYFNEMVQNGIVP 212
            Y V IHGL  N   E+A  Y+ EM + G +P
Sbjct: 510  YIVLIHGLFLNGKLEEAQRYYAEMQEKGFLP 540