BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00012577
         (1256 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK25332.1| unknown [Picea sitchensis]                             107   8e-21
gb|EOY27958.1| Rho termination factor, putative isoform 2 [Theob...    66   3e-08
gb|EOY27957.1| Rho termination factor, putative isoform 1 [Theob...    66   3e-08
ref|XP_006833047.1| hypothetical protein AMTR_s00170p00016030 [A...    60   1e-06
gb|EXB84045.1| hypothetical protein L484_005809 [Morus notabilis]      58   9e-06

>gb|ABK25332.1| unknown [Picea sitchensis]
          Length = 432

 Score =  107 bits (268), Expect = 8e-21
 Identities = 102/345 (29%), Positives = 153/345 (44%), Gaps = 34/345 (9%)
 Frame = +3

Query: 216  LSVPHIVHFAIGNASLSLQKISNSRRKFPVSALPVKESESHSQRQSRADNRNKTVRKKKS 395
            LS  H  H A+ N S   +  SN +R+ P+    VK+     + + + +   + V+    
Sbjct: 75   LSSSHAEHMALSNISFPRRMPSNFKRQSPIPISAVKKEGRRIRNRKQENTGAEKVQDNFD 134

Query: 396  LEHV--QNAGKVYXXXXXXXXXXXXXXXXXXXXXXXXXXGNHSETENPPNSSSIEDFKAL 569
             E+V  +     +                          G++ +     NSS  +D  AL
Sbjct: 135  SENVTGETDNVNHSKIGYRLSQRSPSTYARRSPMSSPDDGSNPDMNKSSNSSVEDDIVAL 194

Query: 570  FWRIQEDSNV-QENLGRKLKDNSTSSINSNVKTEDASCLPKHKEP--------------- 701
            F RIQ +S V +EN G   K+++ SS   ++K+ D+      + P               
Sbjct: 195  FRRIQAESTVSKENPGNNKKNSNISS--KSMKSADSVLRVLRQYPDKPKEEIEEETNQKI 252

Query: 702  -VMNILHKFDDRIKHGNKDQNTGKN-------------GKASRKGSFSREWVNKNSKRPD 839
             +M    K   +I    K     K               K + K   SR    K+  +  
Sbjct: 253  SLMGGYEKMATQIDSSRKQSKKSKEIEEEPNISLMAGYEKMATKRDSSRRQSKKSESQRI 312

Query: 840  ICSTDFSQQ-TISRPPSEFVRKSPIPLSAIKKLVRPVPGLKETEDMKQNMLTS-SSDVKL 1013
              + D S+   +SRP S+FV KSPIPLSAIKK VRPVPG++++++  QN  TS  S+   
Sbjct: 313  TKNMDKSEDFLLSRPTSKFVHKSPIPLSAIKKEVRPVPGIQQSDE--QNGGTSRDSEGTS 370

Query: 1014 PSSDNGSFLKHSPSSSEFQFDDLGKYKLSELREYAKSHGLKGYSR 1148
             S  NGS L+ S    E Q DDL +  LSEL++ AKS+GLKGYS+
Sbjct: 371  ASVLNGSLLRDSAGLLEDQPDDLSQLNLSELKKTAKSYGLKGYSK 415


>gb|EOY27958.1| Rho termination factor, putative isoform 2 [Theobroma cacao]
          Length = 257

 Score = 66.2 bits (160), Expect = 3e-08
 Identities = 58/205 (28%), Positives = 93/205 (45%)
 Frame = +3

Query: 534  PNSSSIEDFKALFWRIQEDSNVQENLGRKLKDNSTSSINSNVKTEDASCLPKHKEPVMNI 713
            PNSS+ ED  ALF RIQ   +  E    K K  S+S   S              E V+++
Sbjct: 88   PNSSNQEDIIALFRRIQSSISKGETGSAKAKSLSSSKDKSTA------------ESVLDV 135

Query: 714  LHKFDDRIKHGNKDQNTGKNGKASRKGSFSREWVNKNSKRPDICSTDFSQQTISRPPSEF 893
            L +    ++       + K GKASR  S   + +    K+ +  + DF    + RPPS F
Sbjct: 136  LRESRKNVR----GIRSNKGGKASRWKSGVPKKIEGMGKKANAATQDFK---LLRPPSNF 188

Query: 894  VRKSPIPLSAIKKLVRPVPGLKETEDMKQNMLTSSSDVKLPSSDNGSFLKHSPSSSEFQF 1073
            V++SP+P     +    V GL++  ++    + ++  +KL + +                
Sbjct: 189  VKRSPVPYPTAPR----VKGLEQNNEV----VATNEGLKLANIE---------------- 224

Query: 1074 DDLGKYKLSELREYAKSHGLKGYSR 1148
                K KL+EL++ AK+ G+KGYSR
Sbjct: 225  ----KLKLTELKDLAKARGIKGYSR 245


>gb|EOY27957.1| Rho termination factor, putative isoform 1 [Theobroma cacao]
          Length = 345

 Score = 66.2 bits (160), Expect = 3e-08
 Identities = 58/205 (28%), Positives = 93/205 (45%)
 Frame = +3

Query: 534  PNSSSIEDFKALFWRIQEDSNVQENLGRKLKDNSTSSINSNVKTEDASCLPKHKEPVMNI 713
            PNSS+ ED  ALF RIQ   +  E    K K  S+S   S              E V+++
Sbjct: 176  PNSSNQEDIIALFRRIQSSISKGETGSAKAKSLSSSKDKSTA------------ESVLDV 223

Query: 714  LHKFDDRIKHGNKDQNTGKNGKASRKGSFSREWVNKNSKRPDICSTDFSQQTISRPPSEF 893
            L +    ++       + K GKASR  S   + +    K+ +  + DF    + RPPS F
Sbjct: 224  LRESRKNVR----GIRSNKGGKASRWKSGVPKKIEGMGKKANAATQDFK---LLRPPSNF 276

Query: 894  VRKSPIPLSAIKKLVRPVPGLKETEDMKQNMLTSSSDVKLPSSDNGSFLKHSPSSSEFQF 1073
            V++SP+P     +    V GL++  ++    + ++  +KL + +                
Sbjct: 277  VKRSPVPYPTAPR----VKGLEQNNEV----VATNEGLKLANIE---------------- 312

Query: 1074 DDLGKYKLSELREYAKSHGLKGYSR 1148
                K KL+EL++ AK+ G+KGYSR
Sbjct: 313  ----KLKLTELKDLAKARGIKGYSR 333


>ref|XP_006833047.1| hypothetical protein AMTR_s00170p00016030 [Amborella trichopoda]
            gi|548837640|gb|ERM98325.1| hypothetical protein
            AMTR_s00170p00016030 [Amborella trichopoda]
          Length = 234

 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 59/204 (28%), Positives = 91/204 (44%)
 Frame = +3

Query: 537  NSSSIEDFKALFWRIQEDSNVQENLGRKLKDNSTSSINSNVKTEDASCLPKHKEPVMNIL 716
            +SSS E+  ALF RIQ            +   S  S N ++   D S + +  + V++ L
Sbjct: 59   DSSSQEEIIALFRRIQSS----------ISKGSPRSTNKSIT--DDSKIKQSADSVLHAL 106

Query: 717  HKFDDRIKHGNKDQNTGKNGKASRKGSFSREWVNKNSKRPDICSTDFSQQTISRPPSEFV 896
             ++  R    NK+  +G+      +G+  R  +NK+ K  +  +  F    +SRP S FV
Sbjct: 107  RQYPARKL--NKEATSGQGKDVRGRGALRRGSLNKDQKDEEPKTDHFK---LSRPASNFV 161

Query: 897  RKSPIPLSAIKKLVRPVPGLKETEDMKQNMLTSSSDVKLPSSDNGSFLKHSPSSSEFQFD 1076
            ++SPIP S  ++ V     L        N LTS +                        D
Sbjct: 162  KRSPIPSSLPREKVDE-KALASGAKTVDNALTSKT-----------------------MD 197

Query: 1077 DLGKYKLSELREYAKSHGLKGYSR 1148
            D+   KL ELR+ A+SHG+KGYS+
Sbjct: 198  DM---KLMELRKLARSHGMKGYSK 218


>gb|EXB84045.1| hypothetical protein L484_005809 [Morus notabilis]
          Length = 258

 Score = 57.8 bits (138), Expect = 9e-06
 Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 5/210 (2%)
 Frame = +3

Query: 534  PNSSSIEDFKALFWRIQEDSNVQENLGRKLKDNSTSSINSNVKTEDASCLPKHKEPVMNI 713
            PNS++ E+  ALF RIQ   + ++++  K        IN++   E +S      E ++ +
Sbjct: 88   PNSANQEEIIALFRRIQSSISKEKSVNDK-------KINADASEEKSSV-----ESILKV 135

Query: 714  LHKFDDRIKHGNKDQNTGKNGKAS----RKGSFSREWVNKNSKRPDICSTDFSQQTISR- 878
            L +             +GK GKA     +K S  +  V K  +  +  +   +   +SR 
Sbjct: 136  LRR-------------SGKQGKAKIEEGKKISMRKRVVPKKDQELEGSTPAVTGSKLSRR 182

Query: 879  PPSEFVRKSPIPLSAIKKLVRPVPGLKETEDMKQNMLTSSSDVKLPSSDNGSFLKHSPSS 1058
            PPS FV++SPIP   I + +        + ++     T++ +  L          H P  
Sbjct: 183  PPSNFVKRSPIPSPTIPRSI--------SLELNSKQSTAAEEEGL----------HLPKV 224

Query: 1059 SEFQFDDLGKYKLSELREYAKSHGLKGYSR 1148
             E         KL+EL+E AKS G+KGYSR
Sbjct: 225  EEM--------KLAELKELAKSRGIKGYSR 246