BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00012478
         (1342 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE76416.1| unknown [Picea sitchensis]                             301   1e-95
dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japo...   250   2e-79
gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indi...   250   2e-79
ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago trun...   255   4e-78
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   252   7e-78
ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   252   7e-78
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           252   7e-78
ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [A...   250   7e-78
gb|EMT12212.1| Protein kinase APK1B, chloroplastic [Aegilops tau...   251   1e-77
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              245   1e-77
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   245   3e-77
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   245   3e-77
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   252   6e-77
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   242   8e-77
gb|AFK45334.1| unknown [Medicago truncatula]                          250   1e-76
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     248   2e-76
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   255   2e-76
ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citr...   255   2e-76
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        248   2e-76
ref|XP_006656336.1| PREDICTED: tRNA pseudouridine synthase A, mi...   240   2e-76

>gb|ADE76416.1| unknown [Picea sitchensis]
          Length = 448

 Score =  301 bits (771), Expect(2) = 1e-95
 Identities = 160/274 (58%), Positives = 193/274 (70%), Gaps = 21/274 (7%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            EAA++VAGRTDKGVSA  QVCSFYTWRKD +  ++E+EINA A   LKV S+ EV REFH
Sbjct: 177  EAAVAVAGRTDKGVSAFQQVCSFYTWRKDTSLEDIESEINAAALGKLKVVSISEVSREFH 236

Query: 906  PNFSAKWRRYLYILPLHEGEG-------------DGMCKSTK--------DILEMEKVSA 790
            PNFSAKWRRYLYILPL +GEG             D +C + +        +++ ME ++ 
Sbjct: 237  PNFSAKWRRYLYILPLKDGEGNKTVVDGGSPVTYDSLCLADEGGNQSTDMNVINMEAMNI 296

Query: 789  TAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARA 610
            +A  +++   KP+NF+V  VNQ LQQLEG+ LSY+IFARDTQASRS GPATEC ++HARA
Sbjct: 297  SATGKHQASVKPHNFNVDTVNQLLQQLEGQSLSYRIFARDTQASRSRGPATECFMHHARA 356

Query: 609  AVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEA 430
            AVATLP +G+D   + + VMCVELVANRFLRKM               A P+  L LM A
Sbjct: 357  AVATLPYMGQDHTSKGRTVMCVELVANRFLRKMVRVLVATAVREAAAGATPDNLLKLMHA 416

Query: 429  TCRRASAPPAPPDGLCLVDVGYEDINNENSIFLI 328
            TCRRASAPPAPP+GLCLVD+GY DIN EN  FLI
Sbjct: 417  TCRRASAPPAPPEGLCLVDIGYTDINQEN--FLI 448



 Score = 77.8 bits (190), Expect(2) = 1e-95
 Identities = 33/41 (80%), Positives = 38/41 (92%)
 Frame = -1

Query: 1267 KKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KK +GGKW RRTFKI+LSYDG+ FDGWQKQPG+NTVQGL+E
Sbjct: 114  KKPKGGKWARRTFKIVLSYDGNLFDGWQKQPGMNTVQGLVE 154


>dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
          Length = 495

 Score =  250 bits (638), Expect(2) = 2e-79
 Identities = 134/247 (54%), Positives = 164/247 (66%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L+   V +V REFH
Sbjct: 174  EGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFH 233

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEKVSATAESEYKQLNKPYNFDVALVN 727
            PNF+AKWRRYLYI PL E          K I   E+ + T E     + KP +FDV  V+
Sbjct: 234  PNFAAKWRRYLYIFPLDE--------DVKLISGEEQSAKTVEGPECNI-KPQSFDVGKVD 284

Query: 726  QFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKDDGHRTKNVMC 547
            + ++QLEG+ LSYK+FARDTQASRS GP TEC ++H+RAAVA L    ++    T   +C
Sbjct: 285  KIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAIC 344

Query: 546  VELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVG 367
            +ELVANRFLRKM               A+ +  LNLMEATCRRA+APPAPPDGLCLVDVG
Sbjct: 345  IELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVG 404

Query: 366  YEDINNE 346
            YED N +
Sbjct: 405  YEDFNRQ 411



 Score = 74.3 bits (181), Expect(2) = 2e-79
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDRGG+W+R TFKI+LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 112  KDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVE 151


>gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group]
            gi|125598125|gb|EAZ37905.1| hypothetical protein
            OsJ_22255 [Oryza sativa Japonica Group]
          Length = 417

 Score =  250 bits (638), Expect(2) = 2e-79
 Identities = 134/247 (54%), Positives = 164/247 (66%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN  A + L+   V +V REFH
Sbjct: 174  EGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDIKDAINKAAPDKLRPLHVSQVSREFH 233

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEKVSATAESEYKQLNKPYNFDVALVN 727
            PNF+AKWRRYLYI PL E          K I   E+ + T E     + KP +FDV  V+
Sbjct: 234  PNFAAKWRRYLYIFPLDE--------DVKLISGEEQSAKTVEGPECNI-KPQSFDVGKVD 284

Query: 726  QFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKDDGHRTKNVMC 547
            + ++QLEG+ LSYK+FARDTQASRS GP TEC ++H+RAAVA L    ++    T   +C
Sbjct: 285  KIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAIC 344

Query: 546  VELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVG 367
            +ELVANRFLRKM               A+ +  LNLMEATCRRA+APPAPPDGLCLVDVG
Sbjct: 345  IELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVG 404

Query: 366  YEDINNE 346
            YED N +
Sbjct: 405  YEDFNRQ 411



 Score = 74.3 bits (181), Expect(2) = 2e-79
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDRGG+W+R TFKI+LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 112  KDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVE 151


>ref|XP_003630601.1| tRNA pseudouridine synthase A [Medicago truncatula]
            gi|355524623|gb|AET05077.1| tRNA pseudouridine synthase A
            [Medicago truncatula]
          Length = 400

 Score =  255 bits (651), Expect(2) = 4e-78
 Identities = 135/256 (52%), Positives = 169/256 (66%), Gaps = 4/256 (1%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            +   +VAGRTDKGV+AL QVCSFYTW+KD+   E+E  IN  A   L+V SVYEV R FH
Sbjct: 146  QGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFH 205

Query: 906  PNFSAKWRRYLYILPLHEG----EGDGMCKSTKDILEMEKVSATAESEYKQLNKPYNFDV 739
            PNFSAKWRRYLYI PL +G    +  G  +S    +  E   + ++ E ++ NK Y F V
Sbjct: 206  PNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNEICDSDSKDELEKENKSYVFGV 265

Query: 738  ALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKDDGHRTK 559
              VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC ++HARA  A LP    ++G  T+
Sbjct: 266  RKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKLPI--TENGEETR 323

Query: 558  NVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCL 379
             VMC+ELVANRFLRKM               A+ +  L LM+ATCRRA+APPAPPDGLCL
Sbjct: 324  -VMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLCL 382

Query: 378  VDVGYEDINNENSIFL 331
            VDVGY +   E    +
Sbjct: 383  VDVGYAEFEREKCFIM 398



 Score = 65.1 bits (157), Expect(2) = 4e-78
 Identities = 29/40 (72%), Positives = 31/40 (77%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDR GKW R  FKILLSY G  FDGWQKQP LNTVQ ++E
Sbjct: 84   KDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVE 123


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  252 bits (643), Expect(2) = 7e-78
 Identities = 141/272 (51%), Positives = 166/272 (61%), Gaps = 22/272 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   ++V S+ EV R FH
Sbjct: 187  EGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFH 246

Query: 906  PNFSAKWRRYLYILPLHEG------EGDG----------------MCKSTKDILEMEKVS 793
            PNFSAKWRRYLYI PL++G      EG+G                 C        +E   
Sbjct: 247  PNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSI 306

Query: 792  ATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHAR 613
             + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+ GP TEC +YHAR
Sbjct: 307  ISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHAR 366

Query: 612  AAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLME 433
            A    LP    + G R   VMCVEL+ANRFLRKM               A  +  L LM+
Sbjct: 367  ATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMD 423

Query: 432  ATCRRASAPPAPPDGLCLVDVGYEDINNENSI 337
            ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 424  ATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 455



 Score = 67.4 bits (163), Expect(2) = 7e-78
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -1

Query: 1261 DRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            D+ G+W R TFKI+LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 126  DKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVE 164


>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  252 bits (643), Expect(2) = 7e-78
 Identities = 141/272 (51%), Positives = 166/272 (61%), Gaps = 22/272 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   ++V S+ EV R FH
Sbjct: 178  EGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFH 237

Query: 906  PNFSAKWRRYLYILPLHEG------EGDG----------------MCKSTKDILEMEKVS 793
            PNFSAKWRRYLYI PL++G      EG+G                 C        +E   
Sbjct: 238  PNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSI 297

Query: 792  ATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHAR 613
             + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+ GP TEC +YHAR
Sbjct: 298  ISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHAR 357

Query: 612  AAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLME 433
            A    LP    + G R   VMCVEL+ANRFLRKM               A  +  L LM+
Sbjct: 358  ATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMD 414

Query: 432  ATCRRASAPPAPPDGLCLVDVGYEDINNENSI 337
            ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 415  ATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 446



 Score = 67.4 bits (163), Expect(2) = 7e-78
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -1

Query: 1261 DRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            D+ G+W R TFKI+LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 117  DKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVE 155


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  252 bits (643), Expect(2) = 7e-78
 Identities = 141/272 (51%), Positives = 166/272 (61%), Gaps = 22/272 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E   SVAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN +A   ++V S+ EV R FH
Sbjct: 158  EGCASVAGRTDKGVSALQQVCSFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFH 217

Query: 906  PNFSAKWRRYLYILPLHEG------EGDG----------------MCKSTKDILEMEKVS 793
            PNFSAKWRRYLYI PL++G      EG+G                 C        +E   
Sbjct: 218  PNFSAKWRRYLYIFPLNDGENREEIEGEGGIENFSSHENCEKQRNECGELASEENVENSI 277

Query: 792  ATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHAR 613
             + E E +   KP +F V  VNQ LQQLEG+ LSYK+FARDT+ASR+ GP TEC +YHAR
Sbjct: 278  ISDEDELQGAKKPRSFSVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHAR 337

Query: 612  AAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLME 433
            A    LP    + G R   VMCVEL+ANRFLRKM               A  +  L LM+
Sbjct: 338  ATETRLPSPDHEKGIR---VMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMD 394

Query: 432  ATCRRASAPPAPPDGLCLVDVGYEDINNENSI 337
            ATCRRA+APPAPPDGLCLVDVGY + +  N +
Sbjct: 395  ATCRRATAPPAPPDGLCLVDVGYTEFDPRNCL 426



 Score = 67.4 bits (163), Expect(2) = 7e-78
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = -1

Query: 1261 DRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            D+ G+W R TFKI+LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 97   DKSGRWARVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVE 135


>ref|XP_006850975.1| hypothetical protein AMTR_s00025p00208060 [Amborella trichopoda]
            gi|548854646|gb|ERN12556.1| hypothetical protein
            AMTR_s00025p00208060 [Amborella trichopoda]
          Length = 371

 Score =  250 bits (639), Expect(2) = 7e-78
 Identities = 138/266 (51%), Positives = 165/266 (62%), Gaps = 17/266 (6%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E   +VAGRTDKGVSAL QVCSFYTWR DV   E+E  IN +A   L+   V EV R FH
Sbjct: 104  EGCATVAGRTDKGVSALQQVCSFYTWRTDVKTQEIEHAINTVAPGQLRAVYVSEVSRAFH 163

Query: 906  PNFSAKWRRYLYILPLH--------EGEGDGMCKSTKDILEMEK---------VSATAES 778
            PNFSAKWR YLYI PL         E  G G  +      E ++          S   + 
Sbjct: 164  PNFSAKWRHYLYIFPLKVEEESLGLENIGGGFIQCNNHDEERKEWVENGLENGCSIMVDE 223

Query: 777  EYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVAT 598
            +Y + +KP  F V+ V++ L+QLEGR LSYK+FARDT++SR+ GP TEC +YHARAA   
Sbjct: 224  DYLERSKPMRFSVSKVDRILRQLEGRLLSYKMFARDTKSSRNEGPPTECFLYHARAAETR 283

Query: 597  LPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRR 418
            LPC  + DG+    VMCVELVANRFLRKM               A  ++ L LM+ATCRR
Sbjct: 284  LPCPDEVDGNGL-GVMCVELVANRFLRKMVRVLVATSIREAAAGAGDDVLLRLMDATCRR 342

Query: 417  ASAPPAPPDGLCLVDVGYEDINNENS 340
            A+APPAPPDGLCLVDVGYED    N+
Sbjct: 343  ATAPPAPPDGLCLVDVGYEDFKPGNT 368



 Score = 68.9 bits (167), Expect(2) = 7e-78
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = -1

Query: 1267 KKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            K  RGG+W RRTFKI++SY GS FDGWQKQPGL TVQG +E
Sbjct: 41   KDSRGGRWARRTFKIVVSYHGSSFDGWQKQPGLRTVQGSVE 81


>gb|EMT12212.1| Protein kinase APK1B, chloroplastic [Aegilops tauschii]
          Length = 914

 Score =  251 bits (642), Expect(2) = 1e-77
 Identities = 142/254 (55%), Positives = 171/254 (67%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E   +VAGRTDKGV+AL QVCSFYTWRKDV   +++  IN  A + +K   V EV REFH
Sbjct: 673  EGCATVAGRTDKGVTALQQVCSFYTWRKDVQPGDIKDTINEAAPDKIKSLVVSEVSREFH 732

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEKVSATAESEYKQLNKPYNFDVALVN 727
            PNFSAKWRRYLYI PL   +GD        I E E+ S   E+   +L  P +FDVA V+
Sbjct: 733  PNFSAKWRRYLYIFPL---DGD-----ATSISEDEQSSTILEN--PELKAPQSFDVAKVD 782

Query: 726  QFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKDDGHRTKNVMC 547
            + ++QLEG+ LSYKIFARDTQASRS GPATEC +YH+RAAV  L    ++    T  VMC
Sbjct: 783  KIIRQLEGKMLSYKIFARDTQASRSDGPATECFMYHSRAAVTKLYSADENCKEGT-TVMC 841

Query: 546  VELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVG 367
            VELVANRFLRKM               AD +  LNLM+ATCRRA+APPAP +GLCLVDVG
Sbjct: 842  VELVANRFLRKMVRVLVATTIREAAAGADEDALLNLMDATCRRATAPPAPAEGLCLVDVG 901

Query: 366  YEDINNENSIFLIN 325
            YED  +E   F+++
Sbjct: 902  YEDF-DEQRCFIVD 914



 Score = 67.4 bits (163), Expect(2) = 1e-77
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            K RGG+W+R  FKI+LSY G  FDGWQKQP LNTVQGL+E
Sbjct: 611  KARGGRWERANFKIVLSYHGGSFDGWQKQPDLNTVQGLVE 650


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  245 bits (625), Expect(2) = 1e-77
 Identities = 131/245 (53%), Positives = 169/245 (68%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E  ++VAGRTDKGV+AL QVCSFYTW+KDV   ++E  IN  A   L+V SV EV R FH
Sbjct: 161  EGMVTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFH 220

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEKVSATAESEYKQLNKPYNFDVALVN 727
            PNFSAKWR Y YI PL++G+ DG  + +++ ++++K+S       +   KP  F ++ V+
Sbjct: 221  PNFSAKWRHYFYIFPLNDGD-DGE-QISENEMDIQKISFN-----ENRKKPSTFSISRVD 273

Query: 726  QFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKDDGHRTKNVMC 547
            Q L+QLEG+ LSYKIFARDT+ASR+ GP TEC ++HARA  A L     DDG  TK VMC
Sbjct: 274  QLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQF--SDDGEGTK-VMC 330

Query: 546  VELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCLVDVG 367
            +ELVANRFLRKM               A+ +  L LM+ATCRRA+APPAPPDGLCL+DVG
Sbjct: 331  IELVANRFLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVG 390

Query: 366  YEDIN 352
            + + +
Sbjct: 391  FTEFD 395



 Score = 73.6 bits (179), Expect(2) = 1e-77
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDRGG+W R TFKI+LSY G+ FDGWQKQPGLNTVQGL+E
Sbjct: 99   KDRGGRWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVE 138


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  245 bits (625), Expect(2) = 3e-77
 Identities = 136/277 (49%), Positives = 172/277 (62%), Gaps = 23/277 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWR DV   ++E  IN+ A   L+ +SV +V R FH
Sbjct: 171  EGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFH 230

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEK-----------------------V 796
            PNFSAKWRRYLYILPL++GE      +T + +E  +                       V
Sbjct: 231  PNFSAKWRRYLYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLV 290

Query: 795  SATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHA 616
             +  + E    +KP  F +  VNQ L++LEG+ LSYK+FARDT+ASR+ GP TEC +YHA
Sbjct: 291  LSPNDEELVSADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHA 350

Query: 615  RAAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLM 436
            RAA   LPC+ +  G   ++VMCVELVANRFLRKM               A  +  L LM
Sbjct: 351  RAAETRLPCLEQGVG---RSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELM 407

Query: 435  EATCRRASAPPAPPDGLCLVDVGYEDINNENSIFLIN 325
            +ATCRRA+APPAPPDGL LVDVGY D +++   F++N
Sbjct: 408  DATCRRATAPPAPPDGLSLVDVGYTDFDSQ-ICFILN 443



 Score = 72.4 bits (176), Expect(2) = 3e-77
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KD+ G+W R TFKI+LSYDG+ FDGWQKQPGLNTVQGL+E
Sbjct: 109  KDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVE 148


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  245 bits (625), Expect(2) = 3e-77
 Identities = 136/277 (49%), Positives = 172/277 (62%), Gaps = 23/277 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWR DV   ++E  IN+ A   L+ +SV +V R FH
Sbjct: 171  EGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQDIEDSINSAAPGKLRTSSVSQVSRIFH 230

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEK-----------------------V 796
            PNFSAKWRRYLYILPL++GE      +T + +E  +                       V
Sbjct: 231  PNFSAKWRRYLYILPLNDGENMEPDSTTWENVENREEENFVKIEASNGEKCVDGIHDNLV 290

Query: 795  SATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHA 616
             +  + E    +KP  F +  VNQ L++LEG+ LSYK+FARDT+ASR+ GP TEC +YHA
Sbjct: 291  LSPNDQELVSADKPQTFSITRVNQLLRKLEGKLLSYKMFARDTKASRNEGPPTECFVYHA 350

Query: 615  RAAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLM 436
            RAA   LPC+ +  G   ++VMCVELVANRFLRKM               A  +  L LM
Sbjct: 351  RAAETRLPCLEQGVG---RSVMCVELVANRFLRKMVRVLVATAIREAAAGAGEDALLELM 407

Query: 435  EATCRRASAPPAPPDGLCLVDVGYEDINNENSIFLIN 325
            +ATCRRA+APPAPPDGL LVDVGY D +++   F++N
Sbjct: 408  DATCRRATAPPAPPDGLSLVDVGYTDFDSQ-ICFILN 443



 Score = 72.4 bits (176), Expect(2) = 3e-77
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KD+ G+W R TFKI+LSYDG+ FDGWQKQPGLNTVQGL+E
Sbjct: 109  KDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQGLVE 148


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  252 bits (644), Expect(2) = 6e-77
 Identities = 138/267 (51%), Positives = 166/267 (62%), Gaps = 22/267 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGVSAL QVCSFYTWRKDV   E+E  IN+ A   ++V SV EV R FH
Sbjct: 173  EGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHEIEDAINSSAPGKIRVISVSEVSRVFH 232

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEM----------------------EKVS 793
            PNFSAKWRRYLYI P+++GE       ++D+  +                      E++ 
Sbjct: 233  PNFSAKWRRYLYIFPINDGEDSEQSFDSEDLENLRSYEKYDEQRNGCAELTSEEHVEELI 292

Query: 792  ATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHAR 613
             + + E +   KP  F +  VNQ LQQLEG+ LSYKIFARDT+ASR+ GP TEC IYHAR
Sbjct: 293  TSDKDELEGAKKPRIFSICRVNQLLQQLEGKLLSYKIFARDTKASRNVGPPTECFIYHAR 352

Query: 612  AAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLME 433
            A  A LPC    +G   + VMCVELVANRFLRKM               A+ +  L LM+
Sbjct: 353  ATEARLPCPDHGEG---RKVMCVELVANRFLRKMVRVLVATSIREAAAGAEDDALLKLMD 409

Query: 432  ATCRRASAPPAPPDGLCLVDVGYEDIN 352
            A+CRRASAPPAPPDGLCL DVGY + +
Sbjct: 410  ASCRRASAPPAPPDGLCLFDVGYTEFD 436



 Score = 63.9 bits (154), Expect(2) = 6e-77
 Identities = 29/40 (72%), Positives = 32/40 (80%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            +DR G+W R  FKI LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 111  EDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQGLVE 150


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  242 bits (618), Expect(2) = 8e-77
 Identities = 132/269 (49%), Positives = 170/269 (63%), Gaps = 24/269 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E  ++VAGRTDKGV+AL QVCSFYTW+KDV   ++E  IN  A   L+V SV EV R FH
Sbjct: 161  EGMVTVAGRTDKGVTALQQVCSFYTWKKDVKVQDIEDAINGAAPGKLRVISVSEVSRIFH 220

Query: 906  PNFSAKWRRYLYILPLHEG-EGDGMCKSTKDILEM-----------------------EK 799
            PNFSAKWR Y YI PL++G +G+ + ++  DI ++                       E 
Sbjct: 221  PNFSAKWRHYFYIFPLNDGDDGEQISENEMDIQKISFNEKYGEQGSECPAQYNGGENTEN 280

Query: 798  VSATAESEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYH 619
            +    + E++   KP  F ++ V+Q L+QLEG+ LSYKIFARDT+ASR+ GP TEC ++H
Sbjct: 281  LIFDDDGEFESRKKPSTFSISRVDQLLRQLEGKLLSYKIFARDTKASRNIGPPTECFVFH 340

Query: 618  ARAAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNL 439
            ARA  A L     DDG  TK VMC+ELVANRFLRKM               A+ +  L L
Sbjct: 341  ARATEARLQF--SDDGEGTK-VMCIELVANRFLRKMVRVLVATSIREAAAGAEQDALLKL 397

Query: 438  MEATCRRASAPPAPPDGLCLVDVGYEDIN 352
            M+ATCRRA+APPAPPDGLCL+DVG+ + +
Sbjct: 398  MDATCRRATAPPAPPDGLCLIDVGFTEFD 426



 Score = 73.6 bits (179), Expect(2) = 8e-77
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDRGG+W R TFKI+LSY G+ FDGWQKQPGLNTVQGL+E
Sbjct: 99   KDRGGRWARLTFKIVLSYHGASFDGWQKQPGLNTVQGLVE 138


>gb|AFK45334.1| unknown [Medicago truncatula]
          Length = 400

 Score =  250 bits (639), Expect(2) = 1e-76
 Identities = 134/256 (52%), Positives = 168/256 (65%), Gaps = 4/256 (1%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            +   +VAGRTDKGV+AL QVCSFYTW+KD+   E+E  IN  A   L+V SVYEV R FH
Sbjct: 146  QGCAAVAGRTDKGVTALQQVCSFYTWKKDIKPREIEDAINDAAPGKLRVVSVYEVSRAFH 205

Query: 906  PNFSAKWRRYLYILPLHEG----EGDGMCKSTKDILEMEKVSATAESEYKQLNKPYNFDV 739
            PNFSAKWRRYLYI PL +G    +  G  +S    +  E   + ++ E ++ NK Y F V
Sbjct: 206  PNFSAKWRRYLYIFPLTDGQDKDQSGGNGESCDSFIYNEICDSDSKDELEKENKSYVFGV 265

Query: 738  ALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGKDDGHRTK 559
              VN+ LQ+LEG+ LSYK+FARDT+ASR+ GP TEC ++HARA  A LP    ++G  T+
Sbjct: 266  RKVNRLLQKLEGKMLSYKMFARDTKASRNDGPPTECFVHHARAMEAKLPI--TENGEETR 323

Query: 558  NVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCL 379
             VMC+ELVANRFLRKM               A+ +  L LM+ATCRRA+APPAPPDGL L
Sbjct: 324  -VMCIELVANRFLRKMVRVLVATTIREAAAGAEDDALLKLMDATCRRATAPPAPPDGLGL 382

Query: 378  VDVGYEDINNENSIFL 331
            VDVGY +   E    +
Sbjct: 383  VDVGYAEFEREKCFIM 398



 Score = 65.1 bits (157), Expect(2) = 1e-76
 Identities = 29/40 (72%), Positives = 31/40 (77%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDR GKW R  FKILLSY G  FDGWQKQP LNTVQ ++E
Sbjct: 84   KDRSGKWARFNFKILLSYHGGSFDGWQKQPNLNTVQSVVE 123


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  248 bits (634), Expect(2) = 2e-76
 Identities = 141/273 (51%), Positives = 168/273 (61%), Gaps = 23/273 (8%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGVSA+ QVCSFYTWRKDV   ++E  IN++A   L+V SV EV R FH
Sbjct: 173  EGCAVVAGRTDKGVSAIRQVCSFYTWRKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFH 232

Query: 906  PNFSAKWRRYLYILPLHEGEGDGM-CKSTKDI-------------------LEMEKVSAT 787
            PNFSAKWR YLYI PL   E +   C++ K++                   +  E V   
Sbjct: 233  PNFSAKWRHYLYIFPLSNQEIEKQSCENKKEVENFISDGNYNEQRNGYLENIRWENVENL 292

Query: 786  AESEYKQL---NKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHA 616
              S+   L   NKP  F V  VNQ LQQLE + LSYK+FARDT+ASR+ GP TEC +YHA
Sbjct: 293  IISDNMGLEAANKPTRFSVCRVNQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHA 352

Query: 615  RAAVATLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLM 436
            RAA A +PC   D G   + VMCVELVANRFLRKM               A+ +  L LM
Sbjct: 353  RAAEARIPCSVNDHG-EGREVMCVELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLM 411

Query: 435  EATCRRASAPPAPPDGLCLVDVGYEDINNENSI 337
             ATCRRA+APPAPPDGLCLVDVGY + + +N +
Sbjct: 412  GATCRRATAPPAPPDGLCLVDVGYTEFDPQNCL 444



 Score = 66.2 bits (160), Expect(2) = 2e-76
 Identities = 27/41 (65%), Positives = 35/41 (85%)
 Frame = -1

Query: 1267 KKDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            K +R G+W+R TFKI++SY+G  FDGWQKQPGLNTVQ ++E
Sbjct: 110  KGERSGRWERVTFKIIISYNGGAFDGWQKQPGLNTVQEIVE 150


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  255 bits (652), Expect(2) = 2e-76
 Identities = 141/268 (52%), Positives = 169/268 (63%), Gaps = 18/268 (6%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWRKDV   E+E  IN+ A   ++V SV +V R FH
Sbjct: 186  EGCALVAGRTDKGVTALQQVCSFYTWRKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFH 245

Query: 906  PNFSAKWRRYLYILPLHEGE-----------------GDGMCKSTKDILE-MEKVSATAE 781
            PNFSAKWRRYLYI PL++GE                  + + K +    E +E +    E
Sbjct: 246  PNFSAKWRRYLYIFPLNDGEKREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDE 305

Query: 780  SEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVA 601
              +    KP NF +  VN  LQ+LEG+ LSYK FARDT+ASR+ GP TEC IYHARA  A
Sbjct: 306  GGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEA 365

Query: 600  TLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCR 421
            TLPC   D G   K VMCVELVANRFLRKM               AD +  L L++ATCR
Sbjct: 366  TLPCPVNDHGEGRK-VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCR 424

Query: 420  RASAPPAPPDGLCLVDVGYEDINNENSI 337
            RA+APPAPP+GLCLVDVGY + + +NS+
Sbjct: 425  RATAPPAPPEGLCLVDVGYTNFDPQNSL 452



 Score = 58.9 bits (141), Expect(2) = 2e-76
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = -1

Query: 1252 GKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            G+W R  FKI++SY G  FDGWQKQP LNTVQGL+E
Sbjct: 128  GRWARANFKIVVSYHGPSFDGWQKQPDLNTVQGLVE 163


>ref|XP_006453182.1| hypothetical protein CICLE_v10008288mg [Citrus clementina]
            gi|557556408|gb|ESR66422.1| hypothetical protein
            CICLE_v10008288mg [Citrus clementina]
          Length = 447

 Score =  255 bits (652), Expect(2) = 2e-76
 Identities = 141/268 (52%), Positives = 169/268 (63%), Gaps = 18/268 (6%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWRKDV   E+E  IN+ A   ++V SV +V R FH
Sbjct: 179  EGCALVAGRTDKGVTALQQVCSFYTWRKDVKPSEIEDAINSAAPGKIRVISVSQVSRVFH 238

Query: 906  PNFSAKWRRYLYILPLHEGE-----------------GDGMCKSTKDILE-MEKVSATAE 781
            PNFSAKWRRYLYI PL++GE                  + + K +    E +E +    E
Sbjct: 239  PNFSAKWRRYLYIFPLNDGEKREQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDE 298

Query: 780  SEYKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVA 601
              +    KP NF +  VN  LQ+LEG+ LSYK FARDT+ASR+ GP TEC IYHARA  A
Sbjct: 299  GGFGSHEKPRNFTICRVNLLLQRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEA 358

Query: 600  TLPCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCR 421
            TLPC   D G   K VMCVELVANRFLRKM               AD +  L L++ATCR
Sbjct: 359  TLPCPVNDHGEGRK-VMCVELVANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCR 417

Query: 420  RASAPPAPPDGLCLVDVGYEDINNENSI 337
            RA+APPAPP+GLCLVDVGY + + +NS+
Sbjct: 418  RATAPPAPPEGLCLVDVGYTNFDPQNSL 445



 Score = 58.9 bits (141), Expect(2) = 2e-76
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = -1

Query: 1252 GKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            G+W R  FKI++SY G  FDGWQKQP LNTVQGL+E
Sbjct: 121  GRWARANFKIVVSYHGPSFDGWQKQPDLNTVQGLVE 156


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  248 bits (632), Expect(2) = 2e-76
 Identities = 137/266 (51%), Positives = 165/266 (62%), Gaps = 16/266 (6%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            EA   VAGRTDKGV+AL QVCSFYTWRKD+T  ++E  IN  A   LK  SV EV R FH
Sbjct: 180  EACTVVAGRTDKGVTALQQVCSFYTWRKDITCQDIEEAINNAALGKLKAKSVSEVSRVFH 239

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILE-MEKVSATA---------------ESE 775
            PNFSAKWRRYLYI P ++ E +       + LE  EK+ +                   E
Sbjct: 240  PNFSAKWRRYLYIFPFNDEEDEEQSNKNGENLETYEKIESGCGEWNDESFGNLIIDDSEE 299

Query: 774  YKQLNKPYNFDVALVNQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATL 595
             +   KP +F V+ V+Q L+ LEG+ LSYK+FARDT+ASR+ GP TEC IYHARAA A L
Sbjct: 300  LESGKKPSSFSVSRVDQLLRLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARL 359

Query: 594  PCIGKDDGHRTKNVMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRA 415
            P     +G   + +MCVELVANRFLRKM               A+ +  L LM+ATCRRA
Sbjct: 360  PTSDCTEG---RKIMCVELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRA 416

Query: 414  SAPPAPPDGLCLVDVGYEDINNENSI 337
            +APPAPPDGLCLVDVGY +    N +
Sbjct: 417  TAPPAPPDGLCLVDVGYSEFKPNNCL 442



 Score = 66.6 bits (161), Expect(2) = 2e-76
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            ++R G+W R TFK++L Y G+ FDGWQKQPGLNTVQGL+E
Sbjct: 118  EERSGRWARATFKVVLGYHGASFDGWQKQPGLNTVQGLVE 157


>ref|XP_006656336.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Oryza
            brachyantha]
          Length = 364

 Score =  240 bits (612), Expect(2) = 2e-76
 Identities = 133/250 (53%), Positives = 166/250 (66%), Gaps = 3/250 (1%)
 Frame = -2

Query: 1086 EAAISVAGRTDKGVSALHQVCSFYTWRKDVTALEVEAEINALASECLKVASVYEVPREFH 907
            E    VAGRTDKGV+AL QVCSFYTWRKDV + +++  IN    + L++  V EV REFH
Sbjct: 122  EGCAIVAGRTDKGVTALQQVCSFYTWRKDVKSRDIKDAINKATPDKLRLLHVSEVSREFH 181

Query: 906  PNFSAKWRRYLYILPLHEGEGDGMCKSTKDILEMEKVSATAE-SEYKQLNKPYNFDVALV 730
            PNF+AKWRRYLYI PL E          K I   E+ S   E SEY    KP +F+V  V
Sbjct: 182  PNFAAKWRRYLYIFPLDE--------DAKPISGEEQPSKILEGSEYN--IKPQSFNVVKV 231

Query: 729  NQFLQQLEGRCLSYKIFARDTQASRSSGPATECTIYHARAAVATLPCIGK--DDGHRTKN 556
            ++ ++QLEG+ LSYK+FARDTQASRS GP TEC ++H+RA+V  L    +  ++G R   
Sbjct: 232  DKIIRQLEGKSLSYKMFARDTQASRSVGPPTECFMFHSRASVVKLHSADENCEEGMR--- 288

Query: 555  VMCVELVANRFLRKMXXXXXXXXXXXXXXXADPNIFLNLMEATCRRASAPPAPPDGLCLV 376
             +C+ELVANRFLRKM               A+ +  LNLMEATCRRA+APPAPP+GLCLV
Sbjct: 289  AICIELVANRFLRKMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPEGLCLV 348

Query: 375  DVGYEDINNE 346
            DVGY+D N +
Sbjct: 349  DVGYDDFNRQ 358



 Score = 74.3 bits (181), Expect(2) = 2e-76
 Identities = 32/40 (80%), Positives = 36/40 (90%)
 Frame = -1

Query: 1264 KDRGGKWDRRTFKILLSYDGSYFDGWQKQPGLNTVQGLLE 1145
            KDRGG+W+R TFKI+LSY G  FDGWQKQPGLNTVQGL+E
Sbjct: 60   KDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQGLVE 99