BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00012454
         (2058 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ESW05690.1| hypothetical protein PHAVU_011G201300g [Phaseolus...   714   0.0  
ref|XP_004229596.1| PREDICTED: DNA-directed RNA polymerase I sub...   714   0.0  
ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymer...   714   0.0  
ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I sub...   714   0.0  
ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymer...   709   0.0  
ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymer...   708   0.0  
ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I sub...   707   0.0  
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub...   707   0.0  
ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymer...   704   0.0  
gb|EOY19647.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma ca...   694   0.0  
emb|CBI35100.3| unnamed protein product [Vitis vinifera]              691   0.0  
ref|XP_001773955.1| predicted protein [Physcomitrella patens] gi...   687   0.0  
ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I sub...   685   0.0  
ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana...   676   0.0  
ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arab...   671   0.0  
ref|XP_006415532.1| hypothetical protein EUTSA_v10006599mg [Eutr...   671   0.0  
ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putat...   663   0.0  
ref|XP_006415533.1| hypothetical protein EUTSA_v10006600mg [Eutr...   662   0.0  
ref|XP_006464288.1| PREDICTED: probable DNA-directed RNA polymer...   662   0.0  
ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymer...   662   0.0  

>gb|ESW05690.1| hypothetical protein PHAVU_011G201300g [Phaseolus vulgaris]
          Length = 1180

 Score =  714 bits (1843), Expect = 0.0
 Identities = 348/651 (53%), Positives = 472/651 (72%), Gaps = 4/651 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQ--SGNKLRMWLERPCIFSPDKENAEGRH 287
            +L   H++SF++ ++ GL++ +L+++ +E+    +  KLR+WLE P ++ P KE      
Sbjct: 16   ELFKHHIESFDHMVKAGLETTLLHIKPIEVLDDFTTTKLRIWLENPVVYPPQKERISKTM 75

Query: 288  EQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPH 467
             + L+P+ECRQA ISY G+  +DVCFQ+NDG VIRE   FG+ PIML+S LC+L+   P 
Sbjct: 76   REALLPFECRQAKISYAGKITIDVCFQYNDGPVIRENVNFGQFPIMLQSKLCNLRGADPK 135

Query: 468  QLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRC 647
            +LV  +EE +E+GGYFI NG ER+IRLLI PKRN+P+++ R+++ +R   YTDKAVV+RC
Sbjct: 136  KLVSCKEEASEMGGYFILNGLERVIRLLILPKRNYPMSMVRSSFCDRREGYTDKAVVIRC 195

Query: 648  TRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNS 827
             R DQSS++ RLYYL++GSA +GF LR REYL+PVG++LKALID TD EI+  L S  N 
Sbjct: 196  VRADQSSLSIRLYYLRNGSARLGFWLRGREYLLPVGIVLKALIDTTDREIYVNLTSCYNE 255

Query: 828  LSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVG 1007
                 KG VGT+ V +RA IILDE++  +++T+R+ L++IGE F+ ++  + + S   V 
Sbjct: 256  KYAKGKGAVGTQLVGERAKIILDELRDLSLFTRRQCLEYIGEHFQPIMPELMKDSYAIVA 315

Query: 1008 EALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTIS 1187
            +A++K+ ILVHLD+  DKFN LIFMLQKLF+L+D T+ PDNPD+LQN E LLPGHL+++ 
Sbjct: 316  DAVLKDCILVHLDNDFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLISLY 375

Query: 1188 IKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGNL 1367
            IKEKL++WL K K +L  EI     KFD  D+A+VKK M+K     V  SVEN++ TG L
Sbjct: 376  IKEKLEDWLQKGKKLLMDEIQKKSNKFDFSDIAQVKKIMDKNSAKLVSASVENLLKTGRL 435

Query: 1368 TXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLCP 1547
                          TV AERLNF RF+SHFR++HRG+ F  +RTTTVRKLLPESWGFLCP
Sbjct: 436  VTQTGLDLQQRAGYTVQAERLNFLRFMSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 495

Query: 1548 VHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQV 1727
            VHTPDG PCGLLNH+T  C+IT+  D++G++KD  KI+K++  +L+++GM  SLP++   
Sbjct: 496  VHTPDGEPCGLLNHMTRTCRITSFFDSQGNIKDYFKIQKSIRDILMEVGMTSSLPKIFLP 555

Query: 1728 GPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYPG 1907
            GPPE L +LLDG V+G ++SS++   V  IR  K+   S IP D+EVGY+P S  GAYPG
Sbjct: 556  GPPEALTVLLDGCVVGCIASSEVEKVVAYIRELKVSSASVIPGDMEVGYVPLSMGGAYPG 615

Query: 1908 LFLFSSPSRFVRPVKSIIDTEN--PCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            L+LF+SPSRFVRPVK+I    N     ELIGPFEQ FMEI+C+DGG+GGRK
Sbjct: 616  LYLFTSPSRFVRPVKNISIPSNGSESIELIGPFEQVFMEIRCLDGGDGGRK 666


>ref|XP_004229596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Solanum
            lycopersicum]
          Length = 1184

 Score =  714 bits (1843), Expect = 0.0
 Identities = 352/653 (53%), Positives = 474/653 (72%), Gaps = 5/653 (0%)
 Frame = +3

Query: 111  EDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGN--KLRMWLERPCIFSPDKENAEGR 284
            ++L S H++SF+Y ++ GL++ +LN++ +EI  S +  KLR+W  +P +F P KE A   
Sbjct: 29   KELFSHHIESFDYMVDNGLETMLLNIKPIEIVDSFSSLKLRIWFGKPELFPPQKERASKA 88

Query: 285  HEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGP 464
                L P+ECRQA ISY G+F +D+CFQ+ DG VIRE+  FG+ PIML+S LCHL+    
Sbjct: 89   MHDALYPFECRQAKISYSGKFLVDICFQYGDGAVIREKFNFGQFPIMLKSKLCHLRGADD 148

Query: 465  HQ-LVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVV 641
             + LV  +EEP+E+GGYFI  G ER+IRL+I PKRN+P ++ RN++R+R   Y+DKAVV+
Sbjct: 149  SKKLVAYKEEPSEMGGYFILKGLERVIRLIILPKRNYPTSMARNSFRDRREGYSDKAVVI 208

Query: 642  RCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVC 821
            RC R DQS+V+ +LYYL +GSA +GF ++ REYL+PVG+ILKAL+D TD EI+  L    
Sbjct: 209  RCVREDQSAVSLKLYYLNNGSARLGFWIQGREYLLPVGIILKALVDTTDHEIYVNLTCCY 268

Query: 822  NSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIA 1001
            N      KG VGT+ V +RA IILDEV+  +++T+ + L+ IGE F+ V+ GM+  S   
Sbjct: 269  NEECDRVKGSVGTQLVGERAKIILDEVQALSLFTRAQCLRHIGEHFQPVVIGMQNDSYKT 328

Query: 1002 VGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLT 1181
            V +A++++YI VHLD+  DKFN LIFMLQKLF+L+D T+  DNPD+LQNQE LLPGHL+T
Sbjct: 329  VADAVLRDYIFVHLDNNHDKFNLLIFMLQKLFSLIDQTSVLDNPDSLQNQEVLLPGHLIT 388

Query: 1182 ISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTG 1361
            I +KEKLQ+WL K++  L +E + +K+KF+L  +  VKKA+EK     +G ++E+M+ TG
Sbjct: 389  IYLKEKLQDWLLKLQRSLQEETDGEKKKFELSSLTDVKKAIEKNAPKQIGLTIESMLKTG 448

Query: 1362 NLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFL 1541
             L             MTV AE+LNF RFLSHFR++HRG+ F  +RTT+VRKLLPESWGFL
Sbjct: 449  RLATQSGLDLQQRAGMTVQAEKLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPESWGFL 508

Query: 1542 CPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVS 1721
            CPVHTPDG PCGLLNH+T +C+IT+  D++G+VKD  K+R ++  VLI +GM PS P++ 
Sbjct: 509  CPVHTPDGEPCGLLNHMTASCRITSYYDSKGNVKDFFKMRMSILNVLIAIGMTPSSPKLV 568

Query: 1722 QVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAY 1901
            Q GPPE L++LLDGR+ G++ S  I  AV  +R  KL   S IP DLEVGYIP S +GAY
Sbjct: 569  QAGPPELLSVLLDGRIAGYIPSDLIEKAVTHLRRLKLSSTSSIPVDLEVGYIPLSMNGAY 628

Query: 1902 PGLFLFSSPSRFVRPVKSII--DTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            PGL+LF+SPSRFVRPV++I     E    ELIGPFEQ +MEI C DGG+GGRK
Sbjct: 629  PGLYLFTSPSRFVRPVRNISAPAEEGNDLELIGPFEQVYMEISCPDGGDGGRK 681


>ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like,
            partial [Cucumis sativus]
          Length = 948

 Score =  714 bits (1843), Expect = 0.0
 Identities = 349/660 (52%), Positives = 478/660 (72%), Gaps = 4/660 (0%)
 Frame = +3

Query: 87   ESVNVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQS--GNKLRMWLERPCIFSP 260
            E+ +     +L   H++SF++ ++ GL++ + +++ VEI  S    KLR+WL +P ++ P
Sbjct: 7    ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPP 66

Query: 261  DKENAEGRHEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSL 440
             KE       + L+PYECRQA ISY G+F  DVCFQ+++  VIRE+  FG+ PIML+S L
Sbjct: 67   QKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKLNFGQFPIMLKSKL 126

Query: 441  CHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDY 620
            CHL+ L P +LV   EE +E+GGYF+ NG ER++RLLIAPKRN+P ++ RN++ +R   Y
Sbjct: 127  CHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGY 186

Query: 621  TDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIF 800
            TDKAVV+RC R DQSSVT +LYYL++GSA +GF ++ +EYL+P+GV+LKALID TD EI+
Sbjct: 187  TDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIY 246

Query: 801  QQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGM 980
              L S  +      KG VGT+ V +RA IILDEV+   ++  R+ L  IG+ F+ V+EG+
Sbjct: 247  ASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGL 306

Query: 981  ERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEAL 1160
             ++    V +A++K+YI VHLD+  DKFN LIFM QKLF+L+D T+ PDNPD+LQNQ+ L
Sbjct: 307  GKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVL 366

Query: 1161 LPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSV 1340
            LPG L+T+ +KEKL++WL KVK +L+ EI++  + F+   +A VKK M+K  +  V  +V
Sbjct: 367  LPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAV 426

Query: 1341 ENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLL 1520
            ENM+ TG L              TV AERLNF RF+SHFR++HRG+ F  +RTTTVRKLL
Sbjct: 427  ENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLL 486

Query: 1521 PESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMI 1700
            PESWGFLCPVHTPDG PCGLLNHLT  C+IT+  +++G V+D  KIR ++ +VLI +GMI
Sbjct: 487  PESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMI 546

Query: 1701 PSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIP 1880
            PSLP++ Q+G P++L +LLDGR++G++SS+++   V  +R  K+     IP+DLEVGY+P
Sbjct: 547  PSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVP 606

Query: 1881 CSFSGAYPGLFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
             S SGAYPGL+LF+SPSRFVRPVK  SI   +N   ELIGPFEQ FMEI+C DGG+GGRK
Sbjct: 607  LSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRK 666


>ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
            sativus]
          Length = 1173

 Score =  714 bits (1842), Expect = 0.0
 Identities = 349/660 (52%), Positives = 478/660 (72%), Gaps = 4/660 (0%)
 Frame = +3

Query: 87   ESVNVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQS--GNKLRMWLERPCIFSP 260
            E+ +     +L   H++SF++ ++ GL++ + +++ VEI  S    KLR+WL +P ++ P
Sbjct: 7    ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPP 66

Query: 261  DKENAEGRHEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSL 440
             KE       + L+PYECRQA ISY G+F  DVCFQ+++  VIRE+  FG+ PIML+S L
Sbjct: 67   QKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKL 126

Query: 441  CHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDY 620
            CHL+ L P +LV   EE +E+GGYF+ NG ER++RLLIAPKRN+P ++ RN++ +R   Y
Sbjct: 127  CHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGY 186

Query: 621  TDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIF 800
            TDKAVV+RC R DQSSVT +LYYL++GSA +GF ++ +EYL+P+GV+LKALID TD EI+
Sbjct: 187  TDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHEIY 246

Query: 801  QQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGM 980
              L S  +      KG VGT+ V +RA IILDEV+   ++  R+ L  IG+ F+ V+EG+
Sbjct: 247  ASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVMEGL 306

Query: 981  ERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEAL 1160
             ++    V +A++K+YI VHLD+  DKFN LIFM QKLF+L+D T+ PDNPD+LQNQ+ L
Sbjct: 307  GKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQDVL 366

Query: 1161 LPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSV 1340
            LPG L+T+ +KEKL++WL KVK +L+ EI++  + F+   +A VKK M+K  +  V  +V
Sbjct: 367  LPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSSAV 426

Query: 1341 ENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLL 1520
            ENM+ TG L              TV AERLNF RF+SHFR++HRG+ F  +RTTTVRKLL
Sbjct: 427  ENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLL 486

Query: 1521 PESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMI 1700
            PESWGFLCPVHTPDG PCGLLNHLT  C+IT+  +++G V+D  KIR ++ +VLI +GMI
Sbjct: 487  PESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVGMI 546

Query: 1701 PSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIP 1880
            PSLP++ Q+G P++L +LLDGR++G++SS+++   V  +R  K+     IP+DLEVGY+P
Sbjct: 547  PSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGYVP 606

Query: 1881 CSFSGAYPGLFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
             S SGAYPGL+LF+SPSRFVRPVK  SI   +N   ELIGPFEQ FMEI+C DGG+GGRK
Sbjct: 607  LSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGGRK 666


>ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            [Solanum tuberosum]
          Length = 1179

 Score =  709 bits (1831), Expect = 0.0
 Identities = 348/653 (53%), Positives = 473/653 (72%), Gaps = 5/653 (0%)
 Frame = +3

Query: 111  EDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGN--KLRMWLERPCIFSPDKENAEGR 284
            ++L S H++SF+Y ++ GL++ +LN++ +EI  S +  KLR+W  +P +F P KE A   
Sbjct: 24   KELFSHHIESFDYMVDNGLETMLLNIKPIEIVDSFSSLKLRIWFGKPELFPPQKERASKT 83

Query: 285  HEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGP 464
                L P+ECRQA +SY G+F +D+CFQ+ DG VIRE+  FG+ PIML+S LCHL+    
Sbjct: 84   MHDALYPFECRQAKLSYTGKFLVDICFQYGDGAVIREKFNFGQFPIMLKSKLCHLRGADD 143

Query: 465  -HQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVV 641
              +L+  +EEP+E+GGYFI  G ER+IRL+I PKRN+P ++ RN++R+R   Y+DKAVV+
Sbjct: 144  SRKLIAYKEEPSEMGGYFILKGLERVIRLIILPKRNYPTSMARNSFRDRREGYSDKAVVI 203

Query: 642  RCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVC 821
            RC R DQS+V+ +LYYL +GSA +GF ++ REYL+PVG+ILKAL+D TD EI+  L    
Sbjct: 204  RCVREDQSAVSLKLYYLNNGSARLGFWIQGREYLLPVGIILKALVDTTDHEIYVNLTCCY 263

Query: 822  NSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIA 1001
            N      KG VGT+ V +RA IILDEV+  +++T+ + L+ IGE F+ V+ GM+  S   
Sbjct: 264  NEECDRVKGSVGTQLVGERAKIILDEVQALSLFTRAQCLRHIGEHFQPVVIGMQNDSYKT 323

Query: 1002 VGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLT 1181
            V +A++++YI VHLD+  DKFN LIFMLQKLF+L+D T+  DNPD+LQNQE LLPGHL+T
Sbjct: 324  VADAVLRDYIFVHLDNNHDKFNLLIFMLQKLFSLIDQTSVLDNPDSLQNQEVLLPGHLIT 383

Query: 1182 ISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTG 1361
            I +KEKLQ+WL K++  L +E + +K+KF+L  +  VKKA+EK     +G ++E+M+ TG
Sbjct: 384  IYLKEKLQDWLLKLQRSLQEETDGEKKKFELSSLTDVKKAIEKNAPKQIGLAIESMLKTG 443

Query: 1362 NLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFL 1541
             L             MTV AE+LNF RFLSHFR++HRG+ F  +RTT+VRKLLPESWGFL
Sbjct: 444  RLATQSGLDLQQRAGMTVQAEKLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPESWGFL 503

Query: 1542 CPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVS 1721
            CPVHTPDG PCGLLNH+T +C+IT+  D++G+VKD  K+R ++  VLI +GM P  P++ 
Sbjct: 504  CPVHTPDGEPCGLLNHMTASCRITSYYDSKGNVKDFFKMRMSILNVLIAIGMTPPSPKLV 563

Query: 1722 QVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAY 1901
            Q GPPE L++LLDGR+ G++ S  I  AV  +R  KL   S IP DLEVGYIP S +GAY
Sbjct: 564  QGGPPELLSVLLDGRIAGYIPSDLIEKAVTHLRRLKLSSTSSIPVDLEVGYIPLSMNGAY 623

Query: 1902 PGLFLFSSPSRFVRPVKSII--DTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            PGL+LF+SPSRFVRPV++I     E    EL+GPFEQ +MEI C DGG+GGRK
Sbjct: 624  PGLYLFTSPSRFVRPVRNISAPAEEGNDLELVGPFEQVYMEISCPDGGDGGRK 676


>ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X1 [Glycine max]
          Length = 1175

 Score =  708 bits (1828), Expect = 0.0
 Identities = 346/651 (53%), Positives = 467/651 (71%), Gaps = 4/651 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQ--SGNKLRMWLERPCIFSPDKENAEGRH 287
            +L   H++SF+Y  + GL++ + +++ +E+    +  KLR+WL+ P ++ P KE      
Sbjct: 16   ELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQKERISRTM 75

Query: 288  EQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPH 467
             + L+P+ECRQA ISY G+  +DVCFQ+NDG +IRE   FG+ PIML+S LC+L+   P 
Sbjct: 76   REALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPIMLQSKLCNLRGADPQ 135

Query: 468  QLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRC 647
            +LV  REE +E+GGYFI NG ER+IRLLI PKRNHP+++ RN++ +R   YTDKA+V+RC
Sbjct: 136  KLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYTDKAIVIRC 195

Query: 648  TRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNS 827
             R DQSS++ RLYYL++GSA +GF LR REYL+PVG+ILKALID TD EI+  L S  N 
Sbjct: 196  VRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVNLTSCYNE 255

Query: 828  LSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVG 1007
              +  KG VGT+ V +RA IILDE++  +++T+ + L++IGE F+ V+  ++  S   V 
Sbjct: 256  KYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVITELKNDSYPIVA 315

Query: 1008 EALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTIS 1187
            EA++K+ ILVHLD+  DKFN LIFMLQKLF+L+D T+ PDNPD+LQN E LLPGHL+T+ 
Sbjct: 316  EAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLY 375

Query: 1188 IKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGNL 1367
            +KEKL++WL K K +L  EI+   +KFD  D+ +VKK M+K     V  +VENM+ TG L
Sbjct: 376  LKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVENMLKTGRL 435

Query: 1368 TXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLCP 1547
                          TV AERLNF RF+SHFR++HRG+ F  +RTTTVRKLLPESWGFLCP
Sbjct: 436  VTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 495

Query: 1548 VHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQV 1727
            VHTPDG PCGLLNH+T   +IT+  D++G+VKD  KI+ ++  VL+++GM PSLP++   
Sbjct: 496  VHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGMTPSLPKIFLP 555

Query: 1728 GPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYPG 1907
            GPPE L +LLDG V+G ++SS+    V  IR  K+   + IP+D+EVGY+P S  GAYPG
Sbjct: 556  GPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYVPLSMGGAYPG 615

Query: 1908 LFLFSSPSRFVRPVKSIIDTENPC--TELIGPFEQAFMEIKCIDGGNGGRK 2054
            L+L +SPSRFVRPV++I    N     E IGPFEQ FMEI+C DGG+GGRK
Sbjct: 616  LYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDGGRK 666


>ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X2
            [Glycine max]
          Length = 1151

 Score =  707 bits (1826), Expect = 0.0
 Identities = 345/651 (52%), Positives = 470/651 (72%), Gaps = 4/651 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQ--SGNKLRMWLERPCIFSPDKENAEGRH 287
            +L   H++SF+Y ++ GLD+ + +++ VE+    +  KLR+WL+ P ++ P KE      
Sbjct: 16   ELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQKERISRTM 75

Query: 288  EQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPH 467
             + L+P+ECRQA ISY G+  +DVCFQ+NDG +IRE   FG+ PIML+S LC+L+   P 
Sbjct: 76   REALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCNLRGADPQ 135

Query: 468  QLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRC 647
            +LV  +EE +E+GGYFI NG ER++RLLI PKRN+P+++ RN++ +R   YTDKAVV+RC
Sbjct: 136  KLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYTDKAVVIRC 195

Query: 648  TRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNS 827
             R DQSS++ RLYYL++GSA +GF LR REYL+PVG+ILKALID TD EI+  L S  N 
Sbjct: 196  VRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVNLTSCYNE 255

Query: 828  LSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVG 1007
              +  KG VGT+ V +RA IILDE++  +++T+ + L++IGE F+ V+  ++  S   V 
Sbjct: 256  KYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELKNDSYPIVA 315

Query: 1008 EALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTIS 1187
            +A++K+ ILVHLD+  DKFN LIFMLQKLF+L+D T+ PDNPD+LQN E LLPGHL+T+ 
Sbjct: 316  DAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLY 375

Query: 1188 IKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGNL 1367
            +KEKL++WL K + +L  EI+   +KFD  D+ +VKK M+K     V  +VENM+ TG L
Sbjct: 376  LKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVENMLKTGRL 435

Query: 1368 TXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLCP 1547
                          TV AERLNF RFLSHFR++HRG+ F  +RTTTVRKLLPESWGFLCP
Sbjct: 436  VTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 495

Query: 1548 VHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQV 1727
            VHTPDG PCGLLNH+T   +IT+  D++G++KD  KI+ ++  VL+++GM PSLP++   
Sbjct: 496  VHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTPSLPKIFLP 555

Query: 1728 GPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYPG 1907
            GPPE L +LLDG V+G ++SS++   V  IR  K+   + IP+D+EVGY+P S  GAYPG
Sbjct: 556  GPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPLSMGGAYPG 615

Query: 1908 LFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            L+L +SPSRFVRPV+  SI    +   ELIGPFEQ FMEI+C DGG+GGRK
Sbjct: 616  LYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRK 666


>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform X1
            [Glycine max]
          Length = 1175

 Score =  707 bits (1826), Expect = 0.0
 Identities = 345/651 (52%), Positives = 470/651 (72%), Gaps = 4/651 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQ--SGNKLRMWLERPCIFSPDKENAEGRH 287
            +L   H++SF+Y ++ GLD+ + +++ VE+    +  KLR+WL+ P ++ P KE      
Sbjct: 16   ELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQKERISRTM 75

Query: 288  EQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPH 467
             + L+P+ECRQA ISY G+  +DVCFQ+NDG +IRE   FG+ PIML+S LC+L+   P 
Sbjct: 76   REALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCNLRGADPQ 135

Query: 468  QLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRC 647
            +LV  +EE +E+GGYFI NG ER++RLLI PKRN+P+++ RN++ +R   YTDKAVV+RC
Sbjct: 136  KLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYTDKAVVIRC 195

Query: 648  TRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNS 827
             R DQSS++ RLYYL++GSA +GF LR REYL+PVG+ILKALID TD EI+  L S  N 
Sbjct: 196  VRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYVNLTSCYNE 255

Query: 828  LSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVG 1007
              +  KG VGT+ V +RA IILDE++  +++T+ + L++IGE F+ V+  ++  S   V 
Sbjct: 256  KYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELKNDSYPIVA 315

Query: 1008 EALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTIS 1187
            +A++K+ ILVHLD+  DKFN LIFMLQKLF+L+D T+ PDNPD+LQN E LLPGHL+T+ 
Sbjct: 316  DAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLLPGHLITLY 375

Query: 1188 IKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGNL 1367
            +KEKL++WL K + +L  EI+   +KFD  D+ +VKK M+K     V  +VENM+ TG L
Sbjct: 376  LKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVENMLKTGRL 435

Query: 1368 TXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLCP 1547
                          TV AERLNF RFLSHFR++HRG+ F  +RTTTVRKLLPESWGFLCP
Sbjct: 436  VTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 495

Query: 1548 VHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQV 1727
            VHTPDG PCGLLNH+T   +IT+  D++G++KD  KI+ ++  VL+++GM PSLP++   
Sbjct: 496  VHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTPSLPKIFLP 555

Query: 1728 GPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYPG 1907
            GPPE L +LLDG V+G ++SS++   V  IR  K+   + IP+D+EVGY+P S  GAYPG
Sbjct: 556  GPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPLSMGGAYPG 615

Query: 1908 LFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            L+L +SPSRFVRPV+  SI    +   ELIGPFEQ FMEI+C DGG+GGRK
Sbjct: 616  LYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRK 666


>ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X1 [Cicer arietinum]
            gi|502078798|ref|XP_004486058.1| PREDICTED: probable
            DNA-directed RNA polymerase I subunit RPA2-like isoform
            X2 [Cicer arietinum]
          Length = 1177

 Score =  704 bits (1817), Expect = 0.0
 Identities = 336/661 (50%), Positives = 472/661 (71%), Gaps = 3/661 (0%)
 Frame = +3

Query: 81   SKESVNVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQ--SGNKLRMWLERPCIF 254
            S +  N     DL+ PH++SF++ ++ GL +  + ++ +E+        L++ ++ P IF
Sbjct: 11   SLDDANFDALRDLLKPHIESFDHMIDAGLKTMFIGIKPLEVPHPTQPTTLKISMDNPKIF 70

Query: 255  SPDKENAEGRHEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRS 434
             P KE    +    L P+ECRQA ISY G F  ++CFQ+++G ++RE+  FG+ PIML+S
Sbjct: 71   EPQKERGFSKSRNILYPFECRQAKISYTGTFTAELCFQYDNGPIVREKFNFGQFPIMLQS 130

Query: 435  SLCHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGR 614
             LC+L+   P +LV  +EE +EVGGYFI NG ER++RLLI PKRN+P++  R+++  R  
Sbjct: 131  KLCNLRGASPKKLVSYKEEASEVGGYFILNGLERVMRLLIMPKRNYPMSTVRSSFSERRE 190

Query: 615  DYTDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAE 794
             YTDKAVV+RC R DQ+SV+ +LYYL++GSA +GF +  REY++PVG++LKALID TD E
Sbjct: 191  GYTDKAVVIRCVRADQTSVSIKLYYLRNGSARLGFWILGREYMLPVGIVLKALIDTTDRE 250

Query: 795  IFQQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLE 974
            I+  L S  N   +  KG VGT+ V +RA IILDEV+  +++T+ + L++IGE F+ +L+
Sbjct: 251  IYVNLTSCYNEKYEKGKGAVGTQLVGERAKIILDEVRDLSLFTRLQCLQYIGEHFQPILQ 310

Query: 975  GMERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQE 1154
            G++ +S   V +A++++YILVHLD+  DKFN LIFMLQKLF+L+D T+ PDNPD+LQNQE
Sbjct: 311  GLKNESHHIVADAVLRDYILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNQE 370

Query: 1155 ALLPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGR 1334
             LLPGHL+T+ +KEKL+EWL K K +L  EI      F+   +A VKK +EK +T G+  
Sbjct: 371  VLLPGHLITLYLKEKLEEWLQKGKRLLLDEIEKKGATFEFGRIADVKKVLEKNHTKGIST 430

Query: 1335 SVENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRK 1514
            ++ENM+ TG L              TV AER+NF RF+SHFR++HRGS F  +RTTTVRK
Sbjct: 431  AIENMLKTGRLVTTTGLDLHQRAGYTVQAERINFLRFISHFRAVHRGSSFAGLRTTTVRK 490

Query: 1515 LLPESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLG 1694
            LLPESWGFLCPVHTPDG PCGLLNH+T  C++T+  D+EG++KD  KI+ ++  +L+++G
Sbjct: 491  LLPESWGFLCPVHTPDGEPCGLLNHMTRTCRVTSFYDSEGNIKDYFKIKLSILNILVEIG 550

Query: 1695 MIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGY 1874
            M  SLP++   GPPE L +LLDG ++GF+ S+++   V  IR  K+   + IP D+EVGY
Sbjct: 551  MTQSLPKIFLPGPPEVLTVLLDGCIVGFIPSTEVEKVVAHIRELKVSSAAVIPNDMEVGY 610

Query: 1875 IPCSFSGAYPGLFLFSSPSRFVRPVKSI-IDTENPCTELIGPFEQAFMEIKCIDGGNGGR 2051
            +P S  GAYPGL+LF+SPSRFVRPV+++ I + N   ELIGPFEQ FMEI+C DGG+GGR
Sbjct: 611  VPLSMGGAYPGLYLFTSPSRFVRPVRNLSIPSTNENVELIGPFEQVFMEIRCPDGGDGGR 670

Query: 2052 K 2054
            K
Sbjct: 671  K 671


>gb|EOY19647.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma cacao]
          Length = 1180

 Score =  694 bits (1792), Expect = 0.0
 Identities = 340/651 (52%), Positives = 455/651 (69%), Gaps = 4/651 (0%)
 Frame = +3

Query: 111  EDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGNK--LRMWLERPCIFSPDKENAEGR 284
            ++L   H++SF+Y ++ GLD  +  ++ V+I  S +   LR+WL+ P ++ P K+ +   
Sbjct: 22   KELFKHHIESFDYMIDEGLDLMLKRVKPVQIFDSSSNKTLRIWLDHPEVYPPQKDRSSKT 81

Query: 285  HEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGP 464
                L P+ECRQA ISY G F++DVCFQW+ GVV+RE+  FG  PIML+S  C+L++  P
Sbjct: 82   SAGALYPFECRQAKISYTGSFHIDVCFQWDGGVVVREKLNFGEFPIMLKSKRCYLREADP 141

Query: 465  HQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVR 644
             +LV  +EE  E+GGYFI NG ER++RLLI PKRN+P+++ RN++R+R   YTDKAVV+R
Sbjct: 142  RKLVACKEESREMGGYFILNGLERVVRLLILPKRNYPMSLVRNSFRDRREGYTDKAVVIR 201

Query: 645  CTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCN 824
            C R D SSVT +LYYL +GSA +GF ++ REY++PVG+ILKALID  D EI+ +L    N
Sbjct: 202  CVRGDLSSVTVKLYYLHNGSARLGFWVQGREYMLPVGIILKALIDTNDREIYTKLTCCYN 261

Query: 825  SLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAV 1004
              +   KG VGT+ V +RA IILDEV+   ++TQ + L+ IGE F+ ++EGME +S   V
Sbjct: 262  EKNGEGKGAVGTQLVGERAKIILDEVQHLALFTQEQCLQHIGEHFQPIMEGMESESYSTV 321

Query: 1005 GEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTI 1184
             + +++ YI VHLD   DKFN LIFM+QKLF+L+D T+APDN D+LQNQE LLPGHL+TI
Sbjct: 322  ADVVLRNYIFVHLDDNNDKFNLLIFMVQKLFSLIDQTSAPDNSDSLQNQEVLLPGHLITI 381

Query: 1185 SIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGN 1364
             +KEKL++WL K K +++  IN+  + FD   M  VKK MEK     V  ++EN++ TG 
Sbjct: 382  YLKEKLEDWLRKGKKLIEDAINNKSKNFDFCSMKDVKKVMEKNRPTQVSAAIENLLKTGR 441

Query: 1365 LTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLC 1544
            L              TV AERLN+ RFLS FR +HRG+ F  +RTT+VRKLLPESWGFLC
Sbjct: 442  LITQTGLDLQQRAGFTVQAERLNYHRFLSFFRCVHRGASFAGLRTTSVRKLLPESWGFLC 501

Query: 1545 PVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQ 1724
            PVHTPDG PCGLLNH+T  C+IT+  ++ G+++D  KIR ++  VL+ +GM  S P+V  
Sbjct: 502  PVHTPDGEPCGLLNHMTCTCRITSYYNSPGNIRDFFKIRMSILDVLVGVGMTTSWPKVDH 561

Query: 1725 VGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYP 1904
             GPP+ L +LLDGRV+G L S +    V  +R  KL   S IP+DLEVGY+P S  G YP
Sbjct: 562  AGPPQVLPVLLDGRVVGSLPSGEAEKVVAHLRRLKLAAASVIPDDLEVGYVPLSLGGTYP 621

Query: 1905 GLFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGR 2051
            GL+LF+SPSRFVRPV+  SI   +    ELIGPFEQ FMEI+C DGGNGGR
Sbjct: 622  GLYLFTSPSRFVRPVRNISIPSADGKDIELIGPFEQVFMEIRCPDGGNGGR 672


>emb|CBI35100.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  691 bits (1784), Expect = 0.0
 Identities = 336/629 (53%), Positives = 455/629 (72%), Gaps = 6/629 (0%)
 Frame = +3

Query: 186  LRSVEIRQSG----NKLRMWLERPCIFSPDKENAEGRHEQRLMPYECRQAGISYKGRFYL 353
            ++S+ I  +G     ++ +W  +P ++ P KE +       L P+ECRQA ISY G+   
Sbjct: 1    MKSLFITHNGVFFLTRIALWFGQPELYPPQKERSARTMRDALYPFECRQAKISYSGKLLA 60

Query: 354  DVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPHQLVGLREEPTEVGGYFICNGYE 533
            DVCFQ+ +GV IRE+   G+ PIML+S LCHL+   P +LV  +EE +E+GGYFI NG E
Sbjct: 61   DVCFQYGNGVAIREKFNLGQFPIMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLE 120

Query: 534  RLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRCTRTDQSSVTARLYYLQHGSASI 713
            R++RLLI PKRN+P+++ RN++R+R   YTDKAVV+RC R DQS+VT +LYYL++GSA +
Sbjct: 121  RVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARL 180

Query: 714  GFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNSLSQGQKGVVGTEFVTQRAIIIL 893
            GF ++ REYL+PVGV+LKALID TD EI++ L    +   +G KG VGT+ V +R  IIL
Sbjct: 181  GFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIIL 240

Query: 894  DEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVGEALIKEYILVHLDSFCDKFNFL 1073
            DEV+  +++T+ + L+ IGE F+ V++G+E +S   V +A+++EYI VHLD+  DKFN L
Sbjct: 241  DEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLREYIFVHLDNNYDKFNLL 300

Query: 1074 IFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTISIKEKLQEWLFKVKSVLDKEIND 1253
            IFM+QKLF+L+D T+ PDNPD LQNQE LLPGHL+TI +KEKLQEWL+K + +L  EIN 
Sbjct: 301  IFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDEIN- 359

Query: 1254 DKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGNLTXXXXXXXXXXXXMTVVAERLN 1433
             ++ F+   +A VKK M+K  +  +  +VENM+ TG L             MTV AERLN
Sbjct: 360  KRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAERLN 419

Query: 1434 FFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHLTVNCKIT 1613
            F RFLSHFR++HRG+ F  +RTT+VRKLLPE+WGFLCPVHTPDG PCGLLNH+   C+IT
Sbjct: 420  FLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTCRIT 479

Query: 1614 TDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSK 1793
            +  D+ G+ +D  KIR ++ +VLI +GM P+LP++ Q GPPE L+++LDGRV+G + SS+
Sbjct: 480  SYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIPSSE 539

Query: 1794 ITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYPGLFLFSSPSRFVRPVK--SIIDT 1967
            +  AV  +R  K+   S IP+DLEVGYIP S  GAYPGL+LF+SPSRFVRPV+  SI   
Sbjct: 540  VETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISIPSE 599

Query: 1968 ENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            E    ELIGPFEQ +MEI+C DG +GGR+
Sbjct: 600  EGHDIELIGPFEQVYMEIRCPDGSDGGRR 628


>ref|XP_001773955.1| predicted protein [Physcomitrella patens] gi|162674799|gb|EDQ61303.1|
            predicted protein [Physcomitrella patens]
          Length = 1199

 Score =  687 bits (1773), Expect = 0.0
 Identities = 334/649 (51%), Positives = 470/649 (72%), Gaps = 8/649 (1%)
 Frame = +3

Query: 84   KESVNVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQ--SGNKLRMWLERPCIFS 257
            +E ++     DL  PH +SF+YF+ERGL+ AV  L+ +E++   SG  LR+W+E+P +  
Sbjct: 34   EEELDCSSLYDLTKPHTESFDYFVERGLEEAVRRLQPIELKHPISGTSLRLWVEKPNVSP 93

Query: 258  PDKENAEGRHEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSS 437
            P K+      +QRL+P ECR AG++Y+G F  D+C QWN+GVV+R    +G++P+M++SS
Sbjct: 94   PMKDLGSQALDQRLLPSECRLAGLTYRGIFTADICMQWNNGVVVRHNISYGKMPVMVKSS 153

Query: 438  LCHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRD 617
            +CHL+ L   QLV  +EE TE+GGYFICNG ER+IRLLI PKRN+ + V+R +Y+NRG  
Sbjct: 154  VCHLRGLNQKQLVAAKEEATEMGGYFICNGNERIIRLLIMPKRNYVVGVKRTSYKNRGPS 213

Query: 618  YTDKAVVV-RCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAE 794
            Y+DK V++ RC R DQS+VT R+YY+ +GSAS+GFS+RR+E+LIPVG+ILKALI+  + E
Sbjct: 214  YSDKGVMISRCVRPDQSAVTMRMYYMNYGSASLGFSVRRQEFLIPVGIILKALIESNEYE 273

Query: 795  IFQQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLE 974
            I++QL S+  S S+  KG +G++FV+QRA IIL+EV+Q +++T+ + L+F+G      L 
Sbjct: 274  IYEQLMSI-QSDSKAMKGALGSQFVSQRAKIILEEVRQLSLFTRHDCLQFLGGLTCYFLL 332

Query: 975  GMERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQE 1154
                    +VGE ++ +YILVHLD+  DKFN L+FMLQKLFALVDG AAPDN D LQN E
Sbjct: 333  VK------SVGEQVLNDYILVHLDNPLDKFNLLVFMLQKLFALVDGMAAPDNADALQNHE 386

Query: 1155 ALLPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQD-----MARVKKAMEKIYT 1319
             LLPGHLLTI +K+++Q+WL +V+  L KE+ +   + DLQ      +  V+K  EK+  
Sbjct: 387  ILLPGHLLTIVVKDRIQDWLLRVQGQLLKEMKEKPAENDLQQPIDVTVKHVQKVFEKVPA 446

Query: 1320 DGVGRSVENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRT 1499
              V + VE ++NTGNL              T+VAE+LNF R+LSHFRS+HRG++F  +RT
Sbjct: 447  SDVSKKVEYLLNTGNLVSQSGLDLNQVGGFTLVAEKLNFLRYLSHFRSVHRGAFFATLRT 506

Query: 1500 TTVRKLLPESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTV 1679
            TTVRKLLPESWGF+CPVHTPDG+PCGLLNHLT  C+I++D+DA G+ KDP+ IRK++T V
Sbjct: 507  TTVRKLLPESWGFMCPVHTPDGSPCGLLNHLTAACQISSDLDARGNKKDPLAIRKSVTKV 566

Query: 1680 LIDLGMIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPED 1859
            +++LG++P LP++S + PPEYL +LLDG V+G L++  I   +E +R  K+  GS +P D
Sbjct: 567  MVNLGLVPVLPKLSNMAPPEYLTVLLDGCVIGHLATGAIPSIIEHLRRLKVVDGSEVPAD 626

Query: 1860 LEVGYIPCSFSGAYPGLFLFSSPSRFVRPVKSIIDTENPCTELIGPFEQ 2006
            +E+ YIPC+ +G+YPGL+L ++PSRF R VK +    +   ELIGP EQ
Sbjct: 627  MEIAYIPCTSAGSYPGLYLATTPSRFTRTVKQMFG--DGSLELIGPLEQ 673


>ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
            vinifera]
          Length = 1142

 Score =  685 bits (1767), Expect = 0.0
 Identities = 338/649 (52%), Positives = 460/649 (70%), Gaps = 2/649 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGNKLRMWLERPCIFSPDKENAEGRHEQ 293
            +L   H+DSF++ +E GL++ +++++     +S   +R                      
Sbjct: 13   ELFQHHIDSFDHLVEFGLETLLMSVKP----RSARTMR---------------------D 47

Query: 294  RLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPHQL 473
             L P+ECRQA ISY G+   DVCFQ+ +GV IRE+   G+ PIML+S LCHL+   P +L
Sbjct: 48   ALYPFECRQAKISYSGKLLADVCFQYGNGVAIREKFNLGQFPIMLKSKLCHLRGADPQKL 107

Query: 474  VGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRCTR 653
            V  +EE +E+GGYFI NG ER++RLLI PKRN+P+++ RN++R+R   YTDKAVV+RC R
Sbjct: 108  VSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVR 167

Query: 654  TDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNSLS 833
             DQS+VT +LYYL++GSA +GF ++ REYL+PVGV+LKALID TD EI++ L    +   
Sbjct: 168  EDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKY 227

Query: 834  QGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVGEA 1013
            +G KG VGT+ V +R  IILDEV+  +++T+ + L+ IGE F+ V++G+E +S   V +A
Sbjct: 228  EGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADA 287

Query: 1014 LIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTISIK 1193
            +++EYI VHLD+  DKFN LIFM+QKLF+L+D T+ PDNPD LQNQE LLPGHL+TI +K
Sbjct: 288  VLREYIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLK 347

Query: 1194 EKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGNLTX 1373
            EKLQEWL+K + +L  EIN  ++ F+   +A VKK M+K  +  +  +VENM+ TG L  
Sbjct: 348  EKLQEWLYKARRLLQDEIN-KRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVT 406

Query: 1374 XXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLCPVH 1553
                       MTV AERLNF RFLSHFR++HRG+ F  +RTT+VRKLLPE+WGFLCPVH
Sbjct: 407  QSGLDLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVH 466

Query: 1554 TPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQVGP 1733
            TPDG PCGLLNH+   C+IT+  D+ G+ +D  KIR ++ +VLI +GM P+LP++ Q GP
Sbjct: 467  TPDGEPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGP 526

Query: 1734 PEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYPGLF 1913
            PE L+++LDGRV+G + SS++  AV  +R  K+   S IP+DLEVGYIP S  GAYPGL+
Sbjct: 527  PEVLSVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLY 586

Query: 1914 LFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGRK 2054
            LF+SPSRFVRPV+  SI   E    ELIGPFEQ +MEI+C DG +GGR+
Sbjct: 587  LFTSPSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRR 635


>ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana]
            gi|332193031|gb|AEE31152.1| nuclear RNA polymerase A2
            [Arabidopsis thaliana]
          Length = 1178

 Score =  676 bits (1744), Expect = 0.0
 Identities = 336/651 (51%), Positives = 467/651 (71%), Gaps = 5/651 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSG--NKLRMWLERPCIFSPDKENAEGR- 284
            +LV+ H++SF+Y   +GLD     ++ V +      N+L +WLE P +F+P KE+ +   
Sbjct: 21   NLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQKESFKSTS 80

Query: 285  HEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGP 464
             ++ L+P+ECRQA ISY G F  DVCF++NDGVV+R++  FG+ PIML S LC LK    
Sbjct: 81   RKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADC 140

Query: 465  HQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVR 644
             +L+  +E  +E+GGYFI NG ER+ R +IAPKRNHP ++ RN++R+R   Y+ KAVV R
Sbjct: 141  RKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTR 200

Query: 645  CTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCN 824
            C R DQSSVT +LYYL++GSA +GF +  REYL+PVG++LKAL +  D EI++ L + C 
Sbjct: 201  CVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESL-NCCY 259

Query: 825  SLSQGQ-KGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIA 1001
            S   G+  G +GT+ V +RA IILDEV+   ++T+ +  K +G+ F+ VL+G++++S   
Sbjct: 260  SEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSI 319

Query: 1002 VGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLT 1181
            V EA++++Y+ VHLD+  DKFN LIF++QKL++LVD T+ PDNPD+LQNQE L+PGH++T
Sbjct: 320  VAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVIT 379

Query: 1182 ISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMINTG 1361
            I +KEKL+EWL K KS+L  E+++   KF  + +A VKK + K     +G S+E ++ TG
Sbjct: 380  IYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTG 439

Query: 1362 NLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFL 1541
             L              TV AERLNF RFLS FR++HRG+ F  +RTTTVRKLLPESWGFL
Sbjct: 440  ALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFL 499

Query: 1542 CPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVS 1721
            CPVHTPDGTPCGLLNH+T   +IT+  D++G+++D +KIRK++  VL   GM+PSLP++ 
Sbjct: 500  CPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLV 559

Query: 1722 QVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAY 1901
            + GPP+ + +LLDG+V+G LSS+ +T  V  IR  K++  S IPEDLEVGY+P S  G+Y
Sbjct: 560  RAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSY 619

Query: 1902 PGLFLFSSPSRFVRPVKSI-IDTENPCTELIGPFEQAFMEIKCIDGGNGGR 2051
            PGL+L S P+RF+RPVK+I I ++N   ELIGPFEQ FMEI C DGGNGGR
Sbjct: 620  PGLYLASCPARFIRPVKNISIPSDN--IELIGPFEQVFMEISCPDGGNGGR 668


>ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
            lyrata] gi|297339431|gb|EFH69848.1| hypothetical protein
            ARALYDRAFT_313639 [Arabidopsis lyrata subsp. lyrata]
          Length = 1188

 Score =  671 bits (1732), Expect = 0.0
 Identities = 332/664 (50%), Positives = 468/664 (70%), Gaps = 12/664 (1%)
 Frame = +3

Query: 96   NVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGNK---------LRMWLERPC 248
            +++   +LV+ H++SF+Y  ++GLD     ++ V +     +         + +WLE P 
Sbjct: 15   DLKELHNLVTHHIESFDYMTQKGLDVMFNRIKPVSVYDPNTENELSNILFFMILWLENPV 74

Query: 249  IFSPDKENAEGR-HEQRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIM 425
            +F+P KE+      ++ L+P+ECRQA ISY G F  DVCF++NDGVV+R++  FG+ PIM
Sbjct: 75   VFAPQKESFRSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDRFDFGQFPIM 134

Query: 426  LRSSLCHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRN 605
            L S LC L+     +L+  +E  +E+GGYFI NG ER+ R +IAPKRNHP ++ RN++R+
Sbjct: 135  LMSKLCSLRGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRD 194

Query: 606  RGRDYTDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVT 785
            R   YT+KAVV RC R DQSSVT +LYYL++GSA +GF +  REYL+PVG++LKAL +  
Sbjct: 195  RKEGYTEKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNTC 254

Query: 786  DAEIFQQLASVCNSLSQGQ-KGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFK 962
            D EI++ L + C S   G+  G +GT+ + +RA IILDEV+   ++T+ +  K +G+ F+
Sbjct: 255  DEEIYESL-NCCYSEHYGRGDGAIGTQLIRERAKIILDEVRDLGLFTREQCRKHLGQHFQ 313

Query: 963  TVLEGMERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTL 1142
             VL+G+E++S   V EA++++Y+ VHLD+  DKFN LIF++QKL++LVD T+ PDNPD+L
Sbjct: 314  PVLDGLEKESHPMVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSL 373

Query: 1143 QNQEALLPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTD 1322
            QNQE L+PGH++TI +KEKL++WL K KS+L  E+ +   KF  + +A VKK + K    
Sbjct: 374  QNQEILVPGHVITIYLKEKLEDWLRKCKSLLKDELLNTSSKFSFESLADVKKLINKNPPR 433

Query: 1323 GVGRSVENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTT 1502
             +G S+E ++ TG L              TV AERLNF RFLS FR++HRG+ F  +RTT
Sbjct: 434  SIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTT 493

Query: 1503 TVRKLLPESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVL 1682
            TVRKLLPESWGFLCPVHTPDGTPCGLLNH+T   +IT+  D++G+++D +KIRK++  VL
Sbjct: 494  TVRKLLPESWGFLCPVHTPDGTPCGLLNHMTCTSRITSQFDSKGNIRDFLKIRKSVVEVL 553

Query: 1683 IDLGMIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDL 1862
               GM+ SLP++ + GPP+ + +LLDG+V+G LSS+ +T  V  +R  K++  S IPEDL
Sbjct: 554  TGAGMVSSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYLRRLKVEAPSVIPEDL 613

Query: 1863 EVGYIPCSFSGAYPGLFLFSSPSRFVRPVKSI-IDTENPCTELIGPFEQAFMEIKCIDGG 2039
            EVGY+P S  G+YPGL+L S P+RF+RPVK+I I +EN   ELIGPFEQ FMEI C DGG
Sbjct: 614  EVGYVPISMGGSYPGLYLASCPARFIRPVKNISIPSEN--IELIGPFEQVFMEISCPDGG 671

Query: 2040 NGGR 2051
            NGGR
Sbjct: 672  NGGR 675


>ref|XP_006415532.1| hypothetical protein EUTSA_v10006599mg [Eutrema salsugineum]
            gi|557093303|gb|ESQ33885.1| hypothetical protein
            EUTSA_v10006599mg [Eutrema salsugineum]
          Length = 1183

 Score =  671 bits (1730), Expect = 0.0
 Identities = 335/671 (49%), Positives = 463/671 (69%), Gaps = 11/671 (1%)
 Frame = +3

Query: 72   DMDSKESVNVRVYED------LVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGN--KLR 227
            D+  K+   V   ED      LV+ H++SF+Y  E+GL      ++ V + +     KL 
Sbjct: 2    DVKEKKKDTVPKIEDFTELHNLVTHHIESFDYMTEKGLAVMFSRIKPVTVYEPSTERKLS 61

Query: 228  MWLERPCIFSPDKENAEGR-HEQRLMPYECRQAGISYKGRFYLDVCFQWN-DGVVIREQC 401
            +WLE P ++SP KE+      ++ L P+ECRQA ISY G    ++CF+++ D  V+R++ 
Sbjct: 62   IWLEDPRVYSPQKESLRSTSRKEALFPFECRQAKISYTGSLMAEICFRYDEDEYVVRDRY 121

Query: 402  QFGRIPIMLRSSLCHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLA 581
            +FG  PIML S LCHL+     QL+  +E  +E+GGYFI NG ER+ R +IAPKRNHP  
Sbjct: 122  EFGEFPIMLMSKLCHLRGADCRQLLKYKESTSEMGGYFILNGIERVFRCVIAPKRNHPTG 181

Query: 582  VERNTYRNRGRDYTDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVI 761
            + RN++  R   Y+DKAV +RC R DQSSVT +LYYL++GSA +GF +  REYL+PVGV+
Sbjct: 182  MVRNSFCGRREGYSDKAVAIRCVRDDQSSVTVKLYYLRNGSARVGFWIGAREYLLPVGVV 241

Query: 762  LKALIDVTDAEIFQQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALK 941
            LKAL +  D EI++ L    N       G +GT+ + +R+ IILDEV+   ++T+ +  K
Sbjct: 242  LKALTETNDEEIYENLTCCYNERYGRGDGAIGTQLIRERSKIILDEVRDLGLFTRDQCRK 301

Query: 942  FIGERFKTVLEGMERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAA 1121
            ++GERF+  L+G+E++S   V EA++K YI VHLD+  DKFN LIF++QKLF+LVD T+ 
Sbjct: 302  YLGERFQPALDGLEKESYPTVAEAVLKNYIFVHLDNDDDKFNLLIFLIQKLFSLVDQTSL 361

Query: 1122 PDNPDTLQNQEALLPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKA 1301
            PDNPD+LQNQE L+PGHL+TI +KEKL+EWL K KS+++ E N  K KF  + +A VKK 
Sbjct: 362  PDNPDSLQNQEILVPGHLITIYLKEKLEEWLRKCKSLIEDEFNRSK-KFSFETIADVKKI 420

Query: 1302 MEKIYTDGVGRSVENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSY 1481
            + K     +G S+E ++ +G L              TV AERLNF RFLS FR++HRG+ 
Sbjct: 421  INKNPPRSIGMSIETLLKSGRLNTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGAS 480

Query: 1482 FTQMRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIR 1661
            F  +RTTTVRKLLPESWGFLCPVHTPDG PCGLLNH+T  C+IT+  D+ G+++D +KIR
Sbjct: 481  FAGLRTTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTRTCRITSQFDSNGNIRDFLKIR 540

Query: 1662 KALTTVLIDLGMIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKG 1841
            K++  VL+ +GM+PSLP++ + GPP+ + +LLDG+V+G LSS+ +T  V  +R  K++  
Sbjct: 541  KSVVDVLVGVGMVPSLPKLVRAGPPKVITVLLDGQVVGSLSSNLVTEVVAYLRRLKVEAP 600

Query: 1842 SGIPEDLEVGYIPCSFSGAYPGLFLFSSPSRFVRPVK-SIIDTENPCTELIGPFEQAFME 2018
            S IPEDLEVGY+P S  G+YPGL+L S PSRF+RPVK + + ++N   EL+GPFEQ FME
Sbjct: 601  SVIPEDLEVGYVPTSMGGSYPGLYLASCPSRFIRPVKNNSVPSDN--IELVGPFEQVFME 658

Query: 2019 IKCIDGGNGGR 2051
            I C DGGNGGR
Sbjct: 659  ISCPDGGNGGR 669


>ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
            gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I
            subunit, putative [Ricinus communis]
          Length = 1159

 Score =  663 bits (1710), Expect = 0.0
 Identities = 338/655 (51%), Positives = 455/655 (69%), Gaps = 8/655 (1%)
 Frame = +3

Query: 111  EDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGNKLRMWLERPCIFSPDKENAEGRHE 290
            ++L   H+DSF+Y +ERGL+  + N++                         E++  +H+
Sbjct: 22   QELTRHHIDSFDYMIERGLEIMLDNIKP------------------------ESSRTKHK 57

Query: 291  QRLMPYECRQAGISYKGRFYLDVCFQWNDGVVIREQCQFGRIPIMLRSSLCHLKDLGPHQ 470
             RL+P+ECRQA ISY G+F  DVCF+++   VIRE+  FG++PIML+S LCHL  +   Q
Sbjct: 58   -RLLPFECRQAKISYTGKFEADVCFEYHGKAVIREKYNFGQLPIMLKSRLCHLYGVDSQQ 116

Query: 471  LVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRCT 650
            LV   EE  E+GGYFI NG ER++RLLI PKRN+P++  R ++R+R   YTDKAVV+RC 
Sbjct: 117  LVSFNEESAEMGGYFILNGLERVVRLLIMPKRNYPMSTVRGSFRDRREGYTDKAVVIRCV 176

Query: 651  R------TDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLA 812
            R      TDQSSV+ +LYYL+ GSA +GF ++ REYL+P G++LKAL + TD EI+++L 
Sbjct: 177  REYQSSLTDQSSVSVKLYYLRSGSARLGFWIQGREYLLPAGIVLKALAETTDREIYEKLT 236

Query: 813  SVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKS 992
               +   +  KG VG++ V +RA IILDEV+  +++TQ E L+ IGE F+ V++G+E+++
Sbjct: 237  CCYDEKYEKAKGAVGSQLVGERAKIILDEVRDLSLFTQSECLRHIGEHFQPVMDGLEKET 296

Query: 993  DIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGH 1172
               V  A++K+YI VHL+++ DKFN LIFMLQKLF+LVD T+  DNPD+LQNQE LLPGH
Sbjct: 297  FSNVAHAVLKDYIFVHLNNYDDKFNLLIFMLQKLFSLVDQTSVVDNPDSLQNQEVLLPGH 356

Query: 1173 LLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTDGVGRSVENMI 1352
            L+TI +KEKL+EWL K K VL +EI  +   F+   +  VKK ++K  +  +  +VENM+
Sbjct: 357  LVTIYLKEKLEEWLRKAKKVLQEEIAKNNN-FNFLSVLDVKKVIDKNPSTTISLAVENML 415

Query: 1353 NTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESW 1532
             TG L              TV AERLNF RFLS FR++HRG+ F  +RTT+VRKLLPESW
Sbjct: 416  KTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTSVRKLLPESW 475

Query: 1533 GFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLP 1712
            GFLCPVHTPDG PCGLLNH+T +C+IT+  D++G VKD   IRK++  VL  LGM  SLP
Sbjct: 476  GFLCPVHTPDGEPCGLLNHMTRSCRITSYFDSQGAVKDFFDIRKSILGVLTSLGMTSSLP 535

Query: 1713 RVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFS 1892
            ++ Q GPP+ L++LLDGRV+G + SS++   V  +R  K+   S IP+DLEVGY+P S  
Sbjct: 536  KLVQAGPPQVLSVLLDGRVVGSIPSSQVEKVVVHLRRLKVAASSVIPDDLEVGYVPLSMG 595

Query: 1893 GAYPGLFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDGGNGGR 2051
            GA+PGL+LF+SPSRF+RPVK  SI   E    ELIGPFEQ FMEI+C DGGNGGR
Sbjct: 596  GAFPGLYLFTSPSRFIRPVKNISIPAGEGENIELIGPFEQVFMEIRCPDGGNGGR 650


>ref|XP_006415533.1| hypothetical protein EUTSA_v10006600mg [Eutrema salsugineum]
            gi|557093304|gb|ESQ33886.1| hypothetical protein
            EUTSA_v10006600mg [Eutrema salsugineum]
          Length = 1181

 Score =  662 bits (1709), Expect = 0.0
 Identities = 324/650 (49%), Positives = 457/650 (70%), Gaps = 4/650 (0%)
 Frame = +3

Query: 114  DLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQSGNKLRMWLERPCIFSPDKENAEGRHEQ 293
            +LV+ H++SF+Y  E+GL      ++ V +  SGNKL +WL+ P ++ P KE+      Q
Sbjct: 20   NLVTHHIESFDYMTEKGLAVMFNRIKPVSVYDSGNKLSIWLDNPVVYPPQKESPSSTSRQ 79

Query: 294  R-LMPYECRQAGISYKGRFYLDVCFQWNDGV-VIREQCQFGRIPIMLRSSLCHLKDLGPH 467
              L P+ECRQA ISY G+   +VC Q+ND   VIR++  FG +PIML S LC+L+     
Sbjct: 80   EALFPFECRQAKISYTGKLMAEVCLQYNDEPPVIRDKFDFGELPIMLMSKLCNLRGADCR 139

Query: 468  QLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYRNRGRDYTDKAVVVRC 647
            +L+  +E  +E+GGYFI  G E++ R +IAPKRNHP+ + RN++ +R   ++DKAV +RC
Sbjct: 140  KLLKYKEATSEMGGYFILKGIEKVFRCVIAPKRNHPMGMVRNSFIHRQEGFSDKAVSIRC 199

Query: 648  TRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDVTDAEIFQQLASVCNS 827
             R DQSSVT +LYY+++GSA +GF L  +EYL+PVG++LKAL +  D EI++ L    N 
Sbjct: 200  VRDDQSSVTIKLYYVRNGSARVGFWLGGKEYLLPVGIVLKALTETNDEEIYENLNCCYNE 259

Query: 828  LSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFKTVLEGMERKSDIAVG 1007
              +   G +GT+ V +R+ IILDEV+   ++T+ +  K++GERF+  L+G+E++S   V 
Sbjct: 260  RFERCDGAIGTQLVRERSKIILDEVRDLGLFTRDQCRKYLGERFQPALDGLEKESYPTVA 319

Query: 1008 EALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTLQNQEALLPGHLLTIS 1187
            +A++K YI VHLD+  DKFN LIF++QKLF+LVD T+ PDNPD+LQNQE L+PGHL+TI 
Sbjct: 320  DAVLKNYIFVHLDNDDDKFNLLIFLIQKLFSLVDQTSLPDNPDSLQNQEILVPGHLITIY 379

Query: 1188 IKEKLQEWLFKVKSVLDKEINDDK-QKFDLQDMARVKKAMEKIYTDGVGRSVENMINTGN 1364
            +KEKL+ WL K KS++++E  ++K +K+  +  A VKK M +  +  +G S+   +  G 
Sbjct: 380  LKEKLEVWLRKCKSIIEQEFGNNKSKKYSFESHADVKKLMNRNPSSSIGTSIGTFLTRGE 439

Query: 1365 LTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTTTVRKLLPESWGFLC 1544
            +              TV AERLNF RFLS FR++HRG+ F  +RTTTVRKLLPESWGFLC
Sbjct: 440  IHTQYGLDFPESKGFTVQAERLNFIRFLSFFRAVHRGASFADLRTTTVRKLLPESWGFLC 499

Query: 1545 PVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVLIDLGMIPSLPRVSQ 1724
            PVHTPDGTPCGLLNH+T  C+IT+  D+ G+++D  KIRK++  VL+ +GM+ SLP++ +
Sbjct: 500  PVHTPDGTPCGLLNHMTRTCRITSQFDSNGNIRDFQKIRKSVVDVLVGVGMVCSLPKLVR 559

Query: 1725 VGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDLEVGYIPCSFSGAYP 1904
             GPP+ + +LLDG+V+G LSS+ +T  V  +R  K++  S IPEDLEVGY+P S  G+YP
Sbjct: 560  AGPPKVIPVLLDGQVVGSLSSNLVTEVVAYLRKLKVEAPSVIPEDLEVGYVPTSMGGSYP 619

Query: 1905 GLFLFSSPSRFVRPVKS-IIDTENPCTELIGPFEQAFMEIKCIDGGNGGR 2051
            GL+L S PSRF+RPVK+  + ++N   ELIGPFEQ FMEI C DGGNGGR
Sbjct: 620  GLYLASCPSRFIRPVKNKSVPSDN--IELIGPFEQVFMEISCPDGGNGGR 667


>ref|XP_006464288.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X2 [Citrus sinensis]
          Length = 954

 Score =  662 bits (1708), Expect = 0.0
 Identities = 330/666 (49%), Positives = 461/666 (69%), Gaps = 6/666 (0%)
 Frame = +3

Query: 75   MDSKESVNVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQS--GNKLRMWLERPC 248
            M  K+S +     +LV  H++SF+Y L+ GL     ++++V +  S    +L++ +  P 
Sbjct: 1    MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHVKTVFVHDSFTNKRLKISVGNPE 60

Query: 249  IFSPDKENAEGRHEQRLMPYECRQAGISYKGRFYLDVCFQWNDG--VVIREQCQFGRIPI 422
            IF P KE         L+P+ECRQA ISY G+   DV FQ+ D    V+RE+  FG+ P+
Sbjct: 61   IFPPQKEQGSKTLRDALLPFECRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPV 120

Query: 423  MLRSSLCHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYR 602
            ML++  CHL+     +LV L+EE  E+GGYFI NG ER+ R +I PK+N+P+++ R+++R
Sbjct: 121  MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 180

Query: 603  NRGRDYTDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDV 782
            +R   YTDKAVV+RC R DQSSVT +LYYL +GS  +GF L+ +EYL+PVG++LKAL+D 
Sbjct: 181  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 240

Query: 783  TDAEIFQQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFK 962
             D EIF  L    +   + +KG VG+  V++R  IIL EV+  ++ T+ + L+ IGE F+
Sbjct: 241  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 300

Query: 963  TVLEGMERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTL 1142
             V++G++ +S  AV E +I++YI VHL+   DKFN LIFMLQKLF+LVD T+  DNPD+L
Sbjct: 301  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 360

Query: 1143 QNQEALLPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTD 1322
            QNQE LLPGHL+TI +KEKL++WL K K ++  EI ++ +KFD  ++A +KK MEK  + 
Sbjct: 361  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 420

Query: 1323 GVGRSVENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTT 1502
             +G S+E M+ TG L              TV AERLNF RF+S FR++HRG+ F  +RTT
Sbjct: 421  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 480

Query: 1503 TVRKLLPESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVL 1682
            +VRKLLPESWGFLCPVHTPDG PCGLLNH+T  C++ +  D+ G+++D  K+R ++  VL
Sbjct: 481  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 540

Query: 1683 IDLGMIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDL 1862
            I +GMIPSLP++ + GPP  L++LLDGRV+G + SS+I   V  +R  K+   S IP+DL
Sbjct: 541  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 600

Query: 1863 EVGYIPCSFSGAYPGLFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDG 2036
            EVGY+P S  GAYPGL+LF+SP +FVRPV+  S+   E+   ELIGPFEQ FMEI+C DG
Sbjct: 601  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 660

Query: 2037 GNGGRK 2054
            G+GGR+
Sbjct: 661  GDGGRR 666


>ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
            isoform X1 [Citrus sinensis]
          Length = 1175

 Score =  662 bits (1708), Expect = 0.0
 Identities = 330/666 (49%), Positives = 461/666 (69%), Gaps = 6/666 (0%)
 Frame = +3

Query: 75   MDSKESVNVRVYEDLVSPHVDSFNYFLERGLDSAVLNLRSVEIRQS--GNKLRMWLERPC 248
            M  K+S +     +LV  H++SF+Y L+ GL     ++++V +  S    +L++ +  P 
Sbjct: 1    MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHVKTVFVHDSFTNKRLKISVGNPE 60

Query: 249  IFSPDKENAEGRHEQRLMPYECRQAGISYKGRFYLDVCFQWNDG--VVIREQCQFGRIPI 422
            IF P KE         L+P+ECRQA ISY G+   DV FQ+ D    V+RE+  FG+ P+
Sbjct: 61   IFPPQKEQGSKTLRDALLPFECRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPV 120

Query: 423  MLRSSLCHLKDLGPHQLVGLREEPTEVGGYFICNGYERLIRLLIAPKRNHPLAVERNTYR 602
            ML++  CHL+     +LV L+EE  E+GGYFI NG ER+ R +I PK+N+P+++ R+++R
Sbjct: 121  MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 180

Query: 603  NRGRDYTDKAVVVRCTRTDQSSVTARLYYLQHGSASIGFSLRRREYLIPVGVILKALIDV 782
            +R   YTDKAVV+RC R DQSSVT +LYYL +GS  +GF L+ +EYL+PVG++LKAL+D 
Sbjct: 181  DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 240

Query: 783  TDAEIFQQLASVCNSLSQGQKGVVGTEFVTQRAIIILDEVKQYNIYTQREALKFIGERFK 962
             D EIF  L    +   + +KG VG+  V++R  IIL EV+  ++ T+ + L+ IGE F+
Sbjct: 241  NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 300

Query: 963  TVLEGMERKSDIAVGEALIKEYILVHLDSFCDKFNFLIFMLQKLFALVDGTAAPDNPDTL 1142
             V++G++ +S  AV E +I++YI VHL+   DKFN LIFMLQKLF+LVD T+  DNPD+L
Sbjct: 301  PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 360

Query: 1143 QNQEALLPGHLLTISIKEKLQEWLFKVKSVLDKEINDDKQKFDLQDMARVKKAMEKIYTD 1322
            QNQE LLPGHL+TI +KEKL++WL K K ++  EI ++ +KFD  ++A +KK MEK  + 
Sbjct: 361  QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 420

Query: 1323 GVGRSVENMINTGNLTXXXXXXXXXXXXMTVVAERLNFFRFLSHFRSIHRGSYFTQMRTT 1502
             +G S+E M+ TG L              TV AERLNF RF+S FR++HRG+ F  +RTT
Sbjct: 421  QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 480

Query: 1503 TVRKLLPESWGFLCPVHTPDGTPCGLLNHLTVNCKITTDMDAEGHVKDPVKIRKALTTVL 1682
            +VRKLLPESWGFLCPVHTPDG PCGLLNH+T  C++ +  D+ G+++D  K+R ++  VL
Sbjct: 481  SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 540

Query: 1683 IDLGMIPSLPRVSQVGPPEYLAILLDGRVMGFLSSSKITLAVEQIRSYKLKKGSGIPEDL 1862
            I +GMIPSLP++ + GPP  L++LLDGRV+G + SS+I   V  +R  K+   S IP+DL
Sbjct: 541  IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 600

Query: 1863 EVGYIPCSFSGAYPGLFLFSSPSRFVRPVK--SIIDTENPCTELIGPFEQAFMEIKCIDG 2036
            EVGY+P S  GAYPGL+LF+SP +FVRPV+  S+   E+   ELIGPFEQ FMEI+C DG
Sbjct: 601  EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 660

Query: 2037 GNGGRK 2054
            G+GGR+
Sbjct: 661  GDGGRR 666