BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00012376
         (748 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...   358   1e-96
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...   352   7e-95
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...   352   7e-95
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...   350   2e-94
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...   350   2e-94
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...   348   1e-93
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...   348   1e-93
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...   347   2e-93
gb|AAX19931.1| viral replicase [Nandina mosaic virus]                 322   1e-85
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...   281   2e-73
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...   245   1e-62
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   219   6e-55
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             194   3e-47
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   194   3e-47
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   190   4e-46
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   189   8e-46
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 187   4e-45
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   187   4e-45
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 186   9e-45
ref|YP_002341559.1| replication-associated protein [Schlumberger...   175   2e-41

>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score =  358 bits (919), Expect = 1e-96
 Identities = 176/248 (70%), Positives = 194/248 (78%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            A+H LG +R GGPLLP +       E           ++A+  S+     D  P   +P 
Sbjct: 483  AIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPE 542

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+ATLP HW    L ++L+T
Sbjct: 543  TLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILST 602

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LRSLNRFPTPW PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN    LAISV
Sbjct: 603  LRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISV 662

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S
Sbjct: 663  IHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSS 722

Query: 723  KSPVVIFD 746
             SPVVIFD
Sbjct: 723  HSPVVIFD 730


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  352 bits (903), Expect = 7e-95
 Identities = 176/248 (70%), Positives = 195/248 (78%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+ R GGPLLP+       +E                  ++   +   P   DP+
Sbjct: 480  ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPE--PPHKTTQSSDLPHPQDPS 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  352 bits (903), Expect = 7e-95
 Identities = 176/248 (70%), Positives = 195/248 (78%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+ R GGPLLP+       +E                  ++   +   P   DP+
Sbjct: 480  ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPE--PPHKTTQSSDLPHPQDPS 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  350 bits (899), Expect = 2e-94
 Identities = 175/248 (70%), Positives = 194/248 (78%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+ R GGPLLP+       +E                  ++   +   P   DP+
Sbjct: 480  ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPE--PPHKTTQSSDLPHPQDPS 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISV
Sbjct: 598  LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  350 bits (899), Expect = 2e-94
 Identities = 175/248 (70%), Positives = 194/248 (78%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+ R GGPLLP+       +E                  ++   +   P   DP+
Sbjct: 480  ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPE--PPHKTTQSSDLPHPQDPS 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISV
Sbjct: 598  LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  348 bits (893), Expect = 1e-93
 Identities = 174/248 (70%), Positives = 193/248 (77%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+ R G PLLP+       +E                  ++   +   P   DP+
Sbjct: 480  ALHELGNARCGAPLLPKGPAKLTRAEPCPDLPAEPQAVPE--PPHKTTQSSDLPHPQDPS 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LR LNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISV
Sbjct: 598  LRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  348 bits (892), Expect = 1e-93
 Identities = 174/248 (70%), Positives = 194/248 (78%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+ R GGPLLP+       +E                  ++   +   P   DP+
Sbjct: 480  ALHELGNARCGGPLLPKGPAKLTRAEPCPDLPAEPQAVPE--PPHKTTQSSDLPHPQDPS 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P ++++L+T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LRSLNR+PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score =  347 bits (891), Expect = 2e-93
 Identities = 174/248 (70%), Positives = 192/248 (77%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG+TR GGPLLP+  P +  +                         D  P   DP 
Sbjct: 480  ALHELGNTRCGGPLLPK-GPAKLTTVEPCPDLPAENSANPEPPRKTTQTLD-LPHPEDPT 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++++T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIIST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LRS NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN   NLAISV
Sbjct: 598  LRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISV 657

Query: 543  IHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 722
            IHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS
Sbjct: 658  IHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS 717

Query: 723  KSPVVIFD 746
            + PVVIFD
Sbjct: 718  RCPVVIFD 725


>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score =  322 bits (824), Expect = 1e-85
 Identities = 164/249 (65%), Positives = 185/249 (74%), Gaps = 1/249 (0%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALHELG++R GGP+LP+                      +N T    D   +       +
Sbjct: 485  ALHELGNSRCGGPMLPK--------------------RSSNHTHTSSDLLRRRHPRQQRS 524

Query: 183  TLPWVAWLP-KLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLT 359
            T P +  L  K   +GFEALEIQTDPSTG+ IMPI D R+LP+A +P HW+ P   K++ 
Sbjct: 525  TNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIA 584

Query: 360  TLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAIS 539
            TLR+LNRFPTPW PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N   + AIS
Sbjct: 585  TLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAIS 644

Query: 540  VIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVC 719
            VIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV 
Sbjct: 645  VIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVS 704

Query: 720  SKSPVVIFD 746
            S+ PVVIFD
Sbjct: 705  SRGPVVIFD 713


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score =  281 bits (718), Expect = 2e-73
 Identities = 152/254 (59%), Positives = 171/254 (67%), Gaps = 6/254 (2%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXX---TKANTTSNQGDHADQAPVNS 173
            ALH LGS R  G  LP  +P +   E              TK   T N    A+      
Sbjct: 455  ALHVLGSLRTDGESLP--SPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTP 512

Query: 174  --DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-L 344
              DP TLPW AWLP L ALGFEA EIQTDP     IMPI D++ LP  T  E+ +     
Sbjct: 513  LPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPF 572

Query: 345  SKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTA 524
             KV+ TL+ LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE    
Sbjct: 573  DKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSET 632

Query: 525  NLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFE 704
             L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFE
Sbjct: 633  RLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFE 692

Query: 705  RAFVCSKSPVVIFD 746
            RAFV S +PVVIFD
Sbjct: 693  RAFVSSTAPVVIFD 706


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score =  245 bits (625), Expect = 1e-62
 Identities = 123/192 (64%), Positives = 141/192 (73%)
 Frame = +3

Query: 3    ALHELGSTRLGGPLLPRIAPDEQDSEXXXXXXXXXXXTKANTTSNQGDHADQAPVNSDPA 182
            ALH+LG+ R GGPLLP+  PD   +              A   S +   A   P   DP 
Sbjct: 480  ALHKLGNARCGGPLLPQ-RPDTS-TVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPT 537

Query: 183  TLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTT 362
            TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPI D ++LP+A  P HW  P + ++++T
Sbjct: 538  TLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIIST 597

Query: 363  LRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISV 542
            LRSLNR+PTPW PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+   NLAISV
Sbjct: 598  LRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISV 657

Query: 543  IHGAGGSGKSQA 578
            IHGAGGSGKSQA
Sbjct: 658  IHGAGGSGKSQA 669


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  219 bits (559), Expect = 6e-55
 Identities = 105/193 (54%), Positives = 137/193 (70%)
 Frame = +3

Query: 168  NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 347
            N+  A LPW  W+PKLNALGFEA E Q  P T  +IMPI D+    K  +P H       
Sbjct: 612  NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667

Query: 348  KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 527
            ++L  L++L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  ++    
Sbjct: 668  ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727

Query: 528  LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 707
            + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728  VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787

Query: 708  AFVCSKSPVVIFD 746
            A++ + +P +I D
Sbjct: 788  AYLQTNAPSIIMD 800


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  194 bits (493), Expect = 3e-47
 Identities = 102/204 (50%), Positives = 129/204 (63%), Gaps = 1/204 (0%)
 Frame = +3

Query: 138  QGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 314
            +G      PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + 
Sbjct: 535  EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594

Query: 315  LPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 494
            +  H        V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKET
Sbjct: 595  IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648

Query: 495  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPH 674
            QT+  E +   + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P 
Sbjct: 649  QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708

Query: 675  NPPEQFRTFERAFVCSKSPVVIFD 746
              PE+ +T+ERAF    SPVV+FD
Sbjct: 709  VRPEKIKTYERAFTGVSSPVVLFD 732


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  194 bits (493), Expect = 3e-47
 Identities = 102/204 (50%), Positives = 129/204 (63%), Gaps = 1/204 (0%)
 Frame = +3

Query: 138  QGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 314
            +G      PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + 
Sbjct: 535  EGQKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594

Query: 315  LPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 494
            +  H        V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKET
Sbjct: 595  IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648

Query: 495  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPH 674
            QT+  E +   + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P 
Sbjct: 649  QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708

Query: 675  NPPEQFRTFERAFVCSKSPVVIFD 746
              PE+ +T+ERAF    SPVV+FD
Sbjct: 709  VRPEKIKTYERAFTGVSSPVVLFD 732


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  190 bits (483), Expect = 4e-46
 Identities = 102/187 (54%), Positives = 127/187 (67%)
 Frame = +3

Query: 186  LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 365
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 366  RSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 545
              L R PTP+ P+  RARA+TSDVKN R G  L ++ + W      L E     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 546  HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 725
            HGAGGSGKSQALQTL++ NP+L I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 726  SPVVIFD 746
            +P+VIFD
Sbjct: 881  TPIVIFD 887


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  189 bits (480), Expect = 8e-46
 Identities = 105/210 (50%), Positives = 131/210 (62%)
 Frame = +3

Query: 117  KANTTSNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVR 296
            K   TS +GD+ +       P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++
Sbjct: 685  KQGVTSEEGDYVE-------PDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIK 736

Query: 297  DLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 476
             LPK + PE  N P L K+L    S  R PTP+ P   RA+A++SDVKNSR G  L ++ 
Sbjct: 737  SLPKCS-PEKVN-PSLLKMLN---SQARAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQG 791

Query: 477  QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 656
            + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDW
Sbjct: 792  KDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDW 851

Query: 657  LKKLPHNPPEQFRTFERAFVCSKSPVVIFD 746
            LKKLP  P +Q +TFE+A +    P VIFD
Sbjct: 852  LKKLPTFPADQIKTFEKALLAPTKPTVIFD 881


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  187 bits (474), Expect = 4e-45
 Identities = 104/210 (49%), Positives = 130/210 (61%)
 Frame = +3

Query: 117  KANTTSNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVR 296
            K   TS +GD+ +       P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++
Sbjct: 685  KQGVTSEEGDYVE-------PDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIK 736

Query: 297  DLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 476
             LPK + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L ++ 
Sbjct: 737  SLPKCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQG 791

Query: 477  QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 656
            + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDW
Sbjct: 792  KDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDW 851

Query: 657  LKKLPHNPPEQFRTFERAFVCSKSPVVIFD 746
            LKKLP  P +Q +TFE+A +    P VIFD
Sbjct: 852  LKKLPTFPADQIKTFEKALLAPIKPTVIFD 881


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  187 bits (474), Expect = 4e-45
 Identities = 105/210 (50%), Positives = 131/210 (62%)
 Frame = +3

Query: 117  KANTTSNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVR 296
            K + TS +GD  +       P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+
Sbjct: 685  KQSVTSEEGDCVE-------PDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVK 736

Query: 297  DLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 476
             LPK + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L ++ 
Sbjct: 737  SLPKCS-PEKVN-PSLLKMLDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQG 791

Query: 477  QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 656
            + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDW
Sbjct: 792  KDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDW 851

Query: 657  LKKLPHNPPEQFRTFERAFVCSKSPVVIFD 746
            LKKLP  P +Q +TFE+A +    P VIFD
Sbjct: 852  LKKLPTFPADQIKTFEKALLAPTKPTVIFD 881


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  186 bits (471), Expect = 9e-45
 Identities = 104/210 (49%), Positives = 131/210 (62%)
 Frame = +3

Query: 117  KANTTSNQGDHADQAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVR 296
            K + TS +GD  +       P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+
Sbjct: 685  KQSVTSEEGDCVE-------PDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVK 736

Query: 297  DLPKATLPEHWNEPGLSKVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRET 476
             LPK + PE   +P L K+L       R PTP+ P   RA+A++SDVKNSR G  L ++ 
Sbjct: 737  SLPKCS-PEKV-DPSLLKMLDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQG 791

Query: 477  QTWKETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDW 656
            + W      L EN    LAISVIHGAGGSGKS+ALQ  L+ NPD  + +VLPTNELRLDW
Sbjct: 792  KDWGHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDW 851

Query: 657  LKKLPHNPPEQFRTFERAFVCSKSPVVIFD 746
            LKKLP  P +Q +TFE+A +    P VIFD
Sbjct: 852  LKKLPTFPADQIKTFEKALLAPTKPTVIFD 881


>ref|YP_002341559.1| replication-associated protein [Schlumbergera virus X]
            gi|217316801|gb|AAR11537.2| replication-associated
            protein [Schlumbergera virus X]
          Length = 1545

 Score =  175 bits (443), Expect = 2e-41
 Identities = 89/193 (46%), Positives = 121/193 (62%)
 Frame = +3

Query: 168  NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 347
            +++ + LPW AWLP LN  GF+  + Q +P+ G +I PI D++ L K       + PG++
Sbjct: 710  HAETSVLPWQAWLPILNVAGFKGTQSQVNPNDGSLISPILDIKKLEKTPA----SHPGIN 765

Query: 348  KVLTTLRSLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 527
            +VLT +   +R PTP+ PD  RA+AF SDVKN R G  L  +++ W E  +  TE     
Sbjct: 766  EVLTCI---HRLPTPFTPDPLRAKAFGSDVKNLRIGALLKHQSKEWLEAFSRKTEMPPRT 822

Query: 528  LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 707
            + +SVIHG GGSGKS ALQ  LR NP+  I V+LPTNELRLDW +KLP   P   +TFE+
Sbjct: 823  IGLSVIHGTGGSGKSHALQDFLRNNPEERITVILPTNELRLDWQRKLPQAHPNSLKTFEK 882

Query: 708  AFVCSKSPVVIFD 746
            + +   S VVI D
Sbjct: 883  SLLVGASSVVIMD 895