BLASTX nr result
ID: Ephedra27_contig00012335
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00012335
(1776 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 152 3e-34
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 152 6e-34
ref|XP_001766256.1| the plant-specific RNA polymerase IV largest... 151 1e-33
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub... 150 2e-33
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 150 2e-33
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su... 148 6e-33
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su... 148 6e-33
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su... 148 6e-33
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub... 147 1e-32
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 147 1e-32
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub... 146 2e-32
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 146 3e-32
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 146 3e-32
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 146 3e-32
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 145 7e-32
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su... 144 9e-32
gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, pu... 144 1e-31
gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus pe... 142 4e-31
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 142 4e-31
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub... 141 8e-31
>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
max]
Length = 1369
Score = 152 bits (385), Expect = 3e-34
Identities = 116/350 (33%), Positives = 179/350 (51%), Gaps = 6/350 (1%)
Frame = +1
Query: 742 LCKSVLKRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIR 921
+CKS+ R S +R K S D C +C A ++ F+++S + R+ +
Sbjct: 14 VCKSI--RHKSKGVRLIYGTKRSND--CNYCSA-----YPSMKFRVSSNDLFRRTAIIVE 64
Query: 922 VEARQRGKTGNYAKDCLKSIS-GREVDDNMPTKNVTLPPARAREILRQVD----EKIVPR 1086
V+A ++ D I + ++N + V L PA+ +L VD EK +PR
Sbjct: 65 VKASKKTLGTEIPADYWNFIPCDAQQEENYVNRRV-LSPAQVLNLLNGVDPDFIEKYIPR 123
Query: 1087 PDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVT 1263
+ ++ VTPN HR+ E + GS L+ DDRT++ K L+ F RG
Sbjct: 124 KNLLYLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTPNELSSR 179
Query: 1264 VFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSD 1443
V D ++I +L D + +D ++ GE+ + SGL+W+KD LGKR+D
Sbjct: 180 VLDCLRI----SKLNPDKTPNSIFAD----IQQRKIGENA-CNSSGLRWIKDVVLGKRND 230
Query: 1444 FSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRR 1623
SLR VV+GDP+L+L E+GI +AE L VSE VNR NR K+ R+ + + R
Sbjct: 231 SSLRTVVVGDPDLELSEVGIPCHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCR 290
Query: 1624 NGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
NG L+IGD R + DGD ++INR P++H+HS+I+ ++VL
Sbjct: 291 NGSKVHLYKKEDLQIGDKIYRPLADGDKVLINRPPSIHQHSMIALTVRVL 340
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 152 bits (383), Expect = 6e-34
Identities = 117/364 (32%), Positives = 180/364 (49%), Gaps = 21/364 (5%)
Frame = +1
Query: 745 CKSVLKRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRK------V 906
CKSV RQ E ++ C +C K + FKL++ + +K V
Sbjct: 101 CKSV--RQELWGKVEDPTSDYNRPKGCRYCFGSLKDWYPPMRFKLSTTDMFKKSMIMVEV 158
Query: 907 YQTIRVEARQRGKTGNYAKDCLKSISGREVDDNM---PTKNVTLPPARAREILRQVD--- 1068
+ + + ++R G D I E + P + + L A+ +L+ +D
Sbjct: 159 KENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNRKI-LTHAQVHYLLKDIDPKF 217
Query: 1069 -EKIVPRPDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGF 1242
+K VP DS F+ VTPNSHR+ E SF G L D+RT+A K ++ F RG
Sbjct: 218 LKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDF----RGT 273
Query: 1243 KFREDVTVFDTMKIVHSLGRLTN------DYFQCNKLSDTCPPVENVNHGESQNSHHSGL 1404
V D +KI ++ + +Y+Q K+ DT + SGL
Sbjct: 274 ANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQ-KKIKDTA-------------TSSSGL 319
Query: 1405 KWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKI-REYN 1581
+W+KD LGKRSD R VV+GDPN++L EIGI +AERL +SE ++ +N +K+
Sbjct: 320 RWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCY 379
Query: 1582 NHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFK 1761
H + KG + RR G L R + +L +GD R + DGD++++NR P++H+HSLI+
Sbjct: 380 LHLVEKGEIY-VRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALS 438
Query: 1762 IKVL 1773
+K+L
Sbjct: 439 VKLL 442
Score = 86.7 bits (213), Expect = 3e-14
Identities = 39/99 (39%), Positives = 59/99 (59%)
Frame = +1
Query: 37 ENMSEVLVPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGE 216
E E+ +P L GI ++ ++ I I++ TV ++ DP+ GLPNP +C+TCG
Sbjct: 4 EQDGELPIPSGLLTGINFSVSNQQDIENIAVI-TVDAANEVSDPKLGLPNPSYQCTTCGA 62
Query: 217 SDVTVCEGHFGCIASPRVIYNPLLISDVVEILNNICPYC 333
S + CEGHFG I P I +P +S+V ++LN +CP C
Sbjct: 63 SSLKFCEGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGC 101
>ref|XP_001766256.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens] gi|162682470|gb|EDQ68888.1| the
plant-specific RNA polymerase IV largest subunit-like
protein [Physcomitrella patens]
Length = 2458
Score = 151 bits (381), Expect = 1e-33
Identities = 164/623 (26%), Positives = 281/623 (45%), Gaps = 53/623 (8%)
Frame = +1
Query: 61 PLARLKGIGIDIATKEVIARISMKPTVQNGKD----LMDPRFGLPNPEGKCSTCGESDVT 228
P A L G+ I +AT I S+ + KD L+DPR GLP + +C+TCG ++
Sbjct: 237 PTADLVGLQIGLATTSEILGHSVIES--RSKDTLISLVDPRLGLPAEDERCATCGGTNYD 294
Query: 229 VCEGHFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKKMKEKRCKVKSLLFLDADDNR 408
C GHF + + I++P I V +L IC C PK K K ++ A+ +
Sbjct: 295 ECTGHFAHVKLTQPIFHPNYIRCVQRVLQKICLACGVPKVKKMKSFSEEA-----ANLKQ 349
Query: 409 SNVTINEKSCKFKHQHVTNEKRNGCKRQDTSVDAEMVILGSSDEEEGNPRCHR------- 567
+ I+ + +H + + ++ V VIL SSDEEE R
Sbjct: 350 NFRDIDSEDVGGNGEHPVLLEADAIEKDADDV----VILLSSDEEEYPRDILRVVPSGPM 405
Query: 568 -------KESSLKTLKLKRDKPARYQPVRNTKRNVNYSEDLHNKGAAVKKDRATRKGSGL 726
ES++ L + ++ + N +V+ + K ++ KK +T+ +
Sbjct: 406 DFLIRSTNESAIADLPQLKSYKSKSKAHANGFSHVDVTRKSTRKSSS-KKSSSTQNPVKI 464
Query: 727 DRKRVLCKSVLKRQNSANLRESNPMKASQDTN-CVFCQADGKKPEVAVSFKLASEIINRK 903
+ VL N+ LR + P+ DTN C +C P+ + RK
Sbjct: 465 YKGTPAGLDVL---NADTLRTAEPL----DTNTCPYCSPG--YPDYRHILVKILPVKGRK 515
Query: 904 ---VYQTIRVEAR--QRGKTGNYAKDCLKSISGREVDDNMPT-KNVTLPPARAREILRQV 1065
V Q I +E + +G+ D I G +N K+ L P A IL+++
Sbjct: 516 KNDVSQIILLEVQGSDKGEKFLLPHDFWSFIKGAAYPENEEVPKSHVLSPLEALSILKKI 575
Query: 1066 DEK---------IVPRPDSFFIEFIAVTPNSHRINE-RHQSFKGSVLTPDDR-TKALKLL 1212
+ +V RP+ ++ + + PN R + ++ S +V DR T+ L+ L
Sbjct: 576 SDTAIGKLGMNGLVARPEGLIMKCVPIPPNCTRTTDYKYVSNTTAVRFGTDRVTRTLQNL 635
Query: 1213 MQFIERIRGFKFREDVT--VFDTMKIVHSLGRLTNDYFQCNKLSDTCP---PVENVNHGE 1377
+ I RI+ + + + D +K++ L T +Y + P P++ +G
Sbjct: 636 VNEIGRIQRTRTGKIMKRGQRDEVKVLQVL---TAEYLREKGAPKAVPGKEPLKKDRNGR 692
Query: 1378 --SQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNR 1551
Q+ H W+ LGK +++ RAVV GDP+L ++ IG+ E+A++LTV E +
Sbjct: 693 FTKQDDHRWTKDWISQNYLGKGGNYTARAVVAGDPSLAIETIGVPLEIAQKLTVPERATK 752
Query: 1552 FNRRKIREYNNHRITKGLSHNTRRNGV--LSRGMDASQ--------LKIGDLYERQITDG 1701
+NR K++EY + T+ L + + G + R +A Q ++IGD+ R I DG
Sbjct: 753 WNRSKLQEYVDR--TQMLQQGSGKPGATRIVRNEEAFQVWANSTHTVQIGDVIHRNIQDG 810
Query: 1702 DLIIINRTPTLHRHSLISFKIKV 1770
D + +NR P++H+HSL++ K++V
Sbjct: 811 DFVYVNRPPSVHKHSLMALKVQV 833
>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Setaria italica] gi|514785102|ref|XP_004970757.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X4 [Setaria italica]
Length = 1451
Score = 150 bits (379), Expect = 2e-33
Identities = 112/361 (31%), Positives = 178/361 (49%), Gaps = 29/361 (8%)
Frame = +1
Query: 778 NLRESNPMKASQD----TNCVFCQADGKKPEVAVSFKLASE----IINRKVYQT------ 915
NLRE+ +K + C +C DG K +V FK S + K++++
Sbjct: 99 NLRENIDLKTLERETVRATCKYCSKDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMER 158
Query: 916 --IRVEARQRGKTGNYAKDCLKSISGREVDDNMPTKN---------VTLPPARAREILRQ 1062
I EA RG + K L+ + ++ D +P++N + L P + +L++
Sbjct: 159 ISIVAEAIDRGSNKSKGKGSLEGLP-QDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKK 217
Query: 1063 VDEKI----VPRPDSFFIEFIAVTPNSHRINERHQSFKGSVLTPDDRTKALKLLMQFIER 1230
D ++ V R + F+ + VTPN HR+ E LT DDRTKA K ++ +R
Sbjct: 218 SDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKR 277
Query: 1231 IRGFKFREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKW 1410
I ++ +V + + + ++ + +KL VE ++ G+KW
Sbjct: 278 IDDYRQHPQFSVLASSLVSSRV----SECLKSSKLYSKKTDVET-------STDTYGMKW 326
Query: 1411 LKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHR 1590
LKD L KRSD + R++++GDP ++L EIGI LA L VSE V+ +N I N
Sbjct: 327 LKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLH 386
Query: 1591 ITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKV 1770
+ RRNG L A+QL++GD+ R + DGDLI+INR P++H+HSLI+ K+
Sbjct: 387 LLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKI 446
Query: 1771 L 1773
L
Sbjct: 447 L 447
Score = 70.5 bits (171), Expect = 2e-09
Identities = 33/92 (35%), Positives = 47/92 (51%)
Frame = +1
Query: 58 VPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCE 237
+P A L I D+ T + ++S ++ D+ P+ GLPN +C TCG C+
Sbjct: 7 LPRAILNAITFDLMTSTDMEKLS-SISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCD 65
Query: 238 GHFGCIASPRVIYNPLLISDVVEILNNICPYC 333
GHFG ++NP I +VV LN ICP C
Sbjct: 66 GHFGVTKLAATVHNPYFIDEVVHFLNQICPGC 97
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 150 bits (379), Expect = 2e-33
Identities = 107/320 (33%), Positives = 160/320 (50%), Gaps = 16/320 (5%)
Frame = +1
Query: 862 AVSFKLASEIINRKVYQTIRVEARQRGKTGNYAKDCLKSISGREVD----DNMPTKNVTL 1029
A+ F ++SE I RK I + +R + + K ++ D D +N+T
Sbjct: 133 AMKFSVSSEEIFRK--NVIIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQQEENITR 190
Query: 1030 PPARARE------ILRQVD----EKIVPRPDSFFIEFIAVTPNSHRINERHQSFK-GSVL 1176
P R +L +D K V + DS F+ +VTPN HR+ E +F G L
Sbjct: 191 PNQRVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSNGQRL 250
Query: 1177 TPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTNDYFQCN-KLSDTCPP 1353
DDRT+A K ++ F + FR + T KI +DY K++D+
Sbjct: 251 VFDDRTRAYKKMVDFRGIAKELSFRV-LDCLKTSKINPDKSVNNDDYMALQRKMNDS--- 306
Query: 1354 VENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTV 1533
+S SGL+W+KD LGKR+D S R VV+GDPN++ EIGI +AERL +
Sbjct: 307 ----------SSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQI 356
Query: 1534 SETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLII 1713
SE + +N K+ R+ + + RR G L R +L+IGD+ R + DGD ++
Sbjct: 357 SEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVL 416
Query: 1714 INRTPTLHRHSLISFKIKVL 1773
INR P++H+HSLI+ +KVL
Sbjct: 417 INRPPSIHQHSLIALSVKVL 436
Score = 86.7 bits (213), Expect = 3e-14
Identities = 41/103 (39%), Positives = 60/103 (58%)
Frame = +1
Query: 58 VPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCE 237
+P A L I ++T+ ++S+ T+ ++ D + GLPNP +CSTCG D+ CE
Sbjct: 12 LPSALLTAITFGVSTEAEKEKLSVL-TIDTVSEVTDSKLGLPNPTNQCSTCGSKDLKSCE 70
Query: 238 GHFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKKMKEKRC 366
GHFG I P I +P +S+VV ILN +CP C +K + RC
Sbjct: 71 GHFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESKVRC 113
>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Glycine max]
Length = 1455
Score = 148 bits (374), Expect = 6e-33
Identities = 116/351 (33%), Positives = 176/351 (50%), Gaps = 7/351 (1%)
Frame = +1
Query: 742 LCKSVLKRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIR 921
+CKS+ + A L K S D C +C ++ F+++S + R+ +
Sbjct: 100 VCKSIRHKSKGARLIYGT--KRSND--CNYCSV-----YPSMQFRVSSNDLFRRTAIIVE 150
Query: 922 VEARQRGKTGNYAKDCLKSIS-GREVDDNMPTKNVTLPPARAREILRQVD----EKIVPR 1086
V+A ++ D I + ++N + V L P + +L VD EK +PR
Sbjct: 151 VKASKKTLGTEIPADFWNFIPCDAQQEENYVNRRV-LSPVQVNYLLNDVDPDFIEKYIPR 209
Query: 1087 PDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVT 1263
+ + VTPN HR+ E + GS L+ DDRT++ K L+ F RG
Sbjct: 210 KNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSR 265
Query: 1264 VFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSD 1443
V D ++I +L D + +D ++ GE+ + SGL+W+KD LGKR+D
Sbjct: 266 VLDCLRI----SKLNPDKTPNSIFAD----IQQRKIGENA-FNSSGLRWIKDVVLGKRND 316
Query: 1444 FSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTR 1620
S R VV+GDP+L+L EIGI +AE L VSE VNR NR K+ H + KG N
Sbjct: 317 SSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVC 375
Query: 1621 RNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
R G + L+IGD + R + DGD ++INR P++H+HS+IS ++VL
Sbjct: 376 RKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVL 426
Score = 72.0 bits (175), Expect = 8e-10
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +1
Query: 61 PLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCEG 240
P +K I D+ T+E I IS+ G+ + GLPN +C+TCG D CEG
Sbjct: 12 PSVVIKAIKFDVLTEEDIENISVLEINAAGQ-VTGSNLGLPNASDECATCGTKDKKFCEG 70
Query: 241 HFGCIASPRVIYNPLLISDVVEILNNICPYC 333
HFG I P I +P + ++ ILN ICP C
Sbjct: 71 HFGVIKFPTPILHPYFMLEIAHILNKICPVC 101
>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Glycine max]
Length = 1457
Score = 148 bits (374), Expect = 6e-33
Identities = 116/351 (33%), Positives = 176/351 (50%), Gaps = 7/351 (1%)
Frame = +1
Query: 742 LCKSVLKRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIR 921
+CKS+ + A L K S D C +C ++ F+++S + R+ +
Sbjct: 100 VCKSIRHKSKGARLIYGT--KRSND--CNYCSV-----YPSMQFRVSSNDLFRRTAIIVE 150
Query: 922 VEARQRGKTGNYAKDCLKSIS-GREVDDNMPTKNVTLPPARAREILRQVD----EKIVPR 1086
V+A ++ D I + ++N + V L P + +L VD EK +PR
Sbjct: 151 VKASKKTLGTEIPADFWNFIPCDAQQEENYVNRRV-LSPVQVNYLLNDVDPDFIEKYIPR 209
Query: 1087 PDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVT 1263
+ + VTPN HR+ E + GS L+ DDRT++ K L+ F RG
Sbjct: 210 KNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSR 265
Query: 1264 VFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSD 1443
V D ++I +L D + +D ++ GE+ + SGL+W+KD LGKR+D
Sbjct: 266 VLDCLRI----SKLNPDKTPNSIFAD----IQQRKIGENA-FNSSGLRWIKDVVLGKRND 316
Query: 1444 FSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTR 1620
S R VV+GDP+L+L EIGI +AE L VSE VNR NR K+ H + KG N
Sbjct: 317 SSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVC 375
Query: 1621 RNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
R G + L+IGD + R + DGD ++INR P++H+HS+IS ++VL
Sbjct: 376 RKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVL 426
Score = 72.0 bits (175), Expect = 8e-10
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +1
Query: 61 PLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCEG 240
P +K I D+ T+E I IS+ G+ + GLPN +C+TCG D CEG
Sbjct: 12 PSVVIKAIKFDVLTEEDIENISVLEINAAGQ-VTGSNLGLPNASDECATCGTKDKKFCEG 70
Query: 241 HFGCIASPRVIYNPLLISDVVEILNNICPYC 333
HFG I P I +P + ++ ILN ICP C
Sbjct: 71 HFGVIKFPTPILHPYFMLEIAHILNKICPVC 101
>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Glycine max]
Length = 1458
Score = 148 bits (374), Expect = 6e-33
Identities = 116/351 (33%), Positives = 176/351 (50%), Gaps = 7/351 (1%)
Frame = +1
Query: 742 LCKSVLKRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIR 921
+CKS+ + A L K S D C +C ++ F+++S + R+ +
Sbjct: 100 VCKSIRHKSKGARLIYGT--KRSND--CNYCSV-----YPSMQFRVSSNDLFRRTAIIVE 150
Query: 922 VEARQRGKTGNYAKDCLKSIS-GREVDDNMPTKNVTLPPARAREILRQVD----EKIVPR 1086
V+A ++ D I + ++N + V L P + +L VD EK +PR
Sbjct: 151 VKASKKTLGTEIPADFWNFIPCDAQQEENYVNRRV-LSPVQVNYLLNDVDPDFIEKYIPR 209
Query: 1087 PDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVT 1263
+ + VTPN HR+ E + GS L+ DDRT++ K L+ F RG
Sbjct: 210 KNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDF----RGTANELSSR 265
Query: 1264 VFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSD 1443
V D ++I +L D + +D ++ GE+ + SGL+W+KD LGKR+D
Sbjct: 266 VLDCLRI----SKLNPDKTPNSIFAD----IQQRKIGENA-FNSSGLRWIKDVVLGKRND 316
Query: 1444 FSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIRE-YNNHRITKGLSHNTR 1620
S R VV+GDP+L+L EIGI +AE L VSE VNR NR K+ H + KG N
Sbjct: 317 SSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKG-KINVC 375
Query: 1621 RNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
R G + L+IGD + R + DGD ++INR P++H+HS+IS ++VL
Sbjct: 376 RKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVL 426
Score = 72.0 bits (175), Expect = 8e-10
Identities = 36/91 (39%), Positives = 48/91 (52%)
Frame = +1
Query: 61 PLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCEG 240
P +K I D+ T+E I IS+ G+ + GLPN +C+TCG D CEG
Sbjct: 12 PSVVIKAIKFDVLTEEDIENISVLEINAAGQ-VTGSNLGLPNASDECATCGTKDKKFCEG 70
Query: 241 HFGCIASPRVIYNPLLISDVVEILNNICPYC 333
HFG I P I +P + ++ ILN ICP C
Sbjct: 71 HFGVIKFPTPILHPYFMLEIAHILNKICPVC 101
>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
[Setaria italica]
Length = 1362
Score = 147 bits (372), Expect = 1e-32
Identities = 107/342 (31%), Positives = 170/342 (49%), Gaps = 25/342 (7%)
Frame = +1
Query: 823 CVFCQADGKKPEVAVSFKLASE----IINRKVYQT--------IRVEARQRGKTGNYAKD 966
C +C DG K +V FK S + K++++ I EA RG + K
Sbjct: 29 CKYCSKDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMERISIVAEAIDRGSNKSKGKG 88
Query: 967 CLKSISGREVDDNMPTKN---------VTLPPARAREILRQVDEKI----VPRPDSFFIE 1107
L+ + ++ D +P++N + L P + +L++ D ++ V R + F+
Sbjct: 89 SLEGLP-QDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLS 147
Query: 1108 FIAVTPNSHRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIV 1287
+ VTPN HR+ E LT DDRTKA K ++ +RI ++ +V + +
Sbjct: 148 CLPVTPNCHRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLASSLVS 207
Query: 1288 HSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVI 1467
+ ++ + +KL VE ++ G+KWLKD L KRSD + R++++
Sbjct: 208 SRV----SECLKSSKLYSKKTDVET-------STDTYGMKWLKDAVLSKRSDNAFRSIMV 256
Query: 1468 GDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGM 1647
GDP ++L EIGI LA L VSE V+ +N I N + RRNG L
Sbjct: 257 GDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRNGKLMFIR 316
Query: 1648 DASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
A+QL++GD+ R + DGDLI+INR P++H+HSLI+ K+L
Sbjct: 317 KANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKIL 358
>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1687
Score = 147 bits (371), Expect = 1e-32
Identities = 106/332 (31%), Positives = 163/332 (49%), Gaps = 10/332 (3%)
Frame = +1
Query: 808 SQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIRVEARQRGKTGNYAK----DCLK 975
+Q C +C +G A+ F+++S R+ + V K N + D
Sbjct: 272 NQPKGCKYCCGNGMGRYPAMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWD 331
Query: 976 SISGREVDDNMPTKNVTLPPARAREILRQVD----EKIVPRPDSFFIEFIAVTPNSHRIN 1143
I G + L P + +L VD EK +P D + V PN HR+
Sbjct: 332 FILGDVQQEENHVNRKVLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVT 391
Query: 1144 E-RHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTN-DY 1317
E H+ G L+ D+RT+A K L+ F RG V D ++ + + N D
Sbjct: 392 EVPHRLSGGYPLSFDNRTRACKKLVDF----RGTANELSSRVLDCLRFSKASFSVINPDR 447
Query: 1318 FQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDEI 1497
N ++ ++ GE+ + SGL+W+KD LGKR+D + R VV+GDP+L+L EI
Sbjct: 448 TPVNIFTE----LQQRKVGENA-CNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEI 502
Query: 1498 GINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDL 1677
GI ++AE L VSE VNR NR+ + R+ + N RRNG L+IGD+
Sbjct: 503 GIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKEDLQIGDI 562
Query: 1678 YERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
+ R + DGD ++INR P++H+HS+I+ ++VL
Sbjct: 563 FYRPLVDGDKVLINRPPSIHQHSMIALTVRVL 594
Score = 63.5 bits (153), Expect = 3e-07
Identities = 31/70 (44%), Positives = 41/70 (58%)
Frame = +1
Query: 175 GLPNPEGKCSTCGESDVTVCEGHFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKKMK 354
GLPN C+TCG D CEGHFG I P I +P ++++ EIL ICP C K + +
Sbjct: 200 GLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPAC-KSIRQE 258
Query: 355 EKRCKVKSLL 384
+ + KSLL
Sbjct: 259 IRVKRAKSLL 268
>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
[Setaria italica]
Length = 1450
Score = 146 bits (369), Expect = 2e-32
Identities = 112/361 (31%), Positives = 179/361 (49%), Gaps = 29/361 (8%)
Frame = +1
Query: 778 NLRESNPMKASQD----TNCVFCQADGKKPEVAVSFKLASE----IINRKVYQT------ 915
NLRE+ +K + C +C +DG K +V FK S + K++++
Sbjct: 99 NLRENIDLKTLERETVRATCKYC-SDGSKLYPSVIFKTLSSPRVLLSKSKLHRSPSVMER 157
Query: 916 --IRVEARQRGKTGNYAKDCLKSISGREVDDNMPTKN---------VTLPPARAREILRQ 1062
I EA RG + K L+ + ++ D +P++N + L P + +L++
Sbjct: 158 ISIVAEAIDRGSNKSKGKGSLEGLP-QDYWDFVPSENQQLQSTMTKIILSPYQVFHMLKK 216
Query: 1063 VDEKI----VPRPDSFFIEFIAVTPNSHRINERHQSFKGSVLTPDDRTKALKLLMQFIER 1230
D ++ V R + F+ + VTPN HR+ E LT DDRTKA K ++ +R
Sbjct: 217 SDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLSDGRLTFDDRTKAYKRMVDVSKR 276
Query: 1231 IRGFKFREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKW 1410
I ++ +V + + + ++ + +KL VE ++ G+KW
Sbjct: 277 IDDYRQHPQFSVLASSLVSSRV----SECLKSSKLYSKKTDVET-------STDTYGMKW 325
Query: 1411 LKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHR 1590
LKD L KRSD + R++++GDP ++L EIGI LA L VSE V+ +N I N
Sbjct: 326 LKDAVLSKRSDNAFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLH 385
Query: 1591 ITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKV 1770
+ RRNG L A+QL++GD+ R + DGDLI+INR P++H+HSLI+ K+
Sbjct: 386 LLAKEELLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKI 445
Query: 1771 L 1773
L
Sbjct: 446 L 446
Score = 70.5 bits (171), Expect = 2e-09
Identities = 33/92 (35%), Positives = 47/92 (51%)
Frame = +1
Query: 58 VPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCE 237
+P A L I D+ T + ++S ++ D+ P+ GLPN +C TCG C+
Sbjct: 7 LPRAILNAITFDLMTSTDMEKLS-SISITEVSDVTSPKLGLPNGSSQCETCGSQSERDCD 65
Query: 238 GHFGCIASPRVIYNPLLISDVVEILNNICPYC 333
GHFG ++NP I +VV LN ICP C
Sbjct: 66 GHFGVTKLAATVHNPYFIDEVVHFLNQICPGC 97
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 146 bits (368), Expect = 3e-32
Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 27/365 (7%)
Frame = +1
Query: 763 RQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEII----------NRKVYQ 912
+QN + ++A+ C +C DG K ++ FK+ + N V
Sbjct: 130 KQNGETKGDGTTIQAT----CKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMD 185
Query: 913 TIRVEARQRGKTGNYAKDCLK-SISGREV-----DDNMPTK-NVT---LPPARAREILRQ 1062
+ + A + + +K+ + I ++ DDN P + NVT L P + +L++
Sbjct: 186 KMSIIAEVASRVTHKSKNKVPHEILPQDFWDFLPDDNQPPQSNVTKKILSPYQVFHMLKK 245
Query: 1063 VDEKIV----PRPDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIE 1227
+D +++ PR + F+ + VTPN HR+ E G L DDRTKA K ++
Sbjct: 246 IDPELINQVTPRRELLFLSCLPVTPNCHRVVEMPYGHSDGPRLAFDDRTKAYKRMVDVSR 305
Query: 1228 RIRGFKFREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHS-GL 1404
RI ++ V+ + + T+ +C K S + GES S + G
Sbjct: 306 RIDDYRQHPQFGVYASSAV-------TSRVMECLKSSKL---YSRKSDGESSTSTDTYGT 355
Query: 1405 KWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIR-EYN 1581
KWLKD L KRSD + R+V++GDP + L+EIG+ +LA L VSE V+ +N I + N
Sbjct: 356 KWLKDIILSKRSDNAFRSVMVGDPKINLNEIGMPMDLALNLVVSEQVSSYNFETINLKCN 415
Query: 1582 NHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFK 1761
H +TK + RRNG L A++L+IGD+ R + DGDLI++NR P++H+HSLI+
Sbjct: 416 LHLLTKEVL-LVRRNGRLIFIRKANKLEIGDIAYRPLQDGDLILVNRPPSVHQHSLIALS 474
Query: 1762 IKVLN 1776
K+L+
Sbjct: 475 AKILS 479
Score = 76.3 bits (186), Expect = 4e-11
Identities = 38/113 (33%), Positives = 62/113 (54%)
Frame = +1
Query: 25 KRPRENMSEVLVPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCS 204
+R E EV +P A+L I + T + + S ++ +D+ + + GLPN +C+
Sbjct: 25 QRMEELSLEVKMPEAKLNAIKFSLMTSSDMEKFSSVSIIEM-RDVTNAKLGLPNGAPQCA 83
Query: 205 TCGESDVTVCEGHFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKKMKEKR 363
TCG ++ C+GHFG I ++NP I +VV++LN ICP C K+ E +
Sbjct: 84 TCGFRNIRDCDGHFGVIKLAATVHNPYFIEEVVQLLNQICPGCLTLKQNGETK 136
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 146 bits (368), Expect = 3e-32
Identities = 111/343 (32%), Positives = 176/343 (51%), Gaps = 26/343 (7%)
Frame = +1
Query: 823 CVFCQADGKKPEVAVSFKLASE----IINRKVYQTI----------RVEARQRGKTGNYA 960
C +C DG K ++ FK+ + + K+++ V +R + N A
Sbjct: 41 CKYCSKDGAKLYPSIIFKMLTSPRVTLSRSKLHRNTSVIDKMSIIAEVASRVTHNSKNKA 100
Query: 961 KDCLKSISGREV-DDNMPTK-NVT---LPPARAREILRQVDEKIV----PRPDSFFIEFI 1113
+ L + D+N P++ NVT L P + +L+++D +++ PR + F+ +
Sbjct: 101 PETLPHDFWDFIPDENQPSQSNVTKKILSPYQVFHMLKKLDPELISHVTPRRELLFLSCL 160
Query: 1114 AVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVH 1290
VTPN HR+ E G L DDRTKA K ++ RI ++ VF + +
Sbjct: 161 PVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVDVSRRIDDYRQHPQFGVFASSVV-- 218
Query: 1291 SLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHS-GLKWLKDTALGKRSDFSLRAVVI 1467
T+ +C K S + GES S + G KWLKD L KRSD + R++++
Sbjct: 219 -----TSRVMECMKSSKL---YAKKSDGESSTSTDTYGTKWLKDIILSKRSDNAFRSIMV 270
Query: 1468 GDPNLQLDEIGINRELAERLTVSETVNRFNRRKIR-EYNNHRITKGLSHNTRRNGVLSRG 1644
GDP + L+EIGI +LA L VSE V+ +N I + N H +TK + RRNG L
Sbjct: 271 GDPKISLNEIGIPMDLALNLVVSEQVSYYNFETINLKCNLHLLTKEVL-LVRRNGKLIFV 329
Query: 1645 MDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
A++L+IGD+ R + DGDL+++NR P++H+HSL++ K+L
Sbjct: 330 RKANKLQIGDIAYRLLQDGDLVLVNRPPSVHQHSLVALSAKLL 372
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 146 bits (368), Expect = 3e-32
Identities = 112/357 (31%), Positives = 170/357 (47%), Gaps = 19/357 (5%)
Frame = +1
Query: 760 KRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEII--------NRKVYQT 915
KR ++A ++E C +C DG P V + I N V
Sbjct: 114 KRSDAATIQEP----------CKYCSKDGLYPSVIFKVLTSPRITLSKSKLQRNTSVMDK 163
Query: 916 IRVEARQRGKTGNYAK-DCLKSISGREVDDNMP----TKNVTLPPARAREILRQVD---- 1068
+ V A + N + + L V N P T + L P + IL+QVD
Sbjct: 164 VSVTAEVINMSKNKSSLEVLPHDYWNFVPHNQPPQPNTTKILLSPYQVFHILKQVDLELI 223
Query: 1069 EKIVPRPDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFK 1245
K PR + F+ + VTPN HR+ E F G L DDRTKA K + ++I ++
Sbjct: 224 TKFAPRRELLFLSCLPVTPNRHRVAEMPYRFSDGPSLAYDDRTKAYKRTVDASKKIDDYR 283
Query: 1246 FREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTA 1425
+V + + + +K +D ++ +N + G KWLKD
Sbjct: 284 QHPQFSVLASSFVTSRVMECLQSSKLYSKKTDKESSTDSYGTSVKKNDSY-GTKWLKDAI 342
Query: 1426 LGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIR-EYNNHRITKG 1602
L KRSD++ R++++GDP ++L EIGI +LA+ L V E V+ +N + I + N H + K
Sbjct: 343 LSKRSDYAFRSIMVGDPKIRLHEIGIPMDLAD-LFVPEHVSIYNFKSINLKCNLHLLAKE 401
Query: 1603 LSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
L RRNG L +QL+IGD+ R + DGDLI++NR P++H+HSLI+ K+L
Sbjct: 402 LLI-ARRNGKLIYVRKENQLEIGDIVYRPLQDGDLILVNRPPSVHQHSLIALSAKLL 457
Score = 81.6 bits (200), Expect = 1e-12
Identities = 41/133 (30%), Positives = 67/133 (50%)
Frame = +1
Query: 46 SEVLVPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDV 225
+E+ VP+A LK + D+ + I +S ++ D+ + GLPN +C TCG +V
Sbjct: 10 NEMDVPMAELKALKFDLLSSADIETLSSANIIE-ASDVTSAKLGLPNAAPQCVTCGSQNV 68
Query: 226 TVCEGHFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKKMKEKRCKVKSLLFLDADDN 405
C+GH G I P +Y+P + +V+ LN ICP C+ PK+ + D
Sbjct: 69 RDCDGHSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTPKQ--------------NRDTK 114
Query: 406 RSNVTINEKSCKF 444
RS+ ++ CK+
Sbjct: 115 RSDAATIQEPCKY 127
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 145 bits (365), Expect = 7e-32
Identities = 113/339 (33%), Positives = 174/339 (51%), Gaps = 8/339 (2%)
Frame = +1
Query: 781 LRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIRVEARQRGKTGNYA 960
+++ +K S+ C +C + FK++S + R+ TI VEA G+
Sbjct: 104 IKQGVRVKGSERKGCRYCFVSSSDYP-RMRFKVSSRELFRR--STIIVEAA--GELPPDY 158
Query: 961 KDCLKSISGREVDDNMPTKNVTLPPARAREILRQVDE----KIVPRPDSFFIEFIAVTPN 1128
D + + + P + V L A+ +L VD K VP S ++ VTPN
Sbjct: 159 WDFIPKDPQHDETNTNPHRKV-LSHAQVHFLLSDVDSNFITKFVPTTSSLSLDCFLVTPN 217
Query: 1129 SHRINERHQSFK-GSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRL 1305
HR+ E SF G L DDRT+A + L+ F RG V D +KI ++
Sbjct: 218 CHRVTEVMYSFNNGQSLMFDDRTRAYRKLVDF----RGTANELGSRVLDCLKI----SKI 269
Query: 1306 TNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQ 1485
+ + +S VE +S S SGL+W+KD LGKRSD R VV+GDPN++
Sbjct: 270 NKEKTGRDSIS-----VEQQKIKDSP-SRTSGLRWIKDVVLGKRSDHCFRMVVVGDPNIK 323
Query: 1486 LDEIGINRELAERLTVSETVNRFNRRKIREYNNHRI---TKGLSHNTRRNGVLSRGMDAS 1656
L EIGI R +AE++ +SE +N++N K+ + R+ +G H RRN L R
Sbjct: 324 LSEIGIPRHIAEKMQISENLNQYNFEKLFVFCQLRLGPDGRGDIH-VRRNDSLVRIRKPE 382
Query: 1657 QLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
+L++GD+ R +++GD+++INR P++H+HSLI+ KVL
Sbjct: 383 ELEMGDIIYRALSNGDVVLINRPPSIHQHSLIALTTKVL 421
Score = 83.6 bits (205), Expect = 3e-13
Identities = 38/92 (41%), Positives = 57/92 (61%)
Frame = +1
Query: 58 VPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCE 237
+P A + G+ ++++T+E +IS ++ + DP+ GLPNP +CSTCG D +C+
Sbjct: 11 LPRACITGVHLNVSTREDTEKISTL-LIETAAQVNDPKLGLPNPTSQCSTCGAQDTKLCD 69
Query: 238 GHFGCIASPRVIYNPLLISDVVEILNNICPYC 333
GHFG I P I +P +S+V ILN ICP C
Sbjct: 70 GHFGSIKFPCSILHPYYLSEVSLILNKICPAC 101
>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
[Glycine max]
Length = 1381
Score = 144 bits (364), Expect = 9e-32
Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 7/311 (2%)
Frame = +1
Query: 862 AVSFKLASEIINRKVYQTIRVEARQRGKTGNYAKDCLKSIS-GREVDDNMPTKNVTLPPA 1038
++ F+++S + R+ + V+A ++ D I + ++N + V L P
Sbjct: 54 SMQFRVSSNDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENYVNRRV-LSPV 112
Query: 1039 RAREILRQVD----EKIVPRPDSFFIEFIAVTPNSHRINERHQSFK-GSVLTPDDRTKAL 1203
+ +L VD EK +PR + + VTPN HR+ E + GS L+ DDRT++
Sbjct: 113 QVNYLLNDVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSC 172
Query: 1204 KLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQ 1383
K L+ F RG V D ++I +L D + +D ++ GE+
Sbjct: 173 KKLVDF----RGTANELSSRVLDCLRI----SKLNPDKTPNSIFAD----IQQRKIGENA 220
Query: 1384 NSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRR 1563
+ SGL+W+KD LGKR+D S R VV+GDP+L+L EIGI +AE L VSE VNR NR
Sbjct: 221 -FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNRE 279
Query: 1564 KIRE-YNNHRITKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHR 1740
K+ H + KG N R G + L+IGD + R + DGD ++INR P++H+
Sbjct: 280 KLLYCCELHLLEKG-KINVCRKGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQ 338
Query: 1741 HSLISFKIKVL 1773
HS+IS ++VL
Sbjct: 339 HSMISLTVRVL 349
>gb|EOY24612.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao]
Length = 1484
Score = 144 bits (363), Expect = 1e-31
Identities = 113/358 (31%), Positives = 180/358 (50%), Gaps = 15/358 (4%)
Frame = +1
Query: 745 CKSVLKRQNSANLRESNPM-KASQDTNCVFCQADGKKPEVAVSFKLASEIINRK------ 903
CKSV K ++ +N + K +Q C +C + ++FK++S+ + RK
Sbjct: 104 CKSVRK---DLRIKGANSVSKVNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVE 160
Query: 904 VYQTIRVEARQRGKTGNYAK--DCLKSISGREVDDNMPTKNVTLPPARAREILRQVD--- 1068
V + ++ R+RGK + D + +E P + V L ++ R +L+ VD
Sbjct: 161 VSEKSSMKVRKRGKQALPSDYWDFIPKDEQQEESLIRPNRRV-LSHSQVRYLLKDVDPEF 219
Query: 1069 -EKIVPRPDSFFIEFIAVTPNSHRINE-RHQSFKGSVLTPDDRTKALKLLMQFIERIRGF 1242
+K V DS F+ VTPNSHR+ E H S G L D RT+ K L F RG
Sbjct: 220 IKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQRLIFDQRTRVYKKLADF----RGI 275
Query: 1243 KFREDVTVFDTMKIVH-SLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKD 1419
V + +KI L + +N+ V + S+ SGL+++KD
Sbjct: 276 ANELSSHVLECLKISKLHLEKPSNEESAL---------VLAQKRNKDSASNMSGLRYMKD 326
Query: 1420 TALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHRITK 1599
LGKR+D R V+ G+PNL+L EI I +AERL ++E +N +N +++ + R+ +
Sbjct: 327 VILGKRNDHCFRMVLTGNPNLKLSEISIPCHVAERLQIAEQLNNWNEERLKACCDLRLLE 386
Query: 1600 GLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
+ RR G L R +L++GD R + +GD+I+INR P++H+HSLI+ +KVL
Sbjct: 387 KGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGDIILINRPPSIHQHSLIALSVKVL 444
Score = 75.5 bits (184), Expect = 7e-11
Identities = 36/97 (37%), Positives = 56/97 (57%)
Frame = +1
Query: 58 VPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCE 237
+P A + GI +++ ++S+ + ++ DP+ G PN C+TCG +D+ CE
Sbjct: 14 LPAAFVTGIRFNVSNDRDNEKMSVME-IAAPSEVSDPKLGFPNFSNHCTTCGAADMKHCE 72
Query: 238 GHFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKK 348
GHFG I P I +P +S+VV+ILN ICP C +K
Sbjct: 73 GHFGVINFPYAILHPYFLSEVVQILNKICPGCKSVRK 109
>gb|EMJ12114.1| hypothetical protein PRUPE_ppa000278mg [Prunus persica]
Length = 1356
Score = 142 bits (359), Expect = 4e-31
Identities = 96/261 (36%), Positives = 137/261 (52%), Gaps = 6/261 (2%)
Frame = +1
Query: 1009 PTKNVTLPPARAREILRQVD----EKIVPRPDSFFIEFIAVTPNSHRINERHQSFK-GSV 1173
P K V L A+ +L+ VD EKIVP+ +S + VTPN HR+ E SF G
Sbjct: 189 PNKRV-LSHAQVHYLLKDVDTKFIEKIVPKTNSLSMGSFLVTPNCHRVTEVMHSFSNGQR 247
Query: 1174 LTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPP 1353
L D+RT+A + L+ F + + LG
Sbjct: 248 LMFDERTRAYRKLVDF------------------KGVANELG------------------ 271
Query: 1354 VENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTV 1533
+H S+ S GL+W+KD LGKRSD R VV+GDPN++L EIGI ++AERL +
Sbjct: 272 ----SHDPSKTS---GLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQI 324
Query: 1534 SETVNRFNRRKIREYNNHRI-TKGLSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLI 1710
SE +NR+N K+ N R+ KG H RR G L +L++GD R ++DGD++
Sbjct: 325 SENLNRWNIEKLDASCNLRLMVKGEMH-VRRKGSLVWVRQTDELQMGDTIYRPLSDGDIV 383
Query: 1711 IINRTPTLHRHSLISFKIKVL 1773
+INR P++H+HSLI+ +K+L
Sbjct: 384 LINRPPSIHQHSLIALSVKIL 404
Score = 86.3 bits (212), Expect = 4e-14
Identities = 41/92 (44%), Positives = 58/92 (63%)
Frame = +1
Query: 58 VPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCE 237
VP + GI ++++T+E I IS+K + ++ DP+ GLPNP +CSTCG + CE
Sbjct: 11 VPSGLITGIHLNVSTQEDIENISVKQ-IDAVTEVTDPKLGLPNPSFQCSTCGAEKLKCCE 69
Query: 238 GHFGCIASPRVIYNPLLISDVVEILNNICPYC 333
GHFG I P I +P +S+V +ILN ICP C
Sbjct: 70 GHFGDIKFPCTILHPYYLSEVTQILNKICPGC 101
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 142 bits (359), Expect = 4e-31
Identities = 105/357 (29%), Positives = 166/357 (46%), Gaps = 14/357 (3%)
Frame = +1
Query: 745 CKSVLKRQNSANLRESNPMKASQDTNCVFCQADGKKPEVAVSFKLASEIINRKVYQTIRV 924
CKS RQ + + + C +C A+ + FK++S+ + RK + +
Sbjct: 101 CKST--RQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEM 158
Query: 925 EARQRGKTGNYAK---------DCLKSISGREVDDNMPTKNVTLPPARAREILRQVD--- 1068
+ K + D + +E + P + V L A+ +L+ +D
Sbjct: 159 NEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRV-LSHAQVHYLLKDIDPGF 217
Query: 1069 -EKIVPRPDSFFIEFIAVTPNSHRINE-RHQSFKGSVLTPDDRTKALKLLMQFIERIRGF 1242
++ V R DSFF+ + VTPN+HR+ E H G L D ++A K L+ F RG
Sbjct: 218 IKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDF----RGT 273
Query: 1243 KFREDVTVFDTMKIVHSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDT 1422
V D C K S + + S SGLKW+K+
Sbjct: 274 ANELSCRVLD-----------------CLKTSKASNLRSEKSTSKDSASKMSGLKWIKEV 316
Query: 1423 ALGKRSDFSLRAVVIGDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHRITKG 1602
LGKR++ S R +V+GDP L+L EIGI +AE L +SE +N +N K+ N R+ +
Sbjct: 317 LLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEK 376
Query: 1603 LSHNTRRNGVLSRGMDASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
RR G L+ + + GD+ R +TDGD+++INR P++H+HS+I+ +KVL
Sbjct: 377 GQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVL 433
Score = 89.0 bits (219), Expect = 6e-15
Identities = 42/97 (43%), Positives = 60/97 (61%)
Frame = +1
Query: 43 MSEVLVPLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESD 222
+ E VP L GI D++T+E + +IS+ + ++ DP+ G+PNP +CSTCG D
Sbjct: 6 LEEQQVPSGLLIGIKFDVSTEEDMEKISVMK-IDAVNEITDPKLGVPNPSCQCSTCGAKD 64
Query: 223 VTVCEGHFGCIASPRVIYNPLLISDVVEILNNICPYC 333
CEGHFG I P I +P +++VV+ILN ICP C
Sbjct: 65 TKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGC 101
>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
mays]
Length = 871
Score = 141 bits (356), Expect = 8e-31
Identities = 106/342 (30%), Positives = 166/342 (48%), Gaps = 25/342 (7%)
Frame = +1
Query: 823 CVFCQADGKKPEVAVSFK-LASEII---------NRKVYQTIRVEARQRGKTGNYAKDCL 972
C +C DG K ++ FK L+S + N V + I + A + N +K
Sbjct: 118 CKYCSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKG-K 176
Query: 973 KSISGREVD--DNMPTKN---------VTLPPARAREILRQVDEKI----VPRPDSFFIE 1107
S+ G +D D +P++N + L P + +L++ D ++ V R + F+
Sbjct: 177 GSLEGLPLDFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLS 236
Query: 1108 FIAVTPNSHRINERHQSFKGSVLTPDDRTKALKLLMQFIERIRGFKFREDVTVFDTMKIV 1287
+ VTPN HR+ E LT DDRTKA K ++ RI ++ +V + +
Sbjct: 237 CLPVTPNCHRVVEIGYGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVS 296
Query: 1288 HSLGRLTNDYFQCNKLSDTCPPVENVNHGESQNSHHSGLKWLKDTALGKRSDFSLRAVVI 1467
+ +K +D GE+ + G+KWLKD L KRSD R++++
Sbjct: 297 SRVSECLKSSKLYSKKAD----------GETSTDTY-GMKWLKDVVLSKRSDNVFRSIMV 345
Query: 1468 GDPNLQLDEIGINRELAERLTVSETVNRFNRRKIREYNNHRITKGLSHNTRRNGVLSRGM 1647
GDP ++L EIGI +L+ L VSE V+ +N + N + RRNG L
Sbjct: 346 GDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLR 405
Query: 1648 DASQLKIGDLYERQITDGDLIIINRTPTLHRHSLISFKIKVL 1773
A QL+IGD+ R + DGD+I+INR P++H+HSLI+ K+L
Sbjct: 406 KADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKIL 447
Score = 72.4 bits (176), Expect = 6e-10
Identities = 35/96 (36%), Positives = 49/96 (51%)
Frame = +1
Query: 61 PLARLKGIGIDIATKEVIARISMKPTVQNGKDLMDPRFGLPNPEGKCSTCGESDVTVCEG 240
P A L I D+ T + ++S ++ D+ P+ GLPN +C TCG C+G
Sbjct: 8 PEAILNAIKFDLMTSTDMEKLSSMSIIEVS-DVTSPKLGLPNGSLQCETCGSQRGRDCDG 66
Query: 241 HFGCIASPRVIYNPLLISDVVEILNNICPYCYKPKK 348
HFG ++NP I DVV LN ICP C P++
Sbjct: 67 HFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPRE 102