BLASTX nr result
ID: Ephedra27_contig00012304
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00012304
(4059 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 2360 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2345 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2341 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2340 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2339 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2339 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2338 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2335 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 2258 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 1952 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 1506 0.0
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 1453 0.0
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 1446 0.0
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1281 0.0
gb|ADT79683.1| replicase [Potato virus X] 1221 0.0
dbj|BAB83122.1| RNA dependent RNA polymerase [Potato virus X] 1221 0.0
sp|P09395.1|RDRP_PVX RecName: Full=RNA replication protein; AltN... 1207 0.0
dbj|BAJ12046.1| RNA dependent RNA polymerase [Potato virus X] 1199 0.0
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 1055 0.0
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 929 0.0
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 2360 bits (6117), Expect = 0.0
Identities = 1165/1352 (86%), Positives = 1227/1352 (90%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYRTLKRELAQTRH+NPFAQ+P+AADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSPDAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVN
Sbjct: 370 LRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T +FREF S T+ + LE S E+ +HTSLKV LS EQL ALHEL
Sbjct: 430 PDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHEL 489
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN+R GGP+LPK + T S+ L + H P P
Sbjct: 490 GNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQQRSTNPPMG 530
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
+ K +GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P K++ TLR+LN
Sbjct: 531 SLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLN 590
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
RFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLTDN + AISVIHGAG
Sbjct: 591 RFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAG 650
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ P+V
Sbjct: 651 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVV 710
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELS
Sbjct: 711 IFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELS 770
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 771 RYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 830
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEAT
Sbjct: 831 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEAT 890
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EFS VE+ TT LDDF+E L DKF+REIF
Sbjct: 891 PYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREELHDKFDREIF 950
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
TEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEFRAKKDLGDI
Sbjct: 951 TEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEFRAKKDLGDI 1010
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSPDFHEHQILI
Sbjct: 1011 LWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSPDFHEHQILI 1070
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK
Sbjct: 1071 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 1130
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1131 TPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1190
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1191 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDDCAIAQVCPE 1250
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1251 KPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1310
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ANYSLDAKLAYSLGD+L DLLS
Sbjct: 1311 GVKDAITNVVANYSLDAKLAYSLGDELHDLLS 1342
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2345 bits (6076), Expect = 0.0
Identities = 1161/1352 (85%), Positives = 1217/1352 (90%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +L +E H SL + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN R GGPLLPK P + R ++ + +P DP+TLPWV
Sbjct: 485 GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLRSLN
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLN 602
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
R+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAG
Sbjct: 603 RYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAG 662
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+V
Sbjct: 663 GSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVV 722
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELS
Sbjct: 723 IFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELS 782
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 783 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 842
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT
Sbjct: 843 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 902
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 903 PYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIF 962
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDI
Sbjct: 963 NPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDI 1022
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILI
Sbjct: 1023 LWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILI 1082
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEK
Sbjct: 1083 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEK 1142
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1143 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1202
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1203 LSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1262
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1263 KPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1322
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1323 GVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2341 bits (6066), Expect = 0.0
Identities = 1159/1352 (85%), Positives = 1216/1352 (89%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +L +E H SL + + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN R GGPLLPK P + R ++ + +P DP+TLPWV
Sbjct: 485 GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLR LN
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLN 602
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
R+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAG
Sbjct: 603 RYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAG 662
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+V
Sbjct: 663 GSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVV 722
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELS
Sbjct: 723 IFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELS 782
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 783 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 842
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT
Sbjct: 843 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 902
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 903 PYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIF 962
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDI
Sbjct: 963 NPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDI 1022
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILI
Sbjct: 1023 LWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILI 1082
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEK
Sbjct: 1083 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEK 1142
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1143 TPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1202
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1203 LSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1262
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1263 KPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1322
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1323 GVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2340 bits (6065), Expect = 0.0
Identities = 1159/1352 (85%), Positives = 1216/1352 (89%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +L +E H SL + + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN R GGPLLPK P + R ++ + +P DP+TLPWV
Sbjct: 485 GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLR LN
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLN 602
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
R+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAG
Sbjct: 603 RYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAG 662
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+V
Sbjct: 663 GSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVV 722
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELS
Sbjct: 723 IFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELS 782
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 783 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 842
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT
Sbjct: 843 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 902
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 903 PYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIF 962
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDI
Sbjct: 963 NPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDI 1022
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILI
Sbjct: 1023 LWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILI 1082
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEK
Sbjct: 1083 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEK 1142
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1143 TPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1202
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1203 LSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1262
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1263 KPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1322
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1323 GVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2339 bits (6062), Expect = 0.0
Identities = 1159/1356 (85%), Positives = 1217/1356 (89%), Gaps = 4/1356 (0%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
L+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +LE AE H SL + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLP----KITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPAT 1610
GNTR GGPLLP K+T E + + + T +P DP T
Sbjct: 485 GNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTT------QTLDLPHPEDPTT 538
Query: 1611 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTL 1790
LPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++++TL
Sbjct: 539 LPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTL 598
Query: 1791 RSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVI 1970
RS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML +N NLAISVI
Sbjct: 599 RSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVI 658
Query: 1971 HGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 2150
HGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+
Sbjct: 659 HGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSR 718
Query: 2151 SPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 2330
P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IF
Sbjct: 719 CPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIF 778
Query: 2331 SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 2510
SELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA
Sbjct: 779 SELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDA 838
Query: 2511 GHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 2690
GHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK
Sbjct: 839 GHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 898
Query: 2691 LEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFE 2870
LEATPYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+
Sbjct: 899 LEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDFKEELHDKFD 958
Query: 2871 REIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKD 3050
REIF HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEANL EFRAKKD
Sbjct: 959 REIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEANLAEFRAKKD 1018
Query: 3051 LGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEH 3230
LGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGERRQSPDFHEH
Sbjct: 1019 LGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGERRQSPDFHEH 1078
Query: 3231 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMI 3410
QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+ALSPNNIMI
Sbjct: 1079 QILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFREALSPNNIMI 1138
Query: 3411 NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY 3590
NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY
Sbjct: 1139 NCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGY 1198
Query: 3591 LDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQ 3770
LDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQ
Sbjct: 1199 LDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQ 1258
Query: 3771 VCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA 3950
VCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA
Sbjct: 1259 VCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKA 1318
Query: 3951 QKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
QKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1319 QKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2339 bits (6062), Expect = 0.0
Identities = 1158/1352 (85%), Positives = 1215/1352 (89%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +L +E H SL + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN R GGPLLPK P + R ++ + +P DP+TLPWV
Sbjct: 485 GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLRSLN
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLN 602
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
R+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAG
Sbjct: 603 RYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAG 662
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+V
Sbjct: 663 GSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVV 722
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELS
Sbjct: 723 IFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELS 782
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 783 RYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 842
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT
Sbjct: 843 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 902
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 903 PYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIF 962
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDI
Sbjct: 963 NPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDI 1022
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEH ILI
Sbjct: 1023 LWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHHILI 1082
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCE+
Sbjct: 1083 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCER 1142
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1143 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1202
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1203 LSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1262
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1263 KPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1322
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1323 GVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2338 bits (6059), Expect = 0.0
Identities = 1158/1352 (85%), Positives = 1215/1352 (89%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +L +E H SL + + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN R G PLLPK P + R ++ + +P DP+TLPWV
Sbjct: 485 GNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + ++L+TLR LN
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLN 602
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
R+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NLAISVIHGAG
Sbjct: 603 RYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAG 662
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+V
Sbjct: 663 GSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVV 722
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELS
Sbjct: 723 IFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELS 782
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 783 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 842
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT
Sbjct: 843 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 902
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 903 PYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIF 962
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDI
Sbjct: 963 NPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDI 1022
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILI
Sbjct: 1023 LWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILI 1082
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEK
Sbjct: 1083 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEK 1142
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1143 TPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1202
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1203 LSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1262
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1263 KPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1322
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1323 GVKDAITNVVANYSLDAKLAYSLGDDLQDLLS 1354
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2335 bits (6050), Expect = 0.0
Identities = 1156/1352 (85%), Positives = 1214/1352 (89%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
QDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TAQRLETKGAN
Sbjct: 190 YPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
LRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVN
Sbjct: 370 LRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T ++F+ F + T+ +L +E H SL + L QL ALHEL
Sbjct: 430 PDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHEL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
GN R GGPLLPK P + R ++ + +P DP+TLPWV
Sbjct: 485 GNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPP-HKTTQSSDLPHPQDPSTLPWV 542
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P ++++L+TLRSLN
Sbjct: 543 AWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLN 602
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
R+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT+N NLAISVIHGAG
Sbjct: 603 RYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAG 662
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ P+V
Sbjct: 663 GSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVV 722
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELS
Sbjct: 723 IFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELS 782
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PGLHLLVPSLVKKAAFTDAGHKV
Sbjct: 783 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKV 842
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
STYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT
Sbjct: 843 STYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 902
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF+ VED TTTLDDFKE L DKF+REIF
Sbjct: 903 PYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEELRDKFDREIF 962
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EFRAKKDLGDI
Sbjct: 963 NPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEFRAKKDLGDI 1022
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSPDFHEHQILI
Sbjct: 1023 LWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSPDFHEHQILI 1082
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEK
Sbjct: 1083 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEK 1142
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1143 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1202
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1203 LSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1262
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1263 KPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1322
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLS
Sbjct: 1323 GVKDAITNVVDNYSLDAKLAYSLGDDLQDLLS 1354
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 2258 bits (5850), Expect = 0.0
Identities = 1119/1352 (82%), Positives = 1193/1352 (88%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHPYAIT HTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHPYAITSHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
Q+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPPE RSL
Sbjct: 130 QETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSL 188
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA PT+TAQRLETKGAN
Sbjct: 189 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGAN 248
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA
Sbjct: 249 HLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEA 308
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
+ + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV L +
Sbjct: 309 QREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPA 367
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVN
Sbjct: 368 PPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVN 427
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
P+DAD F++FS + ++ T+ LE SAE+ HT LKV + LS QL A+H L
Sbjct: 428 PEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHAL 487
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPATLPWV 1622
G++R GGPLLP++T + E ++AS A + D P +P TLPWV
Sbjct: 488 GHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWV 547
Query: 1623 AWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSLN 1802
AWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW L ++L+TLRSLN
Sbjct: 548 AWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLN 607
Query: 1803 RFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAG 1982
RFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N LAISVIHGAG
Sbjct: 608 RFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAG 667
Query: 1983 GSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIV 2162
GSGKSQALQTLLRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SP+V
Sbjct: 668 GSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVV 727
Query: 2163 IFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELS 2342
IFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S S
Sbjct: 728 IFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFS 787
Query: 2343 RYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKV 2522
RYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PGLHLLVPSL+KKAAFTDAGHKV
Sbjct: 788 RYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKV 847
Query: 2523 STYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEAT 2702
S+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEAT
Sbjct: 848 SSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEAT 907
Query: 2703 PYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIF 2882
PYLKTFLSLVREDKI EF VE+ TTLDDFKE L DKF+REIF
Sbjct: 908 PYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEELRDKFDREIF 967
Query: 2883 TEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDI 3062
T GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEFRAKKDLGDI
Sbjct: 968 TSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEFRAKKDLGDI 1027
Query: 3063 LWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILI 3242
LW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSPDFHEHQILI
Sbjct: 1028 LWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSPDFHEHQILI 1087
Query: 3243 FLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 3422
FLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK
Sbjct: 1088 FLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEK 1147
Query: 3423 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 3602
TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK
Sbjct: 1148 TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIK 1207
Query: 3603 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPE 3782
LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDDCAIAQVCPE
Sbjct: 1208 LSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDDCAIAQVCPE 1267
Query: 3783 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 3962
KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA
Sbjct: 1268 KPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKA 1327
Query: 3963 GVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
GV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 1328 GVRDAITNVVANYSLDAKLAYSLGDDLQDLLS 1359
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 1952 bits (5057), Expect = 0.0
Identities = 978/1362 (71%), Positives = 1100/1362 (80%), Gaps = 10/1362 (0%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR +K+EL TRHSNPFAQ+P AAD LE LGINSHP AITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRVMKKELTATRHSNPFAQSPAAADTLELLGINSHPLAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEV SHYLPKENPV+FLFMKP+KLR+FHRGP H D FLNA++EPKDVPRYP
Sbjct: 70 AAKAIESDLYEVTSHYLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
DTVI + I T +AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSL
Sbjct: 130 TDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
YP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + + T+TAQRLETKGAN
Sbjct: 190 YPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTAQRLETKGAN 248
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRG YLTPERRTFTT YVTVP+IFLP N RTPI+KT+ MQ+FFYIKSVKE
Sbjct: 249 HLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKEC 308
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
+ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP
Sbjct: 309 RERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRP 368
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
R + Q +++FF+G P KLIKAL WQP+ LEF V TV R PPGF +P +P PVN
Sbjct: 369 ARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVN 428
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
DA T A ++ SL + + LS +QL ALH L
Sbjct: 429 EVDALTTAA---------------------------CANQSLPLDN--LSEDQLEALHVL 459
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNS-------- 1598
G+ R G LP +P + E T ++A + T V V++
Sbjct: 460 GSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPNVEVSANPLTGTPL 513
Query: 1599 -DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPG-LS 1772
DP TLPW AWLP L ALGFEA EIQTDP IMPITD++ LP T E+ +
Sbjct: 514 PDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFD 573
Query: 1773 KVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN 1952
KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LT+
Sbjct: 574 KVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETR 633
Query: 1953 LAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 2132
L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNPPEQFRTFER
Sbjct: 634 LGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFER 693
Query: 2133 AFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 2312
AFV S +P+VIFDDYGKLPQG++EAFA+ L+L ILTGDPRQSTHHE+NE+A+I++L
Sbjct: 694 AFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLE 753
Query: 2313 PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKK 2492
PAT IFS L RYYINATHRN K LANKLGVYSSN PL V+YGF+P+PGLHLLVPSLVKK
Sbjct: 754 PATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKK 813
Query: 2493 AAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 2672
AAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQS
Sbjct: 814 AAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQS 873
Query: 2673 SAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKES 2852
SAFWEKLEATPYLKTFLSLVRE K+ EF+ VE+ + TL ++S
Sbjct: 874 SAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENASHTLGLIQDS 933
Query: 2853 LSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEE 3032
L+DK++REI HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +STPEANL E
Sbjct: 934 LADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRLSTPEANLAE 993
Query: 3033 FRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQS 3212
F AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ QIKGGERRQS
Sbjct: 994 FHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQIKGGERRQS 1053
Query: 3213 PDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALS 3392
PDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR+RDAL
Sbjct: 1054 PDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARYMRRYRDALG 1113
Query: 3393 PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 3572
PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEILKAK+FNLPE
Sbjct: 1114 PNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPE 1173
Query: 3573 WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGD 3752
WVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+ AQ+YAGD
Sbjct: 1174 WVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGD 1233
Query: 3753 DCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 3932
DCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLIKDPLKLH+S
Sbjct: 1234 DCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSS 1293
Query: 3933 LELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
LELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLS
Sbjct: 1294 LELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLS 1335
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 1506 bits (3898), Expect = 0.0
Identities = 789/1430 (55%), Positives = 972/1430 (67%), Gaps = 78/1430 (5%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
Q+TDPSLKAVIQD++YRT+K EL Q + NP+AQT EAAD LE LG+ +HPYAI HTHA
Sbjct: 10 QITDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTGEAADLLETLGVITHPYAIATHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
A KA+E DLY VSHYLP+++PV+F+FMKPAKL++ RGP H D F+N+ VEPKD+ RYP
Sbjct: 70 AGKALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
+ TV+ + I T+IAFMGDTLHFL+P FV LFA SPKL+T YAT+VLPPEAL+++ SL
Sbjct: 130 EQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP----------T 686
YPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG + N P
Sbjct: 190 YPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWA 249
Query: 687 ITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMM 866
+TAQR+ETKGANHLF+FQRG TP+ R+ T Y+TVP +FLP+++N R P+ KTI
Sbjct: 250 VTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQ 309
Query: 867 QMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDV 1046
QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL NYF + L S E+V
Sbjct: 310 QMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEV 369
Query: 1047 LSGNLIQRLLRPLRSDIQRVLQFFRGRPSF--------------------VKLIKALDWQ 1166
L+G+L ++L RP++S + + G+P F VK++ L
Sbjct: 370 LAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYVKILSCLGGW 429
Query: 1167 PITLEFPVRTV-------NTRLRGPPGFHNPFTKPHPV---------------------- 1259
+ F RT+ N L ++ KP P
Sbjct: 430 DNEMPFKFRTLPGESDLSNDELGPQLSHYDTSPKPAPSAIEASEEAAALLLKTRGLVGKR 489
Query: 1260 ------NPDDADTMRAFREFSYTSETSTPTTIADS-LEGSAENLASH-TSLKVGHADLST 1415
+ D + + + T +P++ S LE + +A+ T L V +
Sbjct: 490 RVARLRSEGDPEVAACLKIKGEPTTTQSPSSSGLSVLEKELDQIATQQTKLIVQEEERED 549
Query: 1416 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPV- 1592
L++ P LP ++PE + R + ++T+ V
Sbjct: 550 FIKTVLNKRRKACEDKPTLP-LSPELEKRHEALKSKAESSEASKTEPRKDENYTEMVNKT 608
Query: 1593 ---NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEP 1763
N+ A LPW W+PKLNALGFEA E Q P T +IMPITD+ K +P H
Sbjct: 609 LIENAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETK 664
Query: 1764 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 1943
++L L++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE QT+ D+
Sbjct: 665 APQELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHN 724
Query: 1944 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 2123
+ +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP N PE FRT
Sbjct: 725 IRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRT 784
Query: 2124 FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 2303
FE+A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I+
Sbjct: 785 FEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIA 844
Query: 2304 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 2483
+L P+T IFS+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP +HLLVPSL
Sbjct: 845 QLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSL 904
Query: 2484 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 2663
+KKAAF++AGHK STYAGCQGITA K+QILLD++T MC++EVLYTALSRAVDSIHF+N+
Sbjct: 905 IKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTA 964
Query: 2664 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDF 2843
SS FWEKLEATPYLKTFLS+VREDKI E+ VE+ T L++F
Sbjct: 965 PTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVENGNTILEEF 1024
Query: 2844 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 3023
E L+ K EREIF E+HGHTNCVQ D+ Q SHQQAKDEALLWETIKARL IS + N
Sbjct: 1025 TEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKARLVISHKQHN 1084
Query: 3024 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 3203
EF KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL KS +K GER
Sbjct: 1085 WTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKSTQMLKNGER 1143
Query: 3204 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 3383
RQSPDF E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARYMRR RD
Sbjct: 1144 RQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTMARYMRRIRD 1203
Query: 3384 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 3563
P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQFEILKAK+ N
Sbjct: 1204 IYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQFEILKAKHHN 1263
Query: 3564 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 3743
+PEWV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+IPEG AQ
Sbjct: 1264 IPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFDIPEGVAQ-- 1321
Query: 3744 AGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGYLITPKGLIK 3908
D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCGYLITPKGLIK
Sbjct: 1322 ---DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGYLITPKGLIK 1378
Query: 3909 DPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
DPLKL AS LAK + K + N + NY+ D KLAY LGDDL +LL+
Sbjct: 1379 DPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLT 1424
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1453 bits (3762), Expect = 0.0
Identities = 768/1368 (56%), Positives = 927/1368 (67%), Gaps = 17/1368 (1%)
Frame = +3
Query: 6 LTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAA 185
++DPSLKAVIQ+EAY++++ L +H NP+A E A+ LE GI S PYA+ HTHAA
Sbjct: 11 ISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDPYAVAAHTHAA 70
Query: 186 AKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQ 365
AK +E DLY VSHY+PKENPV+FLFMK AKL++F RG GD F+N EPKD RYP
Sbjct: 71 AKCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPL 130
Query: 366 DTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 545
DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLPPEA ++LRSL+
Sbjct: 131 DTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLH 190
Query: 546 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANH 725
P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITAQR+ETK ANH
Sbjct: 191 PLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANH 250
Query: 726 LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 905
LF+F RG TP R+F Y T+P IFLP +N RTP +KT + QMF Y+KS+K+
Sbjct: 251 LFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPT 310
Query: 906 ERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 1076
E D++AKFRQL T +LQ P LL + E S +LSG+ ++RLL
Sbjct: 311 ETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLL 366
Query: 1077 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTK 1247
+PL ++++ Q GR FV+L+KAL+W IT V T +T R G
Sbjct: 367 KPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPL 426
Query: 1248 PHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSLKVGHADLSTE 1418
+ + P + +RA Y + T D + L ++ T+L H E
Sbjct: 427 GNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPHTTAPEE 486
Query: 1419 Q-------LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHT 1577
L+ H GGP EQ++E + +G
Sbjct: 487 DITHRVLALKVPHGSPPPGFGGP--SSAAQPEQEKEVARPATPPEQEKQP-----EGQKM 539
Query: 1578 DQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHW 1754
PV++ LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H
Sbjct: 540 ITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH- 598
Query: 1755 NEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLT 1934
V+ L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+
Sbjct: 599 -----ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKA 653
Query: 1935 DNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQ 2114
+ + + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+
Sbjct: 654 ERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEK 713
Query: 2115 FRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEA 2294
+T+ERAF SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A
Sbjct: 714 IKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQA 773
Query: 2295 LISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLV 2474
+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP LHLLV
Sbjct: 774 MISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLV 833
Query: 2475 PSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFV 2654
PSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+
Sbjct: 834 PSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFI 893
Query: 2655 NSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTL 2834
N+ S+FWEKLEATPYLK FLS VRE+ IA VE+ + L
Sbjct: 894 NTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTHFPVENTSCAL 953
Query: 2835 DDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTP 3014
+ E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+P
Sbjct: 954 GAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSP 1013
Query: 3015 EANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 3194
EAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K
Sbjct: 1014 EANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKN 1073
Query: 3195 GERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRR 3374
GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRR
Sbjct: 1074 GERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRR 1133
Query: 3375 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAK 3554
FR+ L PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGAMLQFEILKAK
Sbjct: 1134 FREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGAMLQFEILKAK 1193
Query: 3555 YFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTA 3734
+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTA
Sbjct: 1194 HFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTA 1253
Query: 3735 QIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDP 3914
Q+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP
Sbjct: 1254 QLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDP 1313
Query: 3915 LKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
KL ASL+L +A +G K + NY D LAY+L D L ++LS
Sbjct: 1314 AKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILS 1359
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1446 bits (3742), Expect = 0.0
Identities = 762/1361 (55%), Positives = 919/1361 (67%), Gaps = 10/1361 (0%)
Frame = +3
Query: 6 LTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAA 185
++DPSLKAVIQ+EAY++++ L +H NP+A E A+ LE GI S PYA+ HTHAA
Sbjct: 11 ISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDPYAVAAHTHAA 70
Query: 186 AKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQ 365
AK +E DLY VSHY+PKENPV+FLFMK AKL++F RG GD F+N EPKD RYP
Sbjct: 71 AKCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPL 130
Query: 366 DTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 545
DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLPPEA ++LRSL+
Sbjct: 131 DTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLH 190
Query: 546 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANH 725
P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITAQR+ETK ANH
Sbjct: 191 PLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANH 250
Query: 726 LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 905
LF+F RG TP R+F Y T+P IFLP +N RTP +KT + QMF Y+KS+K+
Sbjct: 251 LFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPT 310
Query: 906 ERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLL 1076
E D++AKFRQL T +LQ P LL + E S +LSG+ ++RLL
Sbjct: 311 ETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLL 366
Query: 1077 RPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRGPPGFHNPFTK 1247
+PL ++++ Q GR FV+L+KAL+W IT V T +T R G
Sbjct: 367 KPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERFLGGSFKALPL 426
Query: 1248 PHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSLKVGHADLSTE 1418
+ + P + +RA Y + T D + L ++ T+L H E
Sbjct: 427 GNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTLFAPHTTAPEE 486
Query: 1419 QLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNS 1598
+ G P P + +G PV++
Sbjct: 487 DITHRVLALKVPRGSPPPGFEGPSSSAQPEQEKEVAKPATPPEQEKQPEGQKMITRPVSA 546
Query: 1599 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPGLSK 1775
LPW W P L LGF+A EIQ P VIMPIT+ V LP + + H
Sbjct: 547 LENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQGH------EL 600
Query: 1776 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 1955
V+ L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT+ + + +
Sbjct: 601 VMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQTLKAERLEKTV 660
Query: 1956 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 2135
+SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P PE+ +T+ERA
Sbjct: 661 GLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVRPEKIKTYERA 720
Query: 2136 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 2315
F SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE NE+A+IS+LAP
Sbjct: 721 FTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENNEQAMISQLAP 780
Query: 2316 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 2495
AT +F L RYYINATHRN + LANKL VYS K+T GFQP LHLLVPSL+KK+
Sbjct: 781 ATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLHLLVPSLLKKS 840
Query: 2496 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 2675
A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SIHF+N+ S
Sbjct: 841 AYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSIHFINTGPTHS 900
Query: 2676 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESL 2855
+FWEKLEATPYLK FLS VRE+ IA VE+ + L + E +
Sbjct: 901 SFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTSCALGAYMEKV 960
Query: 2856 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 3035
+KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTIS+PEAN EEF
Sbjct: 961 PEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTISSPEANWEEF 1020
Query: 3036 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 3215
KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++ +K GERRQSP
Sbjct: 1021 YKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNMLKNGERRQSP 1080
Query: 3216 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 3395
DF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARYMRRFR+AL P
Sbjct: 1081 DFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARYMRRFREALGP 1140
Query: 3396 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 3575
N+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQFEILKAK+FN+P
Sbjct: 1141 NHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEILKAKHFNIPGE 1200
Query: 3576 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 3755
+I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP GTAQ+YAGDD
Sbjct: 1201 IIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPPGTAQLYAGDD 1260
Query: 3756 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 3935
AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLIKDP KL ASL
Sbjct: 1261 SAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLIKDPAKLFASL 1320
Query: 3936 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
+L +A +G K + NY D LAY+L D L ++LS
Sbjct: 1321 KLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILS 1359
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 1281 bits (3316), Expect = 0.0
Identities = 625/685 (91%), Positives = 652/685 (95%)
Frame = +3
Query: 2004 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 2183
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 2184 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 2363
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 2364 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 2543
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 2544 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 2723
GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240
Query: 2724 SLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 2903
SLVRED++AEFS VED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300
Query: 2904 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 3083
NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360
Query: 3084 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 3263
AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420
Query: 3264 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 3443
KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480
Query: 3444 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 3623
WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540
Query: 3624 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 3803
GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600
Query: 3804 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 3983
KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660
Query: 3984 NVIANYSLDAKLAYSLGDDLQDLLS 4058
NV+ANYSLDAKLAYSLGDDLQDLLS
Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLS 685
>gb|ADT79683.1| replicase [Potato virus X]
Length = 1456
Score = 1221 bits (3158), Expect = 0.0
Identities = 675/1426 (47%), Positives = 883/1426 (61%), Gaps = 78/1426 (5%)
Frame = +3
Query: 9 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 188
TD + K +IQDEAYR ++ + + + +NP+AQT EAA+ LE GI ++PY+I HTHAAA
Sbjct: 12 TDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTVEAANDLEGFGIATNPYSIELHTHAAA 71
Query: 189 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 368
K IE+ L EV+ LP+E PV+F+F+KP KL + R P D F N +EP+DV RYP++
Sbjct: 72 KTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKE 130
Query: 369 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 548
T+I +L I T+ A++ DTLHFL PS++ F + PKLQTLYATLVLP EA +++ S +P
Sbjct: 131 TIIDKLTEITTDTAYISDTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHP 190
Query: 549 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG-------------HLTAANQP-- 683
IY+L Y DGF YIPG H G +Y H++ L+WL VG HL +
Sbjct: 191 NIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVE 250
Query: 684 --TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKT 857
T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+ +NCR PI K
Sbjct: 251 MHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCRKPILKK 310
Query: 858 IMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF 1037
MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y EF A L + TCF
Sbjct: 311 TMMQLFLYVRTVKVAKNCDIFAKIRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCF 370
Query: 1038 EDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR--- 1208
D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F V T + R
Sbjct: 371 SDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHP 430
Query: 1209 LRGPPGFH--------------------NPFTK--PHPVNPD-DADTMRAFREFSYTSET 1319
L+ F + FT+ + VN + D +R E E
Sbjct: 431 LQAWKAFRPREVSDVEEMESLFSDGDLLDCFTRMPAYAVNAEEDLAAIRKTPEMDVGQEV 490
Query: 1320 STPTTIADSLEGSAENLASHT----SLKVGHADLST--------EQLRALHELGNTRLGG 1463
P + AE + S +V H + E +RA E + + G
Sbjct: 491 KEPAGDRNQYSNPAETFLNRLHRKHSREVKHQAVKKAKRLAEIQESMRAEGEAESNEMSG 550
Query: 1464 PL--------LPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPAT--- 1610
+ LP + +Q+ AS N +QV + A
Sbjct: 551 GMGAIPSNAELPSTSDAKQELTLPITKPVPARWEDASFT-NSSVEEEQVKLPGKEAVETA 609
Query: 1611 -------LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPG 1766
LPW W+P+LNA+GF+ALEIQ D S G +IMPIT+ V L K PE G
Sbjct: 610 TQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GAMIMPITEMVSGLEKEDFPE-----G 663
Query: 1767 LSKVLTT-LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 1943
K L L ++NR P + D RAR + SDVKN R G + +W E T +++
Sbjct: 664 TPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQATSWGEYLTGKIESL 723
Query: 1944 TAN-LAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWLKKLPHNPPEQF 2117
T +A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW KK+P+ P F
Sbjct: 724 TERKVATCVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMF 783
Query: 2118 RTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 2297
+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQS +HE E+A
Sbjct: 784 KTYEKALILGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVYHETAEDAS 843
Query: 2298 ISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVP 2477
I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++ + G+ LVP
Sbjct: 844 IRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSAEFLEGIPTLVP 903
Query: 2478 SLVKKAAFTDAGHKVS-TYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFV 2654
S K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTALSRA D I FV
Sbjct: 904 SDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTALSRATDRIDFV 963
Query: 2655 NSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTL 2834
N++A SSAFWEKL++TPYLKTFLS+VRE + E+ VE++ + L
Sbjct: 964 NTSANSSAFWEKLDSTPYLKTFLSVVREQALREYEPAEAEPIREPEPQTHMCVENEESVL 1023
Query: 2835 DDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTP 3014
+++KE L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL S
Sbjct: 1024 EEYKEELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQ 1083
Query: 3015 EANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 3194
E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+ YL KS +
Sbjct: 1084 ETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLIN 1143
Query: 3195 GERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRR 3374
G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VML+GTMARYMR
Sbjct: 1144 GTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRW 1203
Query: 3375 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAK 3554
FR A P + INCE TP+D+S W LN W+FS+PS AND+TAFDQSQDGAMLQFE+LKAK
Sbjct: 1204 FRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAK 1263
Query: 3555 YFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTA 3734
+ +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTA
Sbjct: 1264 HHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTA 1323
Query: 3735 QIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDP 3914
Q+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+LITPKG++KDP
Sbjct: 1324 QVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDP 1383
Query: 3915 LKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 4052
+KLH SL+LA+A K + +Y +D AY D L DL
Sbjct: 1384 IKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDL 1423
>dbj|BAB83122.1| RNA dependent RNA polymerase [Potato virus X]
Length = 1456
Score = 1221 bits (3158), Expect = 0.0
Identities = 674/1426 (47%), Positives = 883/1426 (61%), Gaps = 78/1426 (5%)
Frame = +3
Query: 9 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 188
TD + K +IQDEAYR ++ + + + +NP+AQT EAA+ LE GI ++PY+I HTHAAA
Sbjct: 12 TDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTVEAANDLEGFGIATNPYSIELHTHAAA 71
Query: 189 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 368
K IE+ L EV+ LP+E PV+F+F+KP KL + R P D F N +EP+DV RYP++
Sbjct: 72 KTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKE 130
Query: 369 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 548
T+I +L I T+ A++ DTLHFL PS++ F + PKLQTLYATLVLP EA +++ S +P
Sbjct: 131 TIIDKLTEITTDTAYISDTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHP 190
Query: 549 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG-------------HLTAANQP-- 683
IY+L Y DGF YIPG H G +Y H++ L+WL VG HL +
Sbjct: 191 NIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQWLKVGKIKWRDPKDGFLGHLNYTTEQVE 250
Query: 684 --TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKT 857
T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+ +NC+ PI K
Sbjct: 251 MHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKK 310
Query: 858 IMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF 1037
MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y EF A L + TCF
Sbjct: 311 TMMQLFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCF 370
Query: 1038 EDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR--- 1208
D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F V T + R
Sbjct: 371 SDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHP 430
Query: 1209 LRGPPGFH--------------------NPFTK--PHPVNPD-DADTMRAFREFSYTSET 1319
L+ F + FT+ + VN + D +R E E
Sbjct: 431 LQAWKAFRPREVSDVEEMESLFSDGDLLDCFTRMPSYAVNAEEDLAAIRKTPEMDVGQEV 490
Query: 1320 STPTTIADSLEGSAENLASHT----SLKVGHADLST--------EQLRALHELGNTRLGG 1463
P + AE + S +V H + E +RA E G+ + G
Sbjct: 491 KEPAGDRNQYSNPAETFLNKLHRKHSREVKHQAVKKAKRLAEIQESMRAEGEAGSNEMSG 550
Query: 1464 PL--------LPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNSDPAT--- 1610
+ LP + Q+ AS + +QV + A
Sbjct: 551 GMGAIPSNAELPSTSDARQELILPVNKPVPARWEDASLT-DSSVEEEQVKLPGKEAVETA 609
Query: 1611 -------LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPG 1766
LPW W+P+LNA+GF+ALEIQ D S G +IMPIT+ V L K PE G
Sbjct: 610 TQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GTIIMPITEMVSGLEKEDFPE-----G 663
Query: 1767 LSKVLTT-LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 1943
K L L ++NR P + D RAR + SDVKN R G + +W E T +++
Sbjct: 664 TPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQATSWGEYLTGKIESL 723
Query: 1944 TAN-LAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWLKKLPHNPPEQF 2117
+A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW KK+P+ P F
Sbjct: 724 NERKVATCVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMF 783
Query: 2118 RTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 2297
+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQS +HE E+A
Sbjct: 784 KTYEKALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVYHETAEDAS 843
Query: 2298 ISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVP 2477
I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++ + G+ LVP
Sbjct: 844 IRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSAEFLEGIPTLVP 903
Query: 2478 SLVKKAAFTDAGHKVS-TYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFV 2654
S K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTALSRA D IHFV
Sbjct: 904 SDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTALSRATDRIHFV 963
Query: 2655 NSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTL 2834
N++A SSAFWEKL++TPYLKTFLS+VRE + E+ VE++ + L
Sbjct: 964 NTSANSSAFWEKLDSTPYLKTFLSVVREQALKEYEPAEAEPIREPEPQTHMRVENEESVL 1023
Query: 2835 DDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTP 3014
+++KE L +KF+REI +E+HGH+NCVQ ++ T QLFSHQQAKDE LLW TI ARL S
Sbjct: 1024 EEYKEELLEKFDREIHSESHGHSNCVQTENTTIQLFSHQQAKDETLLWATIDARLKTSNQ 1083
Query: 3015 EANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 3194
E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+ YL KS +
Sbjct: 1084 ETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLIN 1143
Query: 3195 GERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRR 3374
G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VML+GTMARYMR
Sbjct: 1144 GTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRW 1203
Query: 3375 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAK 3554
FR A P + INCE TP+D+S W LN WDFS+PS AND+TAFDQSQDGAMLQFE+LKAK
Sbjct: 1204 FRQAFQPKEVFINCETTPEDMSAWALNNWDFSRPSLANDYTAFDQSQDGAMLQFEVLKAK 1263
Query: 3555 YFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTA 3734
+ +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTA
Sbjct: 1264 HHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTA 1323
Query: 3735 QIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDP 3914
Q+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+LITPKG++KDP
Sbjct: 1324 QVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDP 1383
Query: 3915 LKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 4052
+KLH SL+LA+A K + +Y +D AY D L DL
Sbjct: 1384 IKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDL 1423
>sp|P09395.1|RDRP_PVX RecName: Full=RNA replication protein; AltName: Full=165 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|309911|gb|AAA47167.1| RNA-replicating
protein [Potato virus X]
Length = 1456
Score = 1207 bits (3123), Expect = 0.0
Identities = 674/1426 (47%), Positives = 881/1426 (61%), Gaps = 78/1426 (5%)
Frame = +3
Query: 9 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 188
TD + K +IQDEAYR ++ + + + +NP+AQT EAA+ LE GI ++PY+I HTHAAA
Sbjct: 12 TDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTVEAANDLEGFGIATNPYSIELHTHAAA 71
Query: 189 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 368
K IE+ L EV+ LP+E PV+F+F+KP KL + R P D F N +EP+DV RYP++
Sbjct: 72 KTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKDIFHNVAIEPRDVARYPKE 130
Query: 369 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 548
T+I +L I T+ A++GDTLHFL PS++ F + PKLQTLYATLVLP EA +++ S +P
Sbjct: 131 TIIDKLTEITTDTAYIGDTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHP 190
Query: 549 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV-------------GHLTAANQP-- 683
IY+L Y DGF YIPG H G +Y H++ L+WL V GHL +
Sbjct: 191 NIYSLKYFGDGFQYIPGNHGGGAYHHEFSHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVE 250
Query: 684 --TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKT 857
T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+ +NC+ PI K
Sbjct: 251 MHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKK 310
Query: 858 IMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF 1037
MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y EF A L + TCF
Sbjct: 311 TMMQLFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCF 370
Query: 1038 EDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR--- 1208
D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F V T + R
Sbjct: 371 SDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHP 430
Query: 1209 LRGPPGFH--------------------NPFTK--PHPVN-PDDADTMRAFREFSYTSET 1319
L+ F + FT+ + VN +D +R E E
Sbjct: 431 LQAWKAFRPREVSDVEEMENLFSDGDLLDCFTRMPAYAVNAEEDLAAIRKTPEMDAGQEV 490
Query: 1320 STPTTIADSLEGSAENLASHT----SLKVGHADLS--------TEQLRALHELGNTRLGG 1463
P + AE S S +V H E +RA E + + G
Sbjct: 491 KEPAGDRNQYSNPAETFLSKLHRKHSREVKHQAAKKAKRLAEIQESMRAEGEAESNEMSG 550
Query: 1464 PL--------LPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNS----DPA 1607
+ LP + Q+ AS + +QV + + A
Sbjct: 551 GMGAIPSNAELPSTSGARQELTLPTTKPVPARWEDASFT-DSSVEEEQVKLPGKEAVETA 609
Query: 1608 TLPWVAWLP------KLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPG 1766
T + LP +LNA+GF+ALEIQ D S G +IMPIT+ V L K PE G
Sbjct: 610 TQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GTMIMPITEMVSGLEKEDFPE-----G 663
Query: 1767 LSKVLT-TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 1943
K L L ++NR P + D RAR + SDVKN R G + +W E T +++
Sbjct: 664 TPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQAASWGEYLTGKIESL 723
Query: 1944 T-ANLAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWLKKLPHNPPEQF 2117
T +A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW KK+P+ P F
Sbjct: 724 TERKVAACVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMF 783
Query: 2118 RTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 2297
+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQS +HE E+A
Sbjct: 784 KTYEKALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVYHETAEDAS 843
Query: 2298 ISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVP 2477
I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++ + G+ LVP
Sbjct: 844 IRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSAEFLEGIPTLVP 903
Query: 2478 SLVKKAAFTDAG-HKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFV 2654
S K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTALSRA D IHFV
Sbjct: 904 SDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTALSRATDRIHFV 963
Query: 2655 NSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTL 2834
N++A SSAFWEKL++TPYLKTFLS+VRE + E+ VE++ + L
Sbjct: 964 NTSANSSAFWEKLDSTPYLKTFLSVVREQALKEYEPAEAEPIREPEPQTHMCVENEESVL 1023
Query: 2835 DDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTP 3014
+++KE L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL S
Sbjct: 1024 EEYKEELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQ 1083
Query: 3015 EANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 3194
E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+ YL KS +
Sbjct: 1084 ETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLIN 1143
Query: 3195 GERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRR 3374
G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VML+GTMARYMR
Sbjct: 1144 GTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRW 1203
Query: 3375 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAK 3554
FR A P + INCE TP+D+S W LN W+FS+PS AND+TAFDQSQDGAMLQFE+LKAK
Sbjct: 1204 FRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAK 1263
Query: 3555 YFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTA 3734
+ +PE +I+ Y+DIK + IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTA
Sbjct: 1264 HHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTA 1323
Query: 3735 QIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDP 3914
Q+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+LITPKG++KDP
Sbjct: 1324 QVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDP 1383
Query: 3915 LKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDL 4052
+KLH SL+LA+A K + +Y +D AY D L DL
Sbjct: 1384 IKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDL 1423
>dbj|BAJ12046.1| RNA dependent RNA polymerase [Potato virus X]
Length = 1456
Score = 1199 bits (3102), Expect = 0.0
Identities = 671/1428 (46%), Positives = 881/1428 (61%), Gaps = 78/1428 (5%)
Frame = +3
Query: 9 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 188
TD + K +IQDEAYR ++ + + + +NP AQT EAA+ LE GI ++PY+I HTHAAA
Sbjct: 12 TDSTTKTLIQDEAYRNIRPIMEKHKLANPHAQTVEAANDLEGFGIATNPYSIELHTHAAA 71
Query: 189 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 368
K IE+ L EV+ LP+E PV+F+F+KP KL + R P F N +EP+DV RYP++
Sbjct: 72 KTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKAIFHNVAIEPRDVARYPKE 130
Query: 369 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 548
T+I +L I T+ A++ +TLHFL PS++ F + PKLQTLYATLVLP EA +++ S +P
Sbjct: 131 TIIDKLTEITTDTAYISNTLHFLDPSYIVETFQNCPKLQTLYATLVLPVEAAFKMESTHP 190
Query: 549 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV-------------GHLTAANQP-- 683
IY+L Y DGF YIPG H G +Y H++ L+WL V GHL +
Sbjct: 191 NIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQWLKVGKIKWRDPKDSFLGHLNYTTEQVE 250
Query: 684 --TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKT 857
T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+ +NC+ PI K
Sbjct: 251 MHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPKVHNCKKPILKK 310
Query: 858 IMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCF 1037
MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y EF A L + TCF
Sbjct: 311 TMMQLFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYMEFLADLQATTCF 370
Query: 1038 EDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR--- 1208
D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F V T + R
Sbjct: 371 SDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSFKVETWDFRFHP 430
Query: 1209 LRGPPGFH--------------------NPFTK--PHPVN-PDDADTMRAFREFSYTSET 1319
L+ F + FT+ + VN +D +R E E
Sbjct: 431 LQAWKAFRPREVSDVEEMESLFSDGDLLDCFTRMPAYAVNAEEDLAAIRKAPEMDVGQEV 490
Query: 1320 STPTTIADSLEGSAE----NLASHTSLKVGHADLS--------TEQLRALHELGNTRLGG 1463
P + AE L S +V H + E +RA E + + G
Sbjct: 491 KEPAGDRNQYSNPAETFLNKLHRKHSREVKHQAVKKAKRLAEIQESMRAEGEAESNEMSG 550
Query: 1464 PL--------LPKITPEEQDREXXXXXXXXXXXTKASAALNQGDHTDQVPVNS----DPA 1607
+ LP + Q+ AS + +QV + + A
Sbjct: 551 GMGAIPSNAELPSTSDARQELTLPTTIPVPARWEDASFT-DSSVEEEQVKLPGKEAVETA 609
Query: 1608 TLPWVAWLP------KLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLPEHWNEPG 1766
T + LP +LNA+GF+ALEIQ D S G +IMPIT+ V L K PE G
Sbjct: 610 TQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GTMIMPITEMVSGLEKEDFPE-----G 663
Query: 1767 LSKVLT-TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 1943
K L L ++NR P + D RAR + SDVKN R G + +W E T +++
Sbjct: 664 TPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQAASWGEYLTGKIESL 723
Query: 1944 T-ANLAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWLKKLPHNPPEQF 2117
T +A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW KK+P+ P F
Sbjct: 724 TERKVATCVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWSKKVPNTEPYMF 783
Query: 2118 RTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEAL 2297
+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQS +HE E+A
Sbjct: 784 KTYEKALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQSVYHETAEDAS 843
Query: 2298 ISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVP 2477
I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++ + G+ LVP
Sbjct: 844 IRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSAEFLEGIPTLVP 903
Query: 2478 SLVKKAAFTDAG-HKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFV 2654
S K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTALSRA D IHFV
Sbjct: 904 SDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTALSRATDRIHFV 963
Query: 2655 NSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXXVEDKTTTL 2834
N++A SSAFWEKL++TPYLKTFLS+VRE + E+ VE++ + L
Sbjct: 964 NTSANSSAFWEKLDSTPYLKTFLSVVREQALREYEPAEAEPIREPEPQTHMCVENEESVL 1023
Query: 2835 DDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTP 3014
+++KE L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW TI ARL S
Sbjct: 1024 EEYKEELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLKTSNQ 1083
Query: 3015 EANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKG 3194
E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+ YL KS +
Sbjct: 1084 ETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSKYLSKSKCNLIN 1143
Query: 3195 GERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRR 3374
G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VML+GTMARYMR
Sbjct: 1144 GTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVMLFGTMARYMRW 1203
Query: 3375 FRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAK 3554
FR A P + INCE TP+D+S W LN W+FS+PS AND+TAFDQSQDGAMLQFE+LKAK
Sbjct: 1204 FRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAK 1263
Query: 3555 YFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTA 3734
+ +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYTHT+F+IP GTA
Sbjct: 1264 HHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTA 1323
Query: 3735 QIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDP 3914
Q+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+LITPKG++KDP
Sbjct: 1324 QVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDP 1383
Query: 3915 LKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLS 4058
+KLH SL+LA+A K + +Y +D AY D L DL +
Sbjct: 1384 IKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFN 1425
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 1055 bits (2727), Expect = 0.0
Identities = 523/668 (78%), Positives = 566/668 (84%), Gaps = 1/668 (0%)
Frame = +3
Query: 3 QLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHA 182
QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHPYAITPHTHA
Sbjct: 10 QLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHPYAITPHTHA 69
Query: 183 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYP 362
AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYP
Sbjct: 70 AAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYP 129
Query: 363 QDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 542
Q+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL
Sbjct: 130 QETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL 189
Query: 543 YPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGAN 722
+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA T+TAQRLETKGAN
Sbjct: 190 HPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGAN 249
Query: 723 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEA 902
HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMFFYIKSVKEA
Sbjct: 250 HLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEA 309
Query: 903 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRP 1082
KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRP
Sbjct: 310 KERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRP 369
Query: 1083 LRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVN 1262
L S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVN
Sbjct: 370 LTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVN 429
Query: 1263 PDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHEL 1442
PDDA+T +F+ F + + +LE AE H SL++ LS QL ALH+L
Sbjct: 430 PDDAETTHSFQAFCQAA-----AAVETTLEQQAETPDEHQSLRLDCPTLSEHQLWALHKL 484
Query: 1443 GNTRLGGPLLPKITPEEQDREXXXXXXXXXXXTKASAALNQ-GDHTDQVPVNSDPATLPW 1619
GN R GGPLLP+ T A+ +Q +P DP TLPW
Sbjct: 485 GNARCGGPLLPQ---RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPW 541
Query: 1620 VAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSKVLTTLRSL 1799
VAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A P HW P + ++++TLRSL
Sbjct: 542 VAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRSL 601
Query: 1800 NRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANLAISVIHGA 1979
NR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++ NLAISVIHGA
Sbjct: 602 NRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGA 661
Query: 1980 GGSGKSQA 2003
GGSGKSQA
Sbjct: 662 GGSGKSQA 669
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 929 bits (2402), Expect = 0.0
Identities = 473/841 (56%), Positives = 590/841 (70%), Gaps = 1/841 (0%)
Frame = +3
Query: 1539 TKASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPST-GEVIMPITD 1715
T+ S G H P N P LPW W+PKLNALGF L +DP ++I PIT
Sbjct: 846 TETSVRDASGFHVAPPPENPAPP-LPWEQWIPKLNALGFSGLARISDPQDKDQLICPITC 904
Query: 1716 VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHR 1895
++ LPE + + +LTT+ +R P ++ + +RA+A+ SDV+NSRTG L
Sbjct: 905 IKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRS 961
Query: 1896 ETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 2075
+ WKE TM + +A+SVIHGAGGSGKS ALQ L+R+NP+L VV PTNELRL
Sbjct: 962 QPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRL 1021
Query: 2076 DWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 2255
DWL KLP + +TFE+A S + +IF DY KLP GYIE + + L ILTGD
Sbjct: 1022 DWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGD 1081
Query: 2256 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 2435
PRQS++HE+NE A+IS+LAP+T+ F + RYYINATHRN + LA LGVYS + ++
Sbjct: 1082 PRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSIS 1141
Query: 2436 YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 2615
+P HLLVPS++KK + + G+K STYAGCQGITAP++QILLD DTT+C EVLY
Sbjct: 1142 MSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLY 1201
Query: 2616 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 2795
TALSRAV IHF+N+ A S AFW+KL ATPYLKTFL RE+++ E
Sbjct: 1202 TALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGP 1261
Query: 2796 XXXXXVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 2975
VE++ L++ E L +K +REI HGHTNCVQ +D QLFSHQQAKD+ALL
Sbjct: 1262 TTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALL 1321
Query: 2976 WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 3155
W TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP + F EDLW CA+EVQ
Sbjct: 1322 WATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQ 1381
Query: 3156 NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 3335
TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ A
Sbjct: 1382 GTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSA 1441
Query: 3336 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 3515
VMLYGTMARYMRR R+A P IMINCEK PQ LS W+ NYW F+ +YANDFT FDQSQ
Sbjct: 1442 VMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQ 1501
Query: 3516 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIA 3695
DGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIA
Sbjct: 1502 DGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIA 1561
Query: 3696 YTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFC 3875
YTH RF++P+GTAQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFC
Sbjct: 1562 YTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFC 1621
Query: 3876 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLL 4055
GYLITP G++KDP KL A++ LA+ Q K + +++LD KLAY D L ++L
Sbjct: 1622 GYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVL 1675
Query: 4056 S 4058
S
Sbjct: 1676 S 1676
Score = 421 bits (1082), Expect = e-114
Identities = 217/399 (54%), Positives = 278/399 (69%), Gaps = 1/399 (0%)
Frame = +3
Query: 9 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 188
TDP++K V+Q++ Y+ K+ +A+T+ SNP+A AD LE L I S+P+AI HTHAAA
Sbjct: 12 TDPAVKVVLQNDHYQEFKKTMARTKLSNPYALKETEADTLENLEILSNPFAIETHTHAAA 71
Query: 189 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 368
KAIE+DLY V SH LP E P++FLFMK KL F RGP GD FLN VEPKD+ RYP+D
Sbjct: 72 KAIENDLYFVASHQLPAE-PITFLFMKRNKLAQFRRGPQQGDIFLNKIVEPKDIARYPED 130
Query: 369 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 548
T+I L ++ T +AFMGDTLHFLS F+ LF + LQTL AT+VLP EA YR+ SL+P
Sbjct: 131 TLIDSL-HVNTEVAFMGDTLHFLSFHFLGRLFHLNKNLQTLVATMVLPAEAKYRMASLHP 189
Query: 549 QIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITAQRLETKGANH 725
+YTL+Y E F+Y PGGH GA Y H + QL+WL VG + NQ ITAQR+E+K ANH
Sbjct: 190 NVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IITAQRIESKAANH 248
Query: 726 LFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMFFYIKSVKEAK 905
LF+FQRGN TP R F T + YVT+P IFLP+++N R PI KT++MQ+F Y+K V +
Sbjct: 249 LFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQIFTYVKGVAKVT 308
Query: 906 ERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPL 1085
ERDI+AK RQLI T +LQ + SE+ +VNYF F A DS TCF D+LSG+L ++L +PL
Sbjct: 309 ERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILSGSLFKKLFQPL 368
Query: 1086 RSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 1202
+ + F G P F KL+KAL WQ IT+ V +N
Sbjct: 369 AAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407