BLASTX nr result
ID: Ephedra27_contig00012095
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00012095
(2358 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 329 e-128
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 329 e-127
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 326 e-125
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 317 e-121
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana] 330 e-120
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 302 e-119
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 318 e-116
gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza... 311 e-114
emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera] 319 e-114
gb|ABA95820.1| retrotransposon protein, putative, unclassified [... 312 e-110
gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157... 296 e-110
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi... 294 e-109
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 289 e-108
gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum ... 281 e-106
emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera] 280 e-106
emb|CAB75932.1| putative protein [Arabidopsis thaliana] 287 e-104
gb|ABW74566.1| integrase [Boechera divaricarpa] 290 e-104
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768... 292 e-103
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 290 e-102
emb|CAD41731.1| OSJNBb0034I13.10 [Oryza sativa Japonica Group] 272 e-101
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 329 bits (844), Expect(3) = e-128
Identities = 193/578 (33%), Positives = 311/578 (53%), Gaps = 3/578 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A AVYLLN P KS+ K P + ++ P HLR+F S H+P E R KLD KSE
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY N+KGY ++NP K IISR+++F+E+ N + E+
Sbjct: 719 KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 774
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1187
EP+P+ + +P PT T +++ S ++ PR+
Sbjct: 775 ---EPEPTREEPPSEEPTTP--PTSPTSSQIEESSS-------ERTPRF----------- 811
Query: 1186 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1007
S Q + T+ EN+ E E + F++A W + +E + + + DTWEL
Sbjct: 812 RSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 1006 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 827
LP KAIG KWV K N++G +E++KARLVAK ++Q+ GIDY E FAP +++T+R +
Sbjct: 872 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931
Query: 826 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXAP 653
I LA + W+I +D+K AFL+G++ +E+Y++QP+G+I + + AP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991
Query: 652 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 473
RAW +++ + + IK + L Y+ +K +I ++DD+ TG N + FKK
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050
Query: 472 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 293
E+ FE+T +G YYLGI++ + + + E Y +++L F+ + TP++ G+
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1110
Query: 292 NLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 116
L K E + + T++S++ SL YLT TR DI +A+ +SR+M+ P+ KAA+ IL+
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170
Query: 115 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
Y+K T+N GL + S KL + D+++ D K+T
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKST 1208
Score = 99.0 bits (245), Expect(3) = e-128
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Frame = -3
Query: 2314 LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 2144
+C++E + +WH R GH+N + L + E + P + PN C C + K K FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518
Query: 2143 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
SS RAQ+PLEL+H D+ GP++ K YFL+FIDD+ + WVY L+ K
Sbjct: 519 SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568
Score = 80.5 bits (197), Expect(3) = e-128
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K + FK F+ V+ ++ + T+RSD G + T KE + +C GI +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIK 1740
QNGVV+R+N+TI+EM RSML +L K
Sbjct: 627 QNGVVERKNRTILEMARSMLKSKRLPK 653
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 329 bits (843), Expect(3) = e-127
Identities = 193/578 (33%), Positives = 311/578 (53%), Gaps = 3/578 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A AVYLLN P KS+ K P + ++ P HLR+F S H+P E R KLD KSE
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY N+KGY ++NP K IISR+++F+E+ N + E+
Sbjct: 719 KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 774
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1187
EP+P+ + +P PT T +++ S ++ PR+
Sbjct: 775 ---EPEPTREEPPSEEPTTP--PTSPTSSQIEESSS-------ERTPRF----------- 811
Query: 1186 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1007
S Q + T+ EN+ E E + F++A W + +E + + + DTWEL
Sbjct: 812 RSIQELYEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 1006 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 827
LP KAIG KWV K N++G +E++KARLVAK ++Q+ GIDY E FAP +++T+R +
Sbjct: 872 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931
Query: 826 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXAP 653
I LA + W+I +D+K AFL+G++ +E+Y++QP+G+I + + AP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991
Query: 652 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 473
RAW +++ + + IK + L Y+ +K +I ++DD+ TG N + FKK
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050
Query: 472 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 293
E+ FE+T +G YYLGI++ + + + E Y +++L F+ + TP++ G+
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGI 1110
Query: 292 NLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 116
L K E + + T++S++ SL YLT TR DI +A+ +SR+M+ P+ KAA+ IL+
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170
Query: 115 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
Y+K T+N GL + S KL + D+++ D K+T
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKST 1208
Score = 99.0 bits (245), Expect(3) = e-127
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Frame = -3
Query: 2314 LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 2144
+C++E + +WH R GH+N + L + E + P + PN C C + K K FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518
Query: 2143 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
SS RAQ+PLEL+H D+ GP++ K YFL+FIDD+ + WVY L+ K
Sbjct: 519 SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568
Score = 80.5 bits (197), Expect(3) = e-127
Identities = 38/87 (43%), Positives = 57/87 (65%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K + FK F+ V+ ++ + T+RSD G + T KE + +C GI +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIK 1740
QNGVV+R+N+TI+EM RSML +L K
Sbjct: 627 QNGVVERKNRTILEMARSMLKSKRLPK 653
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 326 bits (835), Expect(3) = e-125
Identities = 192/578 (33%), Positives = 308/578 (53%), Gaps = 3/578 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A AVYLLN P KS+ K P + ++ HLR+F S H+P E R KLD KSE
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 718
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY N+KGY ++NP K IISR+++F+E+ N + E+
Sbjct: 719 KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 774
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1187
EP+P+ + +P PT T +++ S ++ PR+
Sbjct: 775 ---EPEPTREEPPSEEPTTP--PTSPTSSQIEESSS-------ERTPRF----------- 811
Query: 1186 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1007
S Q + T+ EN+ E E + F+EA W + +E + + + DTWEL
Sbjct: 812 RSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 1006 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 827
LP K IG KWV K N++G +E++KARLVAK + Q+ GIDY E FAP +++T+R +
Sbjct: 872 LPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLI 931
Query: 826 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXAP 653
I LA + W+I +D+K AFL+G++ +E+Y++QP+G+I + + AP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 991
Query: 652 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 473
RAW +++ + + IK + L Y+ +K +I ++DD+ TG N + FKK
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 1050
Query: 472 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 293
E+ FE+T +G YYLGI++ + + + E Y +++L F+ + TP++ G+
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1110
Query: 292 NLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 116
L K E + + T++S++ SL YLT TR DI +A+ +SR+M+ P+ KAA+ IL+
Sbjct: 1111 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1170
Query: 115 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
Y+K T+N GL + S KL + D+++ D K+T
Sbjct: 1171 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKST 1208
Score = 95.9 bits (237), Expect(3) = e-125
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Frame = -3
Query: 2314 LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 2144
+C++E + +WH R GH+N + L + E + P + PN C C + K K FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 518
Query: 2143 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
SS RAQ+ LEL+H D+ GP++ K YFL+FIDD+ + WVY L+ K
Sbjct: 519 SSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568
Score = 79.0 bits (193), Expect(3) = e-125
Identities = 37/87 (42%), Positives = 56/87 (64%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K + FK F+ V+ ++ + T+RSD G + T KE + +C GI +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIK 1740
QNGV +R+N+TI+EM RSML +L K
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPK 653
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 317 bits (812), Expect(3) = e-121
Identities = 198/593 (33%), Positives = 318/593 (53%), Gaps = 18/593 (3%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKC-PLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKS 1550
A T+ YL N P+KS+ P+++++ PS DHL++F C+ HIP E R+KLD K+
Sbjct: 648 AIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKA 707
Query: 1549 EIGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK-DEINSKTLTKILSMLENKE 1373
+ G+F+GY +KGY ++ E K +S+DV F+E KT DE + L + ++E
Sbjct: 708 KQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEKKTWSHDEKGERKAILSLVKINSQE 767
Query: 1372 -----DIITPEPQPSN--------KRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKK 1232
D+ Q SN R V N EE GE +SV
Sbjct: 768 QGGGNDLNAHIDQVSNAFNQLHISSRGVQNSHEE---------GE---ESV--------- 806
Query: 1231 KPRWYRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQK 1052
PR +R I N +T+ + I+ ++ EE + +EA + KW +++
Sbjct: 807 GPRGFRSINNLMDQTNEVEGEAL-------IHEMCLMMAEEPQALEEAMKDEKWIEAMRE 859
Query: 1051 EYEMLVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYS 872
E M+ + TWE++ P ++ I KW+ K +A G K KARLVA+ F Q+ G+DY
Sbjct: 860 ELRMIEKNKTWEVVARPKDKNVISVKWIFRLKTDASGEAIKRKARLVARGFTQEYGVDYL 919
Query: 871 EKFAPTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNX 698
E FAP + TIRT++ +A GW++ +D+K AFL+G++ +E+Y++QP GFI K+
Sbjct: 920 ETFAPVSRYDTIRTIMAIAAQQGWKLFQMDVKSAFLNGDLEEEVYIEQPPGFIEEKEEGK 979
Query: 697 XXXXXXXXXXXXXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDI 518
APRAWY +++ + I G +S D+ FY+ + ++ + ++DDI
Sbjct: 980 VLKLHKALYGLKQAPRAWYGRIDGYFIKNGFERSINDA-AFYVKKTSKEILVVSLYVDDI 1038
Query: 517 FLTGQNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQ 338
+TG N +I FK+E+++ FE+T LG Y+LG+++ + E + L E Y +KLL F
Sbjct: 1039 IVTGSNVKEIERFKEEMKNEFEMTDLGELSYFLGMEVNQDDEGIFLSQENYAKKLLKKFG 1098
Query: 337 EEKEKGRKTPLDPGVNLLKNNEVKANAVT-YRSIIRSLLYLTYTRSDIHFAICYLSRFMQ 161
++ K TPL P + + K VT YRS+I +LYL +R DI +A YLSR+M+
Sbjct: 1099 MQECKSVSTPLTPHGKIEEVLSEKLEDVTMYRSMIGGMLYLCASRPDIMYASSYLSRYMR 1158
Query: 160 EPSELQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
P + L+ A+ +L+YVK T+ G+ F+++ +L F D+++ D K+T
Sbjct: 1159 SPLKQHLQEAKRVLRYVKGTLTYGIHFKRVEKPELVGFSDSDWAGSVEDKKST 1211
Score = 85.1 bits (209), Expect(3) = e-121
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 6/127 (4%)
Frame = -3
Query: 2344 VLEKLRDEVMLCHEENNL---IWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHC 2183
+ +K R+E + EE +WH R GHVN + ++ L+ + K P + C C
Sbjct: 435 IWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEVIKGICAAC 494
Query: 2182 CISKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLL 2003
+ K + FP++S + LEL+H D+ GPM+ RYFL FIDD+ +M WVY L
Sbjct: 495 EMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFL 554
Query: 2002 QRKYQFL 1982
+ K + +
Sbjct: 555 KNKSEVI 561
Score = 84.7 bits (208), Expect(3) = e-121
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
Frame = -2
Query: 1997 KIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQ 1818
K ++ FK+F+ V+NQ+ ++ LR+D G + +E + C + GI E+T PY+PQQ
Sbjct: 557 KSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQ 616
Query: 1817 NGVVKRRNKTIVEMMRSMLNHAKLI-KGWELCMSYSCIL 1704
NGV +RRN+T+VEM RSM+ KL K W ++ S L
Sbjct: 617 NGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYL 655
>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 330 bits (845), Expect(3) = e-120
Identities = 194/578 (33%), Positives = 310/578 (53%), Gaps = 3/578 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A AVYLLN P KS+ K P + ++ P HLR+F S H+P E R KLD KSE
Sbjct: 598 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSE 657
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY N+KGY ++NP K IISR+++F+E+ N + E+
Sbjct: 658 KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEED---- 713
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1187
EP+P+ + +P + PT T +++ S ++ PR+
Sbjct: 714 ---EPEPTREEPPSEEPTTR--PTSLTSSQIEESSS-------ERTPRF----------- 750
Query: 1186 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1007
S Q + T+ EN+ E E + F+EA W + +E + + + DTWEL
Sbjct: 751 RSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 810
Query: 1006 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 827
LP KAIG KWV K N++G +E++KARLVAK ++Q+ GIDY E FAP +++T+R +
Sbjct: 811 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLI 870
Query: 826 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXAP 653
I LA + W+I +D K AFL+G+ +E+Y++QP+G+I + + AP
Sbjct: 871 ISLAAQNKWKIHQMDFKLAFLNGDFEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 930
Query: 652 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 473
RAW +++ + + IK + L Y+ +K +I ++DD+ TG N + FKK
Sbjct: 931 RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 989
Query: 472 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 293
E+ FE+T +G YYLGI++ + + + E Y +++L F+ + TP++ G+
Sbjct: 990 EMTKEFEMTDIGLMSYYLGIEVKQEDNRIFITQEGYAKEVLKKFKMDDSNPVCTPMECGI 1049
Query: 292 NLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILK 116
L K E + + T++S++ SL YLT TR DI +A+ +SR+M+ P+ KAA+ IL+
Sbjct: 1050 KLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILR 1109
Query: 115 YVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
Y+K T+N GL + S KL + D+++ D K+T
Sbjct: 1110 YIKGTVNFGLHYSTTSDYKLVGYSDSDWGRDVDDRKST 1147
Score = 79.0 bits (193), Expect(3) = e-120
Identities = 37/87 (42%), Positives = 56/87 (64%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K + FK F+ V+ ++ + T+RSD G + T KE + +C GI +LT+P +PQ
Sbjct: 506 EKSEVFKIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 565
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIK 1740
QNGV +R+N+TI+EM RSML +L K
Sbjct: 566 QNGVAERKNRTILEMARSMLKSKRLPK 592
Score = 76.3 bits (186), Expect(3) = e-120
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Frame = -3
Query: 2314 LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 2144
+C++E + +WH R GH+N + L + E + P + PN C C + K K FP++
Sbjct: 421 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKE 480
Query: 2143 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIF 2042
SS RAQ+PLEL+H D+ GP++ +K F IF
Sbjct: 481 SSSRAQKPLELIHTDVCGPIKPKSLEKSEVFKIF 514
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 302 bits (774), Expect(3) = e-119
Identities = 185/559 (33%), Positives = 287/559 (51%), Gaps = 2/559 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A AVYLLN P KS+ K P + ++ P HLR+F S H+P E R KLD KSE
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSE 718
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY N+KGY ++NP K IISR+++F+E+ N + E+K +
Sbjct: 719 KYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEP 778
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1187
EP PS E PT T +++ S ++ PR+
Sbjct: 779 TREEP-PSE--------EPTTPPTSPTSSQIEESSS-------ERTPRF----------- 811
Query: 1186 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1007
S Q + T+ EN+ E E + F+EA W + +E + + + DTWEL
Sbjct: 812 RSIQELYEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTS 871
Query: 1006 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 827
LP KAIG KWV K N++G +E++KARLVAK ++Q+ GIDY E FAP +++T+R +
Sbjct: 872 LPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLI 931
Query: 826 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXAP 653
I LA + W+I +D+K AFL+G++ +E+Y++QP+G+I + + AP
Sbjct: 932 ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991
Query: 652 RAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKK 473
RAW +++ + + IK + L Y+ +K +I ++DD+ TG N + FKK
Sbjct: 992 RAWNTRIDKYFKEKDFIKCPYEHAL-YIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 1050
Query: 472 ELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGV 293
E+ FE+T +G YYLGI++ + + + E Y +++L F+ +
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSN---------- 1100
Query: 292 NLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKY 113
S++ SL YLT TR DI +A+ +SR+M+ P+ KAA+ IL+Y
Sbjct: 1101 ---------------PSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRY 1145
Query: 112 VKETINLGLPFEKISPLKL 56
+K T+N GL + S KL
Sbjct: 1146 IKGTVNFGLHYSTTSDYKL 1164
Score = 97.1 bits (240), Expect(3) = e-119
Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Frame = -3
Query: 2314 LCHEENNLIWHNRLGHVNS---KYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQ 2144
+C++E + +WH R GH+N + L + E + P + PN C C + K FP++
Sbjct: 459 MCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKE 518
Query: 2143 SSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
SS RAQ+PLEL+H D+ GP++ K YFL+FIDD+ + WVY L+ K
Sbjct: 519 SSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEK 568
Score = 79.3 bits (194), Expect(3) = e-119
Identities = 37/87 (42%), Positives = 57/87 (65%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K + FK F+ V+ ++ + T+RSD+G + T KE + +C GI +LT+P +PQ
Sbjct: 567 EKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQ 626
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIK 1740
QNGV +R+N+TI+EM RSML +L K
Sbjct: 627 QNGVAERKNRTILEMARSMLKSKRLPK 653
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 318 bits (814), Expect(3) = e-116
Identities = 193/589 (32%), Positives = 312/589 (52%), Gaps = 17/589 (2%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TAVY+LN P K++ + P + + P H+R+F C+ +P + R K D+KS+ +
Sbjct: 652 TAVYILNRSPTKAVTNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCI 711
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLE-------- 1382
F+GY KGY ++N ++ K IISRD IF+E T + + T +L
Sbjct: 712 FVGYADGIKGYRLYNLEKKKIIISRDAIFDESATWNWKSPEASSTPLLPTTTITLGQPHM 771
Query: 1381 ---NKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRW 1220
++ + TP PQPS+ + +DS P++ + + PR
Sbjct: 772 HGTHEVEDHTPSPQPSSPM---------------SSSSASSDSSPSSEEQISTPESAPRR 816
Query: 1219 YRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEM 1040
R ++ + TS ++R N + + E SF+EA + W ++ E M
Sbjct: 817 VRSMVELLESTS-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHM 868
Query: 1039 LVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFA 860
+ + +TWEL+ P +R+ IG KWV K N +G ++K+KARLVAK F QKPGIDY E +A
Sbjct: 869 IEKNNTWELVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYA 928
Query: 859 PTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXX 686
P +++TIRT+I LA W+I LD+K AFL+G + +EIY++QPEGF N
Sbjct: 929 PVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRL 988
Query: 685 XXXXXXXXXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTG 506
APRAWY +++ + I +G KS ++ L Y+++ +I + ++DD+ TG
Sbjct: 989 KKALYGLKQAPRAWYSQIDKYFIQKGFAKSISEPTL-YVNKTGTDILIVSLYVDDLIYTG 1047
Query: 505 QNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKE 326
+ + FKK++ +E++ LG Y+LG+++ + E + + Y +L F+ +
Sbjct: 1048 NSEKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNC 1107
Query: 325 KGRKTPLDPG-VNLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSE 149
K TPL P ++ KA+ YRS++ SLLYLT TR DI FA LSR+M PS+
Sbjct: 1108 KSVTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQ 1167
Query: 148 LQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
L AA+ +L+Y+K T + G+ ++ + KL + D+++ D K+T
Sbjct: 1168 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKST 1216
Score = 80.9 bits (198), Expect(3) = e-116
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = -3
Query: 2290 IWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRP 2120
+WH R+GH+N + LK L + P + + ++ C C K + FP + RA P
Sbjct: 457 LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAP 516
Query: 2119 LELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
LELVH DI G + + + YF+ FIDDY +M WVY L+ K
Sbjct: 517 LELVHADIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEK 558
Score = 72.4 bits (176), Expect(3) = e-116
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K L FK F+ V+NQ+N+K+ LRSD G + KE +C GI +LT Y+ Q
Sbjct: 557 EKSAALEIFKKFKAMVENQSNRKIKVLRSDQGREYISKEFEKYCENAGIRRQLTAGYSAQ 616
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 1734
QNGV +R+N+TI +M SML + K +
Sbjct: 617 QNGVAERKNRTINDMANSMLQDKGMPKSF 645
>gb|AAL75752.1|AC037197_10 Putative copia-type polyprotein [Oryza sativa Japonica Group]
gi|31429795|gb|AAP51797.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1350
Score = 311 bits (796), Expect(3) = e-114
Identities = 190/579 (32%), Positives = 303/579 (52%), Gaps = 7/579 (1%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TA+Y+LN P K++ + P + + P H+R+F C+ +P + R K D+KS+ +
Sbjct: 575 TAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDWCI 634
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDIITP 1358
F+GY KGY ++N ++ K IISRDVIF+E T + + T +L I
Sbjct: 635 FVGYADGIKGYRLYNLEKKKIIISRDVIFDESATWNWKSPEASSTPLLPTTT----ITLG 690
Query: 1357 EPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRWYRDIINQTQET 1187
+P V + + + +DS P++ + + PR R ++ + T
Sbjct: 691 QPHMHGTHGVEDHTSSPQSSSPMSSSSASSDSSPSSEEQISTPESAPRRVRSMVELLEST 750
Query: 1186 SSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIV 1007
S ++R N + + E SF+EA + W ++ E M+ + +TWEL+
Sbjct: 751 S-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHMIEKNNTWELVD 802
Query: 1006 LPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTL 827
P +RK IG KWV K N +G ++K+KARLVAK F QKPGIDY E +AP +++TIRT+
Sbjct: 803 RPRDRKVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYAPVARLETIRTI 862
Query: 826 IILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXXAP 653
I LA W+I LD+K AFL+G + +EIY++QPEGF N AP
Sbjct: 863 IALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRLKKALYGLKQAP 922
Query: 652 RAWYEKLENHLITQGLIKS-GTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFK 476
RAWY +++ + I +G KS TD +I + ++DD+ T + + FK
Sbjct: 923 RAWYSQIDQYFIQKGFAKSISTDI------------LIVSLYVDDLIYTANSEKMMQDFK 970
Query: 475 KELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPG 296
K++ +E++ LG Y+LG+++ + E + + Y +L F+ + K TPL P
Sbjct: 971 KDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNYKSVTTPLLPN 1030
Query: 295 -VNLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNIL 119
++ KA+ YRS++ SLLYLT TR DI FA LSR+M PS+L AA+ +L
Sbjct: 1031 EKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLNFTAAKRVL 1090
Query: 118 KYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
+Y+K T + G+ ++ + KL + D+++ D K+T
Sbjct: 1091 RYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKST 1129
Score = 80.5 bits (197), Expect(3) = e-114
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = -3
Query: 2290 IWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRP 2120
+WH R+GH+N + LK L + P + + ++ C C K + FP + RA P
Sbjct: 380 LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIRASFPHSGAWRASAP 439
Query: 2119 LELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
LELVH DI G + + + YF+ FIDDY +M WVY L+ K
Sbjct: 440 LELVHTDIVGKVPTISEGGNWYFITFIDDYTRMIWVYFLKEK 481
Score = 72.8 bits (177), Expect(3) = e-114
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K L FK F+ V+NQ+N+K+ LRSD G + KE +C GI +LT Y+ Q
Sbjct: 480 EKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSAQ 539
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 1734
QNGV +R+N+TI +M SML + K +
Sbjct: 540 QNGVAERKNRTINDMANSMLQDKGMPKSF 568
>emb|CAN79061.1| hypothetical protein VITISV_024577 [Vitis vinifera]
Length = 1424
Score = 319 bits (817), Expect(3) = e-114
Identities = 190/582 (32%), Positives = 317/582 (54%), Gaps = 10/582 (1%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TAVYLLN P K++ K P++ ++ PS H ++F C+ +PK+ R KLD SE +
Sbjct: 727 TAVYLLNRCPTKALLNKTPIEAWSGRKPSVRHFKVFGCLCYSQVPKQRRSKLDETSEKCI 786
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDIITP 1358
F+GY +KGY ++N K K IISRDVIF+E E K L K + + +++ T
Sbjct: 787 FMGYSSQSKGYRLYNLKTXKLIISRDVIFDEKVAWNWE-EGKILKKTILV----DELQTK 841
Query: 1357 EP-QPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQETSS 1181
P + N + P+E SVP + I + T +SS
Sbjct: 842 APVETGNGSTSTSSPQESP------------RSVPLSP-----------SIESPTSXSSS 878
Query: 1180 TQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVLP 1001
T ++ + + ++ + L E SF+EA + W ++KE +++ + +TW+L+ P
Sbjct: 879 PSSTPRKMRSLTDVYERCNLCIVEPQSFEEAIKDEDWRKAMEKEIDVIEKNETWQLVEKP 938
Query: 1000 PERKAIGCKWVLS------KKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKT 839
+++ IG KW+ KY+++G +++ KARLVAK ++Q+PG D+ E FAP ++ T
Sbjct: 939 KDKEIIGVKWIFRVKWIFRXKYHSDGRVQRLKARLVAKGYSQQPGXDFHETFAPVARLDT 998
Query: 838 IRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXX 665
IRT+I +A GW + LDIK AFL+G++ EIY++QP+GF+ D N
Sbjct: 999 IRTIIAVAAQKGWLLYQLDIKSAFLNGKLEXEIYVEQPQGFVVDGEENKVYKLKKALYGL 1058
Query: 664 XXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKII 485
APRAWY +++++ I G I+S ++ L+ S++ ++ +I A ++DD+ TG + +
Sbjct: 1059 KQAPRAWYTQIDSYFIENGFIRSKSEPTLYVKSKDNSQILIVALYVDDLIFTGNDEKMVE 1118
Query: 484 FFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPL 305
F+ E+ +E++ +G Y+LGI++ + + + + + Y+ +L F TPL
Sbjct: 1119 KFRNEMMKKYEMSDMGLLHYFLGIEVYQEEDGVFICQKRYVEHILKKFGMAGCNXVSTPL 1178
Query: 304 DPGVNLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAAR 128
L K + K + +RS++ +LLYLT TR DI FA LSRFM PS L L AA+
Sbjct: 1179 VVNEKLRKEDGGKMVDETHFRSLVGNLLYLTATRPDIMFAASLLSRFMHYPSHLHLGAAK 1238
Query: 127 NILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
+L+Y++ T+ LG+ + + +KL CD+++ D K+T
Sbjct: 1239 RVLRYLQGTVELGIKYFRNIEVKLIGHCDSDWGGCIDDMKST 1280
Score = 73.2 bits (178), Expect(3) = e-114
Identities = 35/87 (40%), Positives = 56/87 (64%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K + + FK F+ V+ Q+ + TLRSD G + T + +FC +G+ +LT+ Y PQ
Sbjct: 632 QKSEVFSIFKKFKSFVEKQSGCYIKTLRSDRGMEYTSSQFGNFCEDEGVERQLTVAYTPQ 691
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIK 1740
QNGVV+R+N+T++EM ++ML L K
Sbjct: 692 QNGVVERKNQTVMEMAKAMLYEKGLPK 718
Score = 71.2 bits (173), Expect(3) = e-114
Identities = 36/103 (34%), Positives = 53/103 (51%)
Frame = -3
Query: 2302 ENNLIWHNRLGHVNSKYLKKLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQR 2123
E +WH R GH+N LK L C H+ FP+ + RA++
Sbjct: 549 EEAWLWHRRFGHLNFNSLKML------------------CQRKMHHRQSFPKGVAWRAKK 590
Query: 2122 PLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
LELVH DI GPM + +YF++FIDD+ +M WV+ +++K
Sbjct: 591 VLELVHTDICGPMSTPSQGNNKYFVLFIDDFTRMTWVFFMKQK 633
>gb|ABA95820.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1142
Score = 312 bits (800), Expect(3) = e-110
Identities = 190/589 (32%), Positives = 309/589 (52%), Gaps = 17/589 (2%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TA+Y+LN P K++ + P + + P H+R+F C+ +P + R K D+KS+ +
Sbjct: 442 TAIYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFGCICYAQVPAQKRVKFDNKSDRCI 501
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLE-------- 1382
F+GY KGY ++N ++ K II RDVIF+E T + + T +L
Sbjct: 502 FVGYADGIKGYRLYNLEKKKIIIIRDVIFDESATWNWKSPEASSTPLLPTTTITLGQPHM 561
Query: 1381 ---NKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRW 1220
++ + TP PQPS+ + +DS P++ + + PR
Sbjct: 562 HGTHEVEDHTPSPQPSSPM---------------SSSSASSDSSPSSEEQISTPESAPRR 606
Query: 1219 YRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEM 1040
R ++ + TS ++R N + + E SF+EA + W ++ E M
Sbjct: 607 VRSMVELLESTS-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHM 658
Query: 1039 LVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFA 860
+ + +TWEL+ P +R+ IG KWV K N +G ++K+KARLVAK F QKPGIDY E +A
Sbjct: 659 IEKNNTWELVDRPRDREVIGVKWVYKTKLNLDGSVQKYKARLVAKGFKQKPGIDYYETYA 718
Query: 859 PTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXX 686
P +++TIRT+I LA W+I LD+K AFL+G + +EIY++QPEGF N
Sbjct: 719 PVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEGFSVQGGENKVFRL 778
Query: 685 XXXXXXXXXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTG 506
APR WY +++ + I +G KS ++ L Y+++ +I + ++DD+ TG
Sbjct: 779 KKALYGLKQAPRVWYSQIDKYFIQKGFAKSISEPTL-YVNKTGTDILIVSLYVDDLIYTG 837
Query: 505 QNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKE 326
+ + FKK++ +E++ LG Y+LG+++ + E + + Y +L F+ +
Sbjct: 838 NSEKMMQDFKKDMMHTYEMSDLGLLYYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNC 897
Query: 325 KGRKTPLDPG-VNLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSE 149
K TPL P ++ K + YRS++ SLLYLT TR DI FA LSR+M PS+
Sbjct: 898 KSVTTPLLPNEKQKARDGADKVDPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQ 957
Query: 148 LQLKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
L AA+ +L+Y+K T + G+ ++ + KL + D+++ D K T
Sbjct: 958 LNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKGT 1006
Score = 72.8 bits (177), Expect(3) = e-110
Identities = 37/89 (41%), Positives = 53/89 (59%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K L FK F+ V+NQ+N+K+ LRSD G + KE +C GI +LT Y+ Q
Sbjct: 347 EKSAALEIFKKFKAMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTAGYSTQ 406
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 1734
QNGV +R+N+TI +M SML + K +
Sbjct: 407 QNGVAERKNRTINDMANSMLQDKGMPKSF 435
Score = 65.1 bits (157), Expect(3) = e-110
Identities = 30/76 (39%), Positives = 42/76 (55%)
Frame = -3
Query: 2221 PNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIF 2042
P + + ++ C C K + FP + RA PLELVH DI G + + + YF+ F
Sbjct: 273 PFITLKSDPCEGCVFGKQIRASFPHSGAWRASAPLELVHTDIVGKVPTISEGGNWYFITF 332
Query: 2041 IDDYIKMNWVYLLQRK 1994
IDDY +M WVY L+ K
Sbjct: 333 IDDYTRMIWVYFLKEK 348
>gb|ACN78973.1| copia-type polyprotein [Glycine max] gi|225016157|gb|ACN78980.1|
copia-type polyprotein [Glycine max]
Length = 1042
Score = 296 bits (757), Expect(3) = e-110
Identities = 186/579 (32%), Positives = 299/579 (51%), Gaps = 4/579 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A AVYL N P K++ + P + ++ P DHLR+F S + H+P + R KLD +SE
Sbjct: 350 AVACAVYLSNRSPTKNVKDQTPQEAWSGVKPRVDHLRVFGSIAYAHVPDQGRFKLDDRSE 409
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY ++KGY ++NP K I+SRDV F E+ T E T E E+
Sbjct: 410 KHVFIGYDASSKGYKLYNPNNGKTIVSRDVEFYEEGTWNWEEKEDTYDFFPYFEEIDEEA 469
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQET 1187
+TP N + PT +T N++ ++ ++PR R+I ET
Sbjct: 470 LTP-----------NDSTPALSPTPST-----NEASSSSEGSSSERPRRMRNIQELYDET 513
Query: 1186 SSTQPTRKRTKRMENINNQAYL-IEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELI 1010
E IN+ L ++ + L+F EA + +W +++E + + + +TWEL
Sbjct: 514 -------------EVINDLFCLFVDSKPLNFDEAMKDKRWRQAMEEEIKAIEKNNTWELS 560
Query: 1009 VLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRT 830
LP +AIG KWV K NA+G +E+ KARLVAK + Q+ +DY E FAP +++TIR
Sbjct: 561 SLPKGHEAIGVKWVFKIKKNAKGEVERHKARLVAKGYKQQYEVDYDEVFAPVARMETIRL 620
Query: 829 LIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXXA 656
LI LA W I D+K AFL+G + +++Y++QP GF+ + A
Sbjct: 621 LISLAAQMKWRIFQFDVKSAFLNGYLEEDVYVEQPMGFVIEGQEGKVLKLNKALYGLKQA 680
Query: 655 PRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFK 476
PRAW ++ + G + + L+ + + ++DD+ TG N FK
Sbjct: 681 PRAWNTHIDKYFQDNGFVHCQNEYALYVKTFNNGDVLFICLYVDDLIFTGNNPNLFEDFK 740
Query: 475 KELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPG 296
+ + F++T +G YYLG+++ + + + E Y +++L F TP++ G
Sbjct: 741 ESMSREFDMTDMGLMSYYLGMEVKQTQNGIFVSQERYTKEVLKKFNMLDCNPVNTPMEGG 800
Query: 295 VNLLKNNE-VKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNIL 119
+ L K +E K ++ ++S++ SL YLT TR DI +A+ + RFM+ P+ LKAA+ IL
Sbjct: 801 LKLSKFDEGEKVDSTIFKSLVGSLRYLTNTRPDILYAVGVVCRFMEAPTSPHLKAAKRIL 860
Query: 118 KYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
Y+K TI+ GL + + KL FCD+++ D K+T
Sbjct: 861 CYLKGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKST 899
Score = 85.5 bits (210), Expect(3) = e-110
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Frame = -3
Query: 2305 EENNLIWHNRLGHVNSKYLKKL--EDITKN-PNLIMPNNKCTHCCISKAHKTPFPQQSSR 2135
++ + WH R GH+N LK L E + K P + PN C C + K + FP++++
Sbjct: 153 KDESWCWHMRFGHLNFGALKSLGEEKMVKGMPQINHPNQLCEACLLGKHARRSFPKEANS 212
Query: 2134 RAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRKYQFLI 1979
RA+ PL+LV+ D+ GP+ +YFL+FIDDY + WVY L++K + +
Sbjct: 213 RAKEPLQLVYTDVCGPINPPSCGNNKYFLLFIDDYSRKTWVYFLKQKSEAFV 264
Score = 68.6 bits (166), Expect(3) = e-110
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = -2
Query: 1976 FKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRR 1797
FK F+ V+ ++ + LRSD G + T KE +FC + GI LT+P +PQQNGV +R+
Sbjct: 266 FKNFKALVEKESGYVIKALRSDRGGEFTSKEFNEFCEKYGIRRPLTVPRSPQQNGVAERK 325
Query: 1796 NKTIVEMMRSMLNHAKLIK 1740
N+TI+ M R ML + K
Sbjct: 326 NRTILNMTRCMLKAKNMPK 344
>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1347
Score = 294 bits (753), Expect(3) = e-109
Identities = 188/585 (32%), Positives = 307/585 (52%), Gaps = 10/585 (1%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKC-PLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKS 1550
A T+ YL N P+K+I P++ + P+ HLRIF S C+ HIP + R+KLD K+
Sbjct: 637 AVYTSAYLQNRLPSKAIEDDVTPMEKWCGHKPNVSHLRIFGSICYVHIPDQKRRKLDAKA 696
Query: 1549 EIGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK-DEINSKTLTKILSMLENKE 1373
+ G+ +GY TKGY ++ ++ K +SRDV+F+EDK D+ T ++S+ + +E
Sbjct: 697 KCGILIGYSNQTKGYRVFLLEDEKVEVSRDVVFQEDKKWDWDKQEEVKKTFVMSINDIQE 756
Query: 1372 DIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQ 1193
E + ++ + T + V ND T KK + ++I+ +
Sbjct: 757 SRDQQETSSHDLSQIDDHANNGEGETSSHVLSQVNDQEERETSESPKKYKSMKEILEKA- 815
Query: 1192 ETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWEL 1013
P + + + I + EE ++ EA + +W + +E +++ + TW+L
Sbjct: 816 ------PRMENDEAAQGIE-ACLVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKL 868
Query: 1012 IVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIR 833
+ P ++ I KW+ K +A G K KARLVA+ F+Q+ GIDY E FAP + TIR
Sbjct: 869 VDKPEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIR 928
Query: 832 TLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXX 659
L+ A W + +D+K AFL+GE+ +E+Y+ QP GF+ +
Sbjct: 929 ALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQ 988
Query: 658 APRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPV-ITAFHIDDIFLTGQNTTKIIF 482
APRAWYE+++++ I G +S D+ L+ S++K V I + ++DD+ +TG NT I
Sbjct: 989 APRAWYERIDSYFIQNGFARSMNDAALY--SKKKGEDVLIVSLYVDDLIITGNNTHLINT 1046
Query: 481 FKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLD 302
FKK ++D FE+T LG Y+LG+++ + + L E Y KL+ F ++ K TPL
Sbjct: 1047 FKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLT 1106
Query: 301 P-----GVNLLKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLK 137
P GV +++ A+ YR I+ LLYL +R D+ +A YLSR+M PS +
Sbjct: 1107 PQGKRKGVE--GDDKEFADPTKYRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQ 1164
Query: 136 AARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
A+ +L+YVK T N G+ F +L + D+++ D K+T
Sbjct: 1165 EAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKST 1209
Score = 90.1 bits (222), Expect(3) = e-109
Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Frame = -3
Query: 2341 LEKLRDEVMLCHEENNLIWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISK 2171
L + +E M + + WH RLGHV++K L++++D + P + C C + K
Sbjct: 438 LSSVEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGK 497
Query: 2170 AHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
+ FP++S + + LE+VH D+ GPM+ RY+++F+DDY M WVY L++K
Sbjct: 498 QSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQK 556
Score = 62.4 bits (150), Expect(3) = e-109
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = -2
Query: 1979 TFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKR 1800
TFK F+ V+ Q+N + TLR M FC +GI ++T+PY+PQQNG +R
Sbjct: 562 TFKKFKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQQNGAAER 611
Query: 1799 RNKTIVEMMRSMLNHAKL-IKGW 1734
+N+++VEM RSML L +K W
Sbjct: 612 KNRSLVEMARSMLVEQDLPLKLW 634
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 289 bits (739), Expect(3) = e-108
Identities = 183/587 (31%), Positives = 299/587 (50%), Gaps = 15/587 (2%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TAVY+LN P K++ + P + + P H+R+F C+ +P + R K D+KS +
Sbjct: 659 TAVYILNRSPTKAVPNRTPFEAWYGKKPVIGHMRVFACICYAQVPAQKRVKFDNKSNRCI 718
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLE-------- 1382
F+GY KGY ++N ++ K IISRDV F+E T + + T +L
Sbjct: 719 FVGYADGIKGYRLYNLEKKKIIISRDVFFDESATWNWKSPEASSTPLLPTTTITLGQPHM 778
Query: 1381 ---NKEDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICL---KKKPRW 1220
++ + TP PQPS+ + +DS P++ + + PR
Sbjct: 779 HGTHEVEDHTPSPQPSSPM---------------SSSSASSDSSPSSEEQISTPESAPRR 823
Query: 1219 YRDIINQTQETSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEM 1040
R ++ + TS ++R N + + E SF+EA + W ++ E M
Sbjct: 824 VRSMVELLESTS-----QQRGSEQHEFCNYSVV---EPQSFQEAEKHDNWIKAMEDEIHM 875
Query: 1039 LVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFA 860
+ + +TWE + P +R+ IG KWV K N +G ++K+KARLVAK F QKPGIDY E +A
Sbjct: 876 IEKNNTWEFVDRPRDREVIGVKWVYKTKLNPDGSVQKYKARLVAKGFKQKPGIDYYETYA 935
Query: 859 PTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKDPNXXXXXXX 680
P +++TIRT+I LA W+I LD+K AFL+G + +EIY++QPE F
Sbjct: 936 PVARLETIRTIIALAAQKRWKIYQLDVKSAFLNGYLDEEIYVEQPEWF------------ 983
Query: 679 XXXXXXXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQN 500
++ +G KS ++ L Y+++ +I + ++DD+ TG +
Sbjct: 984 --------------SVQGGENKKGFAKSISEPTL-YVNKTGTDILIVSLYVDDLIYTGNS 1028
Query: 499 TTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKG 320
+ FKK++ +E++ LG Y+LG+++ + E + + Y +L F+ + K
Sbjct: 1029 DKMMQDFKKDMMHTYEMSDLGLLHYFLGMEVHQSDEGIFISQRKYAENILKKFKMDNCKS 1088
Query: 319 RKTPLDPGVNL-LKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQ 143
TPL P ++ KA+ YRS++ SLLYLT TR DI FA LSR+M PS+L
Sbjct: 1089 VTTPLLPNEKQKARDGADKADPTIYRSLVGSLLYLTATRPDIMFAASLLSRYMSSPSQLN 1148
Query: 142 LKAARNILKYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
AA+ +L+Y+K T + G+ ++ + KL + D+++ D K+T
Sbjct: 1149 FTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKST 1195
Score = 80.1 bits (196), Expect(3) = e-108
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = -3
Query: 2290 IWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRP 2120
+WH R+GH+N + LK L + P + + ++ C C K + FP + RA P
Sbjct: 464 LWHKRMGHLNYRALKLLRTKGMVQGLPFITLKSDPCEGCVFGKQIQASFPHSGAWRASAP 523
Query: 2119 LELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
ELVH DI G + M + YF+ FIDDY +M WVY L+ K
Sbjct: 524 FELVHTDIVGKVPTMSEGGNWYFITFIDDYTRMIWVYFLKEK 565
Score = 74.7 bits (182), Expect(3) = e-108
Identities = 38/89 (42%), Positives = 54/89 (60%)
Frame = -2
Query: 2000 KKIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQ 1821
+K L TFK F+ V+NQ+N+K+ LRSD G + KE +C GI +LT Y+ Q
Sbjct: 564 EKSAALETFKKFKVMVENQSNRKIKVLRSDQGGEYISKEFEKYCENAGIRRQLTTGYSAQ 623
Query: 1820 QNGVVKRRNKTIVEMMRSMLNHAKLIKGW 1734
QNGV +R+N+TI +M SML + K +
Sbjct: 624 QNGVAERKNRTINDMANSMLQDKGMPKSF 652
>gb|AAT38758.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1333
Score = 281 bits (720), Expect(3) = e-106
Identities = 168/579 (29%), Positives = 285/579 (49%), Gaps = 4/579 (0%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A T VY LN P K + PL+ +N P HLRIF C + KLD KS
Sbjct: 635 AVATVVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIFG--CIAYALVNFHSKLDEKST 692
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY +K Y ++NP K IISR+V+F ED + NS + + +L E+
Sbjct: 693 KCIFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWN--FNSGNMMSNIQLLPTDEES 750
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKN-DSVPTNTICLKKKPRWYRDIINQTQE 1190
N V + + P+ + + + +P +KKP
Sbjct: 751 AVDFGNSPNSSPVSSSVSSPIAPSTTVAPDESSVEPIPLRRSTREKKPN----------- 799
Query: 1189 TSSTQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELI 1010
+ N + Q L+ + + ++EA +W + +E + + R TWEL+
Sbjct: 800 --------PKYSNTVNTSCQFALLVSDPICYEEAVEQSEWKNAMIEEIQAIERNSTWELV 851
Query: 1009 VLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRT 830
P + IG KWV KYNA+G ++K KARLVAK ++Q+ G+D+ E F+P + +T+R
Sbjct: 852 DAPEGKNVIGLKWVFRTKYNADGSIQKHKARLVAKGYSQQQGVDFDETFSPVARFETVRV 911
Query: 829 LIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXA 656
++ LA + D+K AFL+G++ +E+Y+ QP+GF+ + N A
Sbjct: 912 VLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKVYKLRKALYGLKQA 971
Query: 655 PRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFK 476
PRAWY K+++ G +S + L+ + + ++ ++DD+ G + + + FK
Sbjct: 972 PRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMIYIGSSKSLVNDFK 1031
Query: 475 KELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPG 296
+ FE++ LG +Y+LG+++ + + + + + Y LL FQ + TP++
Sbjct: 1032 SNMMRNFEMSDLGLLKYFLGLEVIQDKDGIFISQKKYAEDLLKKFQMMNCEVATTPMNIN 1091
Query: 295 VNLLK-NNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNIL 119
L + + KAN +RS++ L YLT+TR DI F++ +SRF+Q P++ AA+ +L
Sbjct: 1092 EKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVSVVSRFLQSPTKQHFGAAKRVL 1151
Query: 118 KYVKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
+YV T + G+ + K +L F D++Y D K+T
Sbjct: 1152 RYVAGTTDFGIWYSKAPNFRLVGFTDSDYAGCLDDRKST 1190
Score = 80.5 bits (197), Expect(3) = e-106
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Frame = -3
Query: 2341 LEKLRDEVMLCHEENNL-IWHNRLGHVNSKYLKKLEDITKNPNLIMPNNK----CTHCCI 2177
+ + + ++ E+N +WH R GH+N +LK L + K+ + +PN K C C
Sbjct: 426 ISNVGNSALVVKEKNETNLWHLRYGHLNVNWLKLL--VQKDMVIGLPNIKELDLCEGCIY 483
Query: 2176 SKAHKTPFPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQR 1997
K + FP S RA LELVH D+ GPM+M RYFL+F DDY + +WVY L+
Sbjct: 484 GKQTRKSFPVGKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKF 543
Query: 1996 K 1994
K
Sbjct: 544 K 544
Score = 75.5 bits (184), Expect(3) = e-106
Identities = 36/79 (45%), Positives = 50/79 (63%)
Frame = -2
Query: 1997 KIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQ 1818
K TFK F+ V+NQ+ K+ +LR+D G + + FC + GI ELT PY P+Q
Sbjct: 544 KSETFETFKKFKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYTPEQ 603
Query: 1817 NGVVKRRNKTIVEMMRSML 1761
NGV +R+N+T+VEM RS L
Sbjct: 604 NGVAERKNRTVVEMARSSL 622
>emb|CAN60238.1| hypothetical protein VITISV_032906 [Vitis vinifera]
Length = 1430
Score = 280 bits (716), Expect(3) = e-106
Identities = 178/576 (30%), Positives = 294/576 (51%), Gaps = 4/576 (0%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TAVYLLN P K++ + P + + P HL++F S + R KLD KS +
Sbjct: 744 TAVYLLNISPTKAVLNRTPYEAWYGRKPWVSHLKVFGSVAYTLXBSHNRSKLDEKSVKCI 803
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSK-TLTKILSMLENKEDIIT 1361
F+GY +KGY ++NP K I+SR+V+F+E + ++ L +I S E + +
Sbjct: 804 FIGYCSQSKGYKLYNPVSGKIIVSRNVVFDEKASXTWRVSEDGALVEISSESEMAQ---S 860
Query: 1360 PEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQETSS 1181
+ QPS ++ P P+ + + T +K R RDI TQ
Sbjct: 861 EDQQPS--VQIPXSPTPSHSPSSPNLSXSSSSQSSEET--PPRKFRSLRDIYETTQVLFV 916
Query: 1180 TQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVLP 1001
PT +F+EA +W + +++E + + +TWEL+ LP
Sbjct: 917 ADPT----------------------TFEEAVEKEEWCSAMKEEIAAIEKNETWELVELP 954
Query: 1000 PERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLII 821
++ IG KWV KY A+G ++K KARLVAK + Q+ G+DY + F+P + +T+RTL+
Sbjct: 955 EDKNVIGVKWVFRTKYLADGSIQKHKARLVAKGYAQQHGVDYDDTFSPVARFETVRTLLA 1014
Query: 820 LAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFI--KDPNXXXXXXXXXXXXXXAPRA 647
LA H W + D+K AFL+GE+ +E+Y QPEGFI APRA
Sbjct: 1015 LAAHMHWCVYQFDVKSAFLNGELVEEVYXSQPEGFIVPDKEEHVYRLKXALYGLKQAPRA 1074
Query: 646 WYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKEL 467
WY K++++ + G KS ++ NL+ + KN +I ++DD+ G +++ I FK +
Sbjct: 1075 WYSKIDSYFVENGFEKSKSEPNLYLKRQGKNDLLIICLYVDDMIYMGSSSSLINEFKACM 1134
Query: 466 EDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVNL 287
+ FE++ LG ++LG+++ + + + + Y LL F K P++ L
Sbjct: 1135 KKKFEMSDLGLLHFFLGLEVKQVEDGVFVSQRKYAVDLLKKFNMLNCKVVAIPMNSNEKL 1194
Query: 286 -LKNNEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKYV 110
++ +A+A +RS++ L+YLT+TR DI FA+ +SRFM PS+ L A + +L+Y+
Sbjct: 1195 QAEDGTERADARRFRSLVGGLIYLTHTRPDIAFAVGVISRFMHCPSKQHLGATKRLLRYI 1254
Query: 109 KETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
T + + + KL + D+++ D K+T
Sbjct: 1255 AGTYDFRIWXGHVQEFKLVGYTDSDWAGCLEDRKST 1290
Score = 86.7 bits (213), Expect(3) = e-106
Identities = 49/106 (46%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = -3
Query: 2302 ENNLIWHNRLGHVNSKYLK---KLEDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRR 2132
E+NL WH R GH+N K LK K E + + P I N C C K K PFP+ SRR
Sbjct: 547 ESNL-WHLRYGHLNVKGLKLLSKKEMVFELPK-IDSVNVCEGCIYGKQSKKPFPKGRSRR 604
Query: 2131 AQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
A LE++H D+ GPM+ RYFL+F DD+ +M+WVY LQ K
Sbjct: 605 ASSCLEIIHADLCGPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSK 650
Score = 70.1 bits (170), Expect(3) = e-106
Identities = 32/79 (40%), Positives = 50/79 (63%)
Frame = -2
Query: 1997 KIPILNTFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQ 1818
K TFK F+ V+ Q+ + + LR+D + + FC ++G+ ELT PY+P+Q
Sbjct: 650 KAETFETFKKFKAFVEKQSGKCIKVLRTDRXGEFLSNDFKVFCEEEGLHRELTTPYSPEQ 709
Query: 1817 NGVVKRRNKTIVEMMRSML 1761
NGV +R+N+T+VEM RSM+
Sbjct: 710 NGVAERKNRTVVEMARSMM 728
>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
Length = 1339
Score = 287 bits (734), Expect(3) = e-104
Identities = 183/590 (31%), Positives = 307/590 (52%), Gaps = 13/590 (2%)
Frame = -3
Query: 1732 SYACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHK 1553
S A +V++ N P ++ P + ++ P ++ R+F + HIP + R KLD K
Sbjct: 625 SEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDK 684
Query: 1552 SEIGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLK-DEINSKTLTKILSMLENK 1376
S+ +FLG +K + +++P K +IS+DV+F+EDK+ D+ + +E K
Sbjct: 685 SKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQAD----------VEAK 734
Query: 1375 EDIITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQT 1196
E + + K V +P P N VG N V ++ I P T
Sbjct: 735 EVTLECGDEDDEKNSEVVEPIAVASP--NHVGSDNN--VSSSPILAPSSPAPSPVAAKVT 790
Query: 1195 QETS-----STQPTRKRTKRMENINNQAYLI--EEEILSFKEAFNNPKWNTTIQKEYEML 1037
+E + T + + EN++ ++ E + + F +A + W ++ E E +
Sbjct: 791 RERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIESI 850
Query: 1036 VRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAP 857
V+ +TWEL LP IG KWV K N +G ++K+KARLVAK + Q GIDY+E FAP
Sbjct: 851 VKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAP 910
Query: 856 TMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIK--DPNXXXXXX 683
++ T+RT++ ++ WEI LD+K AFLHGE+ +E+Y++QPEGFI+ +
Sbjct: 911 VARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLR 970
Query: 682 XXXXXXXXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQ 503
APRAWY ++E + + + + ++ LF + N +I + ++DD+ TG
Sbjct: 971 KALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGN-ILIVSLYVDDLIFTGS 1029
Query: 502 NTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEK 323
+ FKK + FE++ LG +++LGI++ + + + Y R++L F ++
Sbjct: 1030 DKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESN 1089
Query: 322 GRKTPLDPGVNLLKN-NEVKANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSEL 146
K P+ PG L K+ N K + ++ ++ SL+YLT TR D+ + +C +SRFM P
Sbjct: 1090 AVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMS 1149
Query: 145 QLKAARNILKYVKETINLGLPF--EKISPLKLQAFCDTNYTDRGSDGKAT 2
AA+ IL+Y+K T+ LG+ + K LKL AF D++Y +D ++T
Sbjct: 1150 HWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRST 1199
Score = 73.2 bits (178), Expect(3) = e-104
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Frame = -3
Query: 2326 DEVMLCHEENNLIWHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTP 2156
+EVM ++ N +WH R GH+N + LK L + P L C C K H+
Sbjct: 426 EEVM---DKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKEICAICLTGKQHRES 482
Query: 2155 FPQQSSRRAQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
+++S ++ L+LVH DI GP+ + +RY L FIDD+ + WVY L K
Sbjct: 483 MSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEK 536
Score = 69.7 bits (169), Expect(3) = e-104
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = -2
Query: 1979 TFKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKR 1800
TFK+F+ V+ + L+ LR+D G + T E +FC GI +LT + PQQNGV +R
Sbjct: 542 TFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAER 601
Query: 1799 RNKTIVEMMRSMLNHAKLIK 1740
+N+TI+ +RSML+ ++ K
Sbjct: 602 KNRTIMNAVRSMLSERQVPK 621
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 290 bits (741), Expect(3) = e-104
Identities = 179/577 (31%), Positives = 293/577 (50%), Gaps = 5/577 (0%)
Frame = -3
Query: 1717 TAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGM 1538
TAVYLLN P K++ + P + + P HLR+F S C+ I RKKLD KSE +
Sbjct: 474 TAVYLLNISPTKAVLNRTPYEAWCGRKPGVSHLRVFGSVCYSLIDAHNRKKLDEKSEKCI 533
Query: 1537 FLGYPPNTKGYIIWNPKECKEIISRDVIFEEDK--TLKDEINSKTLTKILSMLENKEDII 1364
FLGY +KGY ++NP K + SR+V F+E+ T ++ N + L +I E +E+
Sbjct: 534 FLGYCSQSKGYRLYNPVSGKIVESRNVTFDEEAVWTWREGDNGE-LVEIFVNDEQEEN-- 590
Query: 1363 TPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVPTNTICLKKKPRWYRDIINQTQETS 1184
P P+N P N G +D +++I +K R R+I +
Sbjct: 591 ---PSPANSATNTPASSAPSSPGPNN-GNGSSDGEGSSSISPPQKFRSLREIYEEQHAFF 646
Query: 1183 STQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVL 1004
S P ++ EA +W +++E + + TW+L+ L
Sbjct: 647 SADP----------------------VTVNEAATKEEWRKAMEEEIASIEKNQTWQLVEL 684
Query: 1003 PPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLI 824
P E+ +IG KWV KY A+ ++K+KARLV K + Q+ G+DY + F+P + T+RTL+
Sbjct: 685 PEEKHSIGVKWVFKTKYQADDNIQKYKARLVVKGYAQEYGVDYEKTFSPVARFDTLRTLL 744
Query: 823 ILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKD--PNXXXXXXXXXXXXXXAPR 650
L + W I D+K AFL+GE+ +E+Y+ QPEGFI + APR
Sbjct: 745 ALGAYMHWPIYQFDVKSAFLNGELREEVYVDQPEGFIVEGREGFVYRLYKALYGLKQAPR 804
Query: 649 AWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKE 470
AWY K++++ G +S ++ L+ + ++ ++DD+ G + + + FK
Sbjct: 805 AWYNKIDSYFAETGFERSKSEPTLYIKKQGAGDILVVCLYVDDMIYMGSSASLVSEFKAS 864
Query: 469 LEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVN 290
+ + FE+T LG ++LG+++ + + + + Y LL F +TP++
Sbjct: 865 MMEKFEMTDLGLLYFFLGLEVKQVEDGVFVSQHKYACDLLKRFDMAGCNAVETPMNVNEK 924
Query: 289 LLKNNEV-KANAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKY 113
LL + KA+A +RS++ L+YLT+TR DI FA+ +SRFM P++ AA+ +L+Y
Sbjct: 925 LLAGDGTEKADATKFRSLVGGLIYLTHTRPDICFAVSAISRFMHGPTKQHFGAAKRLLRY 984
Query: 112 VKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
+ T GL + +S KL F D+++ D K+T
Sbjct: 985 IARTAEYGLWYCSVSKFKLVGFTDSDWAGCVQDRKST 1021
Score = 72.8 bits (177), Expect(3) = e-104
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = -2
Query: 1976 FKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRR 1797
FK F+ V+ Q+ Q++ LR+D G + T + FC ++GI ELT Y P+QNGV +R+
Sbjct: 387 FKNFKALVEKQSEQQVKVLRTDRGGEFTSTKFNQFCEKEGIHHELTTAYTPEQNGVAERK 446
Query: 1796 NKTIVEMMRSMLNHAKL 1746
N T+VEM RSML L
Sbjct: 447 NTTVVEMARSMLKERNL 463
Score = 66.2 bits (160), Expect(3) = e-104
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -3
Query: 2284 HNRLGHVNSKYLKKL--EDITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPLEL 2111
H R GH++ L+ L +D+ I C C K + FP +RRA + LE+
Sbjct: 282 HLRYGHLHENGLRVLNQKDMVIGLPKIGALKLCEGCVYGKQSRRSFPVGRARRATQYLEI 341
Query: 2110 VHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
VH D+ GPM+ +YFL+ DDY +M+WVY L+ K
Sbjct: 342 VHADLCGPMQTASLGGSKYFLMLTDDYSRMSWVYFLKSK 380
>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana]
Length = 1334
Score = 292 bits (747), Expect(3) = e-103
Identities = 176/577 (30%), Positives = 307/577 (53%), Gaps = 6/577 (1%)
Frame = -3
Query: 1714 AVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGMF 1535
AVY+LN P+K++ P + ++ PS +HLRIF S + +P + R KLD KS +
Sbjct: 632 AVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVM 691
Query: 1534 LGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDIITPE 1355
G +K Y +++P K +ISRDV F+E++ + E K+L + L + +N + E
Sbjct: 692 FGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWE--DKSLEEEL-VWDNSDHEPAGE 748
Query: 1354 PQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVP---TNTICLKKKPRWYRDIINQTQETS 1184
P Q +E+ TV E + ++P T + +++P W +D +
Sbjct: 749 EGPEINHNG-QQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVL 807
Query: 1183 STQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVL 1004
TQ + ++ ++ + F+EA W ++ E + +TWEL+ L
Sbjct: 808 ITQDEEDEVLAL-------FIGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVEL 860
Query: 1003 PPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLI 824
P E K IG KW+ K+N +G ++K+KARLVAK ++Q+ G+D+ E FAP K TIR ++
Sbjct: 861 PEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLIL 920
Query: 823 ILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGF--IKDPNXXXXXXXXXXXXXXAPR 650
LA GW + LD+K AFLHG++ ++++++QP+GF ++ + APR
Sbjct: 921 GLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPR 980
Query: 649 AWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKE 470
AWY ++E +G K + LF + +E++ ++ + ++DD+ TG + I FK
Sbjct: 981 AWYSRIEEFFGKEGFEKCYCEHTLF-VKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNS 1039
Query: 469 LEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVN 290
+ + F +T LG +Y+LG+++ + + ++ Y +++ + E K P+ PG
Sbjct: 1040 MMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQK 1099
Query: 289 LLKNNEVKA-NAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKY 113
L K A + ++ +I SL YLT TR D+ F++ +SR+M+ P+E L A + IL+Y
Sbjct: 1100 LTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILRY 1159
Query: 112 VKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
V+ T++LG+ +E+ +L F D++Y D K+T
Sbjct: 1160 VQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKST 1196
Score = 67.8 bits (164), Expect(3) = e-103
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = -2
Query: 1976 FKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRR 1797
FK F+ +V+ ++ +KL LRSD G + +E ++C + GI +LT Y PQQNGV +R+
Sbjct: 544 FKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERK 603
Query: 1796 NKTIVEMMRSMLNHAKL-IKGWELCMSYSCILI 1701
N++++ M R ML + K W + Y+ ++
Sbjct: 604 NRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYIL 636
Score = 65.5 bits (158), Expect(3) = e-103
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = -3
Query: 2296 NLIWHNRLGHVNSKYLKKL---EDITKNPNLIMPNNK--CTHCCISKAHKTPFPQQSSRR 2132
N +WH R GH+N + L+ L E + P + + C C K + P++S+ +
Sbjct: 432 NNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWK 491
Query: 2131 AQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
+ + L+LVH DI GP+ +RY L FIDD+ + W YLL K
Sbjct: 492 STQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEK 537
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 290 bits (743), Expect(3) = e-102
Identities = 176/577 (30%), Positives = 306/577 (53%), Gaps = 6/577 (1%)
Frame = -3
Query: 1714 AVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSEIGMF 1535
AVY+LN P+K++ P + ++ PS +HLRIF S + +P + R KLD KS +
Sbjct: 632 AVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVM 691
Query: 1534 LGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDIITPE 1355
G +K Y +++P K +ISRDV F+E++ + E K+L + L + +N + E
Sbjct: 692 FGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWE--DKSLEEEL-VWDNSDHEPAGE 748
Query: 1354 PQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSVP---TNTICLKKKPRWYRDIINQTQETS 1184
P Q +E+ TV E + ++P T + +++P W +D +
Sbjct: 749 EGPEINHNG-QQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVL 807
Query: 1183 STQPTRKRTKRMENINNQAYLIEEEILSFKEAFNNPKWNTTIQKEYEMLVRKDTWELIVL 1004
TQ + ++ + + F+EA W ++ E + +TWEL+ L
Sbjct: 808 ITQDEEDEVLAL-------FIGPGDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVEL 860
Query: 1003 PPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPGIDYSEKFAPTMKIKTIRTLI 824
P E K IG KW+ K+N +G ++K+KARLVAK ++Q+ G+D+ E FAP K TIR ++
Sbjct: 861 PEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLIL 920
Query: 823 ILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGF--IKDPNXXXXXXXXXXXXXXAPR 650
LA GW + LD+K AFLHG++ ++++++QP+GF ++ + APR
Sbjct: 921 GLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPR 980
Query: 649 AWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFHIDDIFLTGQNTTKIIFFKKE 470
AWY ++E +G K + LF + +E++ ++ + ++DD+ TG + I FK
Sbjct: 981 AWYSRIEEFFGKEGFEKCYCEHTLF-VKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNS 1039
Query: 469 LEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLLVSFQEEKEKGRKTPLDPGVN 290
+ + F +T LG +Y+LG+++ + + ++ Y +++ + E K P+ PG
Sbjct: 1040 MMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQK 1099
Query: 289 LLKNNEVKA-NAVTYRSIIRSLLYLTYTRSDIHFAICYLSRFMQEPSELQLKAARNILKY 113
L K A + ++ +I SL YLT TR D+ F++ +SR+M+ P+E L A + IL+Y
Sbjct: 1100 LTKAGAGDAVDPTEFKQLIGSLRYLTTTRPDLIFSVNLVSRYMESPNEQHLLAVKRILRY 1159
Query: 112 VKETINLGLPFEKISPLKLQAFCDTNYTDRGSDGKAT 2
V+ T++LG+ +E+ +L F D++Y D K+T
Sbjct: 1160 VQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKST 1196
Score = 67.8 bits (164), Expect(3) = e-102
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = -2
Query: 1976 FKMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRR 1797
FK F+ +V+ ++ +KL LRSD G + +E ++C + GI +LT Y PQQNGV +R+
Sbjct: 544 FKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERK 603
Query: 1796 NKTIVEMMRSMLNHAKL-IKGWELCMSYSCILI 1701
N++++ M R ML + K W + Y+ ++
Sbjct: 604 NRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYIL 636
Score = 65.5 bits (158), Expect(3) = e-102
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = -3
Query: 2296 NLIWHNRLGHVNSKYLKKL---EDITKNPNLIMPNNK--CTHCCISKAHKTPFPQQSSRR 2132
N +WH R GH+N + L+ L E + P + + C C K + P++S+ +
Sbjct: 432 NNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWK 491
Query: 2131 AQRPLELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRK 1994
+ + L+LVH DI GP+ +RY L FIDD+ + W YLL K
Sbjct: 492 STQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEK 537
>emb|CAD41731.1| OSJNBb0034I13.10 [Oryza sativa Japonica Group]
Length = 1425
Score = 272 bits (695), Expect(3) = e-101
Identities = 187/599 (31%), Positives = 293/599 (48%), Gaps = 24/599 (4%)
Frame = -3
Query: 1726 ACLTAVYLLNYWPNKSIGFKCPLQLFNKTIPSFDHLRIFDSKCFYHIPKELRKKLDHKSE 1547
A + AVY+LN P K++ P + ++ PS +HLR+F + K +KLD +
Sbjct: 708 AVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGT 767
Query: 1546 IGMFLGYPPNTKGYIIWNPKECKEIISRDVIFEEDKTLKDEINSKTLTKILSMLENKEDI 1367
+F+GY +K Y +++P + +SRDV+F+E T + ED
Sbjct: 768 RMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDETATWA--------------WRDPEDA 813
Query: 1366 ITPEPQPSNKRRVVNQPEEKVVPTWNTVGEVKNDSV-----PTNTICLKKKPRWYRD--I 1208
T E + + V+ V P+ GE V P +T L PR
Sbjct: 814 ATEEEEFT-----VDFFVSPVAPSVADAGEQTGTPVQAGVSPVSTGVLSSPPRAPNGEFC 868
Query: 1207 INQTQETSSTQPTRKRTKRMENI------------NNQAYLIEEEILSFKEAFNNPKWNT 1064
T T T R +R+++I ++Q + EE SF EA + W
Sbjct: 869 TPPTSVTPETDGGPVRYRRVQDILSTTEPVLDFDYSDQCLIATEEPTSFVEAEKHECWRR 928
Query: 1063 TIQKEYEMLVRKDTWELIVLPPERKAIGCKWVLSKKYNAEGILEKWKARLVAKDFNQKPG 884
+ +E + TW L LP KAIG KWV K + G + K KARLVAK + Q+ G
Sbjct: 929 AMVEELRSVEENQTWSLAELPAGHKAIGLKWVYKLKKDPSGAIVKHKARLVAKGYVQQQG 988
Query: 883 IDYSEKFAPTMKIKTIRTLIILAVHHGWEI*HLDIKRAFLHGEITKEIYMKQPEGFIKDP 704
+D+ E FAP +++T+R L+ LA GWEI H+D+K AFL+GE+ +E+Y+ QP GF
Sbjct: 989 VDFDEVFAPVARMETVRLLVALAAQKGWEIHHMDVKSAFLNGELEEEVYVVQPPGFDDKT 1048
Query: 703 N--XXXXXXXXXXXXXXAPRAWYEKLENHLITQGLIKSGTDSNLFYLSEEKNRPVITAFH 530
N APRAW KL+N L++ KS T+S + Y+ + +I +
Sbjct: 1049 NASKVLKLRKALYGLRQAPRAWNAKLDNTLLSLKFNKSATESAV-YVRGVGDSKLIVGVY 1107
Query: 529 IDDIFLTGQNTTKIIFFKKELEDIFEVTGLGNARYYLGIQICR*GESLILH*EAYIRKLL 350
+DD+ +TG +I FK +++ F ++ LG YYLG+++ + GE + L AY K+L
Sbjct: 1108 VDDLIITGSQKKEIDAFKLQMKQRFNMSDLGFLSYYLGMEVVQKGEGIFLSQSAYAGKIL 1167
Query: 349 VSFQEEKEKGRKTPLDPGVNLLKNNEVK-ANAVTYRSIIRSLLYLTYTRSDIHFAICYLS 173
E + P++ + L K + + YRSI+ SL YL TR D+ +++ Y+S
Sbjct: 1168 EKTGMEGCNPTQVPMEARLKLSKEGTGECVDPTEYRSIVGSLRYLVNTRPDLAYSVGYVS 1227
Query: 172 RFMQEPSELQLKAARNILKYVKETINLGLPF--EKISPLKLQAFCDTNYTDRGSDGKAT 2
RFM++P+ A ++IL+Y+ TI G + E++ KL F D++ D K+T
Sbjct: 1228 RFMEKPTSEHWAAVKHILRYISGTIKTGCWYGREEVGNAKLVGFSDSDMAGDLDDRKST 1286
Score = 73.9 bits (180), Expect(3) = e-101
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Frame = -3
Query: 2287 WHNRLGHVNSKYLKKLED---ITKNPNLIMPNNKCTHCCISKAHKTPFPQQSSRRAQRPL 2117
WH R GH+N + L++L + P + + C C K + PFP+++ RAQ L
Sbjct: 517 WHARFGHLNFQSLRRLAQGNMVRGLPTIDHTDQLCDGCLAGKQRRLPFPEEAKFRAQEAL 576
Query: 2116 ELVHCDIYGPMEMMIKKKQRYFLIFIDDYIKMNWVYLLQRKYQ 1988
ELVH D+ GP+ ++YFL+ +DD + W+ LL K++
Sbjct: 577 ELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHE 619
Score = 73.6 bits (179), Expect(3) = e-101
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = -2
Query: 1973 KMFRKQVQNQTNQKLSTLRSDNGAKLTLKEMVDFCIQKGII*ELTMPYNPQQNGVVKRRN 1794
K F+ V+ ++ +KL LR+D G + T E +D+C +G+ ELT PY+PQQN VV+RRN
Sbjct: 625 KQFQAGVELESGRKLRALRTDRGGEFTSVEFMDYCTDRGMRRELTAPYSPQQNRVVERRN 684
Query: 1793 KTIVEMMRSMLNHAKL 1746
+T+V RSML A L
Sbjct: 685 QTVVAAARSMLKAAGL 700