BLASTX nr result

ID: Ephedra27_contig00011956 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00011956
         (1873 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001757939.1| predicted protein [Physcomitrella patens] gi...   477   e-132
ref|XP_002988629.1| hypothetical protein SELMODRAFT_447395 [Sela...   473   e-130
ref|XP_002979319.1| hypothetical protein SELMODRAFT_418944 [Sela...   471   e-130
ref|XP_006837050.1| hypothetical protein AMTR_s00110p00061160 [A...   366   2e-98
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   355   3e-95
ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III s...   355   3e-95
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              320   1e-84
gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus pe...   316   2e-83
gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theo...   315   3e-83
ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   315   3e-83
ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citr...   309   2e-81
ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Popu...   305   6e-80
gb|EOX91150.1| Transcription regulators,zinc ion binding, putati...   299   2e-78
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       298   4e-78
gb|EOX91149.1| Transcription regulators,zinc ion binding, putati...   293   1e-76
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   289   3e-75
ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III s...   286   2e-74
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...   286   2e-74
ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III s...   281   5e-73
gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Mor...   281   7e-73

>ref|XP_001757939.1| predicted protein [Physcomitrella patens] gi|162690816|gb|EDQ77181.1|
            predicted protein [Physcomitrella patens]
          Length = 832

 Score =  477 bits (1228), Expect = e-132
 Identities = 275/647 (42%), Positives = 394/647 (60%), Gaps = 43/647 (6%)
 Frame = -3

Query: 1829 DRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAMD 1650
            DRV+REIDV   P +DP+T +Y++QYPLRP+WR Y LEERC EVR+KP+Q +FEVDL +D
Sbjct: 184  DRVVREIDVFLTPRVDPETNLYVLQYPLRPYWRPYNLEERCLEVRIKPQQTKFEVDLDID 243

Query: 1649 ENGENYDDNADEYLKISKQTLTSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMTHI 1470
               ENYD + +++L+I KQTL S+K  +  +YAIGILRGN+L+L PVQ  VQ RP M +I
Sbjct: 244  TTSENYDQDREQHLQIEKQTLASSKVAMTTSYAIGILRGNRLHLNPVQAVVQFRPSMKYI 303

Query: 1469 AQGLDDIKRSRKAVNMGDDAEKE----KPVEAKPALVSV-----KPETERQEQLRLRSYQ 1317
             +     K+S K   + D  E+E    +P E+K  L  +     + ETERQE  RL+S+ 
Sbjct: 304  DEYDAAKKKSNKEAGIADGDEEELFDAEPPESKTELTLLQVNVRRRETERQEATRLQSHA 363

Query: 1316 HFKKLEEEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTT 1137
            + K+L+E E WI LEP+G D+ +T  + +K+VT     I FN++   Y++ LVPGR ST+
Sbjct: 364  YLKQLDEAEAWIPLEPHGTDSPITEGIRQKMVTSTQDRINFNLSPDAYLNTLVPGRASTS 423

Query: 1136 SNHQLHGDHTGNAGLSRSYLDSLKLQD-RIKAIFSQKRIQVFRFESLMRFA-SGHSTEEV 963
            +   L  D +GN G+SRS+L++L L + R + +    R+QV +FE LM+ A +G S EE+
Sbjct: 424  TAGSLIEDGSGNVGISRSHLETLVLPEVRFEYLLRVSRVQVLQFERLMKMAPAGCSDEEL 483

Query: 962  LNVVKTYAFLVQGCWVPASIF--HYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKER 789
            LNV+  +A LVQGCWV AS     YRG L  +RDY+L LFSKN+ + +EQL  L L K  
Sbjct: 484  LNVLSNFAVLVQGCWVAASHIRPEYRGGLRAMRDYILFLFSKNRVVKHEQLRGLPLTKGA 543

Query: 788  VREVLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQA 609
            +RE++  IA Q+   G W F+E+TDK+FI+ +Q + KEQ  QW+ +E  I  A   +  +
Sbjct: 544  LREIMVPIAVQRAGVG-WEFQEDTDKSFIKKHQSVVKEQTAQWVNSEPGIVGALVEMNPS 602

Query: 608  ---LHGIQAS---------NISSGES-------------LDQLKRSAVNGTGELNKKANM 504
               +HG + S         N  SG+                +++ +     GE     + 
Sbjct: 603  FPEVHGFEPSETFEGNKKLNTKSGKQGNSSLVSHSPKPPSGKIQGNKAGPLGEAGPSGDG 662

Query: 503  KEKLQLDG---STMSQESRTSLALALREILSS-HVCNLKEIRQSLQNLAKVKGTA-GNKK 339
             +K  ++     TMS E+R +L  AL+EI +  HVC ++ I QSL+++A  +  A  N K
Sbjct: 663  HDKSNVENGAQGTMSDETRMALPGALKEIFAKHHVCTMQIIVQSLRDMAIERTVANSNPK 722

Query: 338  EAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKSLGNPTIDAYRNVVVKLIRAKGP 159
             A   +AAAK A AP  ELT+ + +VA+NI GVYFL +L NP +D +R VV+ L+R  GP
Sbjct: 723  SAAAAVAAAKAANAPASELTAAVCRVATNIGGVYFLTTLNNPALDPFREVVIALLRKMGP 782

Query: 158  GAIIRKVEVFEACKLEVGDPSPQIYSKIMKELCTSKGGGWVLKTGDG 18
             A +RK ++  A K    +     Y K+MKELC ++G  W LK GDG
Sbjct: 783  DAGLRKNDILLAFKSAGREAPSATYLKVMKELCYTRGAAWYLKPGDG 829


>ref|XP_002988629.1| hypothetical protein SELMODRAFT_447395 [Selaginella moellendorffii]
            gi|300143736|gb|EFJ10425.1| hypothetical protein
            SELMODRAFT_447395 [Selaginella moellendorffii]
          Length = 625

 Score =  473 bits (1216), Expect = e-130
 Identities = 273/618 (44%), Positives = 386/618 (62%), Gaps = 14/618 (2%)
 Frame = -3

Query: 1829 DRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAMD 1650
            D V+REI+V   P  DPDTK Y++QYPLRP+WR Y LE+RC+ VRVK +  + EVDL +D
Sbjct: 25   DTVVREIEVHITPTADPDTKFYLLQYPLRPYWRPYELEQRCEAVRVKHQHQKLEVDLQVD 84

Query: 1649 ENGENYDDNADEYLKISKQTLTSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMTHI 1470
              G+NYDD AD++L+I+KQTLTST+  L+  YAIGIL+GNKL+L P+   VQLRP ++++
Sbjct: 85   RFGDNYDDAADDHLRIAKQTLTSTQGNLSTNYAIGILQGNKLHLNPLHAIVQLRPSLSYL 144

Query: 1469 AQGLDDIKRSRKAVNMGD---DAEKEKPVEAKPALVSV-----KPETERQEQLRLRSYQH 1314
             +  +  K++   V   D   DAE+    E KP  V+      K ETERQ+Q RL SY H
Sbjct: 145  NEADEQKKKNITRVESDDEMPDAEEGAATEKKPEPVAFKVEIKKQETERQQQSRLMSYAH 204

Query: 1313 FKKLEEEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRT-STT 1137
             K+LEE E WI LEP+G D+ VT E+  K+ +  +  I F+M+ + Y+  LVPGR  S  
Sbjct: 205  LKQLEEAEAWITLEPHGLDSPVTKEIKMKMKSSANNLIRFDMSRNEYMKKLVPGRAPSAA 264

Query: 1136 SNHQLHGDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFA-SGHSTEEVL 960
            ++  + G   G   LS+SYLD+L L  R+ A+ SQ R+ V +FE LM+ A +G + EEVL
Sbjct: 265  ASQAVPG--LGKEPLSKSYLDTLPLDKRLHAVLSQGRVHVLQFERLMKLAPAGCTEEEVL 322

Query: 959  NVVKTYAFLVQGCWVPASIFHYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVRE 780
            +V++  A+LVQGCWV  S   Y G  C +RDY+LL F KN+ +  E LE+L + KE +RE
Sbjct: 323  DVLQKTAYLVQGCWVATSNMRYTGGRCAIRDYILLQFVKNRVVSRETLEQLRVSKEILRE 382

Query: 779  VLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHG 600
            +L  +A Q  + G W F E TDKTFI+ +  I K+Q ++W   E  I   A +++Q    
Sbjct: 383  ILVPLAVQNIKTGGWEFIESTDKTFIKRHNSIAKDQLQRWTAGEKLISDRALAVQQ---- 438

Query: 599  IQASNISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREI-L 423
                 + SG+++     S +  +  +  + +         S+M+ E+  +L  AL +I L
Sbjct: 439  -----MGSGKAMGAKPGSGLAASTGIPPRPS-------TSSSMAPETLAALPDALTQIFL 486

Query: 422  SSHVCNLKEIRQSLQNLAKVKGTAGNKK--EAVKGMAAAKGATAPLGELTSVIDQVASNI 249
              HVC L+ I   L+  A  K  A N K  E    +AAAKGA+AP+ ELT+++D +A+NI
Sbjct: 487  KHHVCTLQFICHCLRESAITKSQADNVKVEEKASAVAAAKGASAPVAELTAIVDTIATNI 546

Query: 248  NGVYFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVGD-PSPQIYSKIM 72
            NGVYFL  LG+PT D +R VV+ L++ K  G  +++ E+ EA KL +   PS Q+Y KIM
Sbjct: 547  NGVYFLTQLGDPTQDPFREVVIALLKQKSAG--LQRSEIMEAFKLALRKMPSNQLYQKIM 604

Query: 71   KELCTSKGGGWVLKTGDG 18
            KELC ++G  WVLKTGDG
Sbjct: 605  KELCYTRGATWVLKTGDG 622


>ref|XP_002979319.1| hypothetical protein SELMODRAFT_418944 [Selaginella moellendorffii]
            gi|300153087|gb|EFJ19727.1| hypothetical protein
            SELMODRAFT_418944 [Selaginella moellendorffii]
          Length = 625

 Score =  471 bits (1213), Expect = e-130
 Identities = 272/618 (44%), Positives = 386/618 (62%), Gaps = 14/618 (2%)
 Frame = -3

Query: 1829 DRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAMD 1650
            D V+REI+V   P  DPDTK Y++QYPLRP+WR Y LE+RC+ VRVK +  + EVDL +D
Sbjct: 25   DTVVREIEVHITPTADPDTKFYLLQYPLRPYWRPYELEQRCEAVRVKHQHQKLEVDLQVD 84

Query: 1649 ENGENYDDNADEYLKISKQTLTSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMTHI 1470
              G+NYDD AD++L+I+KQTLTST+  L+  YAIGIL+GNKL+L P+   VQLRP ++++
Sbjct: 85   RFGDNYDDAADDHLRIAKQTLTSTQGNLSTNYAIGILQGNKLHLNPLHAIVQLRPSLSYL 144

Query: 1469 AQGLDDIKRSRKAVNMGD---DAEKEKPVEAKPALVSV-----KPETERQEQLRLRSYQH 1314
             +  +  K++   V   D   DAE+    E KP  V+      K ETERQ+Q RL SY H
Sbjct: 145  NEADEQKKKNITRVESDDEMPDAEEGAATEKKPEPVAFKVEIKKQETERQQQSRLMSYAH 204

Query: 1313 FKKLEEEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRT-STT 1137
             K+LEE E WI LEP+G D+ VT E+  K+ +  +  I F+M+ + Y+  LVPGR  S  
Sbjct: 205  LKQLEEAEAWITLEPHGLDSPVTKEIKMKMKSSANNLIRFDMSRNEYMKKLVPGRAPSAA 264

Query: 1136 SNHQLHGDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFA-SGHSTEEVL 960
            ++  + G   G   LS+SYLD+L L  R+ A+ SQ R+ V +FE LM+ A +G + EEVL
Sbjct: 265  ASQAVPG--LGKEPLSKSYLDTLPLDKRLHAVLSQGRVHVLQFERLMKLAPAGCTEEEVL 322

Query: 959  NVVKTYAFLVQGCWVPASIFHYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVRE 780
            +V++  A+LVQGCWV  S   Y G  C +RDY+LL F KN+ +  E LE+L + KE +RE
Sbjct: 323  DVLQKTAYLVQGCWVATSNMRYTGGRCAIRDYILLQFVKNRVVSRETLEQLRVSKEILRE 382

Query: 779  VLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHG 600
            +L  +A Q  + G W F E TDKTFI+ +  I K+Q ++W   +  I   A +++Q    
Sbjct: 383  ILVPLAVQNIKTGGWEFIESTDKTFIKRHNSIAKDQLQRWTAGDKLISDRALAVQQ---- 438

Query: 599  IQASNISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREI-L 423
                 + SG+++     S +  +  +  + +         S+M+ E+  +L  AL +I L
Sbjct: 439  -----MGSGKAMGAKPGSGLAASTGIPPRPS-------TSSSMAPETLAALPDALTQIFL 486

Query: 422  SSHVCNLKEIRQSLQNLAKVKGTAGNKK--EAVKGMAAAKGATAPLGELTSVIDQVASNI 249
              HVC L+ I   L+  A  K  A N K  E    +AAAKGA+AP+ ELT+++D +A+NI
Sbjct: 487  KHHVCTLQFICHCLRESAITKSQADNVKVEEKASAVAAAKGASAPVAELTAIVDTIATNI 546

Query: 248  NGVYFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVGD-PSPQIYSKIM 72
            NGVYFL  LG+PT D +R VV+ L++ K  G  +++ E+ EA KL +   PS Q+Y KIM
Sbjct: 547  NGVYFLTQLGDPTQDPFREVVIALLKQKSAG--LQRSEIMEAFKLALRKMPSNQLYQKIM 604

Query: 71   KELCTSKGGGWVLKTGDG 18
            KELC ++G  WVLKTGDG
Sbjct: 605  KELCYTRGATWVLKTGDG 622


>ref|XP_006837050.1| hypothetical protein AMTR_s00110p00061160 [Amborella trichopoda]
            gi|548839643|gb|ERM99903.1| hypothetical protein
            AMTR_s00110p00061160 [Amborella trichopoda]
          Length = 763

 Score =  366 bits (940), Expect = 2e-98
 Identities = 226/618 (36%), Positives = 348/618 (56%), Gaps = 13/618 (2%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPH-IDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLA 1656
            EDR++R ID+   P  IDPDT++Y+ QYPLR  WR Y  +ERCQEVR++PKQ + E DL 
Sbjct: 162  EDRLVRTIDLFLVPSPIDPDTQLYINQYPLRACWRPYEFDERCQEVRIRPKQSKVEFDLT 221

Query: 1655 MDENGENYDDNADEYLKISKQTLTSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            +D+    YD N D+ ++I+KQTLTS +A LA  Y +GIL G+KL L  VQ  +QLRP M 
Sbjct: 222  VDDKSPYYDPNTDDDMRITKQTLTSMEASLATGYGVGILSGSKLFLNRVQAVLQLRPSMD 281

Query: 1475 HIAQGLDDIKR--SRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKL 1302
            H+ +   D ++  SR +       +K K     P+ +    E ++    R          
Sbjct: 282  HLKKSAQDSRKNDSRTSEEPTTSNKKSKQESVGPSKIQATDEGQKASTSR---------E 332

Query: 1301 EEEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQL 1122
            +E EPWI LE +G ++   +   +K+VT E+ +    M+ +HYI + +PGR S       
Sbjct: 333  DEPEPWITLEYHGMESPTRDYFWQKMVTEENSQQQLFMSVNHYITSWIPGRDSAPLERAC 392

Query: 1121 --HGDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFAS-GHSTEEVLNVV 951
              HG    ++ LS    D+L L++ IK + S+ + ++  FE LMR A  G + +EVL V+
Sbjct: 393  INHGRGASDSSLS----DALSLEEHIKLLLSKGQNEILPFEILMRHAPVGLTEQEVLKVL 448

Query: 950  KTYAFLVQGCWVPASIFHYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVRE-VL 774
            + +A LVQG WVP S   Y  + C VRDY+LLLF K + I +++++ L   K  + E V+
Sbjct: 449  QKHAHLVQGYWVPKSPLRYEAEYCKVRDYILLLFHKERVIQHDEVKGLLSWKTEIFEKVM 508

Query: 773  SYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQ 594
            + +  +  +   W F+  T K+F+++++ + ++Q+  WL  E  +  +   +K      +
Sbjct: 509  NPLGSRNRELKRWEFKLPTQKSFLQSHENVVEDQSRLWLSLEKHLMDSLPWLKN-----K 563

Query: 593  ASNISSGESLDQLKRSAV---NGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREIL 423
            ASN      ++    S+V   +G G+   K+        + S MS+E R +++ ALR++ 
Sbjct: 564  ASNSRVSSKINTKGSSSVAPLSGRGDQPAKSVADGAQISERSIMSEEVREAISDALRDVF 623

Query: 422  SS-HVCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNIN 246
               HVC+L  +R  L++L   K         V   AAA GA A   EL S +++VA NI+
Sbjct: 624  KKYHVCSLPMLRSGLRDLGISKSVTPKAATRV-AAAAAHGAAASDAELLSHVNKVAVNIH 682

Query: 245  GVYFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVG--DPSPQIYSKIM 72
            GVY LKSL NP +D  R VV+ L+ A  P A ++KVEV +A K++    D  P +Y +++
Sbjct: 683  GVYALKSLSNPLLDPLREVVISLLCASKPKAKLKKVEVMQAFKIKFNKEDVPPNVYKQVL 742

Query: 71   KELCTSKGGGWVLKTGDG 18
             ELC S+ GGWVLK+GDG
Sbjct: 743  TELCVSQAGGWVLKSGDG 760


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  355 bits (912), Expect = 3e-95
 Identities = 228/616 (37%), Positives = 339/616 (55%), Gaps = 11/616 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P +D ++K+Y++QYPLRP WR Y  E RC EVRVKP     EVDL +
Sbjct: 117  EDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNV 176

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D    NYD+ AD   ++ KQTLTS+ +  LA +YA+G+L GNKL+L PV   VQLRP   
Sbjct: 177  DIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFE 236

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+  G    K +   V    D + E+ V+   A  S K + +      +       K  +
Sbjct: 237  HLNSGGPKRKNN---VRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEV-------KTRD 286

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            EE WI L+ YG ++ ++   L+ +V+     + F+M+ H Y+D+L PG TST+ N     
Sbjct: 287  EECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPG-TSTSGNKP--- 342

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                  G S+ YL SL L++RIK + ++    V RF +L  +A  + TEE +  ++ YA 
Sbjct: 343  -----KGPSKKYLLSLSLEERIKKLLTEGP-PVQRFSALKHYAPDYETEEFIETLQQYAQ 396

Query: 935  LVQGCWVPASIF--HYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSYIA 762
            LVQG WVP S+F     G     RD+VL LFSKN  +   Q+      ++RV+  L+   
Sbjct: 397  LVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFG 456

Query: 761  DQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASNI 582
             ++P    W F+E+TD+ F+ N+  I ++Q E W   E       F+  +++  +  +N 
Sbjct: 457  VERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVE-----KGFTFLRSIKSVHHANA 511

Query: 581  SSGE-----SLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSS 417
            ++G+      L++   S    T   N   N K         MS E+R +L  AL+++  +
Sbjct: 512  ATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRK-------GAMSDETREALPKALQKLFQN 564

Query: 416  H-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGV 240
            H VC+ + I Q L++LA  + T   K +A   +AAA G  AP  EL  +I QVA+ I+G+
Sbjct: 565  HKVCSFQLICQGLRDLAVSQSTL-PKADARMAVAAAYGVDAPPDELXKIISQVATEIHGL 623

Query: 239  YFL-KSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVGDP-SPQIYSKIMKE 66
            Y L  S  +P  D  R VV++L+R +GP A+++K +V EA K E+G   +   YSK+M E
Sbjct: 624  YVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNE 683

Query: 65   LCTSKGGGWVLKTGDG 18
            +C S G  W LK+GDG
Sbjct: 684  ICISHGSSWTLKSGDG 699


>ref|XP_004149158.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis
            sativus]
          Length = 702

 Score =  355 bits (912), Expect = 3e-95
 Identities = 228/616 (37%), Positives = 339/616 (55%), Gaps = 11/616 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P +D ++K+Y++QYPLRP WR Y  E RC EVRVKP     EVDL +
Sbjct: 117  EDMVVREIDVLFTPSVDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNV 176

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D    NYD+ AD   ++ KQTLTS+ +  LA +YA+G+L GNKL+L PV   VQLRP   
Sbjct: 177  DIESNNYDNKADGTFQMKKQTLTSSWQPPLATSYAVGLLMGNKLHLNPVHAVVQLRPSFE 236

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+  G    K +   V    D + E+ V+   A  S K + +      +       K  +
Sbjct: 237  HLNSGGPKRKNN---VRADSDVKSEEHVDVNSAGASRKQKKQTGPSTEV-------KTRD 286

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            EE WI L+ YG ++ ++   L+ +V+     + F+M+ H Y+D+L PG TST+ N     
Sbjct: 287  EECWIPLKYYGLESDLSTRHLQSMVSQTVSPMQFSMSPHDYMDSLCPG-TSTSGNKP--- 342

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                  G S+ YL SL L++RIK + ++    V RF +L  +A  + TEE +  ++ YA 
Sbjct: 343  -----KGPSKKYLLSLSLEERIKKLLTEGP-PVQRFSALKHYAPDYETEEFIETLQQYAQ 396

Query: 935  LVQGCWVPASIF--HYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSYIA 762
            LVQG WVP S+F     G     RD+VL LFSKN  +   Q+      ++RV+  L+   
Sbjct: 397  LVQGLWVPKSLFLIPQDGSGRCARDFVLFLFSKNPVVSSSQINVPKSLRDRVKHFLNLFG 456

Query: 761  DQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASNI 582
             ++P    W F+E+TD+ F+ N+  I ++Q E W   E       F+  +++  +  +N 
Sbjct: 457  VERPAFKDWKFKEKTDRLFLSNHVRIAEKQEELWNNVE-----KGFTFLRSIKSVHHANA 511

Query: 581  SSGE-----SLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSS 417
            ++G+      L++   S    T   N   N K         MS E+R +L  AL+++  +
Sbjct: 512  ATGKPGVVPKLEKQVSSDQTTTKSSNAPLNRK-------GAMSDETREALPKALQKLFQN 564

Query: 416  H-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGV 240
            H VC+ + I Q L++LA  + T   K +A   +AAA G  AP  EL  +I QVA+ I+G+
Sbjct: 565  HKVCSFQLICQGLRDLAVSQSTL-PKADARMAVAAAYGVDAPPDELKKIISQVATEIHGL 623

Query: 239  YFL-KSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVGDP-SPQIYSKIMKE 66
            Y L  S  +P  D  R VV++L+R +GP A+++K +V EA K E+G   +   YSK+M E
Sbjct: 624  YVLTSSPEHPEYDPLRKVVIQLLRGRGPKAVLKKADVLEASKHELGRAINSNEYSKVMNE 683

Query: 65   LCTSKGGGWVLKTGDG 18
            +C S G  W LK+GDG
Sbjct: 684  ICISHGSSWTLKSGDG 699


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  320 bits (821), Expect = 1e-84
 Identities = 213/615 (34%), Positives = 327/615 (53%), Gaps = 10/615 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPH-IDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLA 1656
            ED V+REIDV F P   D +TK+Y++QYPLRP+WR Y L ERC EVRVKP     EVDL+
Sbjct: 99   EDPVVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLS 158

Query: 1655 MDENGENYDDNADEYLKISKQTL-TSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLM 1479
            +D + +NYD +A    ++ KQTL TS K      Y +G+L GNKL+L P+   VQLRP M
Sbjct: 159  IDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSM 218

Query: 1478 THIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLE 1299
             +++ G    KR        + A K +    + ++ S+K      +Q ++      +  +
Sbjct: 219  EYLSSG--GAKRKNNVTGDTNSAVKLEVSNEEESVGSLK------KQNKIMGILDEQNTD 270

Query: 1298 EEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLH 1119
              E W+ L+ +  ++  +   L+K+V  ++  I F M+ + Y+++L P   S   N    
Sbjct: 271  AAESWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNR--- 327

Query: 1118 GDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYA 939
                 + GLSR +L S+ L++R K +  +    V RF +L  FA  +S E+VL V+  +A
Sbjct: 328  -----SKGLSRRFLLSMPLEERFKTLLCEGP-PVHRFSALKHFAPDNSVEDVLGVLTKHA 381

Query: 938  FLVQGCWVPASIFHY---RGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSY 768
             LVQG WVP S   +   +G   L RDY+LLLFSK   I+Y Q++  G   + ++  LS 
Sbjct: 382  HLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSI 441

Query: 767  IADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQAS 588
            +A ++P    W F+E TD +F++ +  I +EQ   W   E          KQ    I   
Sbjct: 442  LAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLE----------KQITDIIHGG 491

Query: 587  NISSGESLDQLKRSAVNGTGELNKK---ANMKEKLQLDGSTMSQESRTSLALALREILSS 417
                  + +  K S  N TG   K            +  + MS E+R +L  AL E+   
Sbjct: 492  GRRGPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRRTAMSAETREALPKALEEVFRL 551

Query: 416  H-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGV 240
            H VC+ + I Q+L++LA  K T+  K +    +AAA GA AP  EL ++I + A+ ++GV
Sbjct: 552  HKVCSFQLICQALRDLAVSKSTS-PKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGV 610

Query: 239  YFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEV-GDPSPQIYSKIMKEL 63
            Y  K+  +   +  R VVV L   K P A +++ ++ EA K+ +  + +   Y+K++ EL
Sbjct: 611  YVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSEL 670

Query: 62   CTSKGGGWVLKTGDG 18
            C S+G  WVLK+GDG
Sbjct: 671  CESRGSLWVLKSGDG 685


>gb|EMJ03134.1| hypothetical protein PRUPE_ppa002228mg [Prunus persica]
          Length = 698

 Score =  316 bits (810), Expect = 2e-83
 Identities = 215/626 (34%), Positives = 340/626 (54%), Gaps = 21/626 (3%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED ++REIDV F PHID ++++Y++QYPLRP WR Y LE RC+EVR+KP     E+DL++
Sbjct: 107  EDTIVREIDVFFNPHIDDNSQLYVLQYPLRPWWRPYELENRCEEVRLKPATSEMEIDLSL 166

Query: 1652 DENGENYDDNADEYLKISKQTLTST---KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPL 1482
            + + +NYD++    LK++KQTL +T          YA+G+L G+KL+L P+ + VQLRP 
Sbjct: 167  NLDPKNYDEDCGNRLKMTKQTLYTTWKPTRTTGTGYAVGVLMGDKLHLNPIDKVVQLRPS 226

Query: 1481 MTHIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKL 1302
            + H+  G      SR+  ++  DAE +  +E      S  P  ++ +++   +    KK 
Sbjct: 227  LEHLKSG-----SSRRKNSVTGDAEVKVKLEESRQETSSGPSKKQTKRMESSTE---KKT 278

Query: 1301 EEEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQL 1122
            E+EE W+ L+ +  ++  + + L ++V  E   I F M+ + Y+++L P RT        
Sbjct: 279  EDEESWVPLQYHSSESDFSAKYLRRMVGQESSPIQFTMSPYDYVNSLCP-RTC------- 330

Query: 1121 HGDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMR-FASGHSTEEVLNVVKT 945
                    G SR +L SL L++RIK +  ++ +   RF  L + FA  H+ EE+L+V++ 
Sbjct: 331  -------KGSSRRFLLSLPLEERIKKLLVEEPL-ARRFSDLKKYFAPDHTGEELLDVLQK 382

Query: 944  YAFLV--QGCWVPASIFHY-------RGDLC--LVRDYVLLLFSKNKNIHYEQLEELGLP 798
            +A L+   G WVP ++  Y       R  +     R+YVL LF KN  I   QL      
Sbjct: 383  HAQLLLDSGLWVPKTLLLYPSKDMKDRDHVARQTARNYVLNLFRKNTVISNSQLNLPQNH 442

Query: 797  KERVREVLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSI 618
            K    E L  +A  +P    W  +E++DK+F      IFK Q + W + E+ +  A  + 
Sbjct: 443  KNHAYESLKILAVSRPSSQDWKLKEQSDKSFKELYPDIFKSQEQNWERMEEKLVNAFKA- 501

Query: 617  KQALHGIQASNISS--GESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLA 444
                 G++ + ++S  G+SL+  K +  + +            +Q+ G TMS E+R +L 
Sbjct: 502  -HTDRGVKNACMTSKPGKSLNSDKGTTKSAS-----------DVQIGGRTMSDETRAALP 549

Query: 443  LALREILSSH-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMA-AAKGATAPLGELTSVI 270
             A++E+L  H VCN + I + L+ LA  K +        K +  AA G  AP  EL  VI
Sbjct: 550  EAIKEVLHEHKVCNFRLICEGLRRLAVRKSSLPKVDPKTKRVIDAAYGVDAPQHELQKVI 609

Query: 269  DQVASNINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEV-GDPS 96
             QVA++I+G+Y LKS   +   D  R VV+ L+  KGP A +++ EVFEA K+ +  D +
Sbjct: 610  CQVAADIHGLYVLKSSPEHSEHDRLRKVVIDLLCTKGPNAKLKRGEVFEAAKIALERDIN 669

Query: 95   PQIYSKIMKELCTSKGGGWVLKTGDG 18
               Y+K+M + C  KG  W+LK+GDG
Sbjct: 670  TNEYNKVMNDFCVFKGSAWILKSGDG 695


>gb|EOX91148.1| SIN-like family protein, putative isoform 1 [Theobroma cacao]
          Length = 700

 Score =  315 bits (808), Expect = 3e-83
 Identities = 212/613 (34%), Positives = 323/613 (52%), Gaps = 8/613 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P ID +T++Y++QYPLRP WR Y L+ERC+EVRVKP     E+DLA+
Sbjct: 118  EDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAV 177

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D +  NYD      LK++KQTL+S+        YA+G+L G+KL+L P+   VQLRP M 
Sbjct: 178  DVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMC 237

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+   +   +++  A +     + E+P + K A  S K     Q           +K ++
Sbjct: 238  HLKPSVSK-RKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTE-------QKADD 289

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            +E W+ L+ +   N  + + L++++  E C I F M+ + Y+D+L PG    ++N++  G
Sbjct: 290  KECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG---ASNNNKAQG 346

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                    SR  L S+ L++R+K + S+      RF +L  FA   S E++  V++ +A 
Sbjct: 347  P-------SRRLLLSIPLEERLKKLLSEGP-PFHRFSALKHFAPDASIEDIFEVLQKHAL 398

Query: 935  LVQGCWVPASIFHYRGD--LCLVRDYVLLLFSKNKNIHYEQLEELG-LPKERVREVLSYI 765
            LVQG WVP S   +  D    L RDYVLLLFSKN  I   Q+  L    KE V+  L  +
Sbjct: 399  LVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKIL 458

Query: 764  ADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASN 585
            A ++P    W  +E  D+ F +    I K Q + W   ED +      I     G +   
Sbjct: 459  AIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNV------INHICRGAKGGP 512

Query: 584  ISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSSH-VC 408
              +          A+N    + + A   +     G TMS E+R ++  AL+++  +H VC
Sbjct: 513  SRTKPGTVIKPEKAMNSDKGVRRVAPAVQA----GRTMSDETREAIPKALKKVFQTHKVC 568

Query: 407  NLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFL- 231
            +L+ IR+ L++LA  + T   K +A   + AA GA AP  EL  V+ +VA  ++G  F+ 
Sbjct: 569  SLQLIRKGLRDLALSQSTL-PKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVL 627

Query: 230  -KSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEV-GDPSPQIYSKIMKELCT 57
              S  +P  D  R VV+ L+R KG    ++K +V  A  L +  + S   Y+K+M + C 
Sbjct: 628  RSSPEHPEYDPLREVVINLLRVKGK---LKKADVSAAALLSLKREISNNEYNKVMSDFCE 684

Query: 56   SKGGGWVLKTGDG 18
             K   WVLK+GDG
Sbjct: 685  YKSSWWVLKSGDG 697


>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  315 bits (808), Expect = 3e-83
 Identities = 214/615 (34%), Positives = 325/615 (52%), Gaps = 10/615 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPH-IDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLA 1656
            ED V+REIDV F P   D +TK+Y++QYPLRP+WR Y L ERC EVRVKP     EVDL+
Sbjct: 99   EDPVVREIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLS 158

Query: 1655 MDENGENYDDNADEYLKISKQTL-TSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLM 1479
            +D + +NYD +A    ++ KQTL TS K      Y +G+L GNKL+L P+   VQLRP M
Sbjct: 159  IDVDSKNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSM 218

Query: 1478 THIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLE 1299
             +++ G      +++  N+  D              +VK E   +E+    S    KK  
Sbjct: 219  EYLSSG-----GAKRKNNVTGDTNS-----------AVKLEVSNEEE----SVGSLKK-- 256

Query: 1298 EEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLH 1119
              + W+ L+ +  ++  +   L+K+V  ++  I F M+ + Y+++L P   S   N    
Sbjct: 257  --QSWVPLKYHSSESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNR--- 311

Query: 1118 GDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYA 939
                 + GLSR +L S+ L++R K +  +    V RF +L  FA  +S E+VL V+  +A
Sbjct: 312  -----SKGLSRRFLLSMPLEERFKTLLCEGP-PVHRFSALKHFAPDNSVEDVLGVLTKHA 365

Query: 938  FLVQGCWVPASIFHY---RGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSY 768
             LVQG WVP S   +   +G   L RDY+LLLFSK   I+Y Q++  G   + ++  LS 
Sbjct: 366  HLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSKGPLINYSQVDVPGSLNKALKGFLSI 425

Query: 767  IADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQAS 588
            +A ++P    W F+E TD +F++ +  I +EQ   W   E          KQ    I   
Sbjct: 426  LAVERPSFRDWKFKEPTDVSFMKLHPDIVREQRRVWESLE----------KQITDIIHGG 475

Query: 587  NISSGESLDQLKRSAVNGTGELNKK---ANMKEKLQLDGSTMSQESRTSLALALREILSS 417
                  + +  K S  N TG   K            +  + MS E+R +L  AL E+   
Sbjct: 476  GRRGPVTKNSGKPSIANKTGTSTKSDGATRATNGTPVRRTAMSAETREALPKALEEVFRL 535

Query: 416  H-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGV 240
            H VC+ + I Q+L++LA  K T+  K +    +AAA GA AP  EL ++I + A+ ++GV
Sbjct: 536  HKVCSFQLICQALRDLAVSKSTS-PKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGV 594

Query: 239  YFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEV-GDPSPQIYSKIMKEL 63
            Y  K+  +   +  R VVV L   K P A +++ ++ EA K+ +  + +   Y+K++ EL
Sbjct: 595  YVWKTSEHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKVVSEL 654

Query: 62   CTSKGGGWVLKTGDG 18
            C S+G  WVLK+GDG
Sbjct: 655  CESRGSLWVLKSGDG 669


>ref|XP_006425717.1| hypothetical protein CICLE_v10025048mg [Citrus clementina]
            gi|568824759|ref|XP_006466762.1| PREDICTED: DNA-directed
            RNA polymerase III subunit RPC5-like [Citrus sinensis]
            gi|557527707|gb|ESR38957.1| hypothetical protein
            CICLE_v10025048mg [Citrus clementina]
          Length = 690

 Score =  309 bits (792), Expect = 2e-81
 Identities = 206/613 (33%), Positives = 316/613 (51%), Gaps = 12/613 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED ++REIDV F P ID D+K+Y++QYPLRP WR Y L+ERC+EVRVKP     E+DL++
Sbjct: 110  EDMIVREIDVFFTPSIDADSKLYVMQYPLRPLWRPYELDERCEEVRVKPSTSEVEMDLSI 169

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D +  N+D      L + KQTL++T     A  YAIG+L GNKL+L P+   VQLR  M 
Sbjct: 170  DVDSNNWDSEKASRLSMPKQTLSTTWMPPQATGYAIGVLIGNKLHLNPIHAVVQLRTSMG 229

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
             +  G    K         ++   E PV+ + +       + +++  R+ S +  ++  E
Sbjct: 230  FLKSGGSKRK---------NNVASEIPVKLEDSNQDKSVGSSKKQNKRMGSIE--QRSNE 278

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            EE W+ L+ +G  +  +   L++++  E+  I F MN + Y+ +L PG  S         
Sbjct: 279  EECWVPLKYHGSKSDFSARYLQRMLVEENSPIHFTMNPYDYVSSLCPGAGS--------- 329

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
            ++T + G SR +L S+ L++R K +  +    V RF +LM FA   + E+V+ V+     
Sbjct: 330  NNTKSKGPSRRFLLSMPLEERFKKLLCEGE-PVQRFSTLMHFAPNDTVEDVIGVLHKNGL 388

Query: 935  LVQGCWVPASIFHYRGD--LCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSYIA 762
            LVQG W P S   +  D   CL RDYVLL FSKN  + ++ L      ++ ++  L+  A
Sbjct: 389  LVQGLWAPRSPLLFNNDKMKCLARDYVLLSFSKNSVVKFQHLSVSPKLRDHIKCFLNIFA 448

Query: 761  DQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASNI 582
             ++P    W FR++TD +FI+ +  I  +Q + W   E  I      + +          
Sbjct: 449  VERPDFKDWKFRQQTDLSFIKEHPNIVIKQEQVWAAAEKQITDVINKLGK---------- 498

Query: 581  SSGESL--DQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSSH-V 411
             SG +L  D  K + VN   +    +N           +S ESR +L  AL+++   H V
Sbjct: 499  -SGSTLRNDAGKSAMVNKHLKAINSSNGPSGALTGNKNLSNESREALPKALQKLFQIHKV 557

Query: 410  CNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAA--AKGATAPLGELTSVIDQVASNINGVY 237
            C+L  I+Q L++LA  + T       +  +AA     +     E   VI QVA+NI+G Y
Sbjct: 558  CSLPLIKQGLRDLAISQSTLPKADARMTVLAAEIVDSSFVDTQEFAEVISQVATNIHGFY 617

Query: 236  FLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEAC----KLEVGDPSPQIYSKIMK 69
              KS  +P     R VV  L+ A GP A ++K +V EA     K E+ +     YSK+M 
Sbjct: 618  VSKSSEDPQHGPLRKVVTDLLLAGGPDAKLKKADVVEAARHVLKREISNAE---YSKVMS 674

Query: 68   ELCTSKGGGWVLK 30
            ++C SKG  W+LK
Sbjct: 675  DICESKGSAWILK 687


>ref|XP_002310208.2| hypothetical protein POPTR_0007s12540g [Populus trichocarpa]
            gi|550334731|gb|EEE90658.2| hypothetical protein
            POPTR_0007s12540g [Populus trichocarpa]
          Length = 667

 Score =  305 bits (780), Expect = 6e-80
 Identities = 219/620 (35%), Positives = 331/620 (53%), Gaps = 15/620 (2%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            +D V+REIDV + P +DP+T++Y++QYPLRP WR Y L+ERC+EVRVKP+    EVDL++
Sbjct: 108  DDVVVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSI 167

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D+  +NYD +    L + KQTL+S+     A  YA+G+L GNKL+L P+   VQLRP M 
Sbjct: 168  DDT-KNYDPDIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMD 226

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            +++ G     + +K    G+D+ + KP+               ++Q +  S  + +K + 
Sbjct: 227  YLSSG---NSKGKKNATSGEDSNEGKPLGLP------------KKQSKQMSSGNEQKPDV 271

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            EE WI L+ +G  + +++  L+ +V  E   I F MN + Y+ +L PG   + +N +L+G
Sbjct: 272  EESWIPLKYHGSKSDLSSRYLQNMVAPESSTIEFAMNPYDYMSSLCPG--ISNNNIKLNG 329

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                    SR  L SL L++RIK +F +    + RF +L       S E++L V++ Y  
Sbjct: 330  P-------SRRVLLSLPLEERIKRLFLEGP-PIHRFAALRHLIPNDSIEDLLIVLQEYGQ 381

Query: 935  LVQGCWVPASIFHYRGD------LCLVRDYVLLLFSKNKNIHYEQLEELGLPKER--VRE 780
            LVQG WVP +   +             RDY+LLLFSK+  +      EL +P +   ++ 
Sbjct: 382  LVQGLWVPKTSLLFPNPKPTEKVKLAARDYILLLFSKSLVV---TPSELNVPMKPLILKS 438

Query: 779  VLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHG 600
             L+  A ++P    W F+E  D  F+     I ++Q + W                    
Sbjct: 439  FLNIFAVERPSFKDWKFKENVDTLFVELYPDIVRKQEQAW-------------------E 479

Query: 599  IQASNISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILS 420
            +   NIS+  + D+  +S       ++K    K K      TM+ E+R +L  AL ++L 
Sbjct: 480  VMGKNISA--AFDRAGKS-------VSKNVITKPK-----KTMTDETREALRKALPKVLQ 525

Query: 419  SH-VC--NLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNI 249
            +H VC    + I Q L+ LA  + T   K +    +AAA GA AP  EL  VI +VA+NI
Sbjct: 526  THKVCRYGFQMICQGLRQLAISQSTL-PKADPRIAVAAASGAEAPPEELQEVISEVATNI 584

Query: 248  NGVYFLKSL-GNPTIDAY-RNVVVKLIRAKGPGAIIRKVEVFEACKLEV-GDPSPQIYSK 78
            +G Y LKS   +P  D   R VV+ L  A+GP A I+K EV  A +LE+  +PS   Y K
Sbjct: 585  HGFYVLKSSPEHPDFDPLSRKVVIGLFLARGPNANIKKSEVQAAARLELKREPSNSEYIK 644

Query: 77   IMKELCTSKGGGWVLKTGDG 18
            +M +LC SKG  WVLK+GDG
Sbjct: 645  VMTDLCESKGSAWVLKSGDG 664


>gb|EOX91150.1| Transcription regulators,zinc ion binding, putative isoform 3
            [Theobroma cacao]
          Length = 736

 Score =  299 bits (766), Expect = 2e-78
 Identities = 213/649 (32%), Positives = 327/649 (50%), Gaps = 44/649 (6%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P ID +T++Y++QYPLRP WR Y L+ERC+EVRVKP     E+DLA+
Sbjct: 118  EDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAV 177

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D +  NYD      LK++KQTL+S+        YA+G+L G+KL+L P+   VQLRP M 
Sbjct: 178  DVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMC 237

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+   +   +++  A +     + E+P + K A  S K     Q           +K ++
Sbjct: 238  HLKPSVSK-RKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTE-------QKADD 289

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            +E W+ L+ +   N  + + L++++  E C I F M+ + Y+D+L PG    ++N++  G
Sbjct: 290  KECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG---ASNNNKAQG 346

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                    SR  L S+ L++R+K + S+      RF +L  FA   S E++  V++ +A 
Sbjct: 347  P-------SRRLLLSIPLEERLKKLLSEGP-PFHRFSALKHFAPDASIEDIFEVLQKHAL 398

Query: 935  LVQGCWVPASIFHYRGD--LCLVRDYVLLLFSKNKNIHYEQLEELG-LPKERVREVLSYI 765
            LVQG WVP S   +  D    L RDYVLLLFSKN  I   Q+  L    KE V+  L  +
Sbjct: 399  LVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKIL 458

Query: 764  ADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASN 585
            A ++P    W  +E  D+ F +    I K Q + W   ED +      I     G +   
Sbjct: 459  AIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNV------INHICRGAKGGP 512

Query: 584  ISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSSH-VC 408
              +          A+N    + + A   +     G TMS E+R ++  AL+++  +H VC
Sbjct: 513  SRTKPGTVIKPEKAMNSDKGVRRVAPAVQA----GRTMSDETREAIPKALKKVFQTHKVC 568

Query: 407  NLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNIN-GVYFL 231
            +L+ IR+ L++LA  + T   K +A   + AA GA AP  EL  V+ +VA  ++ G++ L
Sbjct: 569  SLQLIRKGLRDLALSQSTL-PKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVL 627

Query: 230  KS--------------------------------LGNPTIDA-----YRNVVVKLIRAKG 162
            +S                                L NP+  +      R VV+ L+R KG
Sbjct: 628  RSSPEHPEYDPLRLHKYVQLVFKWEEMFMVSMFFLQNPSFSSELFFPCREVVINLLRVKG 687

Query: 161  PGAIIRKVEVFEACKLEV-GDPSPQIYSKIMKELCTSKGGGWVLKTGDG 18
                ++K +V  A  L +  + S   Y+K+M + C  K   WVLK+GDG
Sbjct: 688  K---LKKADVSAAALLSLKREISNNEYNKVMSDFCEYKSSWWVLKSGDG 733


>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  298 bits (764), Expect = 4e-78
 Identities = 212/609 (34%), Positives = 310/609 (50%), Gaps = 4/609 (0%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED ++REIDV   P IDP+TK+Y++QYPLRP WR Y L++RC+EVRVK K    EVDLA+
Sbjct: 104  EDEIVREIDVYLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAV 163

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D + +NYD +AD  + ++KQTLTS+ K  + A YA+G+L GNKL+L P+   VQLRP M 
Sbjct: 164  DVDSKNYDSDADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQ 223

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H     +  KR   A +  +D  K + V         KP     EQ +          + 
Sbjct: 224  HYKP--ESSKRRTTASSNLEDNTKGEEVTTGSLKKQGKPSGPVIEQNK----------DT 271

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
             E WI L  +G  + ++   + K+V  +   I F+MN H Y++ L PG    TSN     
Sbjct: 272  REDWIPLNYHGARSDISMSYVRKMVEHDSSHIQFSMN-HDYVNTLCPG----TSN----- 321

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
            ++ G+ G SR  L SL L++R +    Q    + RF++L   A   S E++L V+  +A 
Sbjct: 322  ENNGSNGPSRVLL-SLPLEERFRTWLLQGP-PIHRFDALKHLAPDASVEDILAVLSQHAQ 379

Query: 935  LVQGCWVPASIFHY---RGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSYI 765
            LVQG W+P S   Y   +G   L RDYVLLLFS+   I+  QL +       +R+VL  +
Sbjct: 380  LVQGLWIPKSSLLYGKDQGIDALARDYVLLLFSRTPIINNSQLPQQQKLNRAMRDVLDTV 439

Query: 764  ADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASN 585
            A ++     W F+E  D TFI+ N  I +EQ + W + E  I +  F  K        + 
Sbjct: 440  AFERVSLNDWKFKEPPDMTFIKLNPKIVREQEQTWERLEKLITEKIFGDK--------NR 491

Query: 584  ISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSSHVCN 405
             ++  S   L  +    +  L+K A+      +    MS+E+R +L  AL+++  SH   
Sbjct: 492  PATKNSSRPLTTNNPATSKSLSKHASNSLNAGVPRRPMSEETREALPKALQKLFQSHKVC 551

Query: 404  LKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFLKS 225
             ++I Q L+ +A V  ++  K  A + +AAA G  AP  EL ++I QVA NI+GVY LKS
Sbjct: 552  FQQICQRLREMA-VSESSRPKGFAREAIAAAHGVEAPPEELQAIISQVAINIHGVYVLKS 610

Query: 224  LGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVGDPSPQIYSKIMKELCTSKGG 45
                                                       P+    +++ELC S+G 
Sbjct: 611  ---------------------------------------SPVHPEHDEFVVQELCVSQGS 631

Query: 44   GWVLKTGDG 18
             WVLK+GDG
Sbjct: 632  AWVLKSGDG 640


>gb|EOX91149.1| Transcription regulators,zinc ion binding, putative isoform 2
            [Theobroma cacao]
          Length = 588

 Score =  293 bits (751), Expect = 1e-76
 Identities = 202/598 (33%), Positives = 313/598 (52%), Gaps = 8/598 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P ID +T++Y++QYPLRP WR Y L+ERC+EVRVKP     E+DLA+
Sbjct: 21   EDMVVREIDVFFTPSIDANTQLYVLQYPLRPCWRPYELDERCEEVRVKPASGEVEMDLAV 80

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D +  NYD      LK++KQTL+S+        YA+G+L G+KL+L P+   VQLRP M 
Sbjct: 81   DVDSNNYDSERASRLKMTKQTLSSSWLPPRTTGYAVGVLMGDKLHLNPIHAVVQLRPSMC 140

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+   +   +++  A +     + E+P + K A  S K     Q           +K ++
Sbjct: 141  HLKPSVSK-RKNAAAADAEVTVKVEEPNDGKAAGSSTKQNKRMQSSTE-------QKADD 192

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            +E W+ L+ +   N  + + L++++  E C I F M+ + Y+D+L PG    ++N++  G
Sbjct: 193  KECWVPLKYHSSKNDFSAQYLQRMMAEESCRIQFTMSPYDYVDSLCPG---ASNNNKAQG 249

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                    SR  L S+ L++R+K + S+      RF +L  FA   S E++  V++ +A 
Sbjct: 250  P-------SRRLLLSIPLEERLKKLLSEGP-PFHRFSALKHFAPDASIEDIFEVLQKHAL 301

Query: 935  LVQGCWVPASIFHYRGD--LCLVRDYVLLLFSKNKNIHYEQLEELG-LPKERVREVLSYI 765
            LVQG WVP S   +  D    L RDYVLLLFSKN  I   Q+  L    KE V+  L  +
Sbjct: 302  LVQGLWVPKSSLLFPEDPYKSLARDYVLLLFSKNPIISLAQVHALSPSRKEEVKGFLKIL 361

Query: 764  ADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASN 585
            A ++P    W  +E  D+ F +    I K Q + W   ED +      I     G +   
Sbjct: 362  AIERPSFKDWKLKENADEGFKKLYPDIVKNQEQIWRAGEDNV------INHICRGAKGGP 415

Query: 584  ISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILSSH-VC 408
              +          A+N    + + A   +     G TMS E+R ++  AL+++  +H VC
Sbjct: 416  SRTKPGTVIKPEKAMNSDKGVRRVAPAVQA----GRTMSDETREAIPKALKKVFQTHKVC 471

Query: 407  NLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVYFL- 231
            +L+ IR+ L++LA  + T   K +A   + AA GA AP  EL  V+ +VA  ++G  F+ 
Sbjct: 472  SLQLIRKGLRDLALSQSTL-PKADARMVVKAAYGADAPEHELQEVVSEVAVELHGGLFVL 530

Query: 230  -KSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEV-GDPSPQIYSKIMKEL 63
              S  +P  D  R VV+ L+R KG    ++K +V  A  L +  + S   Y+K ++ +
Sbjct: 531  RSSPEHPEYDPLREVVINLLRVKGK---LKKADVSAAALLSLKREISNNEYNKALRNM 585


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  289 bits (740), Expect = 3e-75
 Identities = 207/582 (35%), Positives = 298/582 (51%), Gaps = 9/582 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED ++REIDV F P ID  T++Y++QYPLRP WR Y L+ERC+EVRVKP+    EVDL +
Sbjct: 114  EDMIVREIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTI 173

Query: 1652 DENGENYDDNADEYLKISKQTL-TSTKAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D++  N+D          KQTL TS        YA+G+L GNKL+L P+   VQLRP + 
Sbjct: 174  DDS-SNWDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLE 232

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+    +D KR   A  +  + + E   E KP   S K                      
Sbjct: 233  HV--NSNDSKRKNSA-TLNPEVKLEDSNEGKPIGSSKK---------------------- 267

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
             + WI L+ +G  +  ++  LEK++  E   + F M  + Y+ +L P      SN     
Sbjct: 268  -QCWISLKYHGSKSDFSSRYLEKMIAQESSPMEFTMTPYDYMSSLCP----VASN----- 317

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
            + T + G  R +L SL L +R+K +  +    V RF  L  FA   S E+VL V++ Y  
Sbjct: 318  EKTKSKGPPRRFLLSLPLAERLKKLILEGP-PVQRFSVLKHFAPDDSVEDVLKVLQEYGQ 376

Query: 935  LVQGCWVPAS--IFHYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVREVLSYIA 762
            LVQG W P S  +F        +RDYVLLLFSKN  I+  Q+      KE ++  L+  A
Sbjct: 377  LVQGLWAPKSSLLFPDANSKQGIRDYVLLLFSKNLVINSSQVNFPVKIKEEIKSFLNLFA 436

Query: 761  DQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHGIQASNI 582
             ++P    W F+E TD TFI+    I K+Q E W   E  + K              S  
Sbjct: 437  VERPSFKDWKFKEHTDTTFIKLYPDIVKKQEEAWDNTEKRLSKV----------FDRSGK 486

Query: 581  SSGESLDQLKRSAVNGTGELNKKANMKE----KLQLDGSTMSQESRTSLALALREILSSH 414
            +S ++         N    L+ + +M +      +L  +T++ E+R +L  AL ++  SH
Sbjct: 487  ASMKNAIPKPPMVHNTVKHLDSEKSMPKIASGMRRLTKTTITVETREALLKALPKVFQSH 546

Query: 413  -VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNINGVY 237
             VC+ + I Q L++LA  + T   K +    +AAA GA AP  EL  +I QVA+NI+G Y
Sbjct: 547  KVCSFQLICQGLRDLAVSQSTL-PKADPRIAVAAASGADAPPEELQEIISQVATNIHGFY 605

Query: 236  FLKSL-GNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKL 114
             LKS   +P  D  R V++ L+ A+GP A ++K EVFEA +L
Sbjct: 606  VLKSSPEHPQYDELRKVIIDLLLARGPNAKLKKAEVFEAARL 647


>ref|XP_006590438.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Glycine
            max]
          Length = 697

 Score =  286 bits (733), Expect = 2e-74
 Identities = 206/632 (32%), Positives = 328/632 (51%), Gaps = 25/632 (3%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P +D  T++Y+ QYPLRP WR Y L+E+C+EVR+K K    E+DL++
Sbjct: 107  EDTVVREIDVFFSPSVDAQTQLYVFQYPLRPSWRPYDLDEQCEEVRLKTKTSEVEIDLSI 166

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D + ++ D        I+KQTL++T K   A   A+G+L G+KL+L PV   VQLRP + 
Sbjct: 167  DLDSDHIDKEFATKYNITKQTLSTTWKPSHANGCAVGLLMGDKLHLHPVHAVVQLRPTLQ 226

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            H+  G     + + A + G +A  +  +E      SV    ++ +Q      +  +K + 
Sbjct: 227  HLNSG---GSKRKNAASTGANATVK--IEGSNEEKSVATSKKQNKQTGPSIIE--QKSDG 279

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
            +E W+ L+ +   + +++  L+++VT E   I F M ++ Y+ AL PG +S         
Sbjct: 280  DECWVPLKYHSCKSDISSRYLQQMVTQESSPINFTMRAYDYVTALCPGGSSNNL------ 333

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                  GLS+ YL SL +++R+K +   + +   RF ++  FA  +S  E+L  ++ +A 
Sbjct: 334  ----PKGLSKRYLLSLPVEERLKKMLEDRPLH--RFSAIKHFAPEYSENELLGFLQQHAI 387

Query: 935  LVQGCWVPASIFHY--RGDLCLVRDYVLLLFSKNKNIHYEQLE-ELGLPKERVREVLSYI 765
            LV G W   S   Y   G   L RDY LLLFSK+  + +  +    G    RVR  L   
Sbjct: 388  LVWGLWTAKSSLLYPDGGVETLARDYSLLLFSKSLKVQFSDVSIRGGELVNRVRNCLKIF 447

Query: 764  ADQK--------PQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQA 609
              ++             W FRE  D++F +    I ++Q E +   E             
Sbjct: 448  GVERNDLDKSTGKPNPYWKFRELPDESFKKLYPDIVEKQEELFKGLEK------------ 495

Query: 608  LHGIQASNISSGESLDQLKRSAVNGTG---ELNKKANMKEKLQLDG------STMSQESR 456
                Q S  SS     ++ ++AV   G   E++K  +  +++   G       TMS E+R
Sbjct: 496  ----QLSGFSSNVGKRKIGKNAVANQGVNTEVHKSESSDQRVTSLGRVPPAKMTMSNETR 551

Query: 455  TSLALALREILSSH-VCNLKEIRQSLQNLAKVKG--TAGNKKEAVKGMAAAKGATAPLGE 285
             +L +AL+++  +H VC+ K I + L+ +A  K   + G+ K AV    AA     P  E
Sbjct: 552  HALPIALKKLFQTHKVCSFKLICEGLREMAVSKAMLSKGDSKMAVD---AAHSLDGPHNE 608

Query: 284  LTSVIDQVASNINGVYFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVG 105
            L +VI +VA  ING Y LKS  +   D +R+VV+ ++   GP A ++K E+ EA + ++G
Sbjct: 609  LMAVISEVACEINGSYVLKSSPD---DPFRDVVIDMLCGSGPNAKLKKAEILEAARRKLG 665

Query: 104  -DPSPQIYSKIMKELCTSKGGGWVLKTGDGTE 12
             + +   Y+K+M ELC SKG  WVLK+GDG++
Sbjct: 666  REVASNEYTKVMSELCVSKGSVWVLKSGDGSK 697


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
            gi|358344405|ref|XP_003636280.1| DNA-directed RNA
            polymerase III subunit RPC5 [Medicago truncatula]
            gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
            gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
            III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score =  286 bits (732), Expect = 2e-74
 Identities = 202/618 (32%), Positives = 323/618 (52%), Gaps = 11/618 (1%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P ID DTK+Y++QYPLRP WR Y L+E+C+EVR+KP     EVDL++
Sbjct: 105  EDTVVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDEQCEEVRLKPGTSEVEVDLSI 164

Query: 1652 DENGENYDDNADEYLKISKQTLTST-KAQLAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D    N +    + LK +KQTL++T K   A   A+G+L G+KL+L P+   VQLRP   
Sbjct: 165  DLESYNVEKATADKLKYTKQTLSTTWKPPPANGCAVGLLMGDKLHLHPIHAVVQLRPSRH 224

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLEE 1296
            ++  G  + K    + N                    K  T   EQ    +    +K + 
Sbjct: 225  YLDSGGSEKKNVATSNNQN------------------KQTTPSMEQKSDGAPSIEQKSDS 266

Query: 1295 EEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLHG 1116
             + W+ LE +G  + +++   +++VT E   I F M+++ YI  L PG +S T       
Sbjct: 267  NQCWVPLEYHGCKSDISSRYFQQMVTHESSPINFEMSTYDYIATLCPGVSSNTL------ 320

Query: 1115 DHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYAF 936
                  G S+ YL SL ++ R++ +  +    + RF ++  FA   S +E+L+V++  A 
Sbjct: 321  ----AKGPSKRYLLSLPVEKRLQTLLIEGP-PLHRFSAIKHFAPECSDDELLSVLEKQAQ 375

Query: 935  LVQGCWVPAS--IFHYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPK--ERVREVLSY 768
            L++G WVP S  +F   G   L R+Y+L+ F K+  +  ++L  LG  +   R++  +  
Sbjct: 376  LLRGYWVPRSSLLFPTGGIESLARNYILVRFHKSLTVKSDELRRLGGGELGNRMKHFVMQ 435

Query: 767  IA----DQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHG 600
             A    D K +E  W F+E  D++FI+   I+ K+Q E +   E+ +     SI   L G
Sbjct: 436  FALEKFDLKSKENYWKFKELPDESFIKEFPIVVKKQEEIFKILENEVN----SIIGTLGG 491

Query: 599  IQASNISSGESLDQLKRSAVNGTGELNKKANMKEKLQLDGSTMSQESRTSLALALREILS 420
                 + S  +   +  +    T    +  ++ E       TMS E+R +L +AL+++  
Sbjct: 492  --KRKLKSAITNSGVNNALFTSTNSDPRATSLGED-PPRSMTMSSETRHALPIALKKLFQ 548

Query: 419  SH-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNING 243
            +H VC+ + I Q L+ LA  + T   K  +   + AA     P  EL +++ +VA +I+G
Sbjct: 549  THKVCSFQLICQELRGLALAQ-TMLPKGGSKMSVDAANSLDVPQDELKAILGEVACDIHG 607

Query: 242  VYFLKSLGNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVGDPSP-QIYSKIMKE 66
             Y LKS  N   D +R+VV+ ++R  GP   ++K E+ EA + ++G   P   Y K + E
Sbjct: 608  CYVLKSAQN---DPFRDVVIDMLRGSGPNGKLKKAEILEAARRKLGRDVPNNEYIKAVSE 664

Query: 65   LCTSKGGGWVLKTGDGTE 12
            LC SKG  WVLK+GDG++
Sbjct: 665  LCVSKGSFWVLKSGDGSK 682


>ref|XP_004245771.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like [Solanum
            lycopersicum]
          Length = 669

 Score =  281 bits (720), Expect = 5e-73
 Identities = 196/621 (31%), Positives = 319/621 (51%), Gaps = 17/621 (2%)
 Frame = -3

Query: 1829 DRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAMD 1650
            D ++REIDVC  P  DP T++Y+ QYPL+  WR Y LEERCQEVR++P     EVDLA+D
Sbjct: 92   DEIVREIDVCINPSFDPSTQLYVFQYPLKAVWRPYELEERCQEVRLRPSTAEMEVDLAID 151

Query: 1649 ENGENYDDNADEYLKISKQTLTSTKAQL---AAAYAIGILRGNKLNLTPVQEAVQLRPLM 1479
             + +N+D ++     + KQ L+++   L    + YA+G+L G+KL+L PV   VQLRP  
Sbjct: 152  LDSKNFDRDSVHAATVKKQMLSTSWIPLPTCTSGYAVGVLIGDKLHLNPVHAVVQLRPSK 211

Query: 1478 THIAQGLDDIKRSRKAVNMGDDAEKEKPVEAKPALVSVKPETERQEQLRLRSYQHFKKLE 1299
             ++ +   ++K++    N     E E   E +P    V P  ++ +   +         +
Sbjct: 212  RNLKE--SELKKNIITNNDEKSVENEDVKEKRP----VGPSKKQNKSPGIEK-------D 258

Query: 1298 EEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQLH 1119
              E W+ L+ +G  + ++   L+K+   E   +PF+M+   Y++A  PGR + T   +  
Sbjct: 259  IGEHWLHLKYHGARSDISARYLQKMSMEEGSPVPFSMSPVDYLNAFCPGRPTDTDRLK-- 316

Query: 1118 GDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKTYA 939
                    + R+ L  L L++R++ I+  +   + RF++LM  A  +S +E++ V++ YA
Sbjct: 317  --------ILRTRLSQLPLEERVR-IWLLEGPPIHRFDALMHLAPDNSADEIIRVLQIYA 367

Query: 938  FLVQGCWVPASIFHY---RGDLCLVRDYVLLLFSK----NKNIHYEQLEELGLPKERVRE 780
             LVQG WVP S   Y    G   L R++VL  F+K     K++   + E L    +    
Sbjct: 368  QLVQGLWVPKSSLVYGTNSGVEVLARNFVLYEFTKGILIKKSVFGRRPEFL----KAATP 423

Query: 779  VLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHG 600
             L  +A ++P    W  +E  DK F      + +EQ   W                   G
Sbjct: 424  ALKSLAVERPDLNDWKLKEHPDKKFENLYGDVVREQQATW----------------ECLG 467

Query: 599  IQASNISSGESLDQLKRSAVNGTGELN--KKANMKEKLQLDGSTMSQESRTSLALALREI 426
             Q +++  G       ++ +N   ++      +      L  ++MS+E R +L  AL+E+
Sbjct: 468  KQINDVLPGGRTRPTMKNPINRNADITALPSGDKPTSSSLLRTSMSEEIREALPKALQEV 527

Query: 425  LSSH-VCNLKEIRQSLQNLAKVKG--TAGNKKEAVKGMAAAKGATAPLGELTSVIDQVAS 255
              ++ VC+ ++IRQ L+ L   K     G  ++A+   A+     AP  E+ +VI+QVA 
Sbjct: 528  FRTYKVCSFQQIRQGLRKLGVSKSYPPKGAPRKAI--TASVDVFDAPQEEIQAVINQVAV 585

Query: 254  NINGVYFLKSL-GNPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACKLEVG-DPSPQIYS 81
            NI+GVY LKS   NP  D  R +V+ L  A+GP A ++K  V EA KL++  D +   + 
Sbjct: 586  NIHGVYVLKSSPDNPQYDTLRKIVIDLFMAEGPSAKLKKASVTEAAKLQLNRDITNVEFL 645

Query: 80   KIMKELCTSKGGGWVLKTGDG 18
            K+MKELC S+   WVL++GDG
Sbjct: 646  KVMKELCHSEKSAWVLRSGDG 666


>gb|EXB77882.1| DNA-directed RNA polymerase III subunit RPC5 [Morus notabilis]
          Length = 732

 Score =  281 bits (719), Expect = 7e-73
 Identities = 198/585 (33%), Positives = 305/585 (52%), Gaps = 13/585 (2%)
 Frame = -3

Query: 1832 EDRVIREIDVCFRPHIDPDTKVYMVQYPLRPHWRSYGLEERCQEVRVKPKQVRFEVDLAM 1653
            ED V+REIDV F P ID  T++Y++QYPLRP WR Y L+ERC+EVRVKP     E+DL++
Sbjct: 107  EDMVVREIDVFFNPKIDEGTQLYVLQYPLRPSWRPYELDERCEEVRVKPASSEVEMDLSL 166

Query: 1652 DENGENYDDNADEYLKISKQTLTSTKAQ-LAAAYAIGILRGNKLNLTPVQEAVQLRPLMT 1476
            D + +NYD +  + L ++KQTL  +  Q  A  YA+G+L GNKL+L  +   +QLRP + 
Sbjct: 167  DVDSKNYDPDCGDRLNMTKQTLCCSWDQPRATRYAVGVLMGNKLHLNRIHAVMQLRPSLK 226

Query: 1475 HIAQGLDDIKRSRKAVNMGDDAEKEKPVE---AKPALVSVKPETERQEQLRLRSYQHFKK 1305
            H+         S+K  N+  DAE    +E    K A+ S K      +Q++  +    +K
Sbjct: 227  HLISA-----GSKKKNNVKVDAEDTVKLEESSGKKAIGSSK------KQIKQENSSVKQK 275

Query: 1304 LEEEEPWIVLEPYGPDNSVTNELLEKLVTVEDCEIPFNMNSHHYIDALVPGRTSTTSNHQ 1125
            + +EE W+ L+ +G ++  +   L K+   E   + F M+ + Y+++L PG     +  +
Sbjct: 276  IADEEGWVPLKYHGSESESSVRYLRKMAVQESSPLQFTMSPYDYLNSLCPGSCKNGNEPK 335

Query: 1124 LHGDHTGNAGLSRSYLDSLKLQDRIKAIFSQKRIQVFRFESLMRFASGHSTEEVLNVVKT 945
                     G SR  L SL L++RIK++  +    V RF  L  FA   +T+E+L+ ++ 
Sbjct: 336  ---------GPSRRALLSLPLEERIKSLLCEGLAPVHRFSVLKHFAPDCTTKEILDALQN 386

Query: 944  YAFLVQGCWVPASIF-----HYRGDLCLVRDYVLLLFSKNKNIHYEQLEELGLPKERVRE 780
            +A LVQG W P S          G   + RDYVLLLF KN    +  L      K  V +
Sbjct: 387  HALLVQGLWAPKSSLLLGTSKETGAQRIARDYVLLLFWKNPVFSFSSLHFPSSLKTAVNK 446

Query: 779  VLSYIADQKPQEGCWVFREETDKTFIRNNQIIFKEQNEQWLQNEDAIRKAAFSIKQALHG 600
             L+ +  ++P    W F+ +TD +FI+N   + K+Q E W   E  I    F   ++  G
Sbjct: 447  FLNILGVERPSVKDWKFKGQTDISFIKNYPDVVKKQEEVWGDLERDIMN-MFGDGKSGRG 505

Query: 599  IQASNISSGESLDQLKRSAV-NGTGELNKKANMKEKLQLDGSTMSQESRTSL-ALALREI 426
             + ++I S           V  GT E+           + G  +  + R  L +  L ++
Sbjct: 506  PKNTSIPSRPVKPLNSNKGVPKGTSEV-----------VGGKKIPDDIREVLCSKILPKV 554

Query: 425  LSSH-VCNLKEIRQSLQNLAKVKGTAGNKKEAVKGMAAAKGATAPLGELTSVIDQVASNI 249
            +  H VC+L+ + Q L+ LA  K     K +     AAA G  +P GEL  ++D+ A NI
Sbjct: 555  IQEHKVCSLQLMCQGLRELALNKLNL-PKADDRFARAAACGTASP-GELVKLLDETAINI 612

Query: 248  NGVYFLKSLG-NPTIDAYRNVVVKLIRAKGPGAIIRKVEVFEACK 117
            +G+Y LKS   +P  D +RNVV+ L+R  G  A ++K E+F+A K
Sbjct: 613  HGLYVLKSSAEHPQYDPFRNVVIDLLRQNGLAAKLKKAEIFDAAK 657


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