BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00011254
         (590 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65486.1| hypothetical protein VITISV_003680 [Vitis vinifera]   133   3e-29
ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   130   3e-28
emb|CBI33123.3| unnamed protein product [Vitis vinifera]              130   3e-28
ref|XP_002322538.2| transcription initiation factor IIF alpha su...   125   8e-27
ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [A...   124   2e-26
ref|XP_002308775.1| transcription initiation factor IIF alpha su...   122   5e-26
ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutr...   120   2e-25
ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu...   119   6e-25
ref|XP_006467340.1| PREDICTED: transcription initiation factor I...   118   1e-24
ref|XP_006449856.1| hypothetical protein CICLE_v10014841mg [Citr...   118   1e-24
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...   118   1e-24
gb|EAY77905.1| hypothetical protein OsI_32946 [Oryza sativa Indi...   116   5e-24
gb|AAN04997.1| putative transcription initiation factor [Oryza s...   115   7e-24
gb|EEE50676.1| hypothetical protein OsJ_30924 [Oryza sativa Japo...   115   7e-24
gb|AAX95773.1| putative transcription initiation factor [Oryza s...   114   2e-23
ref|XP_006352367.1| PREDICTED: transcription initiation factor I...   113   3e-23
ref|XP_006352364.1| PREDICTED: transcription initiation factor I...   113   3e-23
gb|EMJ12738.1| hypothetical protein PRUPE_ppa003970mg [Prunus pe...   113   4e-23
ref|NP_001064266.1| Os10g0188100 [Oryza sativa Japonica Group] g...   113   4e-23
ref|XP_006586768.1| PREDICTED: transcription initiation factor I...   112   6e-23

>emb|CAN65486.1| hypothetical protein VITISV_003680 [Vitis vinifera]
          Length = 435

 Score =  133 bits (335), Expect = 3e-29
 Identities = 86/198 (43%), Positives = 105/198 (53%), Gaps = 2/198 (1%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                     L
Sbjct: 183 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQD-EEDEDDSNEEEGGLSKSGKEL 241

Query: 408 KQLLGKRSA-NXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTT 235
           K+LLGK +  N              +I LSPVLAPKQK VPKEEP +++P K  P +  +
Sbjct: 242 KKLLGKAAGMNDSDAEDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSAPASARS 301

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQ 55
           T P  +K+ KGKRK   +D K       KK+KT +E             K   + K T  
Sbjct: 302 TPPT-SKSSKGKRKSNGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATAKGTPS 360

Query: 54  VPNKSITTQSVVAVTEDE 1
              K+ +T S   VTEDE
Sbjct: 361 SSVKTGSTSSAGPVTEDE 378


>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Vitis vinifera]
          Length = 534

 Score =  130 bits (326), Expect = 3e-28
 Identities = 86/198 (43%), Positives = 105/198 (53%), Gaps = 2/198 (1%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                     L
Sbjct: 282 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQD-EEDEDDSNEEEGGLSKSGKEL 340

Query: 408 KQLLGKRSA-NXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTT 235
           K+LLGK +  N              +I LSPVLAPKQK VPKEEP +++P K   TA   
Sbjct: 341 KKLLGKAAGMNDSDAEDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMK-SATASAR 399

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQ 55
           ++P  +K+ KGKRK   +D K       KK+KT +E             K   + K T  
Sbjct: 400 STPPTSKSSKGKRKSNGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPS 459

Query: 54  VPNKSITTQSVVAVTEDE 1
              K+ +T S   VTEDE
Sbjct: 460 SSVKTGSTSSAGPVTEDE 477


>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  130 bits (326), Expect = 3e-28
 Identities = 86/198 (43%), Positives = 105/198 (53%), Gaps = 2/198 (1%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                     L
Sbjct: 287 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQD-EEDEDDSNEEEGGLSKSGKEL 345

Query: 408 KQLLGKRSA-NXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTT 235
           K+LLGK +  N              +I LSPVLAPKQK VPKEEP +++P K   TA   
Sbjct: 346 KKLLGKAAGMNDSDAEDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMK-SATASAR 404

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQ 55
           ++P  +K+ KGKRK   +D K       KK+KT +E             K   + K T  
Sbjct: 405 STPPTSKSSKGKRKSNGDDMKTTNGGPPKKVKTENESKSSAKDEGPSPSKVTATPKGTPS 464

Query: 54  VPNKSITTQSVVAVTEDE 1
              K+ +T S   VTEDE
Sbjct: 465 SSVKTGSTSSAGPVTEDE 482


>ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein
           [Populus trichocarpa] gi|550320589|gb|EEF04299.2|
           transcription initiation factor IIF alpha subunit family
           protein [Populus trichocarpa]
          Length = 540

 Score =  125 bits (314), Expect = 8e-27
 Identities = 85/203 (41%), Positives = 106/203 (52%), Gaps = 7/203 (3%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAV  + EERED+ PEVPAPPEIKQD                     L
Sbjct: 288 DWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQD--EDDEDEENEEGGLSKSGKEL 345

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK--VPKEEPWESTPTKEKPTAVTT 235
           K+LLGK +                D  +SPVLAPKQK  VPKEE  + +P K  P+    
Sbjct: 346 KKLLGKANGLNESDVEDDDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSGSAK 405

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEK---TNNSTKP 64
            +P+ +K+ KGKRK   ED K +    +KK+KT +E     V  AVKEE    T  +  P
Sbjct: 406 GTPSTSKSAKGKRKLNGEDAKSSNGAPVKKVKTENE-----VKPAVKEESSPATKGTATP 460

Query: 63  TSQVPNKSI--TTQSVVAVTEDE 1
               P+     T+ S   VTE+E
Sbjct: 461 KVTPPSSKTGSTSGSTGPVTEEE 483


>ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [Amborella trichopoda]
           gi|548861791|gb|ERN19162.1| hypothetical protein
           AMTR_s00061p00167160 [Amborella trichopoda]
          Length = 558

 Score =  124 bits (311), Expect = 2e-26
 Identities = 82/204 (40%), Positives = 103/204 (50%), Gaps = 8/204 (3%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED  PEVPAPPEIKQD                     L
Sbjct: 299 DWEHEEIFTDDDEAVGNDPEEREDFAPEVPAPPEIKQDDEDEDEGNEDEEGGLSKSGREL 358

Query: 408 KQLLGKRSA--NXXXXXXXXXXXXXXDIALSPVLAPKQKVPKEEPWESTPTKEKPTAVTT 235
           K+LLG+                    D+  S VLAPKQK  KEEP +++PTK   +    
Sbjct: 359 KKLLGRAGGLNESDGDDDDDDDDLDDDMGTSSVLAPKQKEVKEEPVDNSPTKTATSGSNR 418

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQ 55
            +P+ +K+ K KRK  ++D KP AS   KK K +  DSK       +      S  P  +
Sbjct: 419 GTPSTSKSTKAKRKSGSDDAKPAASAPSKKPK-IENDSKPATTVKDEPASAQRSNTPV-K 476

Query: 54  VPNKSIT------TQSVVAVTEDE 1
           +P+ S T        + V VTEDE
Sbjct: 477 LPSSSGTKPAGSPVAAAVPVTEDE 500


>ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein
           [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
           transcription initiation factor IIF alpha subunit family
           protein [Populus trichocarpa]
          Length = 541

 Score =  122 bits (307), Expect = 5e-26
 Identities = 83/208 (39%), Positives = 107/208 (51%), Gaps = 16/208 (7%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAV  + EERED+ PEVPAPPEIKQD                     L
Sbjct: 288 DWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQD--EEDEDEENEEGGLSKSGKEL 345

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK--VPKEEPWESTPTKEKPTAVTT 235
           K+LLGK +                D  +SPVLAPKQK  VPKEEP +++P K  P     
Sbjct: 346 KKLLGKANGLNESDAEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAK 405

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEK---------- 85
            +P+ +K+ KGKRK   +D K +    +KK+KT +E     V   VKEE           
Sbjct: 406 GTPSTSKSAKGKRKLNADDAKTSNGAPVKKVKTENE-----VKPTVKEESSPATKGTATP 460

Query: 84  ----TNNSTKPTSQVPNKSITTQSVVAV 13
               +++ T PTS  P   +T + + AV
Sbjct: 461 KIMPSSSKTGPTSG-PTGPVTEEEIRAV 487


>ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum]
           gi|557097757|gb|ESQ38193.1| hypothetical protein
           EUTSA_v10028564mg [Eutrema salsugineum]
          Length = 542

 Score =  120 bits (302), Expect = 2e-25
 Identities = 86/208 (41%), Positives = 109/208 (52%), Gaps = 12/208 (5%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEERED-IGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXX 412
           DWEHEE+FTDDDEAVGN+ EERED + PE+PAPPEIKQD                     
Sbjct: 286 DWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQD--DDDEENEEEEGGLSKSGKE 343

Query: 411 LKQLLGKRSA-NXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVT 238
           LK+LLGK +  N              +    P+   KQK   KEEP ESTP K  P+  +
Sbjct: 344 LKKLLGKSNGLNESDEEDDDDSDDDEETNFGPITNSKQKDATKEEPVESTPPKPAPSVSS 403

Query: 237 TTSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTS 58
             +P+  K  KGKRK  + D K  +S   KK+KT SE       ++VKEEK+N+ +K  S
Sbjct: 404 RGTPS-AKPSKGKRKLNDGDAKKPSSSVQKKVKTESESKS----SSVKEEKSNSISK--S 456

Query: 57  QVPNKSITTQSVVA---------VTEDE 1
             P K++  +S  A         VTEDE
Sbjct: 457 NAPTKAVKPESTSAPAASAATGPVTEDE 484


>ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa]
           gi|550335193|gb|ERP58675.1| hypothetical protein
           POPTR_0006s01070g [Populus trichocarpa]
          Length = 536

 Score =  119 bits (298), Expect = 6e-25
 Identities = 82/198 (41%), Positives = 106/198 (53%), Gaps = 6/198 (3%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAV  + EERED+ PEVPAPPEIKQD                     L
Sbjct: 288 DWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQD--EEDEDEENEEGGLSKSGKEL 345

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK--VPKEEPWESTPTKEKPTAVTT 235
           K+LLGK +                D  +SPVLAPKQK  VPKEEP +++P K  P     
Sbjct: 346 KKLLGKANGLNESDAEDDDDDDDMDDDISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAK 405

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKK-IK-TVSEDSK--VHVLAAVKEEKTNNSTK 67
            +P+ +K+ KGKRK   +D K +    +KK +K TV E+S       A  K   +++ T 
Sbjct: 406 GTPSTSKSAKGKRKLNADDAKTSNGAPVKKEVKPTVKEESSPATKGTATPKIMPSSSKTG 465

Query: 66  PTSQVPNKSITTQSVVAV 13
           PTS  P   +T + + AV
Sbjct: 466 PTSG-PTGPVTEEEIRAV 482


>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Citrus sinensis]
           gi|568825955|ref|XP_006467341.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Citrus sinensis]
          Length = 538

 Score =  118 bits (296), Expect = 1e-24
 Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 11/203 (5%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                      
Sbjct: 285 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKEL--- 341

Query: 408 KQLLGKRSA---NXXXXXXXXXXXXXXDIALSPVLAPKQK--VPKEEPWESTPTKEKPTA 244
           K+LLG+ +    +              ++  SP+LAPK K    KEEP +++P K  P+ 
Sbjct: 342 KKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSG 401

Query: 243 VTTTSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSE------DSKVHVLAAVKEEKT 82
               +P+ +K+ KGKRK   +D +  +   LKK+KT +E      D  V    +    K 
Sbjct: 402 SGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKG 461

Query: 81  NNSTKPTSQVPNKSITTQSVVAV 13
            +S++  S   +  +T + + AV
Sbjct: 462 ASSSRTGSTSASGPVTAEEIRAV 484


>ref|XP_006449856.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
           gi|557552467|gb|ESR63096.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
          Length = 420

 Score =  118 bits (296), Expect = 1e-24
 Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 11/203 (5%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                      
Sbjct: 167 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKEL--- 223

Query: 408 KQLLGKRSA---NXXXXXXXXXXXXXXDIALSPVLAPKQK--VPKEEPWESTPTKEKPTA 244
           K+LLG+ +    +              ++  SP+LAPK K    KEEP +++P K  P+ 
Sbjct: 224 KKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSG 283

Query: 243 VTTTSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSE------DSKVHVLAAVKEEKT 82
               +P+ +K+ KGKRK   +D +  +   LKK+KT +E      D  V    +    K 
Sbjct: 284 SGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKG 343

Query: 81  NNSTKPTSQVPNKSITTQSVVAV 13
            +S++  S   +  +T + + AV
Sbjct: 344 ASSSRTGSTSASGPVTAEEIRAV 366


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
           gi|567915083|ref|XP_006449855.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
           gi|557552465|gb|ESR63094.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
           gi|557552466|gb|ESR63095.1| hypothetical protein
           CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score =  118 bits (296), Expect = 1e-24
 Identities = 73/203 (35%), Positives = 104/203 (51%), Gaps = 11/203 (5%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                      
Sbjct: 285 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEDEDEEEEGGLSKSGKEL--- 341

Query: 408 KQLLGKRSA---NXXXXXXXXXXXXXXDIALSPVLAPKQK--VPKEEPWESTPTKEKPTA 244
           K+LLG+ +    +              ++  SP+LAPK K    KEEP +++P K  P+ 
Sbjct: 342 KKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPKKEEPADNSPAKPAPSG 401

Query: 243 VTTTSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSE------DSKVHVLAAVKEEKT 82
               +P+ +K+ KGKRK   +D +  +   LKK+KT +E      D  V    +    K 
Sbjct: 402 SGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTENETKSSARDENVSASKSSAPAKG 461

Query: 81  NNSTKPTSQVPNKSITTQSVVAV 13
            +S++  S   +  +T + + AV
Sbjct: 462 ASSSRTGSTSASGPVTAEEIRAV 484


>gb|EAY77905.1| hypothetical protein OsI_32946 [Oryza sativa Indica Group]
          Length = 532

 Score =  116 bits (290), Expect = 5e-24
 Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE FTDDDEAV  + EER D+ PE+PAPPEIKQD                     L
Sbjct: 287 DWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQD-----DEENEEEGGLSKSGKEL 341

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTTT 232
           K+LLGK +                +   SPVLAPKQK  PK+EP +++P K  P+     
Sbjct: 342 KKLLGKAAGLNESDADEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARG 401

Query: 231 SPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQV 52
           +P  +K+ + ++    +D+K +   + KK K V  D+K     +V +++T +S+KP S+ 
Sbjct: 402 TPPASKSKQKRKSGGGDDSKASGGAASKKAK-VESDTK----TSVAKDETPSSSKPASKA 456

Query: 51  PNKSITTQSVVAVTEDE 1
              S T+ +V  VTEDE
Sbjct: 457 TAASKTSANVSPVTEDE 473


>gb|AAN04997.1| putative transcription initiation factor [Oryza sativa Japonica
           Group] gi|31430629|gb|AAP52517.1| mutant TFIIF-alpha,
           putative, expressed [Oryza sativa Japonica Group]
          Length = 532

 Score =  115 bits (289), Expect = 7e-24
 Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE FTDDDEAV  + EER D+ PE+PAPPEIKQD                     L
Sbjct: 287 DWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQD-----DEENEEEGGLSKSGKEL 341

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTTT 232
           K+LLGK +                +   SPVLAPKQK  PK+EP +++P K  P+     
Sbjct: 342 KKLLGKAAGLNESDADEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARG 401

Query: 231 SPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQV 52
           +P  +K+ + ++    +D+K +   + KK K V  D+K     +V +++T +S+KP S+ 
Sbjct: 402 TPPASKSKQKRKSGGGDDSKASGGAASKKAK-VESDTK----PSVAKDETPSSSKPASKA 456

Query: 51  PNKSITTQSVVAVTEDE 1
              S T+ +V  VTEDE
Sbjct: 457 TAASKTSANVSPVTEDE 473


>gb|EEE50676.1| hypothetical protein OsJ_30924 [Oryza sativa Japonica Group]
          Length = 519

 Score =  115 bits (289), Expect = 7e-24
 Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE FTDDDEAV  + EER D+ PE+PAPPEIKQD                     L
Sbjct: 274 DWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQD-----DEENEEEGGLSKSGKEL 328

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTTT 232
           K+LLGK +                +   SPVLAPKQK  PK+EP +++P K  P+     
Sbjct: 329 KKLLGKAAGLNESDADEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARG 388

Query: 231 SPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQV 52
           +P  +K+ + ++    +D+K +   + KK K V  D+K     +V +++T +S+KP S+ 
Sbjct: 389 TPPASKSKQKRKSGGGDDSKASGGAASKKAK-VESDTK----PSVAKDETPSSSKPASKA 443

Query: 51  PNKSITTQSVVAVTEDE 1
              S T+ +V  VTEDE
Sbjct: 444 TAASKTSANVSPVTEDE 460


>gb|AAX95773.1| putative transcription initiation factor [Oryza sativa Japonica
           Group] gi|78708004|gb|ABB46979.1| mutant TFIIF-alpha,
           putative, expressed [Oryza sativa Japonica Group]
          Length = 531

 Score =  114 bits (285), Expect = 2e-23
 Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE FTDDDEAV  + EER D+ PE+PAPPEIKQD                     L
Sbjct: 287 DWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQD-----DEENEEEGGLSKSGKEL 341

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTTT 232
           K+LLGK +A               +   SPVLAPKQK  PK+EP +++P K  P+     
Sbjct: 342 KKLLGK-AAGLNESDADEDDEDDDEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARG 400

Query: 231 SPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQV 52
           +P  +K+ + ++    +D+K +   + KK K V  D+K     +V +++T +S+KP S+ 
Sbjct: 401 TPPASKSKQKRKSGGGDDSKASGGAASKKAK-VESDTK----PSVAKDETPSSSKPASKA 455

Query: 51  PNKSITTQSVVAVTEDE 1
              S T+ +V  VTEDE
Sbjct: 456 TAASKTSANVSPVTEDE 472


>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X4 [Solanum tuberosum]
          Length = 535

 Score =  113 bits (283), Expect = 3e-23
 Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 8/204 (3%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PE+PAPPEIKQD                     L
Sbjct: 284 DWEHEEIFTDDDEAVGNDPEEREDLAPEIPAPPEIKQD-EDDEEEGEEEGGGLSKSGKEL 342

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWE-STPTKEKPTAVTT 235
           K+LLGK +                +  +SPVLAPK K  PKEEP E ++P K   +    
Sbjct: 343 KKLLGKANGLNESDAEDDDDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNR 402

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQ 55
            +P  +K+ K KRK   +++KP +   LKK+KT ++       A   +++T +S K  S 
Sbjct: 403 GTPT-SKSAKTKRKANGDESKPTSGAPLKKVKTETD-------AKPGKDETPSSAK-NSA 453

Query: 54  VP------NKSITTQSVVAVTEDE 1
           +P      +K+  + +   VTEDE
Sbjct: 454 LPKGASSSSKTAPSPATGPVTEDE 477


>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           isoform X1 [Solanum tuberosum]
           gi|565371548|ref|XP_006352365.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X2 [Solanum tuberosum]
           gi|565371550|ref|XP_006352366.1| PREDICTED:
           transcription initiation factor IIF subunit alpha-like
           isoform X3 [Solanum tuberosum]
          Length = 538

 Score =  113 bits (283), Expect = 3e-23
 Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 8/204 (3%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PE+PAPPEIKQD                     L
Sbjct: 284 DWEHEEIFTDDDEAVGNDPEEREDLAPEIPAPPEIKQD-EDDEEEGEEEGGGLSKSGKEL 342

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWE-STPTKEKPTAVTT 235
           K+LLGK +                +  +SPVLAPK K  PKEEP E ++P K   +    
Sbjct: 343 KKLLGKANGLNESDAEDDDDDDDTEEDISPVLAPKPKEAPKEEPVETNSPLKPAASGSNR 402

Query: 234 TSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQ 55
            +P  +K+ K KRK   +++KP +   LKK+KT ++       A   +++T +S K  S 
Sbjct: 403 GTPT-SKSAKTKRKANGDESKPTSGAPLKKVKTETD-------AKPGKDETPSSAK-NSA 453

Query: 54  VP------NKSITTQSVVAVTEDE 1
           +P      +K+  + +   VTEDE
Sbjct: 454 LPKGASSSSKTAPSPATGPVTEDE 477


>gb|EMJ12738.1| hypothetical protein PRUPE_ppa003970mg [Prunus persica]
          Length = 537

 Score =  113 bits (282), Expect = 4e-23
 Identities = 77/203 (37%), Positives = 102/203 (50%), Gaps = 7/203 (3%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGNN EERED+  EVPAPPEIKQD                      
Sbjct: 284 DWEHEEIFTDDDEAVGNNPEEREDLELEVPAPPEIKQDDEDEDEDDKEGGLSKSGKEL-- 341

Query: 408 KQLLGKRSA---NXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAV 241
           K+LLG+      +              DI      APKQK   KEEP +++P+K  P+  
Sbjct: 342 KKLLGRTGGLDDSDAEDDDDDDDDMDDDIGFPQAAAPKQKDASKEEPSDNSPSKPVPSGS 401

Query: 240 TTTSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEE--KTNNSTK 67
              +P+  K+ KGKRK   +D K + S   KK+K+ +E        + KEE    + S+ 
Sbjct: 402 ARGTPSTAKSAKGKRKLSADDAKTSNSAPPKKVKSENEQK-----VSTKEEPASASKSST 456

Query: 66  PTSQVPNKSI-TTQSVVAVTEDE 1
           P+   P+  +  T S   VTE+E
Sbjct: 457 PSKGTPSVKVEPTSSSGPVTEEE 479


>ref|NP_001064266.1| Os10g0188100 [Oryza sativa Japonica Group]
           gi|62733662|gb|AAX95774.1| putative transcription
           initiation factor [Oryza sativa Japonica Group]
           gi|78708005|gb|ABB46980.1| mutant TFIIF-alpha, putative,
           expressed [Oryza sativa Japonica Group]
           gi|113638875|dbj|BAF26180.1| Os10g0188100 [Oryza sativa
           Japonica Group] gi|215713568|dbj|BAG94705.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215769198|dbj|BAH01427.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 529

 Score =  113 bits (282), Expect = 4e-23
 Identities = 74/197 (37%), Positives = 105/197 (53%), Gaps = 1/197 (0%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE FTDDDEAV  + EER D+ PE+PAPPEIKQD                     L
Sbjct: 287 DWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQD-----DEENEEEGGLSKSGKEL 341

Query: 408 KQLLGKRSANXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAVTTT 232
           K+LLGK +                +   SPVLAPKQK  PK+EP +++P K  P+     
Sbjct: 342 KKLLGKAAGLNESDADEDDEDDDQEDESSPVLAPKQKDQPKDEPVDNSPAKPTPSGHARG 401

Query: 231 SPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPTSQV 52
           +P  +K+ + ++    +D+K +   + KK K    D+K     +V +++T +S+KP S+ 
Sbjct: 402 TPPASKSKQKRKSGGGDDSKASGGAASKKAK----DTK----PSVAKDETPSSSKPASKA 453

Query: 51  PNKSITTQSVVAVTEDE 1
              S T+ +V  VTEDE
Sbjct: 454 TAASKTSANVSPVTEDE 470


>ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
           [Glycine max]
          Length = 536

 Score =  112 bits (281), Expect = 6e-23
 Identities = 81/200 (40%), Positives = 107/200 (53%), Gaps = 4/200 (2%)
 Frame = -3

Query: 588 DWEHEEVFTDDDEAVGNNAEEREDIGPEVPAPPEIKQDXXXXXXXXXXXXXXXXXXXXXL 409
           DWEHEE+FTDDDEAVGN+ EERED+ PEVPAPPEIKQD                     L
Sbjct: 284 DWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQD-EEEEDEDNEEGEGLSKSGKEL 342

Query: 408 KQLLGKRSA---NXXXXXXXXXXXXXXDIALSPVLAPKQK-VPKEEPWESTPTKEKPTAV 241
           K+LLGK S    +              D+ + PV+A KQK   KEEP +++P+K   T  
Sbjct: 343 KKLLGKASGLNESDAEDDDDDDDDVDDDVGVPPVIATKQKDALKEEPIDNSPSKPTATGP 402

Query: 240 TTTSPNGTKTVKGKRKFENEDTKPNASLSLKKIKTVSEDSKVHVLAAVKEEKTNNSTKPT 61
              +P+ +K+ KGKRK  NE+TKP+ + + KK   +S  +K    +A K       T P 
Sbjct: 403 ARGTPS-SKSSKGKRKL-NEETKPSNTATPKKEPKLS--AKDVNGSASKSSAPPKGTPPL 458

Query: 60  SQVPNKSITTQSVVAVTEDE 1
           S     S TT +   V+E+E
Sbjct: 459 SSKGGSSTTTTASGPVSEEE 478