BLASTX nr result
ID: Ephedra27_contig00010867
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00010867
(647 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_002519985.1| RNA polymerase alpha chain (chloroplast) [Ep... 218 2e-54
ref|YP_002519984.1| cytochrome b6/f complex subunit IV (chloropl... 144 2e-32
dbj|BAN16911.1| cytochrome b6/f complex subunit IV (chloroplast)... 141 2e-31
ref|YP_002519754.1| cytochrome b6 [Gnetum parvifolium] gi|512721... 140 2e-31
dbj|BAF64864.1| cytochrome b6/f complex subunit IV [Gnetum parvi... 140 2e-31
ref|YP_001876607.1| cytochrome b6/f complex subunit IV [Welwitsc... 133 4e-29
gb|AGW04696.1| cytochrome b6/f complex subunit IV [Matelea biflora] 132 1e-28
ref|YP_008081837.1| cytochrome b6-f complex subunit IV (chloropl... 132 1e-28
ref|YP_007889973.1| cytochrome b6/f complex subunit IV (chloropl... 132 1e-28
gb|AHA13041.1| cytochrome b6/f complex subunit IV [Costus pulver... 131 2e-28
gb|AFM54183.1| PetD (chloroplast) [Zamia furfuracea] 131 2e-28
gb|AFM54182.1| PetD (chloroplast) [Ceratozamia hildae] 131 2e-28
ref|YP_358612.1| cytochrome b6/f complex subunit IV [Phalaenopsi... 131 2e-28
dbj|BAL03657.1| cytochrome b6/f complex subunit IV (chloroplast)... 131 2e-28
ref|YP_004891520.1| cytochrome b6/f complex subunit IV (chloropl... 131 2e-28
ref|YP_740148.1| cytochrome b6/f complex subunit IV [Daucus caro... 131 2e-28
ref|YP_008438985.1| cytochrome b6/f complex subunit IV [Medicago... 130 3e-28
ref|YP_008081681.1| cytochrome b6-f complex subunit IV (chloropl... 130 3e-28
ref|YP_008965232.1| cytochrome b6/f complex subunit IV (chloropl... 130 3e-28
ref|YP_007476078.1| cytochrome b6/f complex subunit IV [Dasypogo... 130 3e-28
>ref|YP_002519985.1| RNA polymerase alpha chain (chloroplast) [Ephedra equisetina]
gi|220983586|dbj|BAH11353.1| RNA polymerase alpha chain
(chloroplast) [Ephedra equisetina]
Length = 258
Score = 218 bits (554), Expect = 2e-54
Identities = 105/105 (100%), Positives = 105/105 (100%)
Frame = +1
Query: 1 EKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTP 180
EKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTP
Sbjct: 153 EKKKRYTIENMKQPKDIFFPIDGVSLPVQNVNFSIHSYKSSDNIQEMLIFEIWTNGGLTP 212
Query: 181 RETIYEACWSLLDLIIPLLCVEQNIKNSQKKPNPLSLVTKDRNKK 315
RETIYEACWSLLDLIIPLLCVEQNIKNSQKKPNPLSLVTKDRNKK
Sbjct: 213 RETIYEACWSLLDLIIPLLCVEQNIKNSQKKPNPLSLVTKDRNKK 257
>ref|YP_002519984.1| cytochrome b6/f complex subunit IV (chloroplast) [Ephedra
equisetina] gi|220983585|dbj|BAH11352.1| cytochrome b6/f
complex subunit IV (chloroplast) [Ephedra equisetina]
Length = 161
Score = 144 bits (363), Expect = 2e-32
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA
Sbjct: 90 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 149
Query: 467 LPIEESLTLGLF 432
LPIEESLTLGLF
Sbjct: 150 LPIEESLTLGLF 161
>dbj|BAN16911.1| cytochrome b6/f complex subunit IV (chloroplast) [Gnetum ula]
Length = 161
Score = 141 bits (355), Expect = 2e-31
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKFFGVLLM+SVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTA+SLWLGIGA
Sbjct: 90 RTVPNKFFGVLLMVSVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVSLWLGIGAT 149
Query: 467 LPIEESLTLGLF 432
LPIEESLTLGLF
Sbjct: 150 LPIEESLTLGLF 161
>ref|YP_002519754.1| cytochrome b6 [Gnetum parvifolium] gi|512721604|ref|YP_008082223.1|
cytochrome b6 (chloroplast) [Gnetum montanum]
gi|220983496|dbj|BAH11264.1| cytochrome b6 (chloroplast)
[Gnetum parvifolium] gi|490345049|gb|AGL11069.1|
cytochrome b6 (chloroplast) [Gnetum montanum]
Length = 160
Score = 140 bits (354), Expect = 2e-31
Identities = 68/72 (94%), Positives = 71/72 (98%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKFFGVLLM+SVP+GLLTVPFLENVNQFQNPFRRPVATTVFLIGTA+SLWLGIGA
Sbjct: 89 RTVPNKFFGVLLMVSVPIGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVSLWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPIEESLTLGLF
Sbjct: 149 LPIEESLTLGLF 160
>dbj|BAF64864.1| cytochrome b6/f complex subunit IV [Gnetum parvifolium]
Length = 139
Score = 140 bits (354), Expect = 2e-31
Identities = 68/72 (94%), Positives = 71/72 (98%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKFFGVLLM+SVP+GLLTVPFLENVNQFQNPFRRPVATTVFLIGTA+SLWLGIGA
Sbjct: 68 RTVPNKFFGVLLMVSVPIGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVSLWLGIGAT 127
Query: 467 LPIEESLTLGLF 432
LPIEESLTLGLF
Sbjct: 128 LPIEESLTLGLF 139
>ref|YP_001876607.1| cytochrome b6/f complex subunit IV [Welwitschia mirabilis]
gi|254782174|sp|B2Y1Z0.1|PETD_WELMI RecName:
Full=Cytochrome b6-f complex subunit 4; AltName: Full=17
kDa polypeptide gi|163311662|gb|ABY26820.1| cytochrome
b6/f complex subunit IV [Welwitschia mirabilis]
gi|220983429|dbj|BAH11198.1| cytochrome b6/f complex
subunit IV (chloroplast) [Welwitschia mirabilis]
Length = 160
Score = 133 bits (335), Expect = 4e-29
Identities = 65/72 (90%), Positives = 67/72 (93%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKFFGVLLM SVP GLLTVPFLENVNQFQNPFRRPVAT+VFLIGT +SLWLG GA
Sbjct: 89 RTVPNKFFGVLLMTSVPFGLLTVPFLENVNQFQNPFRRPVATSVFLIGTVISLWLGFGAV 148
Query: 467 LPIEESLTLGLF 432
LPIEESLTLGLF
Sbjct: 149 LPIEESLTLGLF 160
>gb|AGW04696.1| cytochrome b6/f complex subunit IV [Matelea biflora]
Length = 160
Score = 132 bits (331), Expect = 1e-28
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKF GVLLM+SVP GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKFLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI++SLTLGLF
Sbjct: 149 LPIDKSLTLGLF 160
>ref|YP_008081837.1| cytochrome b6-f complex subunit IV (chloroplast) [Cymbidium
tracyanum] gi|520850508|ref|YP_008081603.1| cytochrome
b6-f complex subunit IV (chloroplast) [Cymbidium
aloifolium] gi|482662029|gb|AGK25258.1| cytochrome b6-f
complex subunit IV (chloroplast) [Cymbidium aloifolium]
gi|482662424|gb|AGK25648.1| cytochrome b6-f complex
subunit IV (chloroplast) [Cymbidium tracyanum]
Length = 162
Score = 132 bits (331), Expect = 1e-28
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVP+GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPIGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPIE+SLTLGLF
Sbjct: 149 LPIEKSLTLGLF 160
>ref|YP_007889973.1| cytochrome b6/f complex subunit IV (chloroplast) [Pachycladon
cheesemanii] gi|392934185|gb|AFM92311.1| cytochrome b6/f
complex subunit IV (chloroplast) [Pachycladon
cheesemanii]
Length = 160
Score = 132 bits (331), Expect = 1e-28
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNKF GVLLM+SVP GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKFLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI++SLTLGLF
Sbjct: 149 LPIDKSLTLGLF 160
>gb|AHA13041.1| cytochrome b6/f complex subunit IV [Costus pulverulentus]
Length = 160
Score = 131 bits (329), Expect = 2e-28
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVP+GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPMGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPIE+SLTLGLF
Sbjct: 149 LPIEKSLTLGLF 160
>gb|AFM54183.1| PetD (chloroplast) [Zamia furfuracea]
Length = 168
Score = 131 bits (329), Expect = 2e-28
Identities = 64/72 (88%), Positives = 67/72 (93%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM SVP GLLTVPFLENVNQFQNPFRRPVATTVFLIGTA++LWLGIGAA
Sbjct: 89 RTVPNKLLGVLLMASVPAGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVALWLGIGAA 148
Query: 467 LPIEESLTLGLF 432
LPI+ES TLGLF
Sbjct: 149 LPIDESFTLGLF 160
>gb|AFM54182.1| PetD (chloroplast) [Ceratozamia hildae]
Length = 189
Score = 131 bits (329), Expect = 2e-28
Identities = 64/72 (88%), Positives = 67/72 (93%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM SVP GLLTVPFLENVNQFQNPFRRPVATTVFLIGTA++LWLGIGAA
Sbjct: 89 RTVPNKLLGVLLMASVPAGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVALWLGIGAA 148
Query: 467 LPIEESLTLGLF 432
LPI+ES TLGLF
Sbjct: 149 LPIDESFTLGLF 160
>ref|YP_358612.1| cytochrome b6/f complex subunit IV [Phalaenopsis aphrodite subsp.
formosana] gi|385153462|ref|YP_006073296.1| cytochrome
b6/f complex subunit IV (chloroplast) [Phalaenopsis
equestris] gi|85542134|sp|Q3BAK6.1|PETD_PHAAO RecName:
Full=Cytochrome b6-f complex subunit 4; AltName: Full=17
kDa polypeptide gi|58802810|gb|AAW82530.1| cytochrome
b6/f complex subunit IV [Phalaenopsis aphrodite subsp.
formosana] gi|329668827|gb|AEB96274.1| cytochrome b6/f
complex subunit IV (chloroplast) [Phalaenopsis
equestris]
Length = 163
Score = 131 bits (329), Expect = 2e-28
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVP+GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPLGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPIE+SLTLGLF
Sbjct: 149 LPIEKSLTLGLF 160
>dbj|BAL03657.1| cytochrome b6/f complex subunit IV (chloroplast) [Bowenia
serrulata]
Length = 168
Score = 131 bits (329), Expect = 2e-28
Identities = 64/72 (88%), Positives = 67/72 (93%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM SVP GLLTVPFLENVNQFQNPFRRPVATTVFLIGTA++LWLGIGAA
Sbjct: 89 RTVPNKLLGVLLMASVPAGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVALWLGIGAA 148
Query: 467 LPIEESLTLGLF 432
LPI+ES TLGLF
Sbjct: 149 LPIDESFTLGLF 160
>ref|YP_004891520.1| cytochrome b6/f complex subunit IV (chloroplast) [Taiwania
cryptomerioides] gi|512721515|ref|YP_008082136.1|
cytochrome b6/f complex subunit IV (chloroplast)
[Cunninghamia lanceolata]
gi|512721822|ref|YP_008082437.1| cytochrome b6/f complex
subunit IV (chloroplast) [Taiwania flousiana]
gi|347977422|dbj|BAK86853.1| cytochrome b6/f complex
subunit IV (chloroplast) [Taiwania cryptomerioides]
gi|490344953|gb|AGL10982.1| cytochrome b6/f complex
subunit IV (chloroplast) [Cunninghamia lanceolata]
gi|490345295|gb|AGL11283.1| cytochrome b6/f complex
subunit IV (chloroplast) [Taiwania flousiana]
Length = 165
Score = 131 bits (329), Expect = 2e-28
Identities = 64/72 (88%), Positives = 67/72 (93%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM SVP GLLTVPFLENVNQFQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMASVPAGLLTVPFLENVNQFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI+ESLTLGLF
Sbjct: 149 LPIDESLTLGLF 160
>ref|YP_740148.1| cytochrome b6/f complex subunit IV [Daucus carota]
gi|122221304|sp|Q0G9T1.1|PETD_DAUCA RecName:
Full=Cytochrome b6-f complex subunit 4; AltName: Full=17
kDa polypeptide gi|113200938|gb|ABI32454.1| cytochrome
b6/f complex subunit IV [Daucus carota]
Length = 160
Score = 131 bits (329), Expect = 2e-28
Identities = 63/72 (87%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVPVGLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPVGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI++SLTLGLF
Sbjct: 149 LPIDKSLTLGLF 160
>ref|YP_008438985.1| cytochrome b6/f complex subunit IV [Medicago truncatula]
gi|533310016|ref|YP_008439061.1| cytochrome b6/f complex
subunit IV [Medicago truncatula]
gi|552541227|ref|YP_008439137.1| cytochrome b6/f complex
subunit IV [Medicago truncatula]
gi|404332312|gb|AFR59944.1| cytochrome b6/f complex
subunit IV [Medicago truncatula]
gi|404332389|gb|AFR60020.1| cytochrome b6/f complex
subunit IV [Medicago truncatula]
gi|404332466|gb|AFR60096.1| cytochrome b6/f complex
subunit IV [Medicago truncatula]
Length = 160
Score = 130 bits (328), Expect = 3e-28
Identities = 63/72 (87%), Positives = 68/72 (94%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVPVGLLTVPFLENVN+FQNPFRRPVATTVFLIGT ++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPVGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPIE+SLTLGLF
Sbjct: 149 LPIEKSLTLGLF 160
>ref|YP_008081681.1| cytochrome b6-f complex subunit IV (chloroplast) [Cymbidium
sinense] gi|512721419|ref|YP_008081759.1| cytochrome
b6-f complex subunit IV (chloroplast) [Cymbidium
tortisepalum] gi|482662108|gb|AGK25336.1| cytochrome
b6-f complex subunit IV (chloroplast) [Cymbidium
sinense] gi|482662187|gb|AGK25414.1| cytochrome b6-f
complex subunit IV (chloroplast) [Cymbidium
tortisepalum] gi|482662266|gb|AGK25492.1| cytochrome
b6-f complex subunit IV (chloroplast) [Cymbidium
tortisepalum] gi|482662503|gb|AGK25726.1| cytochrome
b6-f complex subunit IV (chloroplast) [Cymbidium
tortisepalum]
Length = 162
Score = 130 bits (328), Expect = 3e-28
Identities = 62/72 (86%), Positives = 69/72 (95%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVP+GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPIGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI++SLTLGLF
Sbjct: 149 LPIDKSLTLGLF 160
>ref|YP_008965232.1| cytochrome b6/f complex subunit IV (chloroplast) [Calocedrus
formosana] gi|482841004|dbj|BAN16964.1| cytochrome b6/f
complex subunit IV (chloroplast) [Calocedrus formosana]
gi|563317818|dbj|BAO19916.1| cytochrome b6/f complex
subunit IV (chloroplast) [Calocedrus formosana]
Length = 165
Score = 130 bits (328), Expect = 3e-28
Identities = 63/72 (87%), Positives = 67/72 (93%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM SVP GLLT+PFLENVNQFQNPFRRPVATTVFLIGTA++LWLGIGA
Sbjct: 89 RTVPNKLLGVLLMASVPAGLLTIPFLENVNQFQNPFRRPVATTVFLIGTAVALWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI+ESLTLGLF
Sbjct: 149 LPIDESLTLGLF 160
>ref|YP_007476078.1| cytochrome b6/f complex subunit IV [Dasypogon bromeliifolius]
gi|449326561|gb|AGE93142.1| cytochrome b6/f complex
subunit IV [Dasypogon bromeliifolius]
gi|449326648|gb|AGE93228.1| cytochrome b6/f complex
subunit IV [Calectasia narragara]
Length = 160
Score = 130 bits (328), Expect = 3e-28
Identities = 63/72 (87%), Positives = 68/72 (94%)
Frame = -1
Query: 647 RTVPNKFFGVLLMISVPVGLLTVPFLENVNQFQNPFRRPVATTVFLIGTALSLWLGIGAA 468
RTVPNK GVLLM+SVP GLLTVPFLENVN+FQNPFRRPVATTVFLIGTA+SLWLGIGA
Sbjct: 89 RTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVSLWLGIGAT 148
Query: 467 LPIEESLTLGLF 432
LPI++SLTLGLF
Sbjct: 149 LPIDKSLTLGLF 160