BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00010453
         (1784 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262798.2| PREDICTED: transcription initiation factor I...   436   e-119
emb|CBI33123.3| unnamed protein product [Vitis vinifera]              436   e-119
ref|XP_006467340.1| PREDICTED: transcription initiation factor I...   431   e-118
ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citr...   431   e-118
ref|XP_004250258.1| PREDICTED: transcription initiation factor I...   417   e-114
ref|XP_006352367.1| PREDICTED: transcription initiation factor I...   414   e-113
ref|XP_006352364.1| PREDICTED: transcription initiation factor I...   414   e-113
ref|XP_002322538.2| transcription initiation factor IIF alpha su...   410   e-112
ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [A...   409   e-111
gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus...   407   e-111
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|...   407   e-111
ref|XP_002308775.1| transcription initiation factor IIF alpha su...   404   e-110
gb|EOY28869.1| Transcription activators,DNA binding,RNA polymera...   401   e-109
gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus...   400   e-108
ref|XP_006586768.1| PREDICTED: transcription initiation factor I...   398   e-108
ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Popu...   396   e-107
ref|XP_004486214.1| PREDICTED: transcription initiation factor I...   387   e-105
ref|XP_004983299.1| PREDICTED: transcription initiation factor I...   371   e-100
ref|XP_004983298.1| PREDICTED: transcription initiation factor I...   367   7e-99
ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutr...   367   1e-98

>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Vitis vinifera]
          Length = 534

 Score =  436 bits (1120), Expect = e-119
 Identities = 242/519 (46%), Positives = 307/519 (59%), Gaps = 5/519 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL+CG +MAE    C DCG P+ +LIREYNVR+ ++ DK++FIGRFV GLP FSK
Sbjct: 21   KHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSSGDKNYFIGRFVTGLPGFSK 80

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+D+KW+L +EGL+GRQ+++ LR+KYKNKP LLED+              +ATYYLLM
Sbjct: 81   KKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQYQYHGQLEGSQSATYYLLM 140

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RR+ A+GYQRW+MK A +G AAF
Sbjct: 141  MQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKAANNGPAAF 200

Query: 541  GEVEKAENVKP--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EE 711
            GEVEK ++ +                                      +RLGL K+S ++
Sbjct: 201  GEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEEDEEEEAERKNRLGLNKRSGDD 260

Query: 712  DEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDD 885
            DE+GP   ++              HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQD+
Sbjct: 261  DEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDE 320

Query: 886  XXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXX 1065
                                          N               I LSPVLA      
Sbjct: 321  EDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDAEDDDDDEEEDEIGLSPVLAPKQKDV 380

Query: 1066 XXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVS 1245
                         ++A   ++P  SK++KGKRKS  +D K   G   KK+KTE +     
Sbjct: 381  PKEEPADNSPMKSATASARSTPPTSKSSKGKRKSNGDDMKTTNGGPPKKVKTENE----- 435

Query: 1246 GSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVA 1425
              S+ KDE P+ +K     K    S  K+ ++ + G VTEDE+RA L Q AP++TQ+LVA
Sbjct: 436  SKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTEDEIRAVLLQKAPVTTQDLVA 495

Query: 1426 RFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            +FKARLK+ EDK++FA IL++IS+IQKT   N VVLR+K
Sbjct: 496  KFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRDK 534


>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  436 bits (1120), Expect = e-119
 Identities = 242/519 (46%), Positives = 307/519 (59%), Gaps = 5/519 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL+CG +MAE    C DCG P+ +LIREYNVR+ ++ DK++FIGRFV GLP FSK
Sbjct: 26   KHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSSGDKNYFIGRFVTGLPGFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+D+KW+L +EGL+GRQ+++ LR+KYKNKP LLED+              +ATYYLLM
Sbjct: 86   KKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQYQYHGQLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RR+ A+GYQRW+MK A +G AAF
Sbjct: 146  MQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRRTADGYQRWMMKAANNGPAAF 205

Query: 541  GEVEKAENVKP--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EE 711
            GEVEK ++ +                                      +RLGL K+S ++
Sbjct: 206  GEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEEDEEEEAERKNRLGLNKRSGDD 265

Query: 712  DEDGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDD 885
            DE+GP   ++              HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQD+
Sbjct: 266  DEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDE 325

Query: 886  XXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXX 1065
                                          N               I LSPVLA      
Sbjct: 326  EDEDDSNEEEGGLSKSGKELKKLLGKAAGMNDSDAEDDDDDEEEDEIGLSPVLAPKQKDV 385

Query: 1066 XXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVS 1245
                         ++A   ++P  SK++KGKRKS  +D K   G   KK+KTE +     
Sbjct: 386  PKEEPADNSPMKSATASARSTPPTSKSSKGKRKSNGDDMKTTNGGPPKKVKTENE----- 440

Query: 1246 GSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVA 1425
              S+ KDE P+ +K     K    S  K+ ++ + G VTEDE+RA L Q AP++TQ+LVA
Sbjct: 441  SKSSAKDEGPSPSKVTATPKGTPSSSVKTGSTSSAGPVTEDEIRAVLLQKAPVTTQDLVA 500

Query: 1426 RFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            +FKARLK+ EDK++FA IL++IS+IQKT   N VVLR+K
Sbjct: 501  KFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRDK 539


>ref|XP_006467340.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Citrus sinensis]
            gi|568825955|ref|XP_006467341.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Citrus sinensis]
          Length = 538

 Score =  431 bits (1108), Expect = e-118
 Identities = 246/521 (47%), Positives = 312/521 (59%), Gaps = 7/521 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MAE KA C DCG  + +LIREYNVR  N++DK++FIGRFV GLPSFSK
Sbjct: 26   KHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYNVRPSNSSDKNYFIGRFVSGLPSFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KWTL ++GL+GRQ+T+TLR+KYKNKP +LED+              +ATYYLL+
Sbjct: 86   KKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWMLEDETGQAQYQGHLEGSQSATYYLLV 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            MH KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GY+RW+MK A +GAAAF
Sbjct: 146  MHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKSE-EDE 717
            GEVEK ++ +                                    +RLGL K+ E +DE
Sbjct: 206  GEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDE 265

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQD+  
Sbjct: 266  EGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEED 325

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLA--XXXXXX 1065
                                      + +               +  SP+LA        
Sbjct: 326  EDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPK 385

Query: 1066 XXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVS 1245
                          S    A+P+ SK+ KGKRKS  +D +  +GA  KK+KTE  +TK  
Sbjct: 386  KEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTE-NETK-- 442

Query: 1246 GSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVA 1425
              S+ +DE  +++K + P K AS S   ST+  A+G VT +E+RA L Q AP++TQ+LVA
Sbjct: 443  --SSARDENVSASKSSAPAKGASSSRTGSTS--ASGPVTAEEIRAVLLQQAPVTTQDLVA 498

Query: 1426 RFKARLKAPEDKQSFAAILKKISRIQKTANG--NLVVLREK 1542
            +FK RL++ ED+ +FA ILK+IS+IQKT NG  N VVLREK
Sbjct: 499  KFKPRLRSTEDRTAFADILKRISKIQKT-NGPSNYVVLREK 538


>ref|XP_006449854.1| hypothetical protein CICLE_v10014841mg [Citrus clementina]
            gi|567915083|ref|XP_006449855.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552465|gb|ESR63094.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
            gi|557552466|gb|ESR63095.1| hypothetical protein
            CICLE_v10014841mg [Citrus clementina]
          Length = 538

 Score =  431 bits (1108), Expect = e-118
 Identities = 246/521 (47%), Positives = 312/521 (59%), Gaps = 7/521 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MAE KA C DCG  + +LIREYNVR  N++DK++FIGRFV GLPSFSK
Sbjct: 26   KHMTLCLTCGKTMAENKAKCFDCGAIVTRLIREYNVRPSNSSDKNYFIGRFVSGLPSFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KWTL ++GL+GRQ+T+TLR+KYKNKP +LED+              +ATYYLL+
Sbjct: 86   KKNAENKWTLHKDGLQGRQVTDTLREKYKNKPWMLEDETGQAQYQGHLEGSQSATYYLLV 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            MH KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GY+RW+MK A +GAAAF
Sbjct: 146  MHSKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKSE-EDE 717
            GEVEK ++ +                                    +RLGL K+ E +DE
Sbjct: 206  GEVEKPDDKESAGTGGRGRSKKSGDEDEGNVSDRGEEDEDEEAKRKNRLGLNKRGEDDDE 265

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQD+  
Sbjct: 266  EGPRGGDLDLDEDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEED 325

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLA--XXXXXX 1065
                                      + +               +  SP+LA        
Sbjct: 326  EDEEEEGGLSKSGKELKKLLGRANGLNESDAEDDDDEDDDMEDEVGFSPILAPKHKDTPK 385

Query: 1066 XXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVS 1245
                          S    A+P+ SK+ KGKRKS  +D +  +GA  KK+KTE  +TK  
Sbjct: 386  KEEPADNSPAKPAPSGSGRATPSTSKSAKGKRKSNGDDARAPSGAPLKKVKTE-NETK-- 442

Query: 1246 GSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVA 1425
              S+ +DE  +++K + P K AS S   ST+  A+G VT +E+RA L Q AP++TQ+LVA
Sbjct: 443  --SSARDENVSASKSSAPAKGASSSRTGSTS--ASGPVTAEEIRAVLLQQAPVTTQDLVA 498

Query: 1426 RFKARLKAPEDKQSFAAILKKISRIQKTANG--NLVVLREK 1542
            +FK RL++ ED+ +FA ILK+IS+IQKT NG  N VVLREK
Sbjct: 499  KFKPRLRSTEDRTAFADILKRISKIQKT-NGPSNYVVLREK 538


>ref|XP_004250258.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Solanum lycopersicum]
          Length = 534

 Score =  417 bits (1073), Expect = e-114
 Identities = 242/525 (46%), Positives = 306/525 (58%), Gaps = 11/525 (2%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KH+TLCL+CG +MAE +  C +CG P+ +LIREYNVR+C++ DK+HFI RF  GLP FSK
Sbjct: 26   KHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDKNHFIARFASGLPKFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N DSKWTL +EGL+GRQ+T+TLR+KYKNKP LLED+              +A YYLLM
Sbjct: 86   KKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGHLEGAQSAQYYLLM 144

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M G+E  AIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GYQRW+MK A +G AAF
Sbjct: 145  MQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAF 204

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EEDE 717
            GE+E+ ++ +                                    +RLGL K+  ++DE
Sbjct: 205  GELERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGDEDEEEEAARKNRLGLNKRGIDDDE 264

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGNDPEEREDL PE+PAPPEIKQD+  
Sbjct: 265  EGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEIPAPPEIKQDEDD 324

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXXX 1071
                                        N               I  SPVLA        
Sbjct: 325  EEEGEEEGGGLSKSGKELKKLLGKANGLNESDEDDDDDDDTEEDI--SPVLA------PK 376

Query: 1072 XXXXXXXXXXXSSAPTTASPNG-------SKATKGKRKSGNEDTKPNTGAATKKIKTEAQ 1230
                       +++P  A+ +G       SK+ K KRK+  +++KP +GA  KK+KTEA 
Sbjct: 377  PKEAPKEEPVETNSPLKAAASGSNRGTPTSKSAKTKRKANGDESKPTSGAPLKKVKTEA- 435

Query: 1231 DTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPIST 1410
            D K       KDE P+SAK     K AS S +K+  S ATG VTEDE+RA L Q  P++T
Sbjct: 436  DAKPG-----KDETPSSAKNTALPKGASSS-SKTAPSSATGPVTEDEIRAVLLQRKPVTT 489

Query: 1411 QELVARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            Q+LV++FK+RLK  EDK +FA +L+KIS+IQKT  G + VVLRE+
Sbjct: 490  QDLVSQFKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 534


>ref|XP_006352367.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X4 [Solanum tuberosum]
          Length = 535

 Score =  414 bits (1065), Expect = e-113
 Identities = 239/519 (46%), Positives = 301/519 (57%), Gaps = 5/519 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KH+TLCL+CG +MAE +  C +CG P+ +LIREYNVR+C++ DK+HFI RF  GLP FSK
Sbjct: 26   KHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDKNHFIARFASGLPKFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N DSKWTL +EGL+GRQ+T+TLR+KYKNKP LLED+              +A YYLLM
Sbjct: 86   KKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGHLEGAQSAQYYLLM 144

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M G+E  AIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GYQRW+MK A +G AAF
Sbjct: 145  MQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAF 204

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EEDE 717
            GEVE+ ++ +                                    +RLGL K+  ++DE
Sbjct: 205  GEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGDEDEEEEAARKNRLGLNKRGIDDDE 264

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGNDPEEREDL PE+PAPPEIKQD+  
Sbjct: 265  EGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEIPAPPEIKQDEDD 324

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXXX 1071
                                        N                 +SPVLA        
Sbjct: 325  EEEGEEEGGGLSKSGKELKKLLGKANGLNESDAEDDDDDDDTEE-DISPVLAPKPKEAPK 383

Query: 1072 XXXXXXXXXXXSSAP-TTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSG 1248
                        +A  +      SK+ K KRK+  +++KP +GA  KK+KTE  D K   
Sbjct: 384  EEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDESKPTSGAPLKKVKTET-DAKPG- 441

Query: 1249 SSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVAR 1428
                KDE P+SAK +   K AS S +K+  S ATG VTEDE+RA L Q  P++TQ+LV++
Sbjct: 442  ----KDETPSSAKNSALPKGASSS-SKTAPSPATGPVTEDEIRAVLLQRKPVTTQDLVSQ 496

Query: 1429 FKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            FK+RLK  EDK +FA +L+KIS+IQKT  G + VVLRE+
Sbjct: 497  FKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 535


>ref|XP_006352364.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Solanum tuberosum]
            gi|565371548|ref|XP_006352365.1| PREDICTED: transcription
            initiation factor IIF subunit alpha-like isoform X2
            [Solanum tuberosum] gi|565371550|ref|XP_006352366.1|
            PREDICTED: transcription initiation factor IIF subunit
            alpha-like isoform X3 [Solanum tuberosum]
          Length = 538

 Score =  414 bits (1065), Expect = e-113
 Identities = 239/519 (46%), Positives = 301/519 (57%), Gaps = 5/519 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KH+TLCL+CG +MAE +  C +CG P+ +LIREYNVR+C++ DK+HFI RF  GLP FSK
Sbjct: 26   KHLTLCLSCGKNMAETRDKCYECGTPVTRLIREYNVRACSSNDKNHFIARFASGLPKFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N DSKWTL +EGL+GRQ+T+TLR+KYKNKP LLED+              +A YYLLM
Sbjct: 86   KKN-DSKWTLQKEGLQGRQVTDTLREKYKNKPWLLEDETGQFQFHGHLEGAQSAQYYLLM 144

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M G+E  AIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GYQRW+MK A +G AAF
Sbjct: 145  MQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPAAF 204

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EEDE 717
            GEVE+ ++ +                                    +RLGL K+  ++DE
Sbjct: 205  GEVERFDDKEGGSGGTRGRKKTSGDEDEGNASDHGDEDEEEEAARKNRLGLNKRGIDDDE 264

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGNDPEEREDL PE+PAPPEIKQD+  
Sbjct: 265  EGPRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEIPAPPEIKQDEDD 324

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXXX 1071
                                        N                 +SPVLA        
Sbjct: 325  EEEGEEEGGGLSKSGKELKKLLGKANGLNESDAEDDDDDDDTEE-DISPVLAPKPKEAPK 383

Query: 1072 XXXXXXXXXXXSSAP-TTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSG 1248
                        +A  +      SK+ K KRK+  +++KP +GA  KK+KTE  D K   
Sbjct: 384  EEPVETNSPLKPAASGSNRGTPTSKSAKTKRKANGDESKPTSGAPLKKVKTET-DAKPG- 441

Query: 1249 SSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVAR 1428
                KDE P+SAK +   K AS S +K+  S ATG VTEDE+RA L Q  P++TQ+LV++
Sbjct: 442  ----KDETPSSAKNSALPKGASSS-SKTAPSPATGPVTEDEIRAVLLQRKPVTTQDLVSQ 496

Query: 1429 FKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            FK+RLK  EDK +FA +L+KIS+IQKT  G + VVLRE+
Sbjct: 497  FKSRLKCKEDKAAFAEVLRKISKIQKTTTGSSYVVLRER 535


>ref|XP_002322538.2| transcription initiation factor IIF alpha subunit family protein
            [Populus trichocarpa] gi|550320589|gb|EEF04299.2|
            transcription initiation factor IIF alpha subunit family
            protein [Populus trichocarpa]
          Length = 540

 Score =  410 bits (1054), Expect = e-112
 Identities = 240/524 (45%), Positives = 302/524 (57%), Gaps = 10/524 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCLNCG +MAE +  C DCG  + +LIREYNVR+  ++DK++FIGRFV GLPSFSK
Sbjct: 26   KHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYNVRASTSSDKNYFIGRFVTGLPSFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KW+L +EG+ GRQIT+ LR+K+KNKP LLED+              +ATYYLLM
Sbjct: 86   KKNAENKWSLHKEGILGRQITDALREKFKNKPWLLEDETGQSQYQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQW--YTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAA 534
            M GKEFVAIPAG W  Y FNKVA YKQLTLEEAEEKM+ RRK A+GY+RW+MK A +GAA
Sbjct: 146  MTGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAA 205

Query: 535  AFGEVEKAENVK-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK-SE 708
            AFGEVEK ++ +                                     SRLGL K+  +
Sbjct: 206  AFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDRGEEDEEEEAGRKSRLGLNKQGGD 265

Query: 709  EDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQD 882
            +DE+GP                   HEE+FTDDDEAV  DPEEREDL PEVPAPPEIKQD
Sbjct: 266  DDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQD 325

Query: 883  DXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXI--ALSPVLAXXX 1056
            +                             AN               +   +SPVLA   
Sbjct: 326  EDDEDEENEEGGLSKSGKELKKLLG----KANGLNESDVEDDDDDEDMDDDISPVLAPKQ 381

Query: 1057 XXXXXXXXXXXXXXXXSSAPTTA--SPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQ 1230
                             +   +A  +P+ SK+ KGKRK   ED K + GA  KK+KTE +
Sbjct: 382  KDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAKGKRKLNGEDAKSSNGAPVKKVKTENE 441

Query: 1231 DTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPIST 1410
                    AVK+E   + KG    K    S    +TS +TG VTE+E+RA L Q  P++T
Sbjct: 442  -----VKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPVTEEEIRAVLLQNGPVTT 496

Query: 1411 QELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            Q+LVARFK+RL+ PEDK++FA IL++IS+IQKT+  N VVLR+K
Sbjct: 497  QDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNYVVLRDK 540


>ref|XP_006857695.1| hypothetical protein AMTR_s00061p00167160 [Amborella trichopoda]
            gi|548861791|gb|ERN19162.1| hypothetical protein
            AMTR_s00061p00167160 [Amborella trichopoda]
          Length = 558

 Score =  409 bits (1052), Expect = e-111
 Identities = 239/525 (45%), Positives = 296/525 (56%), Gaps = 11/525 (2%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KH+TLC +CG +MAE ++ C +CG PI +LIREYNVR+   TDK+++I RFV GLP FS+
Sbjct: 37   KHLTLCQSCGKTMAETRSKCYECGTPITRLIREYNVRANVNTDKTYYISRFVMGLPGFSR 96

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N D KWTL +EGL+GRQ+TE+LR+K+KNKP LLED+              +ATYYLL 
Sbjct: 97   KKNGDVKWTLQKEGLQGRQVTESLREKFKNKPWLLEDETGQHQYHGQLEGAQSATYYLLT 156

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
              GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RRKNAEGY+RW+MK A +GA+AF
Sbjct: 157  NQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKNAEGYERWIMKAANNGASAF 216

Query: 541  GEVEKAENV--KPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKSEED 714
             ++EK +                                         +RLGL KK+ +D
Sbjct: 217  RDMEKIDGSGGNGGASGGRRRKGSGDEDDDAVRSDREGEDDDDEEARKNRLGLNKKTFDD 276

Query: 715  EDGPA----NNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQD 882
            E        ++              HEE+FTDDDEAVGNDPEERED  PEVPAPPEIKQD
Sbjct: 277  EGEEVPRGDDHDFDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDFAPEVPAPPEIKQD 336

Query: 883  DXXXXXXXXXXXXXXXXXXXXXXXXXXXRSA--NXXXXXXXXXXXXXXXIALSPVLAXXX 1056
            D                                                +  S VLA   
Sbjct: 337  DEDEDEGNEDEEGGLSKSGRELKKLLGRAGGLNESDGDDDDDDDDLDDDMGTSSVLAPKQ 396

Query: 1057 XXXXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDT 1236
                            +S     +P+ SK+TK KRKSG++D KP   A +KK K E  D+
Sbjct: 397  KEVKEEPVDNSPTKTATSGSNRGTPSTSKSTKAKRKSGSDDAKPAASAPSKKPKIE-NDS 455

Query: 1237 KVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGA--VTEDEVRAFLKQVAPIST 1410
            K   ++ VKDE  ++ + N P K  S S  K   S    A  VTEDE+RA L Q+AP++T
Sbjct: 456  K--PATTVKDEPASAQRSNTPVKLPSSSGTKPAGSPVAAAVPVTEDEIRAVLLQMAPVTT 513

Query: 1411 QELVARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            Q+LV +FKARL+  EDK SFAA+LKKISRIQKT  G N VVLR+K
Sbjct: 514  QDLVGKFKARLRTKEDKDSFAAVLKKISRIQKTNGGANFVVLRDK 558


>gb|ESW19654.1| hypothetical protein PHAVU_006G143600g [Phaseolus vulgaris]
          Length = 540

 Score =  407 bits (1046), Expect = e-111
 Identities = 234/522 (44%), Positives = 304/522 (58%), Gaps = 8/522 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL+CG +MAE +A C DCG+ + +LIREYNVR+ +T DK++FIGRF+ GLP FSK
Sbjct: 26   KHMTLCLSCGKTMAENRAKCVDCGVTLTRLIREYNVRASSTNDKNYFIGRFMTGLPDFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K ++++KW L +EGL GRQIT+TLR+KYKNKP LLED+              +ATYYLLM
Sbjct: 86   KKSAENKWALQKEGLLGRQITDTLREKYKNKPWLLEDETGQSQYQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
               KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ R+K A+GYQRW+MK A +G AAF
Sbjct: 146  KERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK-SEEDE 717
            G+  K +  K                                    +RLGL K+ +++DE
Sbjct: 206  GDHGKFDE-KESNTGGGRSRKKTGEEEEGHVSDKGEEDEDDESERKNRLGLYKRPADDDE 264

Query: 718  DGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP   ++              HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQD+  
Sbjct: 265  EGPRGGDHDLEDDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEE 324

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSAN--XXXXXXXXXXXXXXXIALSPVLAXXXXXX 1065
                                        N                 +   PV+A      
Sbjct: 325  EDEDNEEGGGLSKSGKELKKLLGKASGLNESDAEDEDDDDDDMDDEVGNPPVIATKTKDA 384

Query: 1066 XXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVS 1245
                         ++         SK++KGKRKS NE+ KP   A  KK+K E +     
Sbjct: 385  PKEEPVDNSPSKPTATGPARGTPSSKSSKGKRKS-NEEVKPTNTATPKKVKQENEP---- 439

Query: 1246 GSSAVKDEMPASAKGNNPTK--PASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQEL 1419
              S+ KD   +++K N P K  P S S    +++ A+G V+E+E+RA L+Q  P++TQ+L
Sbjct: 440  -KSSAKDVNGSASKSNAPPKGTPPSSSSKPGSSATASGPVSEEEIRAVLRQKTPVTTQDL 498

Query: 1420 VARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            VA+FKARL++ EDKQ+FA ILK+IS+IQKTANG + V+LR+K
Sbjct: 499  VAKFKARLRSSEDKQAFAEILKRISKIQKTANGSSYVILRDK 540


>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
            tfiif-alpha, putative [Ricinus communis]
          Length = 533

 Score =  407 bits (1046), Expect = e-111
 Identities = 230/517 (44%), Positives = 303/517 (58%), Gaps = 3/517 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL+CG +MAE  A C DCG  + +LIREYNVR+ +++DK++FIGRFV GLPSFSK
Sbjct: 27   KHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNVRASSSSDKNYFIGRFVTGLPSFSK 86

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KW+L +EGL+GRQ+T+ LR+KYKN+P LLED+              +ATYYLL+
Sbjct: 87   KKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLEDETGQFQYQGHLEGSQSATYYLLI 146

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            + GKEFVAIPA  WY FNKVAQYKQLTLEEAEEKMR RRK A+GY+RW+MK A +G AAF
Sbjct: 147  LQGKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKMRNRRKTADGYERWMMKAANNGPAAF 206

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK-SEEDE 717
            GEVEK ++                                      +RLGL K+  ++DE
Sbjct: 207  GEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRGDEDEEEEAARKNRLGLNKRGGDDDE 266

Query: 718  DGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP   ++              HEE+FTDDDEAVGND EEREDL PEVPAPPEIKQD+  
Sbjct: 267  EGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVGNDREEREDLAPEVPAPPEIKQDEDD 326

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXXX 1071
                                        +               +++SPVLA        
Sbjct: 327  EDEENEEGGLSKSGKELKKLLGRAGGLNDSDAEDDDDDDDMDEDVSISPVLA-PKQTPKE 385

Query: 1072 XXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSGS 1251
                       +SA +  +P+ SK+ KGKRK  +++ K    A  KK+KTE +       
Sbjct: 386  EPADNSPAKPMTSASSKGTPSTSKSAKGKRKLNSDEAKQTNVAPQKKVKTENE-----LK 440

Query: 1252 SAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVARF 1431
              VK+E   ++K +   K A  S    +TS     VTE+E+RA L Q  P++TQ+LVARF
Sbjct: 441  PTVKEESAPTSKSSATPKAAPPSAKTGSTS----PVTEEEIRAVLLQNGPVTTQDLVARF 496

Query: 1432 KARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            K+RLK+ EDK++FA IL++IS+IQKT+  + VVLR+K
Sbjct: 497  KSRLKSSEDKKAFADILRRISKIQKTSGSSYVVLRDK 533


>ref|XP_002308775.1| transcription initiation factor IIF alpha subunit family protein
            [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
            transcription initiation factor IIF alpha subunit family
            protein [Populus trichocarpa]
          Length = 541

 Score =  404 bits (1038), Expect = e-110
 Identities = 237/524 (45%), Positives = 298/524 (56%), Gaps = 10/524 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MAE +  C DCG  + +LIREYNVR+  +++K++FIGRFV GLP FSK
Sbjct: 26   KHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYNVRASTSSEKNYFIGRFVTGLPGFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KW+L++EG+ GRQIT+TLR+K+KNKP LLED+              +ATYYLLM
Sbjct: 86   KKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLLEDETGQFQYQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQW--YTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAA 534
            M GKEFVAIPAG W  Y FNKVA YKQLTLEEAEEKM+ RRK A+GY+RW+MK A +GAA
Sbjct: 146  MSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAAHNGAA 205

Query: 535  AFGEVEKAENVK-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTK-KSE 708
            AFGEVEK ++                                       SRLGL K   +
Sbjct: 206  AFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDKGEEDEEEEAGRKSRLGLNKGGGD 265

Query: 709  EDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQD 882
            +DE+GP                   HEE+FTDDDEAV  DPEEREDL PEVPAPPEIKQD
Sbjct: 266  DDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQD 325

Query: 883  DXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXI--ALSPVLAXXX 1056
            +                             AN               +   +SPVLA   
Sbjct: 326  EEDEDEENEEGGLSKSGKELKKLLG----KANGLNESDAEDDDDDDDMDDDISPVLAPKQ 381

Query: 1057 XXXXXXXXXXXXXXXXSSAPTTA--SPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQ 1230
                             + P +A  +P+ SK+ KGKRK   +D K + GA  KK+KTE +
Sbjct: 382  KDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRKLNADDAKTSNGAPVKKVKTENE 441

Query: 1231 DTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPIST 1410
                     VK+E   + KG    K    S     TS  TG VTE+E+RA L Q  P++T
Sbjct: 442  -----VKPTVKEESSPATKGTATPKIMPSSSKTGPTSGPTGPVTEEEIRAVLLQNGPVTT 496

Query: 1411 QELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            Q+LVARFK+RL+ PEDK++FA IL++IS+IQKT+  N VVLR+K
Sbjct: 497  QDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNFVVLRDK 540


>gb|EOY28869.1| Transcription activators,DNA binding,RNA polymerase II transcription
            factors,catalytics,transcription initiation factors
            isoform 1 [Theobroma cacao]
          Length = 549

 Score =  401 bits (1031), Expect = e-109
 Identities = 237/533 (44%), Positives = 305/533 (57%), Gaps = 19/533 (3%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLC+ CG +MAE +  C +CG  + +LIREYNVR   +TDK+ FIGRF+ GLPSFSK
Sbjct: 26   KHMTLCVTCGKTMAENQGKCFECGAIVTRLIREYNVRPSPSTDKNFFIGRFMSGLPSFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KW+L +EGL+GRQ+T+ LR+KYKNKP +LED+              +ATYYLLM
Sbjct: 86   KKNAENKWSLQKEGLQGRQLTDPLREKYKNKPWMLEDETGQAQYQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M GKEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GY+RW+MK A +GAAAF
Sbjct: 146  MQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYERWMMKAANNGAAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK-SEEDE 717
            GEVEK ++                                      +RLGL KK  ++DE
Sbjct: 206  GEVEKFDDKDNSVAGGKGRKKPTGDDDEGHVSDRGEEDEEEEAARKNRLGLDKKGGDDDE 265

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGN+PEER DL PEVPAPPEIK+D+  
Sbjct: 266  EGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNEPEER-DLAPEVPAPPEIKEDEDE 324

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXXX 1071
                                        N               ++ +P  A        
Sbjct: 325  EDEEQEGGLSKSGKELKKLLGKAG--GLNDSDADDDDDDDDDDDMSFNPAPASKQKDAPK 382

Query: 1072 XXXXXXXXXXXSS-APTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSG 1248
                       +S A    +   SK+ KGKRK+  +DTK + G   KK+K+E  D+K   
Sbjct: 383  EEPADNSPMKPASSASARGTSTASKSAKGKRKANGDDTKASNGTPLKKVKSET-DSK--- 438

Query: 1249 SSAVKDEMPASAKGNNPTKPASQSPNKSTTSQA-------------TGAVTEDEVRAFLK 1389
             S+VK+E  +++KG+ P K    S    +TS A              G VTE+E+RA L 
Sbjct: 439  -SSVKEESASASKGSVPPKGTPSSAKAGSTSSAVTSSSAKAGSASTAGPVTEEEIRAVLL 497

Query: 1390 QVAPISTQELVARFKARLKAPEDKQSFAAILKKISRIQKTANG--NLVVLREK 1542
            Q AP++T +LVA+FKARLK+PEDK++FA IL++IS+IQKT NG  N VVLR+K
Sbjct: 498  QKAPVTTSDLVAKFKARLKSPEDKKAFADILRRISKIQKT-NGPNNYVVLRDK 549


>gb|ESW26005.1| hypothetical protein PHAVU_003G083500g [Phaseolus vulgaris]
          Length = 540

 Score =  400 bits (1028), Expect = e-108
 Identities = 230/521 (44%), Positives = 296/521 (56%), Gaps = 7/521 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MAE KA C DCG  + +LIREY+VR+ + +DK +FIGRFV GLP FSK
Sbjct: 26   KHMTLCLTCGKTMAENKAKCFDCGATVTRLIREYSVRASSGSDKHYFIGRFVSGLPDFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K ++++KW+L +EGL+ RQ+T+ LR+KYKNKP LLED+              +ATYYLLM
Sbjct: 86   KKSAENKWSLQKEGLQSRQVTDALREKYKNKPWLLEDETGQSQFQGHLEGAQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M  KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ R+K A+GY+RW+MK A +G AAF
Sbjct: 146  MERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAANNGPAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK-SEEDE 717
            GE  + +  +                                    SRLGL KK  ++DE
Sbjct: 206  GERGRFDEKESNVGGGGKNRKKTDEDEEGHVSDKGEEDEDDEVARRSRLGLNKKGGDDDE 265

Query: 718  DGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP                   HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQDD  
Sbjct: 266  EGPRGGDLDQDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDDED 325

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXXX 1071
                                                          + PV+A        
Sbjct: 326  EDEDNEEGGGLSKSGKELKKLLRTSGLNESDAEDDDDDDDVDDEAGVPPVIASKPKDAPK 385

Query: 1072 XXXXXXXXXXXSSAPTT-ASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSG 1248
                       +   T   + + SK +KGKRK  NE+TK   GA  KK+K E +      
Sbjct: 386  EEPADNSPSKPAVTGTARGTLSTSKPSKGKRKL-NEETKAANGAPPKKVKIENEP----- 439

Query: 1249 SSAVKDEMPASAKGNNPTK---PASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQEL 1419
             S VKDE  +++K N P+K   P   S   S++  A+G V+E+E+RA L Q  P++TQ+L
Sbjct: 440  KSTVKDENGSTSKNNTPSKGVPPTPSSKGGSSSPIASGPVSEEEIRAVLMQKTPLTTQDL 499

Query: 1420 VARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            VA+F+ARL+ PEDK++FA ILK+IS+IQKT   + V+LR++
Sbjct: 500  VAKFRARLRCPEDKKAFADILKRISKIQKTNASSYVILRDR 540


>ref|XP_006586768.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            [Glycine max]
          Length = 536

 Score =  398 bits (1023), Expect = e-108
 Identities = 234/521 (44%), Positives = 299/521 (57%), Gaps = 7/521 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MA  +A C DCG  + +LIREYNVR+ +  DK++FIGRF+ GLP FSK
Sbjct: 26   KHMTLCLGCGKTMAAKRAKCVDCGATLTRLIREYNVRASSPNDKNYFIGRFINGLPDFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K ++++KW+L ++GL GRQIT+TLR+KYKNKP LLED+              +ATYYLLM
Sbjct: 86   KKSAENKWSLQKDGLHGRQITDTLREKYKNKPWLLEDETGQSQFQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
               KEFVAIPAG WY FNKVAQYKQLTLEEAEEKM+ R+K A+GYQRW+MK A +G AAF
Sbjct: 146  KERKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EEDE 717
            GE  K ++                                      SRLGL K++ E+DE
Sbjct: 206  GEHGKFDD-NESNTGGGRSHKKTDEDDEGHVSDKGEEDEEEESERKSRLGLNKRAGEDDE 264

Query: 718  DGP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDXX 891
            +GP   ++              HEE+FTDDDEAVGNDPEEREDL PEVPAPPEIKQD+  
Sbjct: 265  EGPRGGDHDLDDDDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDEEE 324

Query: 892  XXXXXXXXXXXXXXXXXXXXXXXXXRSAN--XXXXXXXXXXXXXXXIALSPVLAXXXXXX 1065
                                        N                 + + PV+A      
Sbjct: 325  EDEDNEEGEGLSKSGKELKKLLGKASGLNESDAEDDDDDDDDVDDDVGVPPVIATKQKDA 384

Query: 1066 XXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKP-NTGAATKKIKTEAQDTKV 1242
                         ++         SK++KGKRK  NE+TKP NT    K+ K  A+D  V
Sbjct: 385  LKEEPIDNSPSKPTATGPARGTPSSKSSKGKRKL-NEETKPSNTATPKKEPKLSAKD--V 441

Query: 1243 SGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELV 1422
            +GS++     P   KG   T P S     STT+ A+G V+E+E+RA L+Q  P++TQ+LV
Sbjct: 442  NGSASKSSAPP---KG---TPPLSSKGGSSTTTTASGPVSEEEIRAVLRQKTPVTTQDLV 495

Query: 1423 ARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            A+FKARL+  EDKQ+FA ILK+IS+IQKT  G + V+LR+K
Sbjct: 496  AKFKARLRCSEDKQAFAEILKRISKIQKTTTGASYVILRDK 536


>ref|XP_006380878.1| hypothetical protein POPTR_0006s01070g [Populus trichocarpa]
            gi|550335193|gb|ERP58675.1| hypothetical protein
            POPTR_0006s01070g [Populus trichocarpa]
          Length = 536

 Score =  396 bits (1018), Expect = e-107
 Identities = 236/524 (45%), Positives = 296/524 (56%), Gaps = 10/524 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MAE +  C DCG  + +LIREYNVR+  +++K++FIGRFV GLP FSK
Sbjct: 26   KHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYNVRASTSSEKNYFIGRFVTGLPGFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K N+++KW+L++EG+ GRQIT+TLR+K+KNKP LLED+              +ATYYLLM
Sbjct: 86   KKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLLEDETGQFQYQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQW--YTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAA 534
            M GKEFVAIPAG W  Y FNKVA YKQLTLEEAEEKM+ RRK A+GY+RW+MK A +GAA
Sbjct: 146  MSGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAAHNGAA 205

Query: 535  AFGEVEKAENVK-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTK-KSE 708
            AFGEVEK ++                                       SRLGL K   +
Sbjct: 206  AFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNVSDKGEEDEEEEAGRKSRLGLNKGGGD 265

Query: 709  EDEDGPANN--XXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQD 882
            +DE+GP                   HEE+FTDDDEAV  DPEEREDL PEVPAPPEIKQD
Sbjct: 266  DDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVAIDPEEREDLAPEVPAPPEIKQD 325

Query: 883  DXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXI--ALSPVLAXXX 1056
            +                             AN               +   +SPVLA   
Sbjct: 326  EEDEDEENEEGGLSKSGKELKKLLG----KANGLNESDAEDDDDDDDMDDDISPVLAPKQ 381

Query: 1057 XXXXXXXXXXXXXXXXSSAPTTA--SPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQ 1230
                             + P +A  +P+ SK+ KGKRK   +D K + GA  KK   E +
Sbjct: 382  KDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAKGKRKLNADDAKTSNGAPVKK---EVK 438

Query: 1231 DTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPIST 1410
             T       VK+E   + KG    K    S     TS  TG VTE+E+RA L Q  P++T
Sbjct: 439  PT-------VKEESSPATKGTATPKIMPSSSKTGPTSGPTGPVTEEEIRAVLLQNGPVTT 491

Query: 1411 QELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLREK 1542
            Q+LVARFK+RL+ PEDK++FA IL++IS+IQKT+  N VVLR+K
Sbjct: 492  QDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNFVVLRDK 535


>ref|XP_004486214.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Cicer arietinum]
          Length = 538

 Score =  387 bits (995), Expect = e-105
 Identities = 232/523 (44%), Positives = 298/523 (56%), Gaps = 12/523 (2%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KHMTLCL CG +MAE +A C DCG  + +LIREYNVR+ +  DK++FIGRF+ GLP FSK
Sbjct: 26   KHMTLCLTCGKTMAENRAKCYDCGATLTRLIREYNVRASSANDKNYFIGRFMTGLPDFSK 85

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
            K ++++KW L ++GL+ R++T+ LR+K+KN+P LLED+              +ATYYLLM
Sbjct: 86   KKSAENKWCLQKDGLQRREVTDALREKFKNRPWLLEDETGQSQYQGHLEGSQSATYYLLM 145

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
               KEFVA PAG WY FNKVAQYKQLTLEEAEEKM+ R+K A+GYQRW+MK A +G AAF
Sbjct: 146  KEKKEFVAXPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAF 205

Query: 541  GEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKSEEDED 720
            GE  K +  K                                    SRLGL KKS  D+D
Sbjct: 206  GEHGKLDE-KESNTGGGRSRKKTGDDDEGVVSDKGEEDEDEEVDRKSRLGLNKKSGYDDD 264

Query: 721  ---GP--ANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQ-- 879
               GP   ++              HEE+FTDDDEAVGNDPEEREDL PE+PAPPEIKQ  
Sbjct: 265  EDEGPKGGDSDIDGDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEIPAPPEIKQDD 324

Query: 880  DDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXX 1059
            D+                              +               + + PV A    
Sbjct: 325  DEEDEDNEEEGGLSKSGKELKKLLGRTSGLDESDAEDDDDDDDDIDDEVGVPPVTAAKKE 384

Query: 1060 XXXXXXXXXXXXXXXSSAPTTASPNG----SKATKGKRKSGNEDTKPNTGAATKKIKTEA 1227
                            S PTT  P      SK++KGKRK+ +E+ KPN  A TKK+KTE 
Sbjct: 385  PKEEPVDTSP------SKPTTTGPARGTPTSKSSKGKRKA-SEEAKPNI-APTKKVKTE- 435

Query: 1228 QDTKVSGSSAVKDEMPASAKGNNPTKPASQSPNKSTTSQA-TGAVTEDEVRAFLKQVAPI 1404
             + K SG    KD   +++K N P+K A   P+K+ +S A +G VTE+E+R  L Q  P+
Sbjct: 436  NEPKSSG----KDVNGSTSKSNAPSKGAPPPPSKAGSSTAASGPVTEEEIRTVLMQKTPV 491

Query: 1405 STQELVARFKARLKAPEDKQSFAAILKKISRIQKTANGNLVVL 1533
            +TQ+LVA+FKARL+  EDKQ+FA ILK+IS+IQKT NG+  V+
Sbjct: 492  TTQDLVAKFKARLRCSEDKQAFAEILKRISKIQKTTNGSSYVI 534


>ref|XP_004983299.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X2 [Setaria italica]
          Length = 530

 Score =  371 bits (952), Expect = e-100
 Identities = 225/517 (43%), Positives = 280/517 (54%), Gaps = 4/517 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KH TLC  CG SMA ++A C  C  PI +LIREYNVR+   TDK++ IGRFV GLP FSK
Sbjct: 27   KHTTLCSECGKSMARSRARCLVCSSPITRLIREYNVRANAITDKTYSIGRFVTGLPPFSK 86

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXN--ATYYL 354
            K ++++KW+L +EGL+GRQI E +R+KY  KP +LED+              +  ATYYL
Sbjct: 87   KKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQYQYQGQMEGSQSATATYYL 146

Query: 355  LMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAA 534
            LM HGKEF A PAG WY F+K+AQYKQLTLEEAEEKM  R+ +A GY+RW+MK A +G A
Sbjct: 147  LMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAEEKMNKRKTSATGYERWMMKAAANGPA 206

Query: 535  AFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK--SE 708
            AFG   K                                         +RLGLTKK   +
Sbjct: 207  AFGSDIKKLEATNSGEKESGRPKKAKNNEEGNNSDKGEEDEEEEAARKNRLGLTKKGMDD 266

Query: 709  EDEDGPANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDX 888
            ++E G   +              HEE FTDDDEAV  DPEER DL PE+PAPPEIKQDD 
Sbjct: 267  DEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQDD- 325

Query: 889  XXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXX 1068
                                      R+A                   SPVLA       
Sbjct: 326  -----EENEEEGGLSKSGKELKKLLGRAAGLNDSDADEDEEEEDEDESSPVLAPKQKDQV 380

Query: 1069 XXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSG 1248
                        + +    S   +   K KRKSG +DTK + GAA+KK K E+ DTK SG
Sbjct: 381  KDEPVDNSPAKQTPSGHARSTPPASKFKQKRKSGADDTKTSGGAASKKAKVES-DTKASG 439

Query: 1249 SSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVAR 1428
               +K+E PASA      KP S++   S +      VTEDE+R+ L  VAP++TQ+LV+R
Sbjct: 440  ---IKEEAPASA------KPTSKTSASSKSGTNVSPVTEDEIRSVLLAVAPVTTQDLVSR 490

Query: 1429 FKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLRE 1539
            FK+RL+ PEDK +FA ILKKIS+IQKT   N VVLR+
Sbjct: 491  FKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 527


>ref|XP_004983298.1| PREDICTED: transcription initiation factor IIF subunit alpha-like
            isoform X1 [Setaria italica]
          Length = 531

 Score =  367 bits (943), Expect = 7e-99
 Identities = 224/517 (43%), Positives = 278/517 (53%), Gaps = 4/517 (0%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            KH TLC  CG SMA ++A C  C  PI +LIREYNVR+   TDK++ IGRFV GLP FSK
Sbjct: 27   KHTTLCSECGKSMARSRARCLVCSSPITRLIREYNVRANAITDKTYSIGRFVTGLPPFSK 86

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXN--ATYYL 354
            K ++++KW+L +EGL+GRQI E +R+KY  KP +LED+              +  ATYYL
Sbjct: 87   KKSAENKWSLHKEGLQGRQIPENMREKYNRKPWILEDETGQYQYQGQMEGSQSATATYYL 146

Query: 355  LMMHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAA 534
            LM HGKEF A PAG WY F+K+AQYKQLTLEEAEEKM  R+ +A GY+RW+MK A +G A
Sbjct: 147  LMRHGKEFNAYPAGSWYNFSKIAQYKQLTLEEAEEKMNKRKTSATGYERWMMKAAANGPA 206

Query: 535  AFGEVEKAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKK--SE 708
            AFG   K                                         +RLGLTKK   +
Sbjct: 207  AFGSDIKKLEATNSGEKESGRPKKAKNNEEGNNSDKGEEDEEEEAARKNRLGLTKKGMDD 266

Query: 709  EDEDGPANNXXXXXXXXXXXXXXHEEVFTDDDEAVGNDPEEREDLGPEVPAPPEIKQDDX 888
            ++E G   +              HEE FTDDDEAV  DPEER DL PE+PAPPEIKQDD 
Sbjct: 267  DEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEAVDIDPEERADLAPEIPAPPEIKQDDE 326

Query: 889  XXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXXXX 1068
                                       S                    SPVLA       
Sbjct: 327  ENEEEGGLSKSGKELKKLLGRAAGLNDSDADEDEEEEDQEDES-----SPVLAPKQKDQV 381

Query: 1069 XXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKVSG 1248
                        + +    S   +   K KRKSG +DTK + GAA+KK K E+ DTK SG
Sbjct: 382  KDEPVDNSPAKQTPSGHARSTPPASKFKQKRKSGADDTKTSGGAASKKAKVES-DTKASG 440

Query: 1249 SSAVKDEMPASAKGNNPTKPASQSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQELVAR 1428
               +K+E PASA      KP S++   S +      VTEDE+R+ L  VAP++TQ+LV+R
Sbjct: 441  ---IKEEAPASA------KPTSKTSASSKSGTNVSPVTEDEIRSVLLAVAPVTTQDLVSR 491

Query: 1429 FKARLKAPEDKQSFAAILKKISRIQKTANGNLVVLRE 1539
            FK+RL+ PEDK +FA ILKKIS+IQKT   N VVLR+
Sbjct: 492  FKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLRD 528


>ref|XP_006396740.1| hypothetical protein EUTSA_v10028564mg [Eutrema salsugineum]
            gi|557097757|gb|ESQ38193.1| hypothetical protein
            EUTSA_v10028564mg [Eutrema salsugineum]
          Length = 542

 Score =  367 bits (941), Expect = 1e-98
 Identities = 223/523 (42%), Positives = 282/523 (53%), Gaps = 9/523 (1%)
 Frame = +1

Query: 1    KHMTLCLNCGTSMAEAKAPCSDCGMPIRKLIREYNVRSCNTTDKSHFIGRFVQGLPSFSK 180
            +HMTLC  CG +MAE K+ C DCG  + +LIREYNVR+   TDK++FIGRFV GLP+F K
Sbjct: 27   RHMTLCFKCGKTMAENKSKCIDCGTIVTRLIREYNVRAAAPTDKNYFIGRFVSGLPNFKK 86

Query: 181  KTNSDSKWTLIREGLKGRQITETLRDKYKNKPLLLEDDISXXXXXXXXXXXXNATYYLLM 360
               S++KW+L ++  +GRQ T+  R+K KNKP +LED+              +ATYYLL+
Sbjct: 87   --GSENKWSLRKDIPQGRQFTDAQREKLKNKPWILEDETGQFQYQGHLEGSQSATYYLLV 144

Query: 361  MHGKEFVAIPAGQWYTFNKVAQYKQLTLEEAEEKMRTRRKNAEGYQRWLMKTAKDGAAAF 540
            M  KEF+AIPAG WY FNKVAQYKQLTLEEAEEKM+ RRK A+GYQRW+MK A +G A F
Sbjct: 145  MQNKEFIAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRKTADGYQRWMMKAANNGPALF 204

Query: 541  GEVE--KAENVKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRLGLTKKS-EE 711
            GE E  K                                         SRLGL KKS ++
Sbjct: 205  GETENDKEAGGSSGGGGRGRKKSSGGDEEEGNVSDRGEEDEEEEASRKSRLGLNKKSNDD 264

Query: 712  DEDGPANNXXXXXXXXXXXXXX--HEEVFTDDDEAVGNDPEEREDL-GPEVPAPPEIKQD 882
            DE+GP                   HEE+FTDDDEAVGNDPEEREDL  PE+PAPPEIKQ 
Sbjct: 265  DEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAVGNDPEEREDLLAPEIPAPPEIKQ- 323

Query: 883  DXXXXXXXXXXXXXXXXXXXXXXXXXXXRSANXXXXXXXXXXXXXXXIALSPVLAXXXXX 1062
            D                              N                   P+       
Sbjct: 324  DDDDEENEEEEGGLSKSGKELKKLLGKSNGLNESDEEDDDDSDDDEETNFGPITNSKQKD 383

Query: 1063 XXXXXXXXXXXXXXSSAPTTASPNGSKATKGKRKSGNEDTKPNTGAATKKIKTEAQDTKV 1242
                          + + ++     +K +KGKRK  + D K  + +  KK+KTE++    
Sbjct: 384  ATKEEPVESTPPKPAPSVSSRGTPSAKPSKGKRKLNDGDAKKPSSSVQKKVKTESE---- 439

Query: 1243 SGSSAVKDEMPAS-AKGNNPTKPAS-QSPNKSTTSQATGAVTEDEVRAFLKQVAPISTQE 1416
            S SS+VK+E   S +K N PTK    +S +    S ATG VTEDE+R  L +   ++TQ+
Sbjct: 440  SKSSSVKEEKSNSISKSNAPTKAVKPESTSAPAASAATGPVTEDEIRGVLMEKKQVTTQD 499

Query: 1417 LVARFKARLKAPEDKQSFAAILKKISRIQKTANG-NLVVLREK 1542
            LV+RFKARLK  EDK +FA IL+KIS+IQK A   N VVLRE+
Sbjct: 500  LVSRFKARLKTKEDKNAFAEILRKISKIQKNAGSQNFVVLRER 542