BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00009802
         (1105 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY33970.1| Homeodomain-like superfamily protein, putative is...   209   2e-51
ref|XP_002283159.1| PREDICTED: uncharacterized protein LOC100253...   207   8e-51
emb|CBI16094.3| unnamed protein product [Vitis vinifera]              205   2e-50
ref|XP_004145284.1| PREDICTED: uncharacterized protein LOC101216...   202   1e-49
ref|XP_004507164.1| PREDICTED: two-component response regulator ...   202   3e-49
ref|XP_003537977.1| PREDICTED: transcription factor LUX-like iso...   201   4e-49
gb|ESW04037.1| hypothetical protein PHAVU_011G062100g [Phaseolus...   201   6e-49
ref|XP_006846291.1| hypothetical protein AMTR_s00012p00251530 [A...   197   5e-48
gb|EMJ06781.1| hypothetical protein PRUPE_ppa008837mg [Prunus pe...   197   8e-48
ref|XP_003606714.1| Two-component response regulator ARR1 [Medic...   195   2e-47
ref|XP_006424879.1| hypothetical protein CICLE_v10028658mg [Citr...   193   1e-46
gb|EXC10705.1| Two-component response regulator [Morus notabilis]     192   2e-46
ref|NP_190248.1| transcription factor LUX [Arabidopsis thaliana]...   188   4e-45
ref|XP_006418876.1| hypothetical protein EUTSA_v10002605mg [Eutr...   188   4e-45
ref|NP_001190022.1| transcription factor LUX [Arabidopsis thalia...   188   4e-45
ref|XP_006291467.1| hypothetical protein CARUB_v10017603mg [Caps...   187   6e-45
dbj|BAH20438.1| AT3G46640 [Arabidopsis thaliana]                      187   8e-45
ref|XP_002313898.2| hypothetical protein POPTR_0009s03990g [Popu...   186   1e-44
ref|XP_002875796.1| hypothetical protein ARALYDRAFT_485038 [Arab...   184   4e-44
dbj|BAE16280.1| NbPCL1 [Nicotiana benthamiana]                        182   2e-43

>gb|EOY33970.1| Homeodomain-like superfamily protein, putative isoform 1 [Theobroma
           cacao] gi|508786715|gb|EOY33971.1| Homeodomain-like
           superfamily protein, putative isoform 1 [Theobroma
           cacao]
          Length = 365

 Score =  209 bits (531), Expect = 2e-51
 Identities = 124/255 (48%), Positives = 157/255 (61%), Gaps = 16/255 (6%)
 Frame = -3

Query: 977 TSRIKKMEDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVT 798
           T+    ++D D++ E V EWE GLP  +++TPLSQ LI  EL+ AFSISPEP +T +DV 
Sbjct: 28  TATAAVVDDDDDDEERVLEWEMGLPNTDDLTPLSQSLIPPELASAFSISPEPRRTTLDVN 87

Query: 797 RASHNTLSSLRRHNSAPAKTMLNPDGISATEPNND----------EDIG-----GAQTVP 663
           RASH+TLSSLR   S  + T  N +  +    NN+          E +G     G+ + P
Sbjct: 88  RASHSTLSSLRSTGSHSSTTNNNNNNNNNNNNNNNFRSFNDPMVVEPVGDGSGSGSGSDP 147

Query: 662 RDNKVESHAKNAANKCXXXXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHK 483
           +  +    A+ A +                      + +ED S R LKR RLVWTP+LHK
Sbjct: 148 KKMRKMDIAEEADSAVRTT-----------------ENSEDPSARTLKRPRLVWTPQLHK 190

Query: 482 RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADP 306
           RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S++G   +D 
Sbjct: 191 RFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQ 250

Query: 305 IFSSSPKFNPFHKDG 261
           +F+S+P     H+ G
Sbjct: 251 LFASTPVPQSLHEGG 265


>ref|XP_002283159.1| PREDICTED: uncharacterized protein LOC100253567 [Vitis vinifera]
          Length = 311

 Score =  207 bits (526), Expect = 8e-51
 Identities = 131/306 (42%), Positives = 163/306 (53%), Gaps = 3/306 (0%)
 Frame = -3

Query: 935 EGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHN 756
           E V EWE GLP  +++TPLSQ LI  EL+ AFSI+PEPC+TL++V RAS +T S++R  +
Sbjct: 19  ERVLEWEAGLPAADDLTPLSQPLIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQS 78

Query: 755 SAPAKTMLNPDGISATEPNNDED--IGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXX 582
            + +         S  E  N E   +   +T  RD       K     C           
Sbjct: 79  HSFSSNNFK----SFNEERNREPAVVEPEETGDRDGSGSESRKVRKVDCAEEADSAMRTE 134

Query: 581 XXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 402
                    + N+D S R LKR RLVWTP+LHKRFVDVV HLGIKNAVPKTIMQLMNVEG
Sbjct: 135 ---------NSNDDPSARTLKRPRLVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEG 185

Query: 401 LTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXX 225
           LTRENVASHLQKYRLYLKR QG S++G   +D +F+S+P     H+ G            
Sbjct: 186 LTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHESG----GSVHGNGH 241

Query: 224 XXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPSPCGSGSFGMSMPHSGDRGQ 45
                      PYG  M+ MPV+G++H                G G  GMS P      +
Sbjct: 242 GNGHMSVPIPMPYGQTMMHMPVLGVSH----------------GHGQMGMSGPGGYHGYE 285

Query: 44  MHNDLN 27
            H+  N
Sbjct: 286 SHHPYN 291


>emb|CBI16094.3| unnamed protein product [Vitis vinifera]
          Length = 395

 Score =  205 bits (522), Expect = 2e-50
 Identities = 133/342 (38%), Positives = 172/342 (50%), Gaps = 1/342 (0%)
 Frame = -3

Query: 1049 VNEWHRCYRAYWFCQTQQILTSLRTSRIKKMEDVDEEMEGVAEWERGLPGPEEMTPLSQI 870
            +  W   ++ +    T  +   +R S I   +  D+E   V EWE GLP  +++TPLSQ 
Sbjct: 94   IRGWCMSFQRWVLSSTNSMGEEVRMSDINGGDGGDDER--VLEWEAGLPAADDLTPLSQP 151

Query: 869  LITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHNSAPAKTMLNPDGISATEPNNDE 690
            LI  EL+ AFSI+PEPC+TL++V RAS +T S++R  + + +         S  E  N E
Sbjct: 152  LIPPELASAFSITPEPCRTLLEVNRASQSTFSTIRGQSHSFSSNNFK----SFNEERNRE 207

Query: 689  DIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXXXXXXXXXXGDENEDQSERALKRQR 510
                   +  +N                                   N+D S R LKR R
Sbjct: 208  PAEADSAMRTENS----------------------------------NDDPSARTLKRPR 233

Query: 509  LVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHS 333
            LVWTP+LHKRFVDVV HLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S
Sbjct: 234  LVWTPQLHKRFVDVVGHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLS 293

Query: 332  DDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXXXXXXXXXXXXXPYGNPMVQMPVMG 153
            ++G   +D +F+S+P     H+ G                       PYG  M+ MPV+G
Sbjct: 294  NEGPSSSDHLFASTPVPQSLHESG----GSVHGNGHGNGHMSVPIPMPYGQTMMHMPVLG 349

Query: 152  IAHNSQSAPHGGGLYPSPCGSGSFGMSMPHSGDRGQMHNDLN 27
            ++H                G G  GMS P      + H+  N
Sbjct: 350  VSH----------------GHGQMGMSGPGGYHGYESHHPYN 375


>ref|XP_004145284.1| PREDICTED: uncharacterized protein LOC101216423 [Cucumis sativus]
           gi|449470904|ref|XP_004153145.1| PREDICTED:
           uncharacterized protein LOC101205712 [Cucumis sativus]
           gi|449525506|ref|XP_004169758.1| PREDICTED:
           uncharacterized LOC101205712 [Cucumis sativus]
          Length = 336

 Score =  202 bits (515), Expect = 1e-49
 Identities = 127/274 (46%), Positives = 155/274 (56%), Gaps = 1/274 (0%)
 Frame = -3

Query: 935 EGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHN 756
           E V EWE GLP  +++TPLSQ LI  EL+ AFSIS  PC+TLMDV RAS NTLS+LR   
Sbjct: 27  ERVFEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQ 86

Query: 755 SAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXXXX 576
           +       + +   +   +  +D   A  V  D   E  A + + K              
Sbjct: 87  AQA----FSSNNFKSFNDDRTQD-HDAMVVEGDEATERDAGSDSRKLRKVDCAEEADSAL 141

Query: 575 XXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT 396
                  +  +D S R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT
Sbjct: 142 RTD----NSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLT 197

Query: 395 RENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXXXX 219
           RENVASHLQKYRLYLKR QG S++G    D IF+S+P     H+                
Sbjct: 198 RENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPPTLHES------TNSGQANGN 251

Query: 218 XXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGG 117
                    PYG PM+ MPV+G+A +  +  + G
Sbjct: 252 GHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMG 285


>ref|XP_004507164.1| PREDICTED: two-component response regulator ARR2-like isoform X1
           [Cicer arietinum] gi|502148441|ref|XP_004507165.1|
           PREDICTED: two-component response regulator ARR2-like
           isoform X2 [Cicer arietinum]
          Length = 304

 Score =  202 bits (513), Expect = 3e-49
 Identities = 128/299 (42%), Positives = 164/299 (54%), Gaps = 7/299 (2%)
 Frame = -3

Query: 956 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 777
           E+V  + E V EWE+GLP  +++TPLS  LI  EL+ AFSISPEP +TL DV RAS NTL
Sbjct: 3   EEVRTDEERVTEWEKGLPSVQDLTPLSMALIPPELASAFSISPEPHRTLFDVNRASRNTL 62

Query: 776 SSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXX 597
           S LR       +T+ + +     E + + + G      +  K++S  + A          
Sbjct: 63  SILRASGGNHHQTISSTNDDLDEEEDEEIEEGSGSDSRKHRKIDSATEEA---------- 112

Query: 596 XXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQL 417
                          ++  ++E  LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQL
Sbjct: 113 ---------------DSSVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQL 157

Query: 416 MNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXX 240
           MNVEGLTRENVASHLQKYRLYLKR QG S+D    +D +F+S+P     H          
Sbjct: 158 MNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHDSA------N 211

Query: 239 XXXXXXXXXXXXXXXXPYGNP--MVQMPVMGIAH----NSQSAPHGGGLYPSPCGSGSF 81
                           PY  P  M+ MP++G+ H    +S S  H G   P P  + S+
Sbjct: 212 ANGNSHSHHSSVPIPMPYPPPPSMMSMPLIGMPHHGHSHSHSHAHMGMPLPPPSAASSY 270


>ref|XP_003537977.1| PREDICTED: transcription factor LUX-like isoform X1 [Glycine max]
          Length = 323

 Score =  201 bits (511), Expect = 4e-49
 Identities = 132/325 (40%), Positives = 170/325 (52%), Gaps = 17/325 (5%)
 Frame = -3

Query: 962 KMEDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHN 783
           K  + DEE   V EWE GLP   ++TPLSQ LI  EL+ AFSI PEP +TL+DV RAS N
Sbjct: 6   KTSEYDEER--VMEWEAGLPTANDLTPLSQPLIPPELASAFSILPEPHRTLLDVNRASRN 63

Query: 782 TLSSLRRHNSAPAKTMLNPD-----------GISATEPNNDEDIGGAQTVPRDNKVESHA 636
           TLS+LR    +  +   + +           G+   E ++D+  G      +  K++  A
Sbjct: 64  TLSTLRGGGGSVHQAFSSSNNNHNYDGDGDGGVEEEEDDDDDRDGSGPDSRKQRKIDCGA 123

Query: 635 KNAANKCXXXXXXXXXXXXXXXXXXXGDENEDQSER-ALKRQRLVWTPELHKRFVDVVAH 459
              A+                       + E  +ER A+KR RLVWTP+LHKRFVDVVAH
Sbjct: 124 AEEADSAV--------------------QTETSAERTAVKRPRLVWTPQLHKRFVDVVAH 163

Query: 458 LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKF 282
           LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S++G   +D +F+S+P  
Sbjct: 164 LGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSASDQLFASTPVP 223

Query: 281 NPFHKDGPYXXXXXXXXXXXXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPS 102
              H   P                       +G+  + +P+M + +     P     YP 
Sbjct: 224 QSLHDSAPPSNHSNGHGHGHGHSNGRGHGHGHGHGHLSVPMMSMPY---PPPLMSMPYPP 280

Query: 101 PCGS----GSFGMSMPHSGDRGQMH 39
           P  S    G  G+ MP+S      H
Sbjct: 281 PMMSGMPHGHMGIPMPNSSATSAYH 305


>gb|ESW04037.1| hypothetical protein PHAVU_011G062100g [Phaseolus vulgaris]
          Length = 300

 Score =  201 bits (510), Expect = 6e-49
 Identities = 137/316 (43%), Positives = 166/316 (52%), Gaps = 8/316 (2%)
 Frame = -3

Query: 962 KMEDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHN 783
           K  + DEE   V EWE GLP   ++TPLSQ LI  EL+ AFSISPEP +T +DV RAS N
Sbjct: 6   KTSEYDEER--VMEWEVGLPTANDLTPLSQPLIPPELANAFSISPEPHRTTLDVNRASRN 63

Query: 782 TLSSLRRHNSA-PAKTMLNPDGISATEPNNDEDI---GGAQTVPRDNKVESHAKNAANKC 615
           TLS++R   S   A +  N       E + DED    G      +  K+E  A+ A +  
Sbjct: 64  TLSTIRGGGSVHQAFSSSNNHHHEEEEEDEDEDTDRDGSGSDSRKHRKIECVAEEADSAV 123

Query: 614 XXXXXXXXXXXXXXXXXXXGDENEDQSER-ALKRQRLVWTPELHKRFVDVVAHLGIKNAV 438
                                  E+ +ER A+KR RLVWTP+LHKRFVDVVAHLGIKNAV
Sbjct: 124 ---------------------RTENSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAV 162

Query: 437 PKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDG 261
           PKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG S++G   +D +F+S+P     H   
Sbjct: 163 PKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSA 222

Query: 260 P--YXXXXXXXXXXXXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPSPCGSG 87
           P                        PY  PM+ MPV+G+ H                  G
Sbjct: 223 PPSAHSHGHSHGHASAHLPVPMMSMPYPPPMMSMPVLGMPH----------------AHG 266

Query: 86  SFGMSMPHSGDRGQMH 39
             G++MP S      H
Sbjct: 267 HMGITMPTSSATSAYH 282


>ref|XP_006846291.1| hypothetical protein AMTR_s00012p00251530 [Amborella trichopoda]
           gi|548849061|gb|ERN07966.1| hypothetical protein
           AMTR_s00012p00251530 [Amborella trichopoda]
          Length = 287

 Score =  197 bits (502), Expect = 5e-48
 Identities = 115/229 (50%), Positives = 143/229 (62%), Gaps = 1/229 (0%)
 Frame = -3

Query: 941 EMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRR 762
           E + V EWE GLP  E++TPLSQ+LI  EL+ AFSISPE C++++DV RAS NT+S+LRR
Sbjct: 15  EEDHVMEWELGLPRAEDLTPLSQVLIPPELASAFSISPEACRSMLDVNRASQNTVSTLRR 74

Query: 761 HNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXX 582
             + P      P      E             P +   ES A+  +++            
Sbjct: 75  Q-ALPTNLKSLPSFSLQQEHE-----------PTEPATESRARKFSDR---------EAT 113

Query: 581 XXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 402
                    D  ++QS R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLMNVEG
Sbjct: 114 DEIMDSSRPDPVDEQSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 173

Query: 401 LTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGP 258
           LTRENVASHLQKYRLYLKR QG S +G   +D +F+S+P  +   ++ P
Sbjct: 174 LTRENVASHLQKYRLYLKRMQGLSSEGPSSSDHLFASTPVPHSLAREEP 222


>gb|EMJ06781.1| hypothetical protein PRUPE_ppa008837mg [Prunus persica]
          Length = 317

 Score =  197 bits (500), Expect = 8e-48
 Identities = 127/285 (44%), Positives = 156/285 (54%), Gaps = 2/285 (0%)
 Frame = -3

Query: 956 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 777
           +D D+E   V EWE GLP  +++TPLSQ LI  EL+ AFSISPEPC+T +DV RAS  T+
Sbjct: 18  DDGDDETR-VLEWEAGLPSADDLTPLSQPLIPIELASAFSISPEPCRTAVDVNRASQKTV 76

Query: 776 SSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXX 597
           S+LR      A +        + + N  +D+        +N    +A + + K       
Sbjct: 77  STLR----GAAHSQGFSSNYKSFDENRSDDVEPMVVEVDENDRYGNAGSDSRKSRKIDCT 132

Query: 596 XXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQL 417
                         D   D S R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQL
Sbjct: 133 EEADSALRTENFSAD---DTSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQL 189

Query: 416 MNVEGLTRENVASHLQKYRLYLKR-QGHSDD-GAGPADPIFSSSPKFNPFHKDGPYXXXX 243
           MNVEGLTRENVASHLQKYRLYLKR QG S D G   +D +F+S+P     H++       
Sbjct: 190 MNVEGLTRENVASHLQKYRLYLKRMQGLSGDVGPSSSDQLFASTPVPQSLHQESG-GGSS 248

Query: 242 XXXXXXXXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLY 108
                            PY   M+ MPV+G+ H        GG Y
Sbjct: 249 QAGQSHGHGNGQFSFSMPYPPTMMPMPVLGLTHGHGHMGMPGGGY 293


>ref|XP_003606714.1| Two-component response regulator ARR1 [Medicago truncatula]
           gi|357472893|ref|XP_003606731.1| Two-component response
           regulator ARR1 [Medicago truncatula]
           gi|355507769|gb|AES88911.1| Two-component response
           regulator ARR1 [Medicago truncatula]
           gi|355507786|gb|AES88928.1| Two-component response
           regulator ARR1 [Medicago truncatula]
          Length = 312

 Score =  195 bits (496), Expect = 2e-47
 Identities = 132/308 (42%), Positives = 165/308 (53%), Gaps = 11/308 (3%)
 Frame = -3

Query: 956 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 777
           E+V  + E V EWE+GLP   ++TPLS  LI  EL+ AFSISPEP +TL DV RAS NTL
Sbjct: 3   EEVRTDEERVTEWEKGLPNLHDLTPLSMALIPPELASAFSISPEPHRTLFDVNRASRNTL 62

Query: 776 SSLRRHNSAPAKTMLNPD---GISATEPNNDEDIGGAQTVPRDN-KVESHAKNAANKCXX 609
           S LR  NS      +N      I   E + + D  G+ +  R + K++S  +    +   
Sbjct: 63  SLLRS-NSGTITNQINQTMSCEIEDIEEDEEPDRDGSGSDSRKHRKIDSVIEEVEAEA-- 119

Query: 608 XXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKT 429
                              ++  ++   +KR RLVWTP+LHKRFVDVVAHLGIKNAVPKT
Sbjct: 120 -------------------DSAVRTTETIKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKT 160

Query: 428 IMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYX 252
           IMQLMNVEGLTRENVASHLQKYRLYLKR QG S+D    +D +F+S+P     H+     
Sbjct: 161 IMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHETASAN 220

Query: 251 XXXXXXXXXXXXXXXXXXXXPYGNP----MVQMPVMGIAHNSQSAPHG--GGLYPSPCGS 90
                               PY  P    M   P++G+ H+    PHG  G   P P G 
Sbjct: 221 HSNSHSHSHSHSHHSVTIPMPYPPPPSSMMSMPPMIGMGHH----PHGHMGMSLPPPSGG 276

Query: 89  GSFGMSMP 66
            S   S P
Sbjct: 277 SSSYRSHP 284


>ref|XP_006424879.1| hypothetical protein CICLE_v10028658mg [Citrus clementina]
           gi|567864462|ref|XP_006424880.1| hypothetical protein
           CICLE_v10028658mg [Citrus clementina]
           gi|567864464|ref|XP_006424881.1| hypothetical protein
           CICLE_v10028658mg [Citrus clementina]
           gi|568870356|ref|XP_006488371.1| PREDICTED:
           transcription factor LUX-like isoform X1 [Citrus
           sinensis] gi|557526813|gb|ESR38119.1| hypothetical
           protein CICLE_v10028658mg [Citrus clementina]
           gi|557526814|gb|ESR38120.1| hypothetical protein
           CICLE_v10028658mg [Citrus clementina]
           gi|557526815|gb|ESR38121.1| hypothetical protein
           CICLE_v10028658mg [Citrus clementina]
          Length = 378

 Score =  193 bits (490), Expect = 1e-46
 Identities = 114/227 (50%), Positives = 141/227 (62%), Gaps = 5/227 (2%)
 Frame = -3

Query: 953 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 774
           D + + E + EWE GLP   ++TPLSQ LI  EL+ AFSI P PC+T +DV RAS  TLS
Sbjct: 17  DYNGDDERIPEWEMGLPNGTDLTPLSQSLIPPELASAFSILPVPCRTHLDVNRASQTTLS 76

Query: 773 SLR--RHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNK-VESHAKNAANKCXXXX 603
           S+R  R +S  +    N + +     N D  +   +   ++    +S +K+    C    
Sbjct: 77  SIRGSRAHSLSSTDNNNSNNLKTLTENRDPMVTETEEQDQNGSFADSRSKSRRPDCTEEA 136

Query: 602 XXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIM 423
                           + NED S R LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIM
Sbjct: 137 DSALRTD---------NSNEDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIM 187

Query: 422 QLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPAD-PIFSSSP 288
           QLMNVEGLTRENVASHLQKYRLYLKR QG S+D    +D  +F+S+P
Sbjct: 188 QLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDDPSSSDHQLFASTP 234


>gb|EXC10705.1| Two-component response regulator [Morus notabilis]
          Length = 329

 Score =  192 bits (488), Expect = 2e-46
 Identities = 125/303 (41%), Positives = 158/303 (52%), Gaps = 3/303 (0%)
 Frame = -3

Query: 935 EGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHN 756
           E V EWE GLP  +++TPLSQ LI  EL+ AFSISP   +TL+DV +AS +TLSSLR   
Sbjct: 20  ERVLEWEAGLPSVDDLTPLSQPLIPPELASAFSISPVQYRTLLDVNQASEDTLSSLRGIT 79

Query: 755 SAPA--KTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXX 582
            +P   K++      +  E + ++  G      +  K+   A+   +             
Sbjct: 80  QSPNIFKSLGESHESAVVEADENDRDGSGSDSRKSRKIMDCAEEDDSALPVD-------- 131

Query: 581 XXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEG 402
                    +  +D + R LKR RLVWTP LHKRFVDVV HLGIKNAVPKTIMQLMNVEG
Sbjct: 132 ---------NSGDDPAARTLKRPRLVWTPHLHKRFVDVVGHLGIKNAVPKTIMQLMNVEG 182

Query: 401 LTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSPKFNPFHKDGPYXXXXXXXXXX 225
           LTRENVASHLQKYRLYLKR QG S +G   +D +FSS+P     H+              
Sbjct: 183 LTRENVASHLQKYRLYLKRMQGLSTEGPSASDQLFSSTPVPQSLHEFSTASGHSNGHSHG 242

Query: 224 XXXXXXXXXXXPYGNPMVQMPVMGIAHNSQSAPHGGGLYPSPCGSGSFGMSMPHSGDRGQ 45
                          P++ MPV+G+ H      HG G    P G+   G    H G    
Sbjct: 243 NGHFQVPVPIPY--PPVMPMPVLGMTH------HGHGHMGMPVGAPPKGAVGYHHGFESH 294

Query: 44  MHN 36
            H+
Sbjct: 295 HHH 297


>ref|NP_190248.1| transcription factor LUX [Arabidopsis thaliana]
           gi|79314533|ref|NP_001030823.1| transcription factor LUX
           [Arabidopsis thaliana]
           gi|75337463|sp|Q9SNB4.1|PCL1_ARATH RecName:
           Full=Transcription factor LUX; AltName: Full=Protein LUX
           ARRHYTHMO; AltName: Full=Protein PHYTOCLOCK 1
           gi|6523067|emb|CAB62334.1| putative protein [Arabidopsis
           thaliana] gi|30102630|gb|AAP21233.1| At3g46640
           [Arabidopsis thaliana] gi|71067050|dbj|BAE16277.1|
           PHYTOCLOCK 1 [Arabidopsis thaliana]
           gi|110743672|dbj|BAE99673.1| hypothetical protein
           [Arabidopsis thaliana] gi|332644665|gb|AEE78186.1|
           protein phytoclock 1 [Arabidopsis thaliana]
           gi|332644666|gb|AEE78187.1| protein phytoclock 1
           [Arabidopsis thaliana]
          Length = 323

 Score =  188 bits (477), Expect = 4e-45
 Identities = 113/225 (50%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
 Frame = -3

Query: 953 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 774
           DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  TLS
Sbjct: 11  DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLS 70

Query: 773 SLRRHNSAPAKTMLNPDGISATEPNN--DEDIGGAQTVPRDNKVESHAKNAANKCXXXXX 600
           SLR  +S P  +  N         NN  +ED  G+ +   D+K     K   +       
Sbjct: 71  SLRGGSSGPNTSSSN---------NNVEEEDRVGSSSPGSDSK-----KQKTSNGDGDDG 116

Query: 599 XXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQ 420
                             ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQ
Sbjct: 117 GGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQ 176

Query: 419 LMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           LMNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177 LMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 221


>ref|XP_006418876.1| hypothetical protein EUTSA_v10002605mg [Eutrema salsugineum]
           gi|557096804|gb|ESQ37312.1| hypothetical protein
           EUTSA_v10002605mg [Eutrema salsugineum]
          Length = 335

 Score =  188 bits (477), Expect = 4e-45
 Identities = 114/234 (48%), Positives = 141/234 (60%), Gaps = 9/234 (3%)
 Frame = -3

Query: 962 KMEDVDEEMEG--VAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRAS 789
           +M D D   +G  V EWE GLP  E++  LS  LI A L+ AFSI+PE  +T+ DV RAS
Sbjct: 6   RMSDYDVSGDGDRVTEWEMGLPSDEDLASLSHSLIPANLAMAFSITPEKSRTIQDVNRAS 65

Query: 788 HNTLSSLRRHNSAPAKTMLNPD------GISATEPNNDEDIGGAQTVPRDNKVESHAKNA 627
             T SSLR  +S P  +  N +      G++A E    ED  G+ +   D+K +  +   
Sbjct: 66  ETTFSSLRGGSSGPNTSSSNNNSNSFKTGLAAEE----EDRVGSSSPGSDSKKQKTSDGD 121

Query: 626 ANKCXXXXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIK 447
            +                         ED + + LKR RLVWTP+LHKRFVDVVAHLGIK
Sbjct: 122 GD----GGGGVDLSTADVTAEEGDSGTEDPTGKTLKRPRLVWTPQLHKRFVDVVAHLGIK 177

Query: 446 NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKR QG + +G   +D +FSS+P
Sbjct: 178 NAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLTTEGPSTSDKLFSSTP 231


>ref|NP_001190022.1| transcription factor LUX [Arabidopsis thaliana]
           gi|332644667|gb|AEE78188.1| protein phytoclock 1
           [Arabidopsis thaliana]
          Length = 324

 Score =  188 bits (477), Expect = 4e-45
 Identities = 113/225 (50%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
 Frame = -3

Query: 953 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 774
           DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  TLS
Sbjct: 11  DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLS 70

Query: 773 SLRRHNSAPAKTMLNPDGISATEPNN--DEDIGGAQTVPRDNKVESHAKNAANKCXXXXX 600
           SLR  +S P  +  N         NN  +ED  G+ +   D+K     K   +       
Sbjct: 71  SLRGGSSGPNTSSSN---------NNVEEEDRVGSSSPGSDSK-----KQKTSNGDGDDG 116

Query: 599 XXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQ 420
                             ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQ
Sbjct: 117 GGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQ 176

Query: 419 LMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           LMNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177 LMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 221


>ref|XP_006291467.1| hypothetical protein CARUB_v10017603mg [Capsella rubella]
           gi|565467176|ref|XP_006291468.1| hypothetical protein
           CARUB_v10017603mg [Capsella rubella]
           gi|482560174|gb|EOA24365.1| hypothetical protein
           CARUB_v10017603mg [Capsella rubella]
           gi|482560175|gb|EOA24366.1| hypothetical protein
           CARUB_v10017603mg [Capsella rubella]
          Length = 333

 Score =  187 bits (475), Expect = 6e-45
 Identities = 114/228 (50%), Positives = 140/228 (61%), Gaps = 3/228 (1%)
 Frame = -3

Query: 962 KMEDVDEEMEG--VAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRAS 789
           +M D D   +G  V EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS
Sbjct: 6   RMSDYDVSGDGDRVMEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTVQDVNRAS 65

Query: 788 HNTLSSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXX 609
             TLSSLR  +S P  +  N +  +A E    ED  G+ +   D+K +  +    +    
Sbjct: 66  ETTLSSLRSGSSGPNTSSSNNNS-NAVEV---EDRVGSSSPGSDSKKQKTSDGEGD---- 117

Query: 608 XXXXXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKT 429
                                ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKT
Sbjct: 118 -GDGGVDPDAAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKT 176

Query: 428 IMQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           IMQLMNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177 IMQLMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 224


>dbj|BAH20438.1| AT3G46640 [Arabidopsis thaliana]
          Length = 323

 Score =  187 bits (474), Expect = 8e-45
 Identities = 112/225 (49%), Positives = 137/225 (60%), Gaps = 3/225 (1%)
 Frame = -3

Query: 953 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 774
           DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  TLS
Sbjct: 11  DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLS 70

Query: 773 SLRRHNSAPAKTMLNPDGISATEPNN--DEDIGGAQTVPRDNKVESHAKNAANKCXXXXX 600
           SLR  +S P  +  N         NN  +ED  G+ +   D+K     K   +       
Sbjct: 71  SLRGGSSGPNTSSSN---------NNVEEEDRVGSSSPGSDSK-----KQKTSNGDGDDG 116

Query: 599 XXXXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQ 420
                             ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQ
Sbjct: 117 GGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQ 176

Query: 419 LMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           +MNVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 177 VMNVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 221


>ref|XP_002313898.2| hypothetical protein POPTR_0009s03990g [Populus trichocarpa]
           gi|550330983|gb|EEE87853.2| hypothetical protein
           POPTR_0009s03990g [Populus trichocarpa]
          Length = 349

 Score =  186 bits (472), Expect = 1e-44
 Identities = 113/227 (49%), Positives = 140/227 (61%), Gaps = 4/227 (1%)
 Frame = -3

Query: 956 EDVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTL 777
           E+++ + E VA WE GLP P+++TPLSQ LI  EL+ AFSI PEP +T +DV RA   TL
Sbjct: 17  ENINGDDERVAVWEIGLPTPDDLTPLSQTLIPPELASAFSIFPEPHRTPLDVNRACQTTL 76

Query: 776 SSLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXX 597
           S+LR      A + +N    + T     + I     V  DNK  +  ++ +         
Sbjct: 77  SNLR--GQLNALSSINFKSFNETTGQTHDPI----VVDLDNKTGAVDRDGSGS-EARKLR 129

Query: 596 XXXXXXXXXXXXXGDENEDQSE---RALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTI 426
                         +  ED S    R LKR RLVWTP+LHKRFVDVV+HLGIKNAVPKTI
Sbjct: 130 RVDSEEEDSALRTDNSAEDPSSAAARTLKRPRLVWTPQLHKRFVDVVSHLGIKNAVPKTI 189

Query: 425 MQLMNVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           MQLMNVEGLTRENVASHLQKYRLYLKR QG S +G   +D +F+S+P
Sbjct: 190 MQLMNVEGLTRENVASHLQKYRLYLKRMQGLSSEGPSASDQLFASTP 236


>ref|XP_002875796.1| hypothetical protein ARALYDRAFT_485038 [Arabidopsis lyrata subsp.
           lyrata] gi|297321634|gb|EFH52055.1| hypothetical protein
           ARALYDRAFT_485038 [Arabidopsis lyrata subsp. lyrata]
          Length = 325

 Score =  184 bits (468), Expect = 4e-44
 Identities = 109/223 (48%), Positives = 135/223 (60%), Gaps = 1/223 (0%)
 Frame = -3

Query: 953 DVDEEMEGVAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLS 774
           DV  + + V+EWE GLP  E++  LS  LI   L+ AFSI+PE  +T+ DV RAS  T S
Sbjct: 11  DVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTFS 70

Query: 773 SLRRHNSAPAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXX 594
           SLR  +S    +  N +  +  E    ED  G+ +   D+K +  +              
Sbjct: 71  SLRGGSSGQNTSSSNNNSNAVEE----EDRVGSSSPGSDSKKQKISDGGGG-------GD 119

Query: 593 XXXXXXXXXXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLM 414
                           ED S + LKR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLM
Sbjct: 120 GGVDPDAAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLM 179

Query: 413 NVEGLTRENVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           NVEGLTRENVASHLQKYRLYLKR QG +++G   +D +FSS+P
Sbjct: 180 NVEGLTRENVASHLQKYRLYLKRMQGLTNEGPSASDKLFSSTP 222


>dbj|BAE16280.1| NbPCL1 [Nicotiana benthamiana]
          Length = 312

 Score =  182 bits (463), Expect = 2e-43
 Identities = 108/215 (50%), Positives = 131/215 (60%), Gaps = 1/215 (0%)
 Frame = -3

Query: 929 VAEWERGLPGPEEMTPLSQILITAELSCAFSISPEPCKTLMDVTRASHNTLSSLRRHNSA 750
           + EWE GLP  +++TPLSQ LI  EL+ AF ISPEP KT+ DV RAS NT SSLR   S 
Sbjct: 20  ILEWEDGLPSLDDITPLSQALIPPELASAFKISPEPAKTMTDVNRASENTFSSLR--GSG 77

Query: 749 PAKTMLNPDGISATEPNNDEDIGGAQTVPRDNKVESHAKNAANKCXXXXXXXXXXXXXXX 570
           P + +     +S+ E  +  D    + +  +      A      C               
Sbjct: 78  PLQQL---QILSSPETEHGSDPRKTRRIDPEMLEADSALPRNENCGGGDD---------- 124

Query: 569 XXXXGDENEDQSERALKRQRLVWTPELHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRE 390
                  N+  S+   KR RLVWTP+LHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRE
Sbjct: 125 -----SNNKSASKTLNKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRE 179

Query: 389 NVASHLQKYRLYLKR-QGHSDDGAGPADPIFSSSP 288
           NVASHLQKYRLYLKR QG S++G   +D +F+ +P
Sbjct: 180 NVASHLQKYRLYLKRMQGLSNEGPTSSDHLFAFTP 214