BLASTX nr result
ID: Ephedra27_contig00009036
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Ephedra27_contig00009036 (2371 letters) Database: ./nr 37,332,560 sequences; 13,225,080,153 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 480 e-132 ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr... 452 e-124 ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein... 450 e-123 ref|XP_002305685.1| plus-3 domain-containing family protein [Pop... 450 e-123 ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp.... 450 e-123 ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 449 e-123 ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutr... 447 e-123 ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th... 447 e-123 gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 447 e-122 gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana] 447 e-122 ref|XP_002316628.2| plus-3 domain-containing family protein [Pop... 441 e-121 ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein... 441 e-121 ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein... 441 e-121 ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 440 e-120 gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus... 440 e-120 ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps... 439 e-120 ref|XP_004302289.1| PREDICTED: RNA polymerase-associated protein... 434 e-118 gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 433 e-118 ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein... 430 e-117 gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 427 e-117 >ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda] gi|548857220|gb|ERN15034.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda] Length = 624 Score = 480 bits (1235), Expect = e-132 Identities = 290/635 (45%), Positives = 381/635 (60%), Gaps = 18/635 (2%) Frame = +3 Query: 267 DLENLLLECAGRSMSLDGHQDNSKTR-KRRPSFSDSENGSDSNKYSEPDDSDQDDEMPNL 443 DLE+LLLE AGR+ S G + S+T+ KRR S S++GSD SE DD P+ Sbjct: 5 DLEHLLLEAAGRT-STSGRKKPSQTQPKRRHEGSYSDDGSDPKYESEDDDDSDGPGYPSR 63 Query: 444 KHS--KMPLKKRFET---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 590 K S ++PLKKRFET G Sbjct: 64 KPSGSQVPLKKRFETADKDDMRGKGDRDGGSDDSDSGLSVGSDLYKDENDREELSRMTEL 123 Query: 591 EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR 770 EREM+L +RA++RD+ +K A + D +S RSS + Sbjct: 124 EREMILTDRADRRDNLMRMKKAERQ---GDKSRSTGKELMAPPQARGRSSAKSDRMANKD 180 Query: 771 ALTELIAKKRKAQDTDSQRRR----NDKASKDSSPXXXXXXXXXXXXXXXXXXXHEGSPR 938 ALTEL+AK ++ S+R+ +KA+ +SP E S Sbjct: 181 ALTELLAKMQRKSRNRSERQDLMVVRNKAAAAASPVSDSPPSSGVRSSSDG---REVSVE 237 Query: 939 GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRLGIG-EKHG 1115 + + S ++ DI ITI+RS+LAKWF+EPFFE I GCFVR+GIG + G Sbjct: 238 LGESDEDEGPTSGSEHPTFEDIKGITIRRSRLAKWFLEPFFEEAIVGCFVRVGIGTSRSG 297 Query: 1116 RRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVSDSAPDEL 1295 + YRLC V+NVDAS DP ++Y FE R T KYLNC WG E++AARWQM R+SDSAP E Sbjct: 298 QSIYRLCMVRNVDAS--DPDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLEK 355 Query: 1296 EYIDLREEMERKGGKMIRTDEVEEKLTQLEQINN-YVYSAETVKQMLQEKKMASQRPSNI 1472 E+++ E+ER GG+M +V +K ++++++ +VYSA TVKQMLQEKK AS RPSNI Sbjct: 356 EFLEWVREVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNI 415 Query: 1473 AAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMNRKNRAE 1652 AAEK++LRKE+ AES D EAER+R +L+ELE +S QSK K+ KA+MLAEMNR+NRAE Sbjct: 416 AAEKDRLRKEMELAESRLDHAEAERVRARLQELENLSQQSKKKDAKAVMLAEMNRRNRAE 475 Query: 1653 NFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANEAVPEAEKQPDEAKVE 1832 NF+ ASE K N +LKAGEAGYDPFSRRWTRS NYY SK E V E EA+ Sbjct: 476 NFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPEGGGEVVKE------EAETA 529 Query: 1833 ETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARR 2012 T+ ++ A + GKL++T+AP G++ H+LH+FEL +S L R+GG QGA AFMAR+ Sbjct: 530 ATKAALEAAADAGKLVDTKAPVDEGTESHSLHDFELPISLAGLQRFGGPQGAQLAFMARK 589 Query: 2013 QQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 Q++EA G+ +P NDG+RHSLTL+V DYKRRRGL+ Sbjct: 590 QRIEATIGVRVPENDGRRHSLTLSVSDYKRRRGLV 624 >ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina] gi|557524836|gb|ESR36142.1| hypothetical protein CICLE_v10028000mg [Citrus clementina] Length = 643 Score = 452 bits (1163), Expect = e-124 Identities = 283/653 (43%), Positives = 360/653 (55%), Gaps = 34/653 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ S ++ ++ + KRR GS S S DDSD + + Sbjct: 1 MADLENLLLEAAGRTNSAGRNRHSASSSKRR------REGSYSGSDSRDDDSDDNRGYGS 54 Query: 441 LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----FERE 599 K S ++PLKKR + ERE Sbjct: 55 RKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDSSNESDDDNHGQMTELERE 114 Query: 600 MLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR--A 773 M++ ER +K+ K L R S +S R R + R AD+ A+ A Sbjct: 115 MMIFERDDKKVDKNLRDKFRSRREER-STRSTKETPPLPSSRSARLAARSADRAAAKDDA 173 Query: 774 LTELIAKKRKAQDTDSQRRRNDKASKDS-------------SPXXXXXXXXXXXXXXXXX 914 L EL AK+ K QD ++ RR D + S +P Sbjct: 174 LNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESRSHS 233 Query: 915 XXHEGSPRGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRL 1094 + G SG +Y DI +ITI+RSKLAKWFMEPFFE +I GCFVR+ Sbjct: 234 DDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 293 Query: 1095 GIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVS 1274 GIG YRLC V+NVDA T+P + Y E R T KYLN WG+ES+AARWQM VS Sbjct: 294 GIGRSKNGPIYRLCMVRNVDA--TEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVS 351 Query: 1275 DSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMAS 1454 DS P E E+ E+ER GG+M +V EK +++IN +VYSA TVKQMLQEKK AS Sbjct: 352 DSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQMLQEKKSAS 411 Query: 1455 QRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMN 1634 RP N+AAEK++LR+EL A+S D + ERI+ +L+ELE S SK K+ KA+ LAEMN Sbjct: 412 SRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELEA-SRDSKVKDAKAIRLAEMN 470 Query: 1635 RKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANEAVPEAEKQ- 1811 RKNR ENF+ ASE KR N +LKAGEAGYDPFSRRWTRS NYY SK A +K Sbjct: 471 RKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKNG 530 Query: 1812 -PDEAKVEE----------TEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1958 P A EE TE ++ A GKL++T AP +G++ + LH+FELD+S + Sbjct: 531 VPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNA 590 Query: 1959 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 L ++GG QG A FMAR+Q++EA G +P NDG+RH+LTLTV DYKRRRGL+ Sbjct: 591 LKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRRGLL 643 >ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1 [Citrus sinensis] gi|568867309|ref|XP_006486981.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2 [Citrus sinensis] Length = 643 Score = 450 bits (1158), Expect = e-123 Identities = 282/653 (43%), Positives = 360/653 (55%), Gaps = 34/653 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ S ++ ++ + KRR GS S S DDSD + + Sbjct: 1 MADLENLLLEAAGRTNSAGRNRHSASSSKRR------REGSYSGSDSRDDDSDDNRGYGS 54 Query: 441 LKHS--KMPLKKRFET-----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFERE 599 K S ++PLKKR + ERE Sbjct: 55 RKPSGSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDSSNESDDDNHGQMTELERE 114 Query: 600 MLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADKGKAR--A 773 M++ ER +K+ K L R S +S R R + R AD+ A+ A Sbjct: 115 MMIFERDDKKVDKNLRDKFRSRREER-STRSTKETPPLPSSRSARLAARSADRAAAKDDA 173 Query: 774 LTELIAKKRKAQDTDSQRRRNDKASKDS-------------SPXXXXXXXXXXXXXXXXX 914 L EL AK+ K QD ++ RR D + S +P Sbjct: 174 LNELRAKRLKQQDPEAHRRLRDASRGGSGSRVLSPVKRKAFTPAGLSSSSQSESESRSHS 233 Query: 915 XXHEGSPRGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGCFVRL 1094 + G SG +Y DI +ITI+RSKLAKWFMEPFFE +I GCFVR+ Sbjct: 234 DDEGSTGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRV 293 Query: 1095 GIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQMIRVS 1274 GIG YRLC V+NVDA T+P + Y E R T KYLN WG+ES+AARWQM VS Sbjct: 294 GIGRSKNGPIYRLCMVRNVDA--TEPDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVS 351 Query: 1275 DSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEKKMAS 1454 DS P E E+ E+ER G+M +V EK +++IN +VYSA TVKQMLQEKK AS Sbjct: 352 DSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQMLQEKKSAS 411 Query: 1455 QRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALMLAEMN 1634 RP N+AAEK++LR+EL A+S D+ + ERI+ +L+ELE S SK K+ KA+ LAEMN Sbjct: 412 SRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEA-SRDSKVKDAKAIRLAEMN 470 Query: 1635 RKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANEAVPEAEKQ- 1811 RKNR ENF+ ASE KR N +LKAGEAGYDPFSRRWTRS NYY SK A +K Sbjct: 471 RKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAEANGDKNG 530 Query: 1812 -PDEAKVEE----------TEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1958 P A EE TE ++ A GKL++T AP +G++ + LH+FELD+S + Sbjct: 531 VPGGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNA 590 Query: 1959 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 L ++GG QG A FMAR+Q++EA G +P NDG+RH+LTLTV DYKRRRGL+ Sbjct: 591 LKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRRGLL 643 >ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa] gi|222848649|gb|EEE86196.1| plus-3 domain-containing family protein [Populus trichocarpa] Length = 662 Score = 450 bits (1158), Expect = e-123 Identities = 284/671 (42%), Positives = 367/671 (54%), Gaps = 52/671 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDN---SKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDE 431 MADLENLLLE AGR+ ++++ S+ RKR S+SD GSDS DDSD D Sbjct: 1 MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDG--GSDSRD----DDSDDDRG 54 Query: 432 MPNLKHS--KMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXX 557 N K S ++PLKKR ET G Sbjct: 55 YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114 Query: 558 XXXXXXXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRS 737 +RE++LA+RA+K+ K L + + +S R +RS Sbjct: 115 DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRS 174 Query: 738 SVRGADKGKAR--ALTELIAKKRKAQDTDSQRRRND--KASKDSSPXXXXXXXXXXXXXX 905 S R AD+ A+ AL EL AK+ K QD ++ R+ D + S S Sbjct: 175 SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASL 234 Query: 906 XXXXXHEGSPR----------GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEP 1055 GS G S +Y DI +ITI+R+KLAKWFMEP Sbjct: 235 SSSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEP 294 Query: 1056 FFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGD 1235 +FE +I GCFVR+GIG YRLC V+NVDA+ +P K Y E ++T+KYLN WG Sbjct: 295 WFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAA--EPDKPYKLENKSTYKYLNVTWGA 352 Query: 1236 ESNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAE 1415 +++AARWQM VSDS P E EY E+E GG++ ++ EK + + N +VYSA Sbjct: 353 DTSAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAA 412 Query: 1416 TVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSK 1595 TVKQMLQEKK AS RP N+AAEK++LR+EL A+S D+ E ERI ++ ELE S +K Sbjct: 413 TVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEA-SRHAK 471 Query: 1596 NKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----- 1760 K+ KA+ LAEMNRKNR ENFR ASE K N LKAGEAGYDPFSRRWTRS NYY Sbjct: 472 VKDAKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPA 531 Query: 1761 ------ASKVSNANEAVPEAEKQP------DEAKVEETEKDMKVAVEEGKLINTEAPPCI 1904 A+K+S ANE V A EA V TE ++ A + GKL++T AP Sbjct: 532 EADDPVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQ 591 Query: 1905 GSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLT 2084 G++ + +H+FEL++S L +GG QGA A FMAR+Q++EA G +P NDG+RH+LTLT Sbjct: 592 GTESNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLT 651 Query: 2085 VDDYKRRRGLM 2117 V DYKRRRGL+ Sbjct: 652 VGDYKRRRGLL 662 >ref|XP_002888111.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata] gi|297333952|gb|EFH64370.1| At1g61040/T7P1_17 [Arabidopsis lyrata subsp. lyrata] Length = 643 Score = 450 bits (1157), Expect = e-123 Identities = 284/653 (43%), Positives = 358/653 (54%), Gaps = 34/653 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 M DLENLLLE AGR+ S + +R+R S+SD SDS DDSD+D + Sbjct: 1 MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGS--SDSR-----DDSDEDRGYAS 53 Query: 441 LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 572 K S ++PLKKR E Sbjct: 54 RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113 Query: 573 XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 752 F+REM+LAERA+K+ K + + + S R +RSS R A Sbjct: 114 AGMTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSA 173 Query: 753 DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 911 D+ A+ AL EL AK+ K QD + R+ D + S+D S Sbjct: 174 DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSMKRKPLASSNLSSSSQ 233 Query: 912 XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 1082 S G+ G S ++ D+ +ITI+RSKLAKW MEPFFE +I GC Sbjct: 234 SDSDSRSQSDDEGSNAGMLDSDDDRSDVPTFEDVKEITIRRSKLAKWLMEPFFEELIVGC 293 Query: 1083 FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1262 FVR+GIG YRLC VKNVDA TDP K Y E + T KYLN WG+E++AARWQM Sbjct: 294 FVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 351 Query: 1263 IRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1442 +SD P E EY E+ER G+M ++ EK +++IN++VYSAETVKQMLQEK Sbjct: 352 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRINSFVYSAETVKQMLQEK 411 Query: 1443 KMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALML 1622 K AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL L Sbjct: 412 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDA-SRNKKGVDKKALKL 470 Query: 1623 AEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANEA 1790 AEMN+KNRAENF+ ASE K +A+LKAGEAGYDPFSRRWTRS NYY K NE Sbjct: 471 AEMNKKNRAENFKNASEVKSISASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENET 530 Query: 1791 VPEAEKQPDEAK----VEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1958 A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL LS Sbjct: 531 AVAAAVETNGADVGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLTA 590 Query: 1959 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+ Sbjct: 591 LQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643 >ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis] gi|223541691|gb|EEF43239.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis] Length = 660 Score = 449 bits (1156), Expect = e-123 Identities = 280/665 (42%), Positives = 365/665 (54%), Gaps = 46/665 (6%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ + +++ +RR S S+ GSDS DD P+ Sbjct: 1 MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60 Query: 441 LKHSKMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 572 S++PLKKR + Sbjct: 61 --GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKL 118 Query: 573 XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 752 EREM+L+ERA+K+ K L + + + +S R +R+S R A Sbjct: 119 AQMSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSA 178 Query: 753 DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDS-----SPXXXXXXXXXXXXXXXX 911 D+ A+ AL EL A++ K QD ++ R+ D + + S SP Sbjct: 179 DRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASLSSSSS 238 Query: 912 XXXH------EGSPR-GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESI 1070 EGS G S ++ DI +ITI+RSKLAKWFMEP+FE + Sbjct: 239 ESESRSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFEEL 298 Query: 1071 IEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAA 1250 I GCFVR+GIG YRLC V+NVDA+ DP + Y E + T+KYLN WG+ES+AA Sbjct: 299 IVGCFVRVGIGRSKSGPIYRLCLVRNVDAA--DPDRPYKLENKTTYKYLNVIWGNESSAA 356 Query: 1251 RWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQM 1430 RWQM +SDSAP E EY E+ER GG+M ++ EK + + N +VYSA TVKQM Sbjct: 357 RWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQM 416 Query: 1431 LQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEK 1610 LQEKK AS RP N+AAEK++LR+EL A+S +D E ERIR +++ELE S Q++ K+ K Sbjct: 417 LQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEA-SRQTQGKDAK 475 Query: 1611 ALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANEA 1790 A+ LAEMNRKNRAENFR ASE K N +LKAGEAGYDPFSRRWTRS NYY SK + + A Sbjct: 476 AIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAA 535 Query: 1791 ----------VPEAEKQPD------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHA 1922 V A K EA + T ++ A + GKL++T AP G++ + Sbjct: 536 AATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNT 595 Query: 1923 LHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKR 2102 LHNFEL +S L ++GGAQGA A FMAR+Q++EA G + ND KRH LTLTV DYKR Sbjct: 596 LHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYKR 655 Query: 2103 RRGLM 2117 RRGL+ Sbjct: 656 RRGLL 660 >ref|XP_006392066.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum] gi|557088572|gb|ESQ29352.1| hypothetical protein EUTSA_v10023338mg [Eutrema salsugineum] Length = 644 Score = 447 bits (1151), Expect = e-123 Identities = 283/652 (43%), Positives = 354/652 (54%), Gaps = 33/652 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 M DL++LLLE AGR+ + + + RR S S+ GSDS DDSD++ + Sbjct: 1 MVDLDDLLLEAAGRTNAPGRSRHSHPPSSRRREGSYSDGGSDSR-----DDSDEERGYAS 55 Query: 441 LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 572 K S ++PLKKR E Sbjct: 56 RKPSGSQVPLKKRLEAEREDRAARDEAGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 115 Query: 573 XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 752 F+REM+LAERA+K+ K + + + S R +RSS R A Sbjct: 116 AGMTEFQREMILAERADKKGDKNFTEKLRSKREKEKTPVSKKETQPLPASRGVRSSARSA 175 Query: 753 DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 911 D+ A+ AL EL AK+ K Q+ S R+ D + S+D S Sbjct: 176 DRAAAKDDALNELRAKRMKQQEPASLRKLRDASKGGSGSRDFSSMKRKPLASSNLSNSSQ 235 Query: 912 XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 1082 S G+ G S ++ DI ITI+RSKLAKW MEPFFE +I GC Sbjct: 236 SDSDSRSQSDDEGSNGGMVDSDDDRSDVPTFEDIKDITIRRSKLAKWLMEPFFEELIVGC 295 Query: 1083 FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1262 FVR+GIG YRLC VKNVDA TDP K Y E + T KYLNC WG ES+AARWQM Sbjct: 296 FVRVGIGRSKNGPIYRLCMVKNVDA--TDPDKTYKLENKTTHKYLNCIWGHESSAARWQM 353 Query: 1263 IRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1442 +SD P E EY E+ER G+M ++ EK +++IN++VYSAETVKQMLQEK Sbjct: 354 AMISDGYPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFVYSAETVKQMLQEK 413 Query: 1443 KMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALML 1622 K AS RP NIAAEK++LRKEL A+ D+ ERI+ K+++LE S + K ++KAL L Sbjct: 414 KSASVRPMNIAAEKDRLRKELEVAQIKNDEAGVERIKAKIKQLEA-SREKKEVDKKALKL 472 Query: 1623 AEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASK-------VSNA 1781 AEMN+KNRAENF+ ASE K A+LKAGEAGYDPFSRRWTRS NYY K + A Sbjct: 473 AEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKRKEGGDTEATA 532 Query: 1782 NEAVPEAEKQPDEAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDLL 1961 AV E VE TE ++ A + GKLI+T AP G++ + LHNFEL LS L Sbjct: 533 AAAVETNGAAAGENGVEATEAALEAAADAGKLIDTRAPIGQGAEHNLLHNFELPLSLTAL 592 Query: 1962 NRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+ Sbjct: 593 QKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 644 >ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana] gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein; 78902-80833 [Arabidopsis thaliana] gi|332195649|gb|AEE33770.1| Paf1C-like transcription factor [Arabidopsis thaliana] Length = 643 Score = 447 bits (1151), Expect = e-123 Identities = 282/653 (43%), Positives = 357/653 (54%), Gaps = 34/653 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 M DLENLLLE AGR+ S + +R+R S+SD SDS DDSD+D + Sbjct: 1 MGDLENLLLEAAGRTNSAGRSRHPPSSRRREGSYSDGS--SDSR-----DDSDEDRGYAS 53 Query: 441 LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 572 K S ++PLKKR E Sbjct: 54 RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113 Query: 573 XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 752 F+REM+L+ERA+K+ K + + + S R +RSS R A Sbjct: 114 AGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSA 173 Query: 753 DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 911 D+ A+ AL EL AK+ K QD + R+ D + S+D S Sbjct: 174 DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQ 233 Query: 912 XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 1082 S G+ G S ++ D+ ++TI+RSKLAKW MEPFFE +I GC Sbjct: 234 SDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGC 293 Query: 1083 FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1262 FVR+GIG YRLC VKNVDA TDP K Y E + T KYLN WG+E++AARWQM Sbjct: 294 FVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 351 Query: 1263 IRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1442 +SD P E EY E+ER G+M ++ EK +++ N++VYSAETVKQMLQEK Sbjct: 352 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEK 411 Query: 1443 KMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALML 1622 K AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL L Sbjct: 412 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA-SRNKKGVDKKALKL 470 Query: 1623 AEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANEA 1790 AEMN+KNRAENF+ ASE K A+LKAGEAGYDPFSRRWTRS NYY K NEA Sbjct: 471 AEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENEA 530 Query: 1791 VPEAEKQPDEAK----VEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1958 A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL LS Sbjct: 531 AVAAAVETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLTA 590 Query: 1959 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+ Sbjct: 591 LQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643 >gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao] gi|508781058|gb|EOY28314.1| PAF1 complex component isoform 1 [Theobroma cacao] Length = 660 Score = 447 bits (1150), Expect = e-122 Identities = 278/670 (41%), Positives = 366/670 (54%), Gaps = 51/670 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ + ++ + +RR S S+ GSDS DDSD D + Sbjct: 1 MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRD----DDSDDDHGYAS 56 Query: 441 LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 590 K S ++PLKKR + Sbjct: 57 RKPSGSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRR 116 Query: 591 --------EREMLLAERAEKRDSKQL---IKSAAERHPPSDSKKSXXXXXXXXXYREMRS 737 ERE++L+ERA+KR K+ I+S E PS S+K R +RS Sbjct: 117 KLAQMTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSS---RGVRS 173 Query: 738 SVRGADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXX 911 S R AD+ A+ AL EL AK+ K QD ++ R+ D + S Sbjct: 174 SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSSGSRGLSPVKRKPFTASSL 233 Query: 912 XXXHEGSPRGNKRGKXXXXXXXSGAA--------------SYADICKITIKRSKLAKWFM 1049 + + G ++ DI +ITI+RSKLAKWFM Sbjct: 234 SSSSQSDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFM 293 Query: 1050 EPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFW 1229 EPFFE +I GC+VR+GIG YRLC V+NVDA T+P++ Y E + T+KYLN W Sbjct: 294 EPFFEELIVGCYVRVGIGRSKSGPIYRLCMVRNVDA--TEPERTYKLENKTTYKYLNVVW 351 Query: 1230 GDESNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYS 1409 G+ES+AARWQM +SDS P E E+ L E+ER GG+M +V EK L++ +VYS Sbjct: 352 GNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYS 411 Query: 1410 AETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQ 1589 A TVKQMLQEKK S RP NIAAEK++LR++L A+S D+ E ERI+M+L++LE S Q Sbjct: 412 AATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEA-SRQ 470 Query: 1590 SKNKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASK 1769 ++ K+ KA+ LAEMNRKNRAENF+ ASE K N LKAGEAGYDPFSRRWTRS NYY +K Sbjct: 471 AQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAK 530 Query: 1770 VSNANEAV--------------PEAEKQPDEAKVEETEKDMKVAVEEGKLINTEAPPCIG 1907 A+ A + EA T ++ A GKL++T AP G Sbjct: 531 PPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEG 590 Query: 1908 SKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTV 2087 ++ + LH+FE+ +S + L R+GG QGA A FMAR+Q++EA G +P NDG+RH+LTLTV Sbjct: 591 TESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTV 650 Query: 2088 DDYKRRRGLM 2117 DYKRRRGL+ Sbjct: 651 SDYKRRRGLL 660 >gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana] Length = 643 Score = 447 bits (1150), Expect = e-122 Identities = 282/653 (43%), Positives = 356/653 (54%), Gaps = 34/653 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 M DLENLLLE AGR+ S +R+R S+SD SDS DDSD+D + Sbjct: 1 MGDLENLLLEAAGRTNSAGRSSHPPSSRRREGSYSDGS--SDSR-----DDSDEDRGYAS 53 Query: 441 LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 572 K S ++PLKKR E Sbjct: 54 RKPSGSQVPLKKRLEAEREDRAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 113 Query: 573 XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 752 F+REM+L+ERA+K+ K + + + S R +RSS R A Sbjct: 114 AGMTEFQREMILSERADKKGDKNFTEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSA 173 Query: 753 DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 911 D+ A+ AL EL AK+ K QD + R+ D + S+D S Sbjct: 174 DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQ 233 Query: 912 XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 1082 S G+ G S ++ D+ ++TI+RSKLAKW MEPFFE +I GC Sbjct: 234 SDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKLAKWLMEPFFEELIVGC 293 Query: 1083 FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1262 FVR+GIG YRLC VKNVDA TDP K Y E + T KYLN WG+E++AARWQM Sbjct: 294 FVRVGIGRSKSGPIYRLCWVKNVDA--TDPDKTYKLENKTTHKYLNVVWGNETSAARWQM 351 Query: 1263 IRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1442 +SD P E EY E+ER G+M ++ EK +++ N++VYSAETVKQMLQEK Sbjct: 352 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNSFVYSAETVKQMLQEK 411 Query: 1443 KMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALML 1622 K AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL L Sbjct: 412 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA-SRNKKGVDKKALKL 470 Query: 1623 AEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANEA 1790 AEMN+KNRAENF+ ASE K A+LKAGEAGYDPFSRRWTRS NYY K NEA Sbjct: 471 AEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYYNGKNKGKDGEENEA 530 Query: 1791 VPEAEKQPDEAK----VEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1958 A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL LS Sbjct: 531 AVAAAVETNGADAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSLSLTA 590 Query: 1959 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+ Sbjct: 591 LQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 643 >ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa] gi|550327599|gb|EEE97240.2| plus-3 domain-containing family protein [Populus trichocarpa] Length = 664 Score = 441 bits (1135), Expect = e-121 Identities = 277/673 (41%), Positives = 364/673 (54%), Gaps = 54/673 (8%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNS--KTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEM 434 MADLENLLLE AGR+ G NS +R+R+ S S+ GSDS DD Sbjct: 1 MADLENLLLEAAGRT-GKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRK 59 Query: 435 PNLKHSKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 590 P+ S++PLKKR ET Sbjct: 60 PS--GSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQ 117 Query: 591 --------EREMLLAERAEKRDSKQL---IKSAAERHPPSDSKKSXXXXXXXXXYREMRS 737 +RE++LA+RA+K+ K L I+S + P+ S+K R +RS Sbjct: 118 KLAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSS---RGVRS 174 Query: 738 SVRGADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXX 911 S R AD+ A+ AL EL AK+ K QD ++ R+ D + + Sbjct: 175 SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARL 234 Query: 912 XXXHEGSPRGNKRGKXXXXXXXSGAAS--------------YADICKITIKRSKLAKWFM 1049 S G++ G + Y DI +ITI+R+KLAKWFM Sbjct: 235 SSSSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFM 294 Query: 1050 EPFFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFW 1229 EP+FE +I GCFVR+GIG YRLC V+NVDA+ +P K Y E ++T+KYLN W Sbjct: 295 EPWFEELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAA--EPDKPYKLENKSTYKYLNVTW 352 Query: 1230 GDESNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYS 1409 G +S+AARWQM VSDSAP E EY E ER GG++ ++ EK + + N +VYS Sbjct: 353 GADSSAARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYS 412 Query: 1410 AETVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQ 1589 A TVKQMLQEKK AS RP N+AAEK++LR+EL A+S D+ E ERI ++ ELE S Q Sbjct: 413 AATVKQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEA-SRQ 471 Query: 1590 SKNKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASK 1769 +K K+ KAL LAEMNRKNR ENFR ASE K N LKAGEAGYDPFSRRWTRS NYY S Sbjct: 472 AKVKDAKALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSN 531 Query: 1770 VSNANEAVPEAEKQPD-----------------EAKVEETEKDMKVAVEEGKLINTEAPP 1898 + ++AV + + + E+ V T + A + GKL++T AP Sbjct: 532 PAGGDDAVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPV 591 Query: 1899 CIGSKVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLT 2078 G++ + +HNFEL++S L ++ G QGA A FMAR+Q++EA G + NDG+RH+LT Sbjct: 592 DQGTESNTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALT 651 Query: 2079 LTVDDYKRRRGLM 2117 LTV DYKRRRGL+ Sbjct: 652 LTVGDYKRRRGLL 664 >ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1 [Cicer arietinum] gi|502142571|ref|XP_004505023.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2 [Cicer arietinum] Length = 658 Score = 441 bits (1135), Expect = e-121 Identities = 282/667 (42%), Positives = 368/667 (55%), Gaps = 48/667 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNS-KTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMP 437 MADLENLLLE AGR+ G +S +RR S S+ GSDS DDSD + P Sbjct: 1 MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRD----DDSDDELNYP 56 Query: 438 NLKHS--KMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXXXX 563 + K S ++PLKKR + Sbjct: 57 SRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDR 116 Query: 564 XXXXXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSV 743 +REM+L++RA K+D K L+ A + + + R MR+S Sbjct: 117 RKLSEMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPPLSSSR-MRASA 175 Query: 744 RGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXX 920 R AD+ K AL EL AK+ K QD +++RR + AS++S P Sbjct: 176 RSADRSAKNVALNELRAKRLKQQDPEARRRLRE-ASRNSGPRRFSPPKRKSFTSANLSSS 234 Query: 921 HEGSPRGNKRGKXXXXXXXSGAA--------------SYADICKITIKRSKLAKWFMEPF 1058 G A S+ DI +ITI+RSKLAKWFMEPF Sbjct: 235 SHSDSDSRSHSDDEGSTGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPF 294 Query: 1059 FESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDE 1238 FE +I GCFVR+GIG YRLC VKNVD+S DP ++Y E R T KYLN WG+E Sbjct: 295 FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDSS--DPDRQYKLENRTTHKYLNVVWGNE 352 Query: 1239 SNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAET 1418 S+AARWQM VSDS P E E+ +E+ER GG+M +V EK +++I +VYSA+T Sbjct: 353 SSAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADT 412 Query: 1419 VKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKN 1598 VKQMLQEKK +S RP N+AAEK++LR+E+ A+S D+ E ERI+ +++ELE S +K Sbjct: 413 VKQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRVQELEA-SRHAKV 471 Query: 1599 KNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY------ 1760 K+ KAL LAEMNRKNR ENF+ ASE + N LKAGEAGYDPFSRRWTRS NYY Sbjct: 472 KDAKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTRSRNYYVAKPGE 531 Query: 1761 --ASKVSNANEAVPEAEKQ------PDEAKVEETEKDMKVAVEEGKLINTEAPPCIGSKV 1916 A++ + N V +A E+ V T ++ A + GKL++T AP G++ Sbjct: 532 KAAARKNTTNVLVADAGSNITGVPVTAESGVVATAAALEAAADAGKLVDTSAPVDQGTES 591 Query: 1917 HALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDY 2096 + LHNFEL +S LL++YGGAQGA A FMAR+Q++EA G + NDG+RH LTL+V DY Sbjct: 592 NFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRVSENDGRRHVLTLSVGDY 651 Query: 2097 KRRRGLM 2117 KRRRGL+ Sbjct: 652 KRRRGLL 658 >ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine max] Length = 656 Score = 441 bits (1134), Expect = e-121 Identities = 279/667 (41%), Positives = 364/667 (54%), Gaps = 48/667 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ + ++ + +RR + S+ GSDS D D DDE+ Sbjct: 1 MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSR------DDDSDDELNY 54 Query: 441 LKH----SKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------ 590 S++PLKKR + + Sbjct: 55 ASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDDR 114 Query: 591 ---------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSV 743 +REM+L++RA K+D K L+ A + + R MR+S Sbjct: 115 RKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR-MRASA 173 Query: 744 RGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXX 920 R AD+ K AL EL AK+ K QD ++ RR + AS+++ P Sbjct: 174 RSADRSAKNDALNELRAKRLKQQDPEAHRRLRE-ASRNAGPRHFSPPKRKTFTSTSLSSS 232 Query: 921 HEGSPRGNKRGKXXXXXXXSGAA--------------SYADICKITIKRSKLAKWFMEPF 1058 G A S+ DI +ITI+RSKLAKWFMEPF Sbjct: 233 SHSESESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPF 292 Query: 1059 FESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDE 1238 FE +I GCFVR+GIG YRLC VKNVDAS +P ++Y E + T+KYLN WG+E Sbjct: 293 FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGNE 350 Query: 1239 SNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAET 1418 S+AARWQM VSDSAP E E+ +E++ GG+M +V EK +++ +VYSA T Sbjct: 351 SSAARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAAT 410 Query: 1419 VKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKN 1598 VKQMLQEKK AS RP N+AAEK++LR+EL A+S D+ E ERI+ +L+ELE S Q+K Sbjct: 411 VKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEA-SRQAKQ 469 Query: 1599 KNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASK--- 1769 K+ KAL LAEMNRKNR ENF+ ASE K N LKAGEAGYDPFSRRWTRS NYYA+K Sbjct: 470 KDAKALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGE 529 Query: 1770 -------VSNANEAVPEAEKQ----PDEAKVEETEKDMKVAVEEGKLINTEAPPCIGSKV 1916 + N N A + EA + T ++ A GKL++T AP G++ Sbjct: 530 KAAAGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTES 589 Query: 1917 HALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDY 2096 + LHNFEL +S LL +YGGA GA A FMAR+Q++E+ G + NDG+RH+LTLTV DY Sbjct: 590 NMLHNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSDY 649 Query: 2097 KRRRGLM 2117 KRRRGL+ Sbjct: 650 KRRRGLL 656 >ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1 [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X2 [Glycine max] Length = 656 Score = 440 bits (1132), Expect = e-120 Identities = 282/666 (42%), Positives = 365/666 (54%), Gaps = 47/666 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ + ++ + + +RR + S+ GSDS D D DDE+ Sbjct: 1 MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSR------DEDSDDELNY 54 Query: 441 LKH----SKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------ 590 S++PLKKR + + Sbjct: 55 ASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDDR 114 Query: 591 ---------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSV 743 +REM+L++RA K+D K L+ A + R MR+S Sbjct: 115 RKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR-MRASA 173 Query: 744 RGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXX 920 R AD+ K AL EL AK+ K QD ++ RR + + S Sbjct: 174 RSADRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSS 233 Query: 921 H-----------EGSPR--GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFF 1061 H EGS G S S+ D+ +ITI+RSKLAKWFMEPFF Sbjct: 234 HSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFF 293 Query: 1062 ESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDES 1241 E +I GCFVR+GIG YRLC VKNVDAS +P ++Y E + T+KYLN WG+ES Sbjct: 294 EELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGNES 351 Query: 1242 NAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETV 1421 +AARWQM VSDSAP E E+ +E++R GG+M +V EK +++ +VYSA TV Sbjct: 352 SAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATV 411 Query: 1422 KQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNK 1601 KQMLQEKK AS RP N+AAEK++LR+EL A+S D+ E ERI+ +L ELE S Q+K K Sbjct: 412 KQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEA-SRQAKQK 470 Query: 1602 NEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKV--- 1772 + KAL LAEMNRKNR ENF+ ASE K N LKAGEAGYDPFSRRWTRS NYYA+K Sbjct: 471 DAKALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEK 530 Query: 1773 -----SNANEAVPEAEKQ------PDEAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVH 1919 ++ N V A EA + T ++ A GKL++T AP G++ + Sbjct: 531 AAAGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESN 590 Query: 1920 ALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYK 2099 LHNFEL +S LL ++GGAQGA A FMAR+Q++EA G + NDG+RH+LTLTV DYK Sbjct: 591 MLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYK 650 Query: 2100 RRRGLM 2117 RRRGL+ Sbjct: 651 RRRGLL 656 >gb|ESW31293.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris] Length = 654 Score = 440 bits (1131), Expect = e-120 Identities = 280/665 (42%), Positives = 367/665 (55%), Gaps = 46/665 (6%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ + ++ + +RR + S+ GSDS D D DDE+ Sbjct: 1 MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSR------DDDSDDELNY 54 Query: 441 LKH----SKMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF------ 590 S++PLKKR + Sbjct: 55 ASRKPSGSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDD 114 Query: 591 ----------EREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSS 740 +REM+L++RA K+D K L+ A + R MR+S Sbjct: 115 RRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPPMSSSR-MRAS 173 Query: 741 VRGADKG-KARALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXX 917 R AD+ K AL EL AK+ K QD ++ R+ + AS+++ P Sbjct: 174 ARSADRSAKNDALNELRAKRLKQQDPEAHRKLRE-ASRNAGPRHFSPPKRKPFTSTSLSS 232 Query: 918 XH------------EGSPRGNKRGKXXXXXXXSGAA--SYADICKITIKRSKLAKWFMEP 1055 EGS G +G+ S+ DI +ITI+RSKLAKWFMEP Sbjct: 233 SSHSESESRSHSDDEGSTGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEP 292 Query: 1056 FFESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGD 1235 FFE +I GCFVR+GIG YRLC VKNVDAS +P ++Y E + T+KYLN WG+ Sbjct: 293 FFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDAS--EPDRQYKLENKTTYKYLNVVWGN 350 Query: 1236 ESNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAE 1415 ES+AARWQM VSDSAP E E+ +E++R GG+M +V EK +++ +VYSA Sbjct: 351 ESSAARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAA 410 Query: 1416 TVKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSK 1595 TVKQMLQEKK AS RP N+AAEK++LR+EL A+S D+ E +RI+ +L+ELE S +K Sbjct: 411 TVKQMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEA-SRHAK 469 Query: 1596 NKNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY-ASKV 1772 K+ KAL LAEMNRKNR ENF+ ASE K N LKAGEAGYDPFSRRWTRS NYY K Sbjct: 470 QKDAKALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGEKA 529 Query: 1773 SNANEAVPEAEKQPD----------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHA 1922 + N +V P EA + T ++ A + GKL++T AP G++ + Sbjct: 530 AAGNNSVNGIVAGPGTNSTGAPVTAEAGLVATAAALEAAADAGKLVDTSAPVDQGTESNM 589 Query: 1923 LHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKR 2102 LHNFEL +S LL +YGGAQGA A FMAR+Q++E+ G + NDG+RHSLTL+V DYKR Sbjct: 590 LHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLSVSDYKR 649 Query: 2103 RRGLM 2117 RRGL+ Sbjct: 650 RRGLL 654 >ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella] gi|482569554|gb|EOA33742.1| hypothetical protein CARUB_v10019938mg [Capsella rubella] Length = 644 Score = 439 bits (1128), Expect = e-120 Identities = 280/653 (42%), Positives = 353/653 (54%), Gaps = 34/653 (5%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 M DLENLLLE AGR+ + + RR S S+ SDS DDSD D + Sbjct: 1 MGDLENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSR-----DDSDDDRGFAS 55 Query: 441 LKHS--KMPLKKRFET--------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 572 K S ++PLKKR E Sbjct: 56 RKPSGSQVPLKKRLEAEREDRAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKL 115 Query: 573 XXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGA 752 F+REM+LAERA+K+ K + + + S R +RSS R A Sbjct: 116 AGMTEFQREMILAERADKKGDKNFTEKLRSKRENEKTPVSKKETQPLPASRGVRSSARSA 175 Query: 753 DKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXX 911 D+ A+ AL EL AK+ K QD + R+ D + S+D S Sbjct: 176 DRAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGSGSRDFSSLKRKPLASSNLSNSSQ 235 Query: 912 XXXHEGSP---RGNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPFFESIIEGC 1082 S G+ G S ++ DI +ITI+RSKLAKW MEPFFE +I GC Sbjct: 236 SDSDSRSQSDDEGSNAG-LDSDDDRSDMPTFEDIKEITIRRSKLAKWLMEPFFEELIVGC 294 Query: 1083 FVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQM 1262 FVR+GIG YRLC V+NVDA TDP K Y E + T KYLN WG+E++AARWQM Sbjct: 295 FVRVGIGRSKSGPIYRLCMVRNVDA--TDPDKTYKLENKTTHKYLNVIWGNETSAARWQM 352 Query: 1263 IRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQEK 1442 +SD P E EY E+ER G+M ++ EK +++IN+++YSAETVKQMLQEK Sbjct: 353 AMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVKQMLQEK 412 Query: 1443 KMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALML 1622 K AS RP N+AAEK++LRKEL A+S D+ ERI+ K+++L+ S K ++KAL L Sbjct: 413 KSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDA-SRNKKGVDKKALKL 471 Query: 1623 AEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYY----ASKVSNANEA 1790 AEMN+KNRAENF+ ASE K A+LK GEAGYDPFSRRWTRS NYY K NEA Sbjct: 472 AEMNKKNRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKGKEGAENEA 531 Query: 1791 VPEAEKQPD----EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVHALHNFELDLSPDL 1958 A + + A VE TE ++ A E GKLI+T AP G++ + LHNFEL +S Sbjct: 532 AVAAAVETNGVDAGAGVEATEAALEAAAEAGKLIDTRAPIGQGAEHNQLHNFELSVSLAA 591 Query: 1959 LNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRRGLM 2117 L +YGG QG AFMAR+Q EA G + NDGKRH LTLTV DYKRRRGL+ Sbjct: 592 LQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRRRGLL 644 >ref|XP_004302289.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria vesca subsp. vesca] Length = 679 Score = 434 bits (1115), Expect = e-118 Identities = 278/663 (41%), Positives = 362/663 (54%), Gaps = 39/663 (5%) Frame = +3 Query: 246 KEARAMADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQD 425 KE MADLENLLLE AGR+ + ++ T ++R S S++ SDS +DSD Sbjct: 26 KETATMADLENLLLEAAGRTGAAVKNRQQLPTSRKRHGGSFSDDESDSGD----EDSDGG 81 Query: 426 DEMPNLKHSKMPLKKRF---------ETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 578 + K S++PLKKRF E Sbjct: 82 RNHASRKPSQVPLKKRFDPAERGSDEEHDDASDHESENSDESDLGTDLYKDDADRRRLSE 141 Query: 579 XXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGADK 758 EREM+L RAEK+D K+ ++ + S +S R +RSS R A+K Sbjct: 142 MTELEREMILTNRAEKKDGKKFMEKLRSKRDKERSIQSKKESSSVPFSRGVRSSARTAEK 201 Query: 759 GKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXXXXXX 917 A AL++L K+ K QD+ ++ D + S+D SP Sbjct: 202 SAALGDALSQLREKRLKQQDSKARSSLRDSSKENVGSQDFSPIKRKSLVAESLIDSDQNE 261 Query: 918 XHEGSPRGNKRGKXXXXXXXSG------AASYADICKITIKRSKLAKWFMEPFFESIIEG 1079 +EG + G +Y DI ITI RSKLAKW MEPFFE +I G Sbjct: 262 -NEGGLQTEDVGSASDNEFSDSDEEKVEPPTYQDIKDITIPRSKLAKWCMEPFFEELIVG 320 Query: 1080 CFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNAARWQ 1259 CFVRLG G+ Y+LC V+NVDA TD ++Y E + T KYLNC WG ES+A++WQ Sbjct: 321 CFVRLGFGKSSSGPIYKLCMVQNVDA--TDLNRQYQLEGKMTHKYLNCVWGSESSASKWQ 378 Query: 1260 MIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQMLQE 1439 M VS+SAP+E EY D E++R G M +V EK L++ N +VYSA TVKQMLQE Sbjct: 379 MAMVSNSAPEEEEYNDWIREVKRSAGYMPSKHDVLEKRETLQKSNTFVYSATTVKQMLQE 438 Query: 1440 KKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNEKALM 1619 K+ AS RP NIA EK++LR++L AES D EE RI+ +L+ELE S QS+ K+ KA+ Sbjct: 439 KR-ASARPVNIAVEKDRLRRQLEVAESKHDMEEVGRIKTRLQELEA-SRQSQEKDSKAIR 496 Query: 1620 LAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANEAVPE 1799 LAEMNRKNR ENF+ AS K N NLKAGEAGYDPFSRRWTRS NYY K +EA + Sbjct: 497 LAEMNRKNRFENFKNASGLKPINTNLKAGEAGYDPFSRRWTRSRNYYVGKPGGGDEAAED 556 Query: 1800 -----------AEKQPDEAKV------EETEKDMKVAVEEGKLINTEAPPCIGSKVHALH 1928 A EAKV + T ++ A GKL++T AP ++ + LH Sbjct: 557 ETAEAANGFLGASNDKAEAKVMGEFGVKATAAALEAAAGAGKLVDTRAPVDQATEAYTLH 616 Query: 1929 NFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYKRRR 2108 NFEL +S L ++GG GAPAA+ AR+Q++EA G +P +DGKRH+LTL+V DYKRRR Sbjct: 617 NFELPISLAGLQKFGGPHGAPAAYSARKQKIEATLGYKVPEDDGKRHALTLSVSDYKRRR 676 Query: 2109 GLM 2117 GL+ Sbjct: 677 GLL 679 >gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis] Length = 658 Score = 433 bits (1113), Expect = e-118 Identities = 268/666 (40%), Positives = 358/666 (53%), Gaps = 47/666 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MA+LENLLLE AGR+ S ++ + +RR S S+ GSDS DDSD D N Sbjct: 1 MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRD----DDSDDDRGYAN 56 Query: 441 LKHS--KMPLKKRF-------------ETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 575 K S ++PLKKR E Sbjct: 57 RKPSGSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSDLYKDDDDRRKLA 116 Query: 576 XXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVRGAD 755 +REM+L +RA K++ K L K + K + +RSS R AD Sbjct: 117 EMTELQREMILLDRASKKEDKNL-KEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSAD 175 Query: 756 KGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXXXHEG 929 + A+ AL EL AK+ K QD ++ + D + S + Sbjct: 176 RAAAKDDALNELRAKRLKQQDPEAHGKLRDASRGGSGSRNLLHNKRKSYTATSLSSSSQS 235 Query: 930 SPRGNKRGKXXXXXXXSG--------------AASYADICKITIKRSKLAKWFMEPFFES 1067 + + G ++ DI ++T++RSKLAKW MEPFFE Sbjct: 236 DSESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPFFEE 295 Query: 1068 IIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESNA 1247 +I GCFVR+GIG YRLC V+NVDAS +P ++Y + + T KYLN WG+E++A Sbjct: 296 LIVGCFVRVGIGRSKSGPIYRLCMVRNVDAS--EPDRQYKLDNKITHKYLNVVWGNENSA 353 Query: 1248 ARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVKQ 1427 ARWQM VSDS P+E E+ E+ER GG+M ++ +K +++IN +VYSA TVKQ Sbjct: 354 ARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATVKQ 413 Query: 1428 MLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKNE 1607 MLQEKK AS RP NIA EK++LR+EL A+S D+ E +RI+ +L+ELE S ++K + Sbjct: 414 MLQEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEA-SRKAKQTDA 472 Query: 1608 KALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSNANE 1787 KA+ LAEMNRKNR ENF+ ASE K N LKAGEAGYDPFSRRWTRS NYY K E Sbjct: 473 KAIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVKE 532 Query: 1788 ----------AVPEAEKQ------PDEAKVEETEKDMKVAVEEGKLINTEAPPCIGSKVH 1919 A +AE EA + TE ++ A + GKL++T AP G+ + Sbjct: 533 DSGANAGNNGASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAPVDQGTVSN 592 Query: 1920 ALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDYK 2099 LHNFEL +S +L ++GG QGA A FMAR+Q++EA G +P NDG+RH+LTL+V DYK Sbjct: 593 MLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLSVGDYK 652 Query: 2100 RRRGLM 2117 RRRGL+ Sbjct: 653 RRRGLL 658 >ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis sativus] Length = 660 Score = 430 bits (1106), Expect = e-117 Identities = 275/669 (41%), Positives = 369/669 (55%), Gaps = 50/669 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ + ++ + +R+ S S+ GSDS DDSD D + Sbjct: 1 MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRD----DDSDDDRGYAS 56 Query: 441 LKHS--KMPLKKRFET----------------GXXXXXXXXXXXXXXXXXXXXXXXXXXX 566 K S ++PLKKR + Sbjct: 57 RKPSGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRR 116 Query: 567 XXXXXXXFEREMLLAERAEKRDSKQLIKSAAERHPPSDSKKSXXXXXXXXXYREMRSSVR 746 +REM+L++RA K++ K L +S + S S R +RSS R Sbjct: 117 KLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSR-IRSSAR 175 Query: 747 GADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKA-----SKDSSPXXXXXXXXXXXXXX 905 AD+ A+ AL EL AK+ K QD ++ R+ D + S+ SP Sbjct: 176 SADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLSSS 235 Query: 906 XXXXXH-------EGSPR--GNKRGKXXXXXXXSGAASYADICKITIKRSKLAKWFMEPF 1058 EGS G S ++ DI ++TI+RSKLAKW MEPF Sbjct: 236 SQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPF 295 Query: 1059 FESIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDE 1238 FE +I GCFVR+GIG YRLC V+NVDA T+P ++Y E + T KYLN WG+E Sbjct: 296 FEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDA--TEPDRQYKLENKITHKYLNVIWGNE 353 Query: 1239 SNAARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAET 1418 ++AARWQM VSDSAP E EY +E+ER GG+M+ ++ EK ++++NN+VYSA T Sbjct: 354 ASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAAT 413 Query: 1419 VKQMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKN 1598 VKQMLQ+KK AS RP NIAAEK++LR+E+ A S D+ E ERI+ +L++LE S + + Sbjct: 414 VKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEA-SRRLQM 472 Query: 1599 KNEKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASKVSN 1778 K+ KA+ LAEMNRKNR ENF+ ASE R +LKAGEAGYDPFSRRWTRS NYY S Sbjct: 473 KDAKAIRLAEMNRKNRVENFKNASE-LRPLKDLKAGEAGYDPFSRRWTRSRNYYVSNAGE 531 Query: 1779 ANEAVPEAEKQPD----------------EAKVEETEKDMKVAVEEGKLINTEAPPCIGS 1910 AN A A + +A + T ++ A GKL++T AP G+ Sbjct: 532 ANGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGT 591 Query: 1911 KVHALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVD 2090 + ++LHNFEL +S +L ++GGA GA A F+AR+Q++EA G +P NDG+RH+LTLTV Sbjct: 592 ESNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVS 651 Query: 2091 DYKRRRGLM 2117 DYKRRRGL+ Sbjct: 652 DYKRRRGLL 660 >gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica] Length = 646 Score = 427 bits (1099), Expect = e-117 Identities = 272/667 (40%), Positives = 363/667 (54%), Gaps = 48/667 (7%) Frame = +3 Query: 261 MADLENLLLECAGRSMSLDGHQDNSKTRKRRPSFSDSENGSDSNKYSEPDDSDQDDEMPN 440 MADLENLLLE AGR+ S + + + +RR S S+ GSDS DDSD + Sbjct: 1 MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRG----DDSDDGRGYAS 56 Query: 441 LKHS--KMPLKKRFETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXF-------- 590 K S ++PLKKR + + Sbjct: 57 RKPSGTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSDLYKDEDDRRK 116 Query: 591 -------EREMLLAERAEKRDSKQLIKSAAERH--PPSDSKKSXXXXXXXXXYREMRSSV 743 +RE++L++RA+K+D K L + + PP S + +RSS Sbjct: 117 LAEMSELQRELILSDRAQKKDDKSLKEKFRPKKETPPLPSSR-------------VRSSA 163 Query: 744 RGADKGKAR--ALTELIAKKRKAQDTDSQRRRNDKASKDSSPXXXXXXXXXXXXXXXXXX 917 R AD+ A+ AL EL AK+ K QD ++ R+ D AS+ SS Sbjct: 164 RSADRAAAKDDALNELRAKRLKQQDPEAHRKLRD-ASRGSSGSRSFSHMTRKSFTAVGRS 222 Query: 918 XHEGSPRGNKRGKXXXXXXX-----------SGAASYADICKITIKRSKLAKWFMEPFFE 1064 S ++ S ++ DI +ITI+RSKLAKW MEPFFE Sbjct: 223 SSSQSDSDSRSHSEDDGSTGEDPMMDSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFFE 282 Query: 1065 SIIEGCFVRLGIGEKHGRRYYRLCRVKNVDASSTDPKKKYTFEKRATFKYLNCFWGDESN 1244 +I GCFVR+GIG YRLC V+NVDAS DP +KY E + T KYLN WG+E++ Sbjct: 283 ELIVGCFVRVGIGRSKSGPIYRLCMVRNVDAS--DPDRKYKLENKTTHKYLNVVWGNENS 340 Query: 1245 AARWQMIRVSDSAPDELEYIDLREEMERKGGKMIRTDEVEEKLTQLEQINNYVYSAETVK 1424 AARWQM +SDSAP E E+ E+ER GG++ +V EK +++IN +VYSA TVK Sbjct: 341 AARWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVK 400 Query: 1425 QMLQEKKMASQRPSNIAAEKEKLRKELMHAESMEDQEEAERIRMKLRELEVISNQSKNKN 1604 QM++EKK AS RP NIA EK++LR+EL A+S D E ERI+ +L++LE QS+ K+ Sbjct: 401 QMIEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEA-RRQSQGKD 459 Query: 1605 EKALMLAEMNRKNRAENFRVASESKRANANLKAGEAGYDPFSRRWTRSHNYYASK----- 1769 KA+ LAEMNRKNR ENF+ ASE K LKAGEAGYDPFSRRWTRS NYY SK Sbjct: 460 SKAVRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQK 519 Query: 1770 -----VSNANEAVPEAEKQPD------EAKVEETEKDMKVAVEEGKLINTEAPPCIGSKV 1916 + +A+ A+ + E A + T ++ A GKLI+T AP G++ Sbjct: 520 GEAEAIVDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDFGTES 579 Query: 1917 HALHNFELDLSPDLLNRYGGAQGAPAAFMARRQQLEARYGIPIPSNDGKRHSLTLTVDDY 2096 + +HNFEL +S L ++GG QGA F+AR+Q++EA G +P NDG+RH+LTLTV DY Sbjct: 580 NLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLTVSDY 639 Query: 2097 KRRRGLM 2117 KRR GL+ Sbjct: 640 KRRMGLL 646