BLASTX nr result
ID: Ephedra27_contig00007980
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00007980
(1503 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Sela... 379 e-124
ref|XP_006856708.1| hypothetical protein AMTR_s00054p00174840 [A... 366 e-124
ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V... 374 e-123
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li... 369 e-123
ref|XP_003602039.1| Replication factor C subunit [Medicago trunc... 373 e-123
ref|XP_003526636.1| PREDICTED: replication factor C subunit 3-li... 372 e-123
ref|XP_001771105.1| predicted protein [Physcomitrella patens] gi... 376 e-123
ref|XP_006472809.1| PREDICTED: replication factor C subunit 3-li... 371 e-122
ref|XP_006434237.1| hypothetical protein CICLE_v10001597mg [Citr... 370 e-122
ref|XP_003523440.1| PREDICTED: replication factor C subunit 3-li... 371 e-122
ref|NP_001136580.1| replication factor C subunit 3 [Zea mays] gi... 365 e-122
gb|ACG35868.1| replication factor C subunit 3 [Zea mays] 365 e-121
ref|XP_004502480.1| PREDICTED: replication factor C subunit 5-li... 366 e-121
dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa... 368 e-121
ref|XP_002302226.1| replication factor C 36 kDA family protein [... 367 e-121
ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [S... 363 e-121
ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group] g... 368 e-121
ref|XP_006390087.1| hypothetical protein EUTSA_v10018756mg [Eutr... 357 e-120
ref|XP_002520343.1| replication factor C / DNA polymerase III ga... 362 e-120
ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-li... 361 e-120
>ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein
SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein
SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein
SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 379 bits (973), Expect(2) = e-124
Identities = 186/227 (81%), Positives = 204/227 (89%)
Frame = +1
Query: 223 RRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKL 402
R GPWVEKYRP SL DVAAH+DIIDTIDRLT ENKLPHLLLYGPPGTGKTST+LAVARKL
Sbjct: 7 RSGPWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKL 66
Query: 403 YGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQ 582
YG Q+QNM+LELNASDDRGIDVVRQQIQDFAS+QS+SFG K NVKL++LDEADAMTKDAQ
Sbjct: 67 YGPQFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKANVKLIILDEADAMTKDAQ 126
Query: 583 FSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERL 762
FSLRR+IEKYTK TRFCL+CNYV+KIIPALQSRCTRFRF PL A HV++RL FVI +ERL
Sbjct: 127 FSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQERL 186
Query: 763 NVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
+VT+DG+SAI RL GDMRKALNILQSTQM+ P V E VY TGNP
Sbjct: 187 DVTEDGLSAIVRLSNGDMRKALNILQSTQMAEPHVTEAAVYSCTGNP 233
Score = 95.9 bits (237), Expect(2) = e-124
Identities = 44/71 (61%), Positives = 57/71 (80%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
Y I ++KT KG+AL+D++R++ FIF I+MP +R+ LIN LADIEYRL G NEKLQL
Sbjct: 254 YSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIEYRLASGPNEKLQL 313
Query: 1122 GSLISAFTHTR 1154
G+L+SAFTHTR
Sbjct: 314 GALVSAFTHTR 324
>ref|XP_006856708.1| hypothetical protein AMTR_s00054p00174840 [Amborella trichopoda]
gi|548860608|gb|ERN18175.1| hypothetical protein
AMTR_s00054p00174840 [Amborella trichopoda]
Length = 359
Score = 366 bits (940), Expect(2) = e-124
Identities = 183/240 (76%), Positives = 210/240 (87%), Gaps = 1/240 (0%)
Frame = +1
Query: 187 GKAKLIAEDPSLRRG-PWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
GK K++ + L + PWVEKYRPQSL DVAAH+DIIDT+DRLTNEN+LPHLLLYGPPGT
Sbjct: 21 GKGKVVEREQLLPKATPWVEKYRPQSLADVAAHKDIIDTVDRLTNENRLPHLLLYGPPGT 80
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTSTVLAVARKLYG +NM+LELNASDDRGIDVVRQQIQDFAS+QS SFG K +VKLV
Sbjct: 81 GKTSTVLAVARKLYGGNLRNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLV 140
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEKYTK+TRF L+CN+VNKIIPALQSRCTRFRFAPL+A HV
Sbjct: 141 LLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAAHV 200
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
++RL++VI+ E L+V + G+SA+ RL GDMRKALNILQST M+S V E+ VYL TGNP
Sbjct: 201 RERLQYVIKAEGLDVDESGLSAVVRLSNGDMRKALNILQSTHMASQHVSEKAVYLCTGNP 260
Score = 106 bits (265), Expect(2) = e-124
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
Y+YIS+MKT KG+AL+DI+R++ +FIF I MP+ VR+QLIN LADIEYRL+FG N+KLQL
Sbjct: 281 YKYISDMKTTKGLALVDIVREVTMFIFMIKMPSTVRVQLINDLADIEYRLSFGCNDKLQL 340
Query: 1122 GSLISAFTHTR 1154
GSLI +FTH R
Sbjct: 341 GSLIGSFTHVR 351
>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product
[Vitis vinifera]
Length = 360
Score = 374 bits (961), Expect(2) = e-123
Identities = 187/263 (71%), Positives = 219/263 (83%)
Frame = +1
Query: 115 EETVAMETDEGYVDQQRINLENRKGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDII 294
E M+ DE + L+ KGK+ ++ P + PWVEKYRPQSL DVAAHRDI+
Sbjct: 3 EAVTVMDIDE----EDNHLLKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIV 58
Query: 295 DTIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVR 474
DTIDRLT+EN+LPHLLLYGPPGTGKTST+LAVARKLYG+Q+ NM+LELNASDDRGIDVVR
Sbjct: 59 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVR 118
Query: 475 QQIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVN 654
QQIQDFAS+QS SFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK TRF L+CN+VN
Sbjct: 119 QQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 178
Query: 655 KIIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNI 834
KIIPALQSRCTRFRFAPL+A HV +RL+ VI E+L+V++ G++A+ RL GDMRKALNI
Sbjct: 179 KIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNI 238
Query: 835 LQSTQMSSPRVDEETVYLATGNP 903
LQST M+S ++ EE VYL TGNP
Sbjct: 239 LQSTHMASQQITEEAVYLCTGNP 261
Score = 97.8 bits (242), Expect(2) = e-123
Identities = 43/68 (63%), Positives = 61/68 (89%)
Frame = +3
Query: 951 ISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQLGSL 1130
ISE+K +KG+AL+D++R++ +F+F+I MP++VR+QLIN LADIEYRL+FG N+KLQLGSL
Sbjct: 285 ISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSL 344
Query: 1131 ISAFTHTR 1154
I++FT R
Sbjct: 345 IASFTRAR 352
>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication
factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 369 bits (946), Expect(2) = e-123
Identities = 186/255 (72%), Positives = 213/255 (83%), Gaps = 4/255 (1%)
Frame = +1
Query: 151 VDQQRINLENRKG-KAKLIAEDPSLRRG---PWVEKYRPQSLQDVAAHRDIIDTIDRLTN 318
+D N E K K K +A + G PWVEK+RP+SL DVAAHRDI+DTID+LT+
Sbjct: 10 IDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTS 69
Query: 319 ENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFAS 498
EN+LPHLLLYGPPGTGKTST+LAVARKLYG Y NM+LELNASDDRGIDVVRQQIQDFAS
Sbjct: 70 ENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFAS 129
Query: 499 SQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQS 678
+QS SFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK TRF L+CN+VNKIIPALQS
Sbjct: 130 TQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQS 189
Query: 679 RCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSS 858
RCTRFRFAPL+ HV +RLR+VI+ ERL+VT+ G++A+ RLC GDMRKALNILQST M+S
Sbjct: 190 RCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTHMAS 249
Query: 859 PRVDEETVYLATGNP 903
+ EE VYL TGNP
Sbjct: 250 QHITEEAVYLCTGNP 264
Score = 102 bits (254), Expect(2) = e-123
Identities = 46/71 (64%), Positives = 63/71 (88%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ ISE+KT+KG+AL+DI+R++ LF+F+I MP+ +R+QLIN LADIEYR+TFG N+KLQL
Sbjct: 285 FKRISEIKTRKGLALVDIVREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQL 344
Query: 1122 GSLISAFTHTR 1154
GSLIS+FT R
Sbjct: 345 GSLISSFTGAR 355
>ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit
[Medicago truncatula]
Length = 355
Score = 373 bits (958), Expect(2) = e-123
Identities = 194/265 (73%), Positives = 217/265 (81%), Gaps = 2/265 (0%)
Frame = +1
Query: 115 EETVAMETDEGYVDQQRINLENRKGKAKLIAEDPSL--RRGPWVEKYRPQSLQDVAAHRD 288
EET AM+ D KGK + A +PS + WVEKYRPQSL DVAAHRD
Sbjct: 3 EETYAMDIDV-----------TDKGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRD 51
Query: 289 IIDTIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDV 468
I+DTIDRLT EN+LPHLLLYGPPGTGKTST+LAVARKLYG QY NM+LELNASDDRGIDV
Sbjct: 52 IVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 111
Query: 469 VRQQIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNY 648
VRQQIQDFAS+QSLSFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK+TRF L+CN+
Sbjct: 112 VRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNH 171
Query: 649 VNKIIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKAL 828
VNKIIPALQSRCTRFRFAPL+A HV +RL+ VI ERL+V D G+SA+ RL GDMRKAL
Sbjct: 172 VNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKAL 231
Query: 829 NILQSTQMSSPRVDEETVYLATGNP 903
NILQST M+S ++ EE VYL TGNP
Sbjct: 232 NILQSTHMASQQITEEAVYLCTGNP 256
Score = 97.4 bits (241), Expect(2) = e-123
Identities = 41/71 (57%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ I +MKT+KG+AL+DI+R++ +F+F+I MP+ VR+QL+N LADIEYRL+FG N+KLQL
Sbjct: 277 FKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQL 336
Query: 1122 GSLISAFTHTR 1154
GS++++FT R
Sbjct: 337 GSVVASFTRAR 347
>ref|XP_003526636.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
Length = 361
Score = 372 bits (954), Expect(2) = e-123
Identities = 190/262 (72%), Positives = 216/262 (82%), Gaps = 2/262 (0%)
Frame = +1
Query: 124 VAMETDEGYVDQQRINLENRKGKAKLIAEDPSL--RRGPWVEKYRPQSLQDVAAHRDIID 297
+A T +D KGK+ + A +P + PWVEKYRPQSL DVAAHRDI+D
Sbjct: 1 MAQTTHPMDIDDHTYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVD 60
Query: 298 TIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQ 477
TIDRLT EN+LPHLLLYGPPGTGKTST+LAVARKLYG QYQNM+LELNASDDRGIDVVRQ
Sbjct: 61 TIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQ 120
Query: 478 QIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNK 657
QIQDFAS+QSLSFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK+TRF L+CN+VNK
Sbjct: 121 QIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNK 180
Query: 658 IIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNIL 837
IIPALQSRCTRFRFAPL+A HV +RL+ VI+ E L+V D G++A RL GDMRKALNIL
Sbjct: 181 IIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNIL 240
Query: 838 QSTQMSSPRVDEETVYLATGNP 903
QST M+S ++ EE VYL TGNP
Sbjct: 241 QSTHMASQQITEEAVYLCTGNP 262
Score = 98.6 bits (244), Expect(2) = e-123
Identities = 43/71 (60%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ I EMKT+KG+AL+DI+R++ +F+F+I MP+ VR+QL+N LADIEYRL+FG N+KLQL
Sbjct: 283 FKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQL 342
Query: 1122 GSLISAFTHTR 1154
GS+I++FT R
Sbjct: 343 GSVIASFTRAR 353
>ref|XP_001771105.1| predicted protein [Physcomitrella patens]
gi|162677638|gb|EDQ64106.1| predicted protein
[Physcomitrella patens]
Length = 365
Score = 376 bits (966), Expect(2) = e-123
Identities = 185/243 (76%), Positives = 216/243 (88%), Gaps = 1/243 (0%)
Frame = +1
Query: 178 NRKGKAKL-IAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGP 354
++KGK K+ + ++ GPWVEKYRP SL DVAAH+DIIDTIDRLT EN+LPHLLLYGP
Sbjct: 13 SQKGKGKVDLNNGRQVKGGPWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYGP 72
Query: 355 PGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNV 534
PGTGKTST+LAVARKLYG QYQNM+LELNASDDRGI+VVRQQIQDFAS++S+SFG K+NV
Sbjct: 73 PGTGKTSTILAVARKLYGAQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFGPKVNV 132
Query: 535 KLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNA 714
KLV+LDEADAMTKDAQF+LRRVIEKYTK+TRFCL+CNY +KIIPALQSRCTRFRFAPL+
Sbjct: 133 KLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRFAPLDP 192
Query: 715 GHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLAT 894
+V +RLR+VIQ+E L+VTD G++AI RL GD+RKALNILQS QM+SP + EE VYL T
Sbjct: 193 ANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSAQMASPHLTEEAVYLCT 252
Query: 895 GNP 903
GNP
Sbjct: 253 GNP 255
Score = 93.6 bits (231), Expect(2) = e-123
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = +3
Query: 951 ISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQLGSL 1130
I++MKT KG+AL+D+ R++ F+F I MP VR+QLI+ALAD+EYRL FGTNEKLQLG+L
Sbjct: 290 ITKMKTSKGLALVDVARELQPFVFTINMPPTVRVQLIDALADVEYRLAFGTNEKLQLGAL 349
Query: 1131 ISAFTHTR 1154
+ AFT R
Sbjct: 350 LGAFTRAR 357
>ref|XP_006472809.1| PREDICTED: replication factor C subunit 3-like [Citrus sinensis]
Length = 364
Score = 371 bits (952), Expect(2) = e-122
Identities = 190/264 (71%), Positives = 219/264 (82%), Gaps = 2/264 (0%)
Frame = +1
Query: 118 ETVA-METDEGYVDQQRINLENRKGKAKLIA-EDPSLRRGPWVEKYRPQSLQDVAAHRDI 291
ETV+ M+ DE D+ + GK +++ P ++ PWVEKYRPQSL DVAAHRDI
Sbjct: 5 ETVSLMDIDE---DENKNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDI 61
Query: 292 IDTIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVV 471
+DTIDRLT+EN+LPHLLLYGPPGTGKTST+LAVARKLYG QY NM+LELNASDDRGIDVV
Sbjct: 62 VDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 121
Query: 472 RQQIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYV 651
RQQIQDFAS+QS SFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK TRF L+CN V
Sbjct: 122 RQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQV 181
Query: 652 NKIIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALN 831
NKIIPALQSRCTRFRFAPL HV +RL+ VI+ E L+VT+ G++A+ RLC GDMRKALN
Sbjct: 182 NKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALN 241
Query: 832 ILQSTQMSSPRVDEETVYLATGNP 903
ILQST M+S ++ EE VYL TGNP
Sbjct: 242 ILQSTHMASQQITEEAVYLCTGNP 265
Score = 98.2 bits (243), Expect(2) = e-122
Identities = 43/71 (60%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ ISEMK +KG+AL+DI+R++ +F+F+I MP++VR++L+N LADIEYRL+FG N+KLQL
Sbjct: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
Query: 1122 GSLISAFTHTR 1154
GS+IS FT R
Sbjct: 346 GSIISTFTQAR 356
>ref|XP_006434237.1| hypothetical protein CICLE_v10001597mg [Citrus clementina]
gi|557536359|gb|ESR47477.1| hypothetical protein
CICLE_v10001597mg [Citrus clementina]
Length = 364
Score = 370 bits (951), Expect(2) = e-122
Identities = 188/263 (71%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Frame = +1
Query: 118 ETVA-METDEGYVDQQRINLENRKGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDII 294
ETV+ M+ DE + Q + ++ + P ++ PWVEKYRPQSL DVAAHRDI+
Sbjct: 5 ETVSLMDFDED--ENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRDIV 62
Query: 295 DTIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVR 474
DTIDRLT+EN+LPHLLLYGPPGTGKTST+LAVARKLYG QY NM+LELNASDDRGIDVVR
Sbjct: 63 DTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 122
Query: 475 QQIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVN 654
QQIQDFAS+QS SFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK TRF L+CN VN
Sbjct: 123 QQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVN 182
Query: 655 KIIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNI 834
KIIPALQSRCTRFRFAPL HV +RL+ VI+ E L+VT+ G++A+ RLC GDMRKALNI
Sbjct: 183 KIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNI 242
Query: 835 LQSTQMSSPRVDEETVYLATGNP 903
LQST M+S ++ EE VYL TGNP
Sbjct: 243 LQSTHMASQQITEEAVYLCTGNP 265
Score = 98.2 bits (243), Expect(2) = e-122
Identities = 43/71 (60%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ ISEMK +KG+AL+DI+R++ +F+F+I MP++VR++L+N LADIEYRL+FG N+KLQL
Sbjct: 286 FKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 345
Query: 1122 GSLISAFTHTR 1154
GS+IS FT R
Sbjct: 346 GSIISTFTQAR 356
>ref|XP_003523440.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
Length = 363
Score = 371 bits (952), Expect(2) = e-122
Identities = 186/242 (76%), Positives = 213/242 (88%), Gaps = 2/242 (0%)
Frame = +1
Query: 184 KGKAKLIAEDPSL--RRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPP 357
K K+ ++A +P+ + PWVEKYRP SL DVAAHRDI+DTIDRLT EN+LPHLLLYGPP
Sbjct: 23 KAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPP 82
Query: 358 GTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVK 537
GTGKTST+LAVARKLYG QYQNM+LELNASDDRGIDVVRQQIQDFAS+QSLSFG K +VK
Sbjct: 83 GTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVK 142
Query: 538 LVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAG 717
LVLLDEADAMTKDAQF+LRRVIEKYTK+TRF L+CN+VNKIIPALQSRCTRFRFAPL+A
Sbjct: 143 LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAV 202
Query: 718 HVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATG 897
HV +RL+ VI+ E L+V D G++A+ RL GDMRKALNILQST M+S ++ EETVYL TG
Sbjct: 203 HVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEETVYLCTG 262
Query: 898 NP 903
NP
Sbjct: 263 NP 264
Score = 97.4 bits (241), Expect(2) = e-122
Identities = 43/71 (60%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ I EMKT+KG+AL+DI+R++ LF+F+I MP+ VR+QL+N LADIEYRL+FG N+KLQL
Sbjct: 285 FKRIDEMKTRKGLALVDIVREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQL 344
Query: 1122 GSLISAFTHTR 1154
GS+I++F+ R
Sbjct: 345 GSVIASFSRAR 355
>ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit
3 [Zea mays]
Length = 362
Score = 365 bits (937), Expect(2) = e-122
Identities = 182/240 (75%), Positives = 209/240 (87%)
Frame = +1
Query: 184 KGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
KGKA L A R PWVEKYRPQSL DVAAHRDI+DTIDRLTNEN+LPHLLLYGPPGT
Sbjct: 27 KGKAPLSAGG---RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGT 83
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTST+LAVARKLYG QY NM+LELNASD+RGIDVVRQQIQDFA ++SLSFG + +VKLV
Sbjct: 84 GKTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLV 143
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEKYT++TRF L+CN+VNKIIPALQSRCTRFRFAPL+ HV
Sbjct: 144 LLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHV 203
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
++RL+ +I+ E L+V D G++A+ RL GDMRKALNILQST M+S ++ EE VYL TGNP
Sbjct: 204 RERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 263
Score = 100 bits (250), Expect(2) = e-122
Identities = 45/71 (63%), Positives = 63/71 (88%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++YIS+MK +KG+AL+DIIR++ +F+F+I MP++VR++LIN LADIEYRL+F N+KLQL
Sbjct: 284 FKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFACNDKLQL 343
Query: 1122 GSLISAFTHTR 1154
G+LIS FT TR
Sbjct: 344 GALISTFTDTR 354
>gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 365 bits (936), Expect(2) = e-121
Identities = 182/240 (75%), Positives = 209/240 (87%)
Frame = +1
Query: 184 KGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
KGKA L A R PWVEKYRPQSL DVAAHRDI+DTIDRLTNEN+LPHLLLYGPPGT
Sbjct: 27 KGKALLSAGG---RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGT 83
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTST+LAVARKLYG QY NM+LELNASD+RGIDVVRQQIQDFA ++SLSFG + +VKLV
Sbjct: 84 GKTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLV 143
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEKYT++TRF L+CN+VNKIIPALQSRCTRFRFAPL+ HV
Sbjct: 144 LLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHV 203
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
++RL+ +I+ E L+V D G++A+ RL GDMRKALNILQST M+S ++ EE VYL TGNP
Sbjct: 204 RERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 263
Score = 100 bits (250), Expect(2) = e-121
Identities = 45/71 (63%), Positives = 63/71 (88%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++YIS+MK +KG+AL+DIIR++ +F+F+I MP++VR++LIN LADIEYRL+F N+KLQL
Sbjct: 284 FKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINNLADIEYRLSFACNDKLQL 343
Query: 1122 GSLISAFTHTR 1154
G+LIS FT TR
Sbjct: 344 GALISTFTDTR 354
>ref|XP_004502480.1| PREDICTED: replication factor C subunit 5-like isoform X1 [Cicer
arietinum]
Length = 363
Score = 366 bits (939), Expect(2) = e-121
Identities = 185/242 (76%), Positives = 210/242 (86%), Gaps = 2/242 (0%)
Frame = +1
Query: 184 KGKAKLIAEDPSL--RRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPP 357
KGK + A +PS+ + WVEKYRPQSL DVAAHRDI+DTIDRLT EN+LPHLLLYGPP
Sbjct: 23 KGKTVISAPNPSIGGKSTLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPP 82
Query: 358 GTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVK 537
GTGKTST+LAVARKLYG QY NM+LELNASDDRGIDVVRQQIQDFAS+QSLSFG K +VK
Sbjct: 83 GTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVK 142
Query: 538 LVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAG 717
L+LLDEADAMTKDAQF+LRRVIEKYTK+TRF L+CN+VNKII ALQSRCTRFRFAPL+A
Sbjct: 143 LILLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIQALQSRCTRFRFAPLDAV 202
Query: 718 HVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATG 897
HV +RL+ VI+ E L+V D G+SA+ RL GDMRKALNILQST M+S ++ EE VYL TG
Sbjct: 203 HVTERLKHVIKAEGLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTG 262
Query: 898 NP 903
NP
Sbjct: 263 NP 264
Score = 99.0 bits (245), Expect(2) = e-121
Identities = 43/71 (60%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
Y+ I ++KT+KG+AL+DI+R++ +F+F+I MPA VR+QL+N LADIEYRL+FG N+KLQL
Sbjct: 285 YKRIHDIKTRKGLALIDIVREVTMFVFKIKMPAAVRVQLVNDLADIEYRLSFGCNDKLQL 344
Query: 1122 GSLISAFTHTR 1154
GS+I++FT R
Sbjct: 345 GSVIASFTRAR 355
>dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 368 bits (944), Expect(2) = e-121
Identities = 183/240 (76%), Positives = 211/240 (87%)
Frame = +1
Query: 184 KGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
KGKA L + P R PWVEKYRPQSL DVAAHRDI+DTIDRLTNEN+LPHLLLYGPPGT
Sbjct: 24 KGKAPL-SSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGT 82
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTST+LAVARKLYG QY NM+LELNASD+RGIDVVRQQIQDFAS++SLSFG K +VK+V
Sbjct: 83 GKTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMV 142
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEK+T++TRF L+CN+VNKIIPALQSRCTRFRFAPL+ HV
Sbjct: 143 LLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHV 202
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
++RL+ +IQ E L+V D G++A+ RL GDMRKALNILQST M+S ++ EE VYL TGNP
Sbjct: 203 RERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNP 262
Score = 96.7 bits (239), Expect(2) = e-121
Identities = 45/71 (63%), Positives = 61/71 (85%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
Y+ IS+MK +KG+AL+DIIR++ +F+F+I MP++VRI+LIN LADIEYRL+F N+KLQL
Sbjct: 289 YQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQL 348
Query: 1122 GSLISAFTHTR 1154
G+LIS FT R
Sbjct: 349 GALISTFTGAR 359
>ref|XP_002302226.1| replication factor C 36 kDA family protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| replication factor C 36 kDA
family protein [Populus trichocarpa]
Length = 363
Score = 367 bits (941), Expect(2) = e-121
Identities = 186/264 (70%), Positives = 216/264 (81%)
Frame = +1
Query: 112 MEETVAMETDEGYVDQQRINLENRKGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDI 291
M E +A+ + +Q ++ N+ K + A P + PWVEKYRPQSL DVAAHRDI
Sbjct: 1 MAEAIALMDIDEEENQNHLSKPNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDI 60
Query: 292 IDTIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVV 471
IDTIDRLT+EN+LPHLLLYGPPGTGKTST+LAVARKLYG QY NM+LELNASDDRGIDVV
Sbjct: 61 IDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 120
Query: 472 RQQIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYV 651
R+QIQDFAS+QS SFG K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK TRF L+CN+V
Sbjct: 121 RKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 180
Query: 652 NKIIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALN 831
NKIIPALQSRCTRFRFAPL+ HV +RL+ VI+ E L+V + G+ A+ L GDMRKALN
Sbjct: 181 NKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALN 240
Query: 832 ILQSTQMSSPRVDEETVYLATGNP 903
ILQST M+S ++ EETVYL TGNP
Sbjct: 241 ILQSTHMASQQITEETVYLCTGNP 264
Score = 97.4 bits (241), Expect(2) = e-121
Identities = 43/71 (60%), Positives = 62/71 (87%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
Y+ ISE+KT+KG+AL+DI+R++ +F+F+I M +++R+ LIN LADIEYRL+FG N+KLQL
Sbjct: 285 YKRISEIKTRKGLALVDIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKLQL 344
Query: 1122 GSLISAFTHTR 1154
GSLI++FT R
Sbjct: 345 GSLIASFTRAR 355
>ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein
SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 363 bits (933), Expect(2) = e-121
Identities = 181/240 (75%), Positives = 209/240 (87%)
Frame = +1
Query: 184 KGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
KGKA L A R PWVEKYRPQSL DVAAHRDI+DTIDRLTNEN+LPHLLLYGPPGT
Sbjct: 27 KGKAPLSAGG---RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGT 83
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTST+LAVARKLYG QY NM+LELNASD+RGIDVVRQQIQDFA ++SLSFG + +VKLV
Sbjct: 84 GKTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLV 143
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEKYT++TRF L+CN+VNKIIPALQSRCTRFRFAPL+ HV
Sbjct: 144 LLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHV 203
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
++RL+ +I+ E L+V + G++A+ RL GDMRKALNILQST M+S ++ EE VYL TGNP
Sbjct: 204 RERLQHIIKSEGLSVDEGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNP 263
Score = 100 bits (249), Expect(2) = e-121
Identities = 45/71 (63%), Positives = 64/71 (90%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
+++IS+MK +KG+AL+DIIR++ +F+F+I MP++VR++LIN LADIEYRL+F N+KLQL
Sbjct: 284 FKHISDMKMRKGLALVDIIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSFACNDKLQL 343
Query: 1122 GSLISAFTHTR 1154
G+LISAFT TR
Sbjct: 344 GALISAFTDTR 354
>ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|75132556|sp|Q6YZ54.1|RFC3_ORYSJ RecName:
Full=Replication factor C subunit 3; Short=OsRFC3;
AltName: Full=Activator 1 subunit 3
gi|46805779|dbj|BAD17147.1| putative replication factor
C 36kDa subunit [Oryza sativa Japonica Group]
gi|46806135|dbj|BAD17365.1| putative replication factor
C 36kDa subunit [Oryza sativa Japonica Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa
Japonica Group] gi|215697717|dbj|BAG91711.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein
OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 368 bits (944), Expect(2) = e-121
Identities = 183/240 (76%), Positives = 211/240 (87%)
Frame = +1
Query: 184 KGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
KGKA L + P R PWVEKYRPQSL DVAAHRDI+DTIDRLTNEN+LPHLLLYGPPGT
Sbjct: 24 KGKAPL-SSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGT 82
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTST+LAVARKLYG QY NM+LELNASD+RGIDVVRQQIQDFAS++SLSFG K +VK+V
Sbjct: 83 GKTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMV 142
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEK+T++TRF L+CN+VNKIIPALQSRCTRFRFAPL+ HV
Sbjct: 143 LLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHV 202
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
++RL+ +IQ E L+V D G++A+ RL GDMRKALNILQST M+S ++ EE VYL TGNP
Sbjct: 203 RERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNP 262
Score = 95.5 bits (236), Expect(2) = e-121
Identities = 44/71 (61%), Positives = 61/71 (85%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ IS+MK +KG+AL+DIIR++ +F+F+I MP++VRI+LIN LADIEYRL+F N+KLQL
Sbjct: 283 FKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQL 342
Query: 1122 GSLISAFTHTR 1154
G+LIS FT R
Sbjct: 343 GALISTFTGAR 353
>ref|XP_006390087.1| hypothetical protein EUTSA_v10018756mg [Eutrema salsugineum]
gi|557086521|gb|ESQ27373.1| hypothetical protein
EUTSA_v10018756mg [Eutrema salsugineum]
Length = 361
Score = 357 bits (915), Expect(2) = e-120
Identities = 187/262 (71%), Positives = 214/262 (81%), Gaps = 1/262 (0%)
Frame = +1
Query: 121 TVAMETDEGYVDQQRINLENRKGKAKL-IAEDPSLRRGPWVEKYRPQSLQDVAAHRDIID 297
T AM+ D VD+ + KGK P + PWVEKYRPQSL DVAAHRDIID
Sbjct: 5 TSAMDID---VDENHSRKPSNKGKDIAGFGGPPQSKATPWVEKYRPQSLDDVAAHRDIID 61
Query: 298 TIDRLTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQ 477
TIDRLTNENKLPHLLLYGPPGTGKTST+LAVARKLYG +Y+NM+LELNASDDRGIDVVRQ
Sbjct: 62 TIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKYRNMILELNASDDRGIDVVRQ 121
Query: 478 QIQDFASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNK 657
QIQDFAS+QS S G K +VKLVLLDEADAMTKDAQF+LRRVIEKYTK+TRF L+ N+VNK
Sbjct: 122 QIQDFASTQSFSLG-KSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNK 180
Query: 658 IIPALQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNIL 837
IIPALQSRCTRFRFAPL+ HV RL+ VI+ E L+V++ G++A+ RL GDMRKA+NIL
Sbjct: 181 IIPALQSRCTRFRFAPLDPVHVSQRLKHVIEAEGLDVSESGLAALVRLSNGDMRKAMNIL 240
Query: 838 QSTQMSSPRVDEETVYLATGNP 903
QST M+S ++ EE VYL TGNP
Sbjct: 241 QSTNMASEKITEEEVYLCTGNP 262
Score = 105 bits (263), Expect(2) = e-120
Identities = 46/71 (64%), Positives = 64/71 (90%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
Y+ ISEMKT+KG+A++DI+R++ +F+F+I+MP+ VR+QLIN LADIEYRL+FG N+KLQL
Sbjct: 283 YKNISEMKTRKGLAIVDIVREVTMFVFKISMPSNVRVQLINDLADIEYRLSFGCNDKLQL 342
Query: 1122 GSLISAFTHTR 1154
G++IS FTH R
Sbjct: 343 GAIISTFTHAR 353
>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis] gi|223540562|gb|EEF42129.1|
replication factor C / DNA polymerase III gamma-tau
subunit, putative [Ricinus communis]
Length = 360
Score = 362 bits (928), Expect(2) = e-120
Identities = 185/258 (71%), Positives = 211/258 (81%)
Frame = +1
Query: 130 METDEGYVDQQRINLENRKGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDR 309
M+ DE ++Q + KGK + + PWVEKYRPQSL DVAAHRDI+DTIDR
Sbjct: 8 MDIDEDVKEKQNQLSKPNKGKNVFV----DTKATPWVEKYRPQSLADVAAHRDIVDTIDR 63
Query: 310 LTNENKLPHLLLYGPPGTGKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQD 489
LTNEN+LPHLLLYGPPGTGKTST+LAVARKLYG QY NM+LELNASDDRGIDVVRQQIQD
Sbjct: 64 LTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGIDVVRQQIQD 123
Query: 490 FASSQSLSFGTKLNVKLVLLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPA 669
FAS+QS SF K VKLVLLDEADAMTKDAQF+LRRVIEKYTK TRF L+CN+VNKIIPA
Sbjct: 124 FASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPA 183
Query: 670 LQSRCTRFRFAPLNAGHVQDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQ 849
LQSRCTRFRFAPL+ HV DRL+ VI+ E L+V + G++A+ RL GDMRKALNILQST
Sbjct: 184 LQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKALNILQSTH 243
Query: 850 MSSPRVDEETVYLATGNP 903
M+S ++ EE V+L TGNP
Sbjct: 244 MASQQITEEAVHLCTGNP 261
Score = 99.0 bits (245), Expect(2) = e-120
Identities = 43/71 (60%), Positives = 64/71 (90%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++ ISE+KTKKG+AL+DI+R++ +F+F+I MP++VR+QLIN +ADIEYRL+FG ++KLQL
Sbjct: 282 FKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQL 341
Query: 1122 GSLISAFTHTR 1154
GSL+++FT R
Sbjct: 342 GSLVASFTWAR 352
>ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 361 bits (926), Expect(2) = e-120
Identities = 180/240 (75%), Positives = 208/240 (86%)
Frame = +1
Query: 184 KGKAKLIAEDPSLRRGPWVEKYRPQSLQDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGT 363
KGKA L A ++R PWVEKYRPQSL DVAAHRDI+DTIDRLT+EN+LPHLLLYGPPGT
Sbjct: 21 KGKAPLSAA-AAVRSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGT 79
Query: 364 GKTSTVLAVARKLYGQQYQNMMLELNASDDRGIDVVRQQIQDFASSQSLSFGTKLNVKLV 543
GKTST+LAVARK+YG QY NM+LELNASD+RGI VVRQQIQDFAS+ SLSFG K VKLV
Sbjct: 80 GKTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLV 139
Query: 544 LLDEADAMTKDAQFSLRRVIEKYTKTTRFCLVCNYVNKIIPALQSRCTRFRFAPLNAGHV 723
LLDEADAMTKDAQF+LRRVIEKYT++TRF L+CN+VNKIIPALQSRCTRFRFAPL+ HV
Sbjct: 140 LLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHV 199
Query: 724 QDRLRFVIQEERLNVTDDGISAIARLCCGDMRKALNILQSTQMSSPRVDEETVYLATGNP 903
+RL+ +I+ E L+V + G++A+ RL GDMRKALNILQST M+S ++ EE VYL TGNP
Sbjct: 200 SERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNP 259
Score = 99.8 bits (247), Expect(2) = e-120
Identities = 45/71 (63%), Positives = 60/71 (84%)
Frame = +3
Query: 942 YRYISEMKTKKGMALLDIIRDIPLFIFRITMPAEVRIQLINALADIEYRLTFGTNEKLQL 1121
++YIS+MK +KG+AL+DIIR++ +F+F+I MP VR++LIN LADIEYRLTF N+KLQL
Sbjct: 280 FKYISDMKMRKGLALIDIIREVTMFVFKIKMPCNVRVKLINDLADIEYRLTFACNDKLQL 339
Query: 1122 GSLISAFTHTR 1154
G+LIS FT R
Sbjct: 340 GALISTFTSAR 350