BLASTX nr result
ID: Ephedra27_contig00007625
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00007625
(546 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE77939.1| unknown [Picea sitchensis] 98 1e-18
gb|ADE75679.1| unknown [Picea sitchensis] 98 1e-18
ref|XP_006850071.1| hypothetical protein AMTR_s00022p00212920 [A... 90 4e-16
gb|EOY32516.1| Topoisomerase 6 subunit B isoform 2 [Theobroma ca... 84 2e-14
gb|EOY32515.1| Topoisomerase 6 subunit B isoform 1 [Theobroma ca... 84 2e-14
ref|XP_001778736.1| predicted protein [Physcomitrella patens] gi... 82 6e-14
ref|XP_004956458.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 80 3e-13
emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativ... 79 5e-13
ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group] g... 79 5e-13
tpg|DAA60855.1| TPA: hypothetical protein ZEAMMB73_957890 [Zea m... 79 5e-13
ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vi... 79 5e-13
sp|B8BDQ4.1|TOP6B_ORYSI RecName: Full=DNA topoisomerase 6 subuni... 79 5e-13
emb|CBI16435.3| unnamed protein product [Vitis vinifera] 79 5e-13
gb|AAQ75096.1| topoisomerase 6 subunit B-like protein [Oryza sat... 79 5e-13
dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara... 78 1e-12
ref|XP_006660492.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 78 1e-12
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 78 1e-12
ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thal... 78 1e-12
ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arab... 77 3e-12
ref|XP_006297133.1| hypothetical protein CARUB_v10013135mg [Caps... 77 4e-12
>gb|ADE77939.1| unknown [Picea sitchensis]
Length = 472
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/64 (75%), Positives = 53/64 (82%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
EITE TL+EKL QHVEQVDIEMALEYATQSG++ EARE Y+ A +G F DFHSPVCV
Sbjct: 408 EITETTLREKLAQHVEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCV 467
Query: 181 IRLF 192
IRLF
Sbjct: 468 IRLF 471
>gb|ADE75679.1| unknown [Picea sitchensis]
Length = 676
Score = 98.2 bits (243), Expect = 1e-18
Identities = 48/64 (75%), Positives = 53/64 (82%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
EITE TL+EKL QHVEQVDIEMALEYATQSG++ EARE Y+ A +G F DFHSPVCV
Sbjct: 612 EITETTLREKLAQHVEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCV 671
Query: 181 IRLF 192
IRLF
Sbjct: 672 IRLF 675
>ref|XP_006850071.1| hypothetical protein AMTR_s00022p00212920 [Amborella trichopoda]
gi|548853669|gb|ERN11652.1| hypothetical protein
AMTR_s00022p00212920 [Amborella trichopoda]
Length = 670
Score = 89.7 bits (221), Expect = 4e-16
Identities = 43/64 (67%), Positives = 51/64 (79%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
EITE +KEKLT +VEQVD EMALEYA QSG+S E RE++Y+SA +G+ KF D H PVCV
Sbjct: 606 EITEPIIKEKLTHYVEQVDYEMALEYAAQSGVSEEPREDIYISALEGAPKFLDLHHPVCV 665
Query: 181 IRLF 192
RLF
Sbjct: 666 FRLF 669
>gb|EOY32516.1| Topoisomerase 6 subunit B isoform 2 [Theobroma cacao]
Length = 513
Score = 84.0 bits (206), Expect = 2e-14
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 183
IT+ TLKEKLTQHVE+VD EMALEYATQSG++ E RE++YL + F DFHSP+ V
Sbjct: 450 ITKETLKEKLTQHVEKVDYEMALEYATQSGVNEEPREDMYLQSLYAKSNFFDFHSPIFVF 509
Query: 184 RLF 192
RLF
Sbjct: 510 RLF 512
>gb|EOY32515.1| Topoisomerase 6 subunit B isoform 1 [Theobroma cacao]
Length = 669
Score = 84.0 bits (206), Expect = 2e-14
Identities = 41/63 (65%), Positives = 49/63 (77%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 183
IT+ TLKEKLTQHVE+VD EMALEYATQSG++ E RE++YL + F DFHSP+ V
Sbjct: 606 ITKETLKEKLTQHVEKVDYEMALEYATQSGVNEEPREDMYLQSLYAKSNFFDFHSPIFVF 665
Query: 184 RLF 192
RLF
Sbjct: 666 RLF 668
>ref|XP_001778736.1| predicted protein [Physcomitrella patens]
gi|162669855|gb|EDQ56434.1| predicted protein
[Physcomitrella patens]
Length = 677
Score = 82.4 bits (202), Expect = 6e-14
Identities = 43/65 (66%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFS-DFHSPVC 177
EITE TLK+KLTQHV+QVD EMALE+ATQSGM ARENVYL+A D +F+ +FH+ V
Sbjct: 610 EITEATLKQKLTQHVQQVDSEMALEFATQSGMVDTARENVYLTALDAKREFAVEFHNSVG 669
Query: 178 VIRLF 192
V +LF
Sbjct: 670 VFKLF 674
>ref|XP_004956458.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Setaria italica]
Length = 692
Score = 80.1 bits (196), Expect = 3e-13
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T K+ LTQHVEQVD EMAL+YA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 628 EVTEMTFKDCLTQHVEQVDYEMALDYAMQSGVSEEPREAIYLNSLEGSYKFVDFQSPVFV 687
Query: 181 IR 186
R
Sbjct: 688 FR 689
>emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativa Indica Group]
Length = 696
Score = 79.3 bits (194), Expect = 5e-13
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T ++ LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 691
Query: 181 IR 186
R
Sbjct: 692 FR 693
>ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group]
gi|49387842|dbj|BAD26507.1| putative topoisomerase 6
subunit B [Oryza sativa Japonica Group]
gi|113630994|dbj|BAF24675.1| Os09g0279600 [Oryza sativa
Japonica Group] gi|222641206|gb|EEE69338.1| hypothetical
protein OsJ_28656 [Oryza sativa Japonica Group]
Length = 696
Score = 79.3 bits (194), Expect = 5e-13
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T ++ LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 691
Query: 181 IR 186
R
Sbjct: 692 FR 693
>tpg|DAA60855.1| TPA: hypothetical protein ZEAMMB73_957890 [Zea mays]
Length = 232
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/65 (60%), Positives = 48/65 (73%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T ++ LTQHVEQVD EMAL+YA QSG+S E RE +YL++ +GS KF D SPV V
Sbjct: 168 EVTEMTFRDCLTQHVEQVDYEMALDYAMQSGVSEEPREAIYLNSLEGSYKFVDLQSPVFV 227
Query: 181 IRLFH 195
R H
Sbjct: 228 FRFVH 232
>ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera]
Length = 656
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 183
IT+ TL EKL +HVEQVD EMALEYATQSG+S E RE +YL + + F DFHSPV
Sbjct: 593 ITKQTLSEKLAKHVEQVDYEMALEYATQSGVSEEPREAIYLQSLEDGKNFIDFHSPVFAF 652
Query: 184 RLF 192
RL+
Sbjct: 653 RLY 655
>sp|B8BDQ4.1|TOP6B_ORYSI RecName: Full=DNA topoisomerase 6 subunit B; Short=OsTOP6B
gi|218201815|gb|EEC84242.1| hypothetical protein
OsI_30680 [Oryza sativa Indica Group]
Length = 696
Score = 79.3 bits (194), Expect = 5e-13
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T ++ LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 691
Query: 181 IR 186
R
Sbjct: 692 FR 693
>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 79.3 bits (194), Expect = 5e-13
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 183
IT+ TL EKL +HVEQVD EMALEYATQSG+S E RE +YL + + F DFHSPV
Sbjct: 610 ITKQTLSEKLAKHVEQVDYEMALEYATQSGVSEEPREAIYLQSLEDGKNFIDFHSPVFAF 669
Query: 184 RLF 192
RL+
Sbjct: 670 RLY 672
>gb|AAQ75096.1| topoisomerase 6 subunit B-like protein [Oryza sativa Japonica
Group]
Length = 615
Score = 79.3 bits (194), Expect = 5e-13
Identities = 40/62 (64%), Positives = 48/62 (77%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T ++ LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 551 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 610
Query: 181 IR 186
R
Sbjct: 611 FR 612
>dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
Length = 694
Score = 78.2 bits (191), Expect = 1e-12
Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFD-GSGKFSDFHSPVCV 180
IT+ TLKEKL +HVEQVD EMALEYATQSG+S E REN+YL D F D HSP V
Sbjct: 630 ITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFV 689
Query: 181 IRL 189
RL
Sbjct: 690 FRL 692
>ref|XP_006660492.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Oryza brachyantha]
Length = 696
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/62 (62%), Positives = 48/62 (77%)
Frame = +1
Query: 1 EITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 180
E+TE T ++ LTQHVEQVD EMALEYA QSG+S E RE +L++ +GS KF+DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREAFFLNSLEGSYKFTDFQSPVFV 691
Query: 181 IR 186
R
Sbjct: 692 FR 693
>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
topoisomerase 6 subunit B-like [Cucumis sativus]
Length = 696
Score = 78.2 bits (191), Expect = 1e-12
Identities = 37/62 (59%), Positives = 47/62 (75%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 183
IT TL++KL QHVEQVD EMA+EYATQSG S EA+E +Y+ + D + F+DF SP+ V
Sbjct: 633 ITNETLRDKLAQHVEQVDHEMAMEYATQSGASAEAKEEMYIQSLDATHSFTDFQSPLFVF 692
Query: 184 RL 189
RL
Sbjct: 693 RL 694
>ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA
topoisomerase 6 subunit B; Short=AtTOP6B; AltName:
Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName:
Full=Protein ELONGATED HYPOCOTYL 6; AltName:
Full=Protein ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1|
topoisomerase 6 subunit B [Arabidopsis thaliana]
gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit
B [Arabidopsis thaliana]
Length = 670
Score = 78.2 bits (191), Expect = 1e-12
Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFD-GSGKFSDFHSPVCV 180
IT+ TLKEKL +HVEQVD EMALEYATQSG+S E REN+YL D F D HSP V
Sbjct: 606 ITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFV 665
Query: 181 IRL 189
RL
Sbjct: 666 FRL 668
>ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp.
lyrata] gi|297331244|gb|EFH61663.1| hypothetical protein
ARALYDRAFT_318827 [Arabidopsis lyrata subsp. lyrata]
Length = 691
Score = 77.0 bits (188), Expect = 3e-12
Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFD-GSGKFSDFHSPVCV 180
IT+ TLKEKL +HVEQVD EMALEYATQSG+S E REN+YL D F D HSP V
Sbjct: 627 ITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPNFV 686
Query: 181 IRL 189
RL
Sbjct: 687 FRL 689
>ref|XP_006297133.1| hypothetical protein CARUB_v10013135mg [Capsella rubella]
gi|482565842|gb|EOA30031.1| hypothetical protein
CARUB_v10013135mg [Capsella rubella]
Length = 670
Score = 76.6 bits (187), Expect = 4e-12
Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 4 ITEGTLKEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGS-GKFSDFHSPVCV 180
IT+ TL EKL QHVEQVD EMALEYATQSG+S E REN+YL D + F D HSP V
Sbjct: 606 ITKETLTEKLAQHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDSNKTNFIDLHSPTFV 665
Query: 181 IRL 189
RL
Sbjct: 666 FRL 668