BLASTX nr result
ID: Ephedra27_contig00007605
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00007605
(553 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE77939.1| unknown [Picea sitchensis] 96 4e-18
gb|ADE75679.1| unknown [Picea sitchensis] 96 4e-18
ref|XP_006850071.1| hypothetical protein AMTR_s00022p00212920 [A... 87 3e-15
gb|EOY32516.1| Topoisomerase 6 subunit B isoform 2 [Theobroma ca... 81 2e-13
gb|EOY32515.1| Topoisomerase 6 subunit B isoform 1 [Theobroma ca... 81 2e-13
ref|XP_001778736.1| predicted protein [Physcomitrella patens] gi... 79 6e-13
ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vi... 79 9e-13
emb|CBI16435.3| unnamed protein product [Vitis vinifera] 79 9e-13
emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativ... 77 2e-12
ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group] g... 77 2e-12
tpg|DAA60855.1| TPA: hypothetical protein ZEAMMB73_957890 [Zea m... 77 2e-12
sp|B8BDQ4.1|TOP6B_ORYSI RecName: Full=DNA topoisomerase 6 subuni... 77 2e-12
gb|AAQ75096.1| topoisomerase 6 subunit B-like protein [Oryza sat... 77 2e-12
gb|EXB48402.1| DNA topoisomerase 6 subunit B [Morus notabilis] 77 3e-12
ref|XP_004956458.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 77 3e-12
ref|XP_006297133.1| hypothetical protein CARUB_v10013135mg [Caps... 77 4e-12
ref|XP_006660492.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 76 5e-12
ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-lik... 76 5e-12
ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago trun... 75 8e-12
dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara... 75 1e-11
>gb|ADE77939.1| unknown [Picea sitchensis]
Length = 472
Score = 96.3 bits (238), Expect = 4e-18
Identities = 48/64 (75%), Positives = 52/64 (81%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
EITE TL EKL QHVEQVDIEMALEYATQSG++ EARE Y+ A +G F DFHSPVCV
Sbjct: 408 EITETTLREKLAQHVEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCV 467
Query: 373 IRLF 362
IRLF
Sbjct: 468 IRLF 471
>gb|ADE75679.1| unknown [Picea sitchensis]
Length = 676
Score = 96.3 bits (238), Expect = 4e-18
Identities = 48/64 (75%), Positives = 52/64 (81%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
EITE TL EKL QHVEQVDIEMALEYATQSG++ EARE Y+ A +G F DFHSPVCV
Sbjct: 612 EITETTLREKLAQHVEQVDIEMALEYATQSGITQEARETTYIRALEGVQNFYDFHSPVCV 671
Query: 373 IRLF 362
IRLF
Sbjct: 672 IRLF 675
>ref|XP_006850071.1| hypothetical protein AMTR_s00022p00212920 [Amborella trichopoda]
gi|548853669|gb|ERN11652.1| hypothetical protein
AMTR_s00022p00212920 [Amborella trichopoda]
Length = 670
Score = 86.7 bits (213), Expect = 3e-15
Identities = 42/64 (65%), Positives = 50/64 (78%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
EITE + EKLT +VEQVD EMALEYA QSG+S E RE++Y+SA +G+ KF D H PVCV
Sbjct: 606 EITEPIIKEKLTHYVEQVDYEMALEYAAQSGVSEEPREDIYISALEGAPKFLDLHHPVCV 665
Query: 373 IRLF 362
RLF
Sbjct: 666 FRLF 669
>gb|EOY32516.1| Topoisomerase 6 subunit B isoform 2 [Theobroma cacao]
Length = 513
Score = 80.9 bits (198), Expect = 2e-13
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
IT+ TL EKLTQHVE+VD EMALEYATQSG++ E RE++YL + F DFHSP+ V
Sbjct: 450 ITKETLKEKLTQHVEKVDYEMALEYATQSGVNEEPREDMYLQSLYAKSNFFDFHSPIFVF 509
Query: 370 RLF 362
RLF
Sbjct: 510 RLF 512
>gb|EOY32515.1| Topoisomerase 6 subunit B isoform 1 [Theobroma cacao]
Length = 669
Score = 80.9 bits (198), Expect = 2e-13
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
IT+ TL EKLTQHVE+VD EMALEYATQSG++ E RE++YL + F DFHSP+ V
Sbjct: 606 ITKETLKEKLTQHVEKVDYEMALEYATQSGVNEEPREDMYLQSLYAKSNFFDFHSPIFVF 665
Query: 370 RLF 362
RLF
Sbjct: 666 RLF 668
>ref|XP_001778736.1| predicted protein [Physcomitrella patens]
gi|162669855|gb|EDQ56434.1| predicted protein
[Physcomitrella patens]
Length = 677
Score = 79.3 bits (194), Expect = 6e-13
Identities = 42/65 (64%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFS-DFHSPVC 377
EITE TL +KLTQHV+QVD EMALE+ATQSGM ARENVYL+A D +F+ +FH+ V
Sbjct: 610 EITEATLKQKLTQHVQQVDSEMALEFATQSGMVDTARENVYLTALDAKREFAVEFHNSVG 669
Query: 376 VIRLF 362
V +LF
Sbjct: 670 VFKLF 674
>ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera]
Length = 656
Score = 78.6 bits (192), Expect = 9e-13
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
IT+ TL EKL +HVEQVD EMALEYATQSG+S E RE +YL + + F DFHSPV
Sbjct: 593 ITKQTLSEKLAKHVEQVDYEMALEYATQSGVSEEPREAIYLQSLEDGKNFIDFHSPVFAF 652
Query: 370 RLF 362
RL+
Sbjct: 653 RLY 655
>emb|CBI16435.3| unnamed protein product [Vitis vinifera]
Length = 673
Score = 78.6 bits (192), Expect = 9e-13
Identities = 39/63 (61%), Positives = 46/63 (73%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
IT+ TL EKL +HVEQVD EMALEYATQSG+S E RE +YL + + F DFHSPV
Sbjct: 610 ITKQTLSEKLAKHVEQVDYEMALEYATQSGVSEEPREAIYLQSLEDGKNFIDFHSPVFAF 669
Query: 370 RLF 362
RL+
Sbjct: 670 RLY 672
>emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativa Indica Group]
Length = 696
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 691
Query: 373 IR 368
R
Sbjct: 692 FR 693
>ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group]
gi|49387842|dbj|BAD26507.1| putative topoisomerase 6
subunit B [Oryza sativa Japonica Group]
gi|113630994|dbj|BAF24675.1| Os09g0279600 [Oryza sativa
Japonica Group] gi|222641206|gb|EEE69338.1| hypothetical
protein OsJ_28656 [Oryza sativa Japonica Group]
Length = 696
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 691
Query: 373 IR 368
R
Sbjct: 692 FR 693
>tpg|DAA60855.1| TPA: hypothetical protein ZEAMMB73_957890 [Zea mays]
Length = 232
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/65 (60%), Positives = 47/65 (72%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMAL+YA QSG+S E RE +YL++ +GS KF D SPV V
Sbjct: 168 EVTEMTFRDCLTQHVEQVDYEMALDYAMQSGVSEEPREAIYLNSLEGSYKFVDLQSPVFV 227
Query: 373 IRLFH 359
R H
Sbjct: 228 FRFVH 232
>sp|B8BDQ4.1|TOP6B_ORYSI RecName: Full=DNA topoisomerase 6 subunit B; Short=OsTOP6B
gi|218201815|gb|EEC84242.1| hypothetical protein
OsI_30680 [Oryza sativa Indica Group]
Length = 696
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 691
Query: 373 IR 368
R
Sbjct: 692 FR 693
>gb|AAQ75096.1| topoisomerase 6 subunit B-like protein [Oryza sativa Japonica
Group]
Length = 615
Score = 77.4 bits (189), Expect = 2e-12
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMALEYA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 551 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREALYLNSLEGSYKFIDFQSPVFV 610
Query: 373 IR 368
R
Sbjct: 611 FR 612
>gb|EXB48402.1| DNA topoisomerase 6 subunit B [Morus notabilis]
Length = 642
Score = 77.0 bits (188), Expect = 3e-12
Identities = 35/63 (55%), Positives = 49/63 (77%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
+T+ TL+EKL Q+VEQVD EMALEYATQSG+S E RE+++L + + ++ D H+P+ V
Sbjct: 579 VTKETLMEKLAQYVEQVDYEMALEYATQSGVSEEPRESIFLQSLEAEDQYVDLHNPIFVF 638
Query: 370 RLF 362
RLF
Sbjct: 639 RLF 641
>ref|XP_004956458.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Setaria italica]
Length = 692
Score = 77.0 bits (188), Expect = 3e-12
Identities = 39/62 (62%), Positives = 47/62 (75%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMAL+YA QSG+S E RE +YL++ +GS KF DF SPV V
Sbjct: 628 EVTEMTFKDCLTQHVEQVDYEMALDYAMQSGVSEEPREAIYLNSLEGSYKFVDFQSPVFV 687
Query: 373 IR 368
R
Sbjct: 688 FR 689
>ref|XP_006297133.1| hypothetical protein CARUB_v10013135mg [Capsella rubella]
gi|482565842|gb|EOA30031.1| hypothetical protein
CARUB_v10013135mg [Capsella rubella]
Length = 670
Score = 76.6 bits (187), Expect = 4e-12
Identities = 41/63 (65%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGS-GKFSDFHSPVCV 374
IT+ TL EKL QHVEQVD EMALEYATQSG+S E REN+YL D + F D HSP V
Sbjct: 606 ITKETLTEKLAQHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDSNKTNFIDLHSPTFV 665
Query: 373 IRL 365
RL
Sbjct: 666 FRL 668
>ref|XP_006660492.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Oryza brachyantha]
Length = 696
Score = 76.3 bits (186), Expect = 5e-12
Identities = 39/62 (62%), Positives = 47/62 (75%)
Frame = -1
Query: 553 EITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCV 374
E+TE T + LTQHVEQVD EMALEYA QSG+S E RE +L++ +GS KF+DF SPV V
Sbjct: 632 EVTEMTFRDCLTQHVEQVDYEMALEYAMQSGVSEEPREAFFLNSLEGSYKFTDFQSPVFV 691
Query: 373 IR 368
R
Sbjct: 692 FR 693
>ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus]
gi|449525918|ref|XP_004169963.1| PREDICTED: DNA
topoisomerase 6 subunit B-like [Cucumis sativus]
Length = 696
Score = 76.3 bits (186), Expect = 5e-12
Identities = 37/62 (59%), Positives = 46/62 (74%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
IT TL +KL QHVEQVD EMA+EYATQSG S EA+E +Y+ + D + F+DF SP+ V
Sbjct: 633 ITNETLRDKLAQHVEQVDHEMAMEYATQSGASAEAKEEMYIQSLDATHSFTDFQSPLFVF 692
Query: 370 RL 365
RL
Sbjct: 693 RL 694
>ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula]
gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit
B [Medicago truncatula]
Length = 671
Score = 75.5 bits (184), Expect = 8e-12
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFDGSGKFSDFHSPVCVI 371
+T+ T EKL +HVEQVD EMALE+ATQSG+S E RE +Y+ A D K D H+P+ V
Sbjct: 608 VTKETFSEKLAKHVEQVDYEMALEFATQSGVSEEPRETIYIQALDAENKTIDLHAPIFVF 667
Query: 370 RLF 362
R+F
Sbjct: 668 RVF 670
>dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
Length = 694
Score = 75.1 bits (183), Expect = 1e-11
Identities = 40/63 (63%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = -1
Query: 550 ITEGTLIEKLTQHVEQVDIEMALEYATQSGMSLEARENVYLSAFD-GSGKFSDFHSPVCV 374
IT+ TL EKL +HVEQVD EMALEYATQSG+S E REN+YL D F D HSP V
Sbjct: 630 ITKETLKEKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFV 689
Query: 373 IRL 365
RL
Sbjct: 690 FRL 692