BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00007360
         (1819 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308172.1| predicted protein [Populus trichocarpa]           158   8e-36
emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulga...   154   1e-34
emb|CCA66153.1| hypothetical protein [Beta vulgaris subsp. vulga...   144   2e-31
emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulga...   139   5e-30
gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao]   138   9e-30
gb|EOX96783.1| Uncharacterized protein TCM_005954 [Theobroma cacao]   135   6e-29
gb|EOY34748.1| Uncharacterized protein TCM_042328 [Theobroma cacao]   135   8e-29
gb|EOY25451.1| Uncharacterized protein TCM_016759 [Theobroma cacao]   134   1e-28
ref|XP_002303192.1| predicted protein [Populus trichocarpa]           133   2e-28
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   131   8e-28
gb|EOY19200.1| Retrotransposon, unclassified-like protein [Theob...   130   1e-27
emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulga...   130   2e-27
gb|EOY17514.1| Uncharacterized protein TCM_042330 [Theobroma cacao]   130   2e-27
ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein A...   130   2e-27
gb|EOY02238.1| Uncharacterized protein TCM_016762 [Theobroma cacao]   129   4e-27
gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]   127   2e-26
ref|XP_004299997.1| PREDICTED: putative ribonuclease H protein A...   125   5e-26
gb|EOY34747.1| Uncharacterized protein TCM_042327 [Theobroma cacao]   125   8e-26
gb|EOY02234.1| Uncharacterized protein TCM_011921 [Theobroma cacao]   124   1e-25
ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis ...   124   1e-25

>ref|XP_002308172.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  158 bits (399), Expect = 8e-36
 Identities = 126/448 (28%), Positives = 196/448 (43%), Gaps = 22/448 (4%)
 Frame = +3

Query: 3    KMIKFWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYA----- 167
            K IKFW D W   G+LAD+FP  F           R  N  E    ++ + +G+A     
Sbjct: 229  KRIKFWLDDWTATGSLADQFPALF-----------RLTNDKEASLDKMGIWDGHAWHWLF 277

Query: 168  ---NLSRNRDQSWKEIKQLVLSELPPLLDNKRDSLIWSAHPQGKFTVKS-CYLLESNRNL 335
                  R R+    +    +LS++  L  +  D LIW A+  G+F++KS C LL     +
Sbjct: 278  TWSRPLRGRNYGLLDRMTAILSKVQ-LDKDAEDRLIWKANSTGRFSIKSLCGLLSPKPPM 336

Query: 336  PRPIRVSTGYWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQ--VDPLCPLCGQQEESL 509
                   TG W   + PK+  F W+ + K + T+ +L+RRGI       CP+C  +EES+
Sbjct: 337  DTSFSF-TGIWRGIVPPKVEVFCWMAIIKKINTRSMLVRRGILDISAAACPICLAEEESV 395

Query: 510  THLFFFCSFLNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCW 689
             H+   C     +W     +W   W    ++ ++++ W S       K+ W + L  + W
Sbjct: 396  DHILLHCHKHWIVWSKIINWWGLAWCCPKNLAALFSQWDSLVYGKFQKKAWLMLLFSVAW 455

Query: 690  SIWLERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKC---QVSDSETSIIK--EWHIP 854
            S+WL RN+ +F +   N  T+F      I+     W K      S S + +++  E  + 
Sbjct: 456  SLWLHRNDVIFKQSTPNYDTLFI----LIITRLCFWIKAIEPDFSYSASDLLRSAEGLLR 511

Query: 855  YSPQEDSFVEVRWFPPTGNGIKFNFDGSYRG-GNVVGCGGIFRDSEGRFLYGFSFKA--- 1022
            ++  ++  V V W P   N  K+N DGS  G     G GG+ R+  G  L  FS      
Sbjct: 512  WTNSKNQRVVVVWSPLMLNSFKWNVDGSSLGKSGPSGIGGVLRNHNGIILGIFSLSVGIL 571

Query: 1023 -SGNSALIAEAKSLHFGSRLIRRFMAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWE 1199
             S  + L A  K++   +   R     I IE DS ++I         PW   N    I  
Sbjct: 572  DSNVAELKAVVKAIELSAFNCRLHHKHIIIESDSANVISWMNSPHNRPWRHHNLFSSIQR 631

Query: 1200 NLAGFDT-RFQHTFREGNKVADLLANHG 1280
              + F +  F H+ RE N +AD +A  G
Sbjct: 632  AASCFGSLTFTHSLRESNHMADHMAKQG 659


>emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1380

 Score =  154 bits (389), Expect = 1e-34
 Identities = 123/446 (27%), Positives = 184/446 (41%), Gaps = 19/446 (4%)
 Frame = +3

Query: 15   FWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELL--DLELSVSEGYANLSRNRD 188
            FW D+WL    L  +FPR +   + ++      P         L  + S  +A   R RD
Sbjct: 938  FWHDQWLGPKPLKAQFPRLYLLATNKM-----APVASHCFWDGLAWAWSFSWARHHRARD 992

Query: 189  QSWKEIKQLVLSELPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYW 368
               KE K L L ++  L  + +DSL+WS H  G F+  S     +  NLP       G W
Sbjct: 993  LDEKE-KLLELLDMVHLDPSNQDSLVWSYHKSGSFSTSSFTAEMAKANLPPHTDAIKGVW 1051

Query: 369  NIDLIP-KINSFWWLCLKKCLPTKDLLLRRGI--QVDPLCPLCGQQEESLTHLFFFCSFL 539
             + L+P ++  F W+ L   + T+  L   GI  Q + +C LC    E   HL   C F 
Sbjct: 1052 -VGLVPHRVEIFVWMALLGRINTRCKLASIGIIPQSENICVLCNTSPEQHNHLLLHCPFS 1110

Query: 540  NDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCWSIWLERNNRV 719
              +W  +   W+  WV    +  +++ W SP  +   K++W  +   + WSIW ERN+R+
Sbjct: 1111 LSLWNWWLDLWRLKWVLPETLRGLFDQWLSPIKTPFFKKVWAATFFIISWSIWKERNSRI 1170

Query: 720  FGRPHSNPST----IFFRARRFI--MDNAMCWKKCQVSDSETSIIKEWHIPYSPQEDSFV 881
            F    S PS+    I  R   +I   D A  +    +  +   ++    IP+  Q     
Sbjct: 1171 FENTSSPPSSLHDLILLRLGWWISGWDEAFPYSPTDIQRNPQCLVWGGKIPHPLQAPHPS 1230

Query: 882  EVRWFPPTGNGIKFNFDGSYRGGN-VVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKS 1058
               W PP    +K+N D SY   N     GG+ R+  G F+  FS          AE  +
Sbjct: 1231 SAIWTPPDHGSLKWNVDASYNPLNHRAAVGGVLRNHLGHFICVFSVPVPPMEINFAEVLA 1290

Query: 1059 LHFGSRL----IRRFMAPITIEGDSLSIIKMAKKEWEHPWYLS---NFLEGIWENLAGFD 1217
            +H    +    I    + + IE DS + +     +   PW L    NF+        G  
Sbjct: 1291 IHRALSISHSDITLQSSLLVIESDSANAVSWCNAKQGGPWNLGFQLNFIRSAGSR--GLK 1348

Query: 1218 TRFQHTFREGNKVADLLANHGYEEMD 1295
                H  R  N+VAD LA  G    D
Sbjct: 1349 IEIIHKGRSSNQVADALAKQGLSRRD 1374


>emb|CCA66153.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score =  144 bits (362), Expect = 2e-31
 Identities = 123/459 (26%), Positives = 190/459 (41%), Gaps = 32/459 (6%)
 Frame = +3

Query: 15   FWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYANLSRNRDQS 194
            FW D W+    L  + PR F               +    D  +S+   +  L       
Sbjct: 938  FWHDVWVGANPLKTECPRLF--------------RLSLQQDAYVSLCGFWDGLCWRWSLL 983

Query: 195  W-KEIKQLVLSELPPLLD---------NKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRP 344
            W + ++Q  L E   LL+         + +D LIW+    G F+VKS  L  +N    R 
Sbjct: 984  WSRPLRQRDLHEQATLLNIINRAVLQKDGKDHLIWAPSKSGIFSVKSFSLELANMEESRS 1043

Query: 345  IRVSTGYWNIDLIP-KINSFWWLCLKKCLPTKDLLLRRGI--QVDPLCPLCGQQEESLTH 515
               +   W   L+P +I  F W  +   L TK+ LL   +    D  C  C    ES  H
Sbjct: 1044 FEATKELWK-GLVPFRIEIFVWFVILGRLNTKEKLLNLKLISNEDSSCIFCSSSIESTNH 1102

Query: 516  LFFFCSFLNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCWSI 695
            LF  CS+  ++W  +++ W   WV    I  ++  W  P+     K++W      + W+I
Sbjct: 1103 LFLECSYSKELWHWWFQIWNVAWVLPSSIKELFTHWIPPFKGKFFKKVWMSCFFIILWTI 1162

Query: 696  WLERNNRVF-GRPHSNPSTIFFRARRFIMDNAMCWKKC---QVSDSETSIIK-----EWH 848
            W ERN+R+F  +P+S       + +  I+     W K        S   I++      W 
Sbjct: 1163 WKERNSRIFQEKPNSK-----LQLKELILLRLGWWIKGWNEPFPYSAEDIVRNPLCLNWL 1217

Query: 849  IPYSPQE---DSFVEVRWFPPTGNGIKFNFDGSYRGG-NVVGCGGIFRDSEGRFLYGFS- 1013
             P  PQ+    +     W PP+   +K+N D S +        GG+ RD +G F+  FS 
Sbjct: 1218 TPVKPQKAIMPAPFPQHWSPPSIGSLKWNVDASIKSSLQKSSIGGVLRDHKGNFICMFSS 1277

Query: 1014 ---FKASGNSALIAEAKSLHFGSRLIRRFMAPITIEGDSLSIIKMAKKEWEHPWYLSNFL 1184
               F    N+ ++A  ++L   +   R + + I +E DS + +   KK+   PW L NF+
Sbjct: 1278 PIPFMEINNAEVLAIHRALKISAACPRIWGSHIIVESDSSNAVSWCKKDASGPWNL-NFI 1336

Query: 1185 EGIWENLAGFDTRFQHTF--REGNKVADLLANHGYEEMD 1295
                 N A  D +   T+  RE N VAD LA  G    D
Sbjct: 1337 LNFIRNSASKDPKVSITYKGRETNMVADALAKQGLSRWD 1375


>emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score =  139 bits (349), Expect = 5e-30
 Identities = 122/451 (27%), Positives = 187/451 (41%), Gaps = 24/451 (5%)
 Frame = +3

Query: 15   FWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYANLSRNRD-Q 191
            FW D WL    L  +FPR F+ V   +       +       E   +  ++ + R RD +
Sbjct: 938  FWLDTWLGDSPLKLRFPRLFTIVDNPMAYIA---SCGSWCGREWVWNFSWSRVFRPRDAE 994

Query: 192  SWKEIKQLVLSE-LPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLP--RPIRVSTG 362
             W+E++ L+ S  L P  D   D LIW+ H  G F+VKSC    +N  L     IR+   
Sbjct: 995  EWEELQGLLGSVCLSPSTD---DRLIWTPHKSGAFSVKSCSKELTNTALKPQSKIRIWGR 1051

Query: 363  YWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGI--QVDPLCPLCGQQEESLTHLFFFCSF 536
             W   + P+I  F W+ L   L ++  L    I    D +C +C    E+  HL   C F
Sbjct: 1052 LWRGLIPPRIEVFSWVALLGKLNSRQKLATLNIIPPDDAVCIMCNGAPETSDHLLLHCPF 1111

Query: 537  LNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCWSIWLERNNR 716
             + IW  +   W  +WVF  ++   +  W     +   +++W      + W+IW ERN R
Sbjct: 1112 ASSIWLWWLGIWNVSWVFPKNLFEAFEQWYCHKKNPFFRKVWCSIFSIIIWTIWKERNAR 1171

Query: 717  VFGRPHSNPSTIFFRARRFIMDNAMCWKKCQVSDSETSIIKEWHIPYSPQED-------- 872
            +F R  S  S    + +  ++   M W K        SI++    P     D        
Sbjct: 1172 IF-RGISCSSN---KLQDLVIIRLMWWIKGWGEAFPYSIVEVLRHPQCLSWDYLKAAPAA 1227

Query: 873  ---SFVEVRWFPPTGNGIKFNFDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKASGNSALI 1043
               S   + W PP    +K+N D S   G     GG+ R+S+G F+  FS          
Sbjct: 1228 TAVSVDGMLWSPPNDGVMKWNVDASVNAGR-SAIGGVLRNSQGIFVCVFSCPIPSIEINS 1286

Query: 1044 AEAKSLHFGSRLIRRF----MAPITIEGDSLSIIKMAKKEWEHPWYLS---NFLEGIWEN 1202
            AE  +++   ++   F     AP+ +E DS + +  + +    PW L+   NF+      
Sbjct: 1287 AEIIAIYRAMQICYSFEFLKRAPLVLESDSANAVMWSNENEGGPWNLNFQLNFIRN--AR 1344

Query: 1203 LAGFDTRFQHTFREGNKVADLLANHGYEEMD 1295
             AG +    H  R  N VAD LA  G    D
Sbjct: 1345 KAGLNISIVHKKRSSNAVADALAKQGLSRTD 1375


>gb|EOY14356.1| Uncharacterized protein TCM_033752 [Theobroma cacao]
          Length = 2251

 Score =  138 bits (347), Expect = 9e-30
 Identities = 108/417 (25%), Positives = 192/417 (46%), Gaps = 7/417 (1%)
 Frame = +3

Query: 144  LSVSEGYANLSRNRDQSWKEIKQLVLSELP--PLLDNKRDSLIWSAHPQGKFTVKSCYLL 317
            + V + + N S N ++    ++Q V+ E+   P+    +D   W+  P G F+ KS + L
Sbjct: 1838 VQVCDFFTNNSWNIEKLKTVLQQEVVDEIAKIPIDTMNKDEAYWTPTPNGDFSTKSAWQL 1897

Query: 318  ESNRNLPRPIRVSTGYWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQ 497
               R +  P  V    W+  +    + F W  L   +P +  +  +G+Q+   C  C + 
Sbjct: 1898 IRKRKVVNP--VFNFIWHKTVPLTTSFFLWRLLHDWIPVELKMKSKGLQLASRCRCC-KS 1954

Query: 498  EESLTHLFFFCSFLNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLK--RIWKIS 671
            EES+ H+ +       +W  F K ++   +    I  I  AW   +S D  K   I  + 
Sbjct: 1955 EESIMHVMWDNPVAMQVWNYFAKLFQILIINPCTINQIIGAWF--YSGDYCKPGHIRTLV 2012

Query: 672  LPHLCWSIWLERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKCQVS-DSETSIIKEWH 848
               + W +W+ERN+         P+ + +R  + I   ++  +  +     +  I +EW 
Sbjct: 2013 PLFILWFLWVERNDAKHRNLGMYPNRVVWRVLKLIQQLSLGQQLLKWQWKGDKQIAQEWG 2072

Query: 849  IPYSPQEDSFVEV-RWFPPTGNGIKFNFDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKAS 1025
            I +  +  +  +V  W  P+    K N DGS +  +    GGI RD  G  ++GFS    
Sbjct: 2073 IIFQAESLAPPKVFSWHKPSLGEFKLNVDGSAKQSHNAAGGGILRDHAGEMVFGFSENLG 2132

Query: 1026 GNSALIAEAKSLHFGSRLIRRF-MAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWEN 1202
              ++L AE  +L+ G  L R + +  + IE D++S+I++ +     P  +   +  + + 
Sbjct: 2133 TQNSLQAELLALYRGLILCRDYNIRRLWIEMDAISVIRLLQGNHRGPHAIRYLMVSLRQL 2192

Query: 1203 LAGFDTRFQHTFREGNKVADLLANHGYEEMDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
            L+ F  RF H FREGN+ AD LAN G+E  ++Q F  A   ++  L  D+    ++R
Sbjct: 2193 LSHFSFRFSHIFREGNQAADFLANRGHEHQNLQVFTVAQGKLRGMLCLDQTSFPYVR 2249


>gb|EOX96783.1| Uncharacterized protein TCM_005954 [Theobroma cacao]
          Length = 1134

 Score =  135 bits (340), Expect = 6e-29
 Identities = 102/387 (26%), Positives = 181/387 (46%), Gaps = 7/387 (1%)
 Frame = +3

Query: 234  PLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYWNIDLIPKINSFWWLC 413
            P   ++ D   W+    G F+ +S   +   R     +   +  W+  +   I+ F W  
Sbjct: 751  PFDKSREDVAYWTLTSNGDFSTRSAGEMIRQRQTSNAL--CSFIWHRSIPLSISFFLWKT 808

Query: 414  LKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTNWVFS 593
            L   +P +  +  +GIQ+   C +C   EESL H+ +       +W  F K ++   +  
Sbjct: 809  LHNWIPVELRMKEKGIQLASKC-VCCNSEESLIHVLWENPVAKQVWNFFAKLFQIYILNP 867

Query: 594  GDIISIWNAWKSPWSSDGLKR-IWKISLP-HLCWSIWLERNNRVFGRPHSNPSTIFFRAR 767
              +  I  AW    S D +++  +++ LP  +CW +WLERN+         P  + +R  
Sbjct: 868  RHVSQIIWAWYV--SGDYVRKGHFRVLLPLFICWFLWLERNDAKHRHTGLYPDRVIWRTM 925

Query: 768  ---RFIMDNAMCWKKCQVSDSETSIIKEWHIPYSPQEDSFVEV-RWFPPTGNGIKFNFDG 935
               R + D ++  +     D++ + +  +  P  PQ+ +  ++  W  P+    K N DG
Sbjct: 926  KHCRQLYDGSLLQQWQWKGDTDIAAMLGFSFP--PQQHASPQIIYWKKPSIGEYKLNVDG 983

Query: 936  SYRGGNVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFGSRLIR-RFMAPITIE 1112
            S R G     GG+ RD  G+ ++GFS      ++L AE ++L  G  L + R +  + IE
Sbjct: 984  SSRNGLHAATGGVLRDHTGKLIFGFSENIGPCNSLQAELRALLRGLLLCKERHIEKLWIE 1043

Query: 1113 GDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREGNKVADLLANHGYEEM 1292
             D+L+ I++ +   + P+ +   LE I   L+ F  R  HTFREGNK AD L+N G++  
Sbjct: 1044 MDALAAIQLIQPSKKGPYDIRYLLESIRMCLSSFSYRLSHTFREGNKAADYLSNEGHKHQ 1103

Query: 1293 DIQFFDNAPVFIKPALFDDKIGTKFLR 1373
            ++  F  A   +   L  D++   ++R
Sbjct: 1104 NLCVFTEAQGQLHGMLKLDRLNLPYVR 1130


>gb|EOY34748.1| Uncharacterized protein TCM_042328 [Theobroma cacao]
          Length = 910

 Score =  135 bits (339), Expect = 8e-29
 Identities = 106/415 (25%), Positives = 187/415 (45%), Gaps = 5/415 (1%)
 Frame = +3

Query: 144  LSVSEGYANLSRNRDQSWKEIKQLVLSELP--PLLDNKRDSLIWSAHPQGKFTVKSCYLL 317
            + V + + N S N ++    ++Q V+ E+   P+    +D   W+  P G F+ KS + L
Sbjct: 497  VQVCDFFMNNSWNVEKLKTVLQQEVVDEIAKIPIDTMSKDEAYWTPTPNGDFSTKSAWQL 556

Query: 318  ESNRNLPRPIRVSTGYWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQ 497
               R +  P  V    W+  +    + F W  L   +P +  +  +G+Q+   C  C + 
Sbjct: 557  IRKRKVVNP--VFNFIWHKTVPLTTSFFLWRLLHDWIPVELKMKSKGLQLASRCRCC-KS 613

Query: 498  EESLTHLFFFCSFLNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLP 677
            EES+ H+ +       +W  F K ++   +    I  I  AW           I  +   
Sbjct: 614  EESIMHVMWDNPVAMQVWNYFAKLFQICIINPCTINQIIGAWFHSGDYCKPGHIRTLVPL 673

Query: 678  HLCWSIWLERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKCQVS-DSETSIIKEWHIP 854
             + W +W+ERN+         P+ + +R  + I   ++  +  +     +  I +EW I 
Sbjct: 674  FILWFLWVERNDAKHRNLGMYPNRVVWRVLKLIQQLSLGQQLLKWQWKGDKQIAQEWGII 733

Query: 855  YSPQEDSFVEV-RWFPPTGNGIKFNFDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKASGN 1031
               +  +  +V  W  PT    K N DGS +  +    GGI RD  G  ++GFS      
Sbjct: 734  LQAESLAPPKVFSWHKPTTGEFKLNVDGSAKHSHNAAGGGILRDHAGVMVFGFSENLGIQ 793

Query: 1032 SALIAEAKSLHFGSRLIRRF-MAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLA 1208
            ++L AE  +L+ G  L R + +  + IE D++S+I++ +     P  +   +  + + L+
Sbjct: 794  NSLQAELLALYRGLILCRDYNIRRLWIEMDAISVIRLLQGNHRGPHAIRYLMVSLRQLLS 853

Query: 1209 GFDTRFQHTFREGNKVADLLANHGYEEMDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
             F  RF H FREGN+ AD LAN G+E  ++Q F  A   ++  L  D+    ++R
Sbjct: 854  HFSFRFSHIFREGNQAADFLANRGHEHQNLQVFTVAQGKLRGMLRLDQTSFPYVR 908


>gb|EOY25451.1| Uncharacterized protein TCM_016759 [Theobroma cacao]
          Length = 879

 Score =  134 bits (338), Expect = 1e-28
 Identities = 105/393 (26%), Positives = 177/393 (45%), Gaps = 11/393 (2%)
 Frame = +3

Query: 228  LPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYWNIDLIPKINSFWW 407
            L P    ++D   W+    G+F   S +  E+ R       + +  W+  +   I+ F W
Sbjct: 496  LIPFNRTQQDVAYWTLTSNGEFATWSAW--ETIRQRKSSNALCSFIWHRSIPLSISFFLW 553

Query: 408  LCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTNWV 587
              L   +P +  +  +GIQ+   C +C   EESL H+ +  S    +W  F K+++   +
Sbjct: 554  RALNNWIPVELRMKEKGIQLASKC-VCCNSEESLMHVLWGNSVAKQVWAFFGKFFQIYVL 612

Query: 588  FSGDIISIWNAWKSPWSSDGLKR--IWKISLPHLCWSIWLERNNRVFGRPHSNPSTIFFR 761
                +  I  AW   +S D +K+  I  +    +CW +WLERN+        NP  + +R
Sbjct: 613  NPQHVSQILWAWF--FSGDYVKKGHIRSLLPIFICWFLWLERNDAKHRHTRLNPDRVVWR 670

Query: 762  ARRFI---MDNAMC----WKKCQVSDSETSIIKEW-HIPYSPQEDSFVEVRWFPPTGNGI 917
              + +   +D ++     WK       +T I   W H   S        + W  P     
Sbjct: 671  IMKLLRQLLDGSLLHQWQWK------GDTDIASMWGHTFQSKHRAPPQIIYWRKPFTGEY 724

Query: 918  KFNFDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFGSRLIR-RFM 1094
            K N DGS R G++   GGI RD  G+ ++GFS      ++L AE ++L  G  L + R +
Sbjct: 725  KLNVDGSSRNGHLAASGGILRDHTGKLIFGFSENIGLCNSLQAELRALLRGLLLCKERHI 784

Query: 1095 APITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREGNKVADLLAN 1274
              + IE D+L++I++ +   +    +   LE I + L+    R  H FREGN+ AD LAN
Sbjct: 785  ENLWIEMDALAVIQLIQHSQKGSHDIRYLLESIRKCLSCISYRISHIFREGNQAADYLAN 844

Query: 1275 HGYEEMDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
             G+   ++     A   +   L  D++   ++R
Sbjct: 845  EGHSHQNLCVITEAQGELHGMLKLDRLNLPYVR 877


>ref|XP_002303192.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  133 bits (335), Expect = 2e-28
 Identities = 115/400 (28%), Positives = 182/400 (45%), Gaps = 23/400 (5%)
 Frame = +3

Query: 3    KMIKFWTDKWLKMGTLADKFPR--HFSSVSARVPNTVRGPNIPELLDLELSVSEGYA--- 167
            K   FW D WL    LAD+FP   H S+      + +   +    +D ++ + +G+    
Sbjct: 284  KRTVFWHDTWLANYCLADRFPTLYHLSNDKDASIDKMGMWDGDASID-KMGMWDGFEWTW 342

Query: 168  --NLSRN-RDQSWKEIKQLVLSELPPLLDNKRDS-LIWSAHPQGKFTVKSCYLLESNRNL 335
              + +R  R Q+   ++QL +      LDN+ D  LIW  +  G+F+VKS   L S  + 
Sbjct: 343  FFSWTRPLRGQNIGLLEQLYVVLSTMHLDNEADDRLIWKDNKSGRFSVKSLCGLLSPTHY 402

Query: 336  PRPIRVSTGYWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGI--QVDPLCPLCGQQEESL 509
            P       G W   + PK+  F W+ +   L T+ +L+RRG+    +  CP+C  +EES+
Sbjct: 403  PNNGFSFAGIWKGVVPPKVEIFCWMVIINILNTRGVLVRRGVLDSSNSNCPICLVEEESV 462

Query: 510  THLFFFCSFLNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCW 689
             HL   C     IW    K+W  +W    ++  +++ W         K+ W +    + W
Sbjct: 463  DHLILLCYKHLTIWSKIIKWWGLSWCCPKNLSGLFSQWTFMVHGKFQKKAWLMLFFSVAW 522

Query: 690  SIWLERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKCQVSD---SETSIIK--EWHIP 854
            S+WL RN+ +F +   N  ++FF     I+     W K    D   S + +++  E  I 
Sbjct: 523  SLWLLRNDLIFQQKSPNYDSVFF----LIITRLCLWLKAFHPDFPYSPSDLLRSVEGLIR 578

Query: 855  YSPQEDSFVEVRWFPPTGNGIKFNFDGSYRG-GNVVGCGGIFRDSEGRFLYGFSFKASGN 1031
            +S  + +   V W PPT    K+N DGS  G   + G GG+ R+  G  L  FS      
Sbjct: 579  WSNVQITRTGVIWSPPTIGSFKWNVDGSSLGKPGLSGIGGVLRNHHGHLLGIFSLPVGIL 638

Query: 1032 SALIAE------AKSLHFGSRLIRRFMAPITIEGDSLSII 1133
             + IAE      A  L   +RL+      ITIE DS ++I
Sbjct: 639  DSNIAELRAVVKAVELSASNRLLHH--KHITIESDSANVI 676


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  131 bits (330), Expect = 8e-28
 Identities = 122/447 (27%), Positives = 195/447 (43%), Gaps = 17/447 (3%)
 Frame = +3

Query: 9    IKFWTDKWLKMGTLADKFPRHFSSVSARVP---NTVRGPNIPELLDLELSVSEGYANLSR 179
            I FWTD W+    L  K+     S + +V    N + G +IP+LL L             
Sbjct: 948  ISFWTDNWIFQYPLNSKYVPTVGSENIKVAECFNGLGGWDIPKLLTLVPP---------- 997

Query: 180  NRDQSWKEIKQLVLSELPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVST 359
                    I + + S   P   +++D L+W   P G+++VKS   L    N     +V  
Sbjct: 998  -------NIVKAISSVFIPS-SSQQDRLLWGLTPTGQYSVKSGASLIREVNGGTIEKVEF 1049

Query: 360  GY-WNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSF 536
             + W I   PKI +F W      L T   L R  I V   C  C    E++ HL F C F
Sbjct: 1050 NWIWGIHAPPKIKNFLWKACNDGLATTSRLERSHIFVPQNCCFCDCPSETICHLCFQCPF 1109

Query: 537  LNDIW-----KLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCWSIWL 701
              DI+     K  W  +  +W  +  + S  +  ++   +  L+ + K+S+  + W +W 
Sbjct: 1110 TLDIYSHLEDKFQWPAY-PSWFSTLQLSSFRSVLEACHINLTLEYLTKLSI--VWWHVWY 1166

Query: 702  ERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKC--QVSDSETSIIKEWHIPYSPQEDS 875
             RN  +F    +N ST F +A   I      W+K   ++    T + K+  +P      S
Sbjct: 1167 FRNKLIF----NNESTSFSQASFIIHSFMGKWEKANLEIPSFNTPLPKDCKLPVR----S 1218

Query: 876  FVEVRWFPPTGNGIKFNFDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKASG--NSALIAE 1049
               + W PP  + +K NFDGS         G + R+S G  L   + KA G   S L+AE
Sbjct: 1219 GKNLIWSPPNEDVLKVNFDGSKLDNGQAAYGFVIRNSNGEVLMARA-KALGVYPSILMAE 1277

Query: 1050 AKSLHFGSR---LIRRFMAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGF-D 1217
            A  L  G +    ++ +   I  EGD++++I         PW ++N +      L  F +
Sbjct: 1278 AMGLLEGIKGAISLQNWSRKIIFEGDNIAVINAMSPSATGPWTIANIILDAGALLGHFQE 1337

Query: 1218 TRFQHTFREGNKVADLLANHGYEEMDI 1298
             +FQH +RE N++AD +A+ G+   ++
Sbjct: 1338 VKFQHCYREANRLADFMAHKGHSHPEV 1364


>gb|EOY19200.1| Retrotransposon, unclassified-like protein [Theobroma cacao]
          Length = 1368

 Score =  130 bits (328), Expect = 1e-27
 Identities = 113/451 (25%), Positives = 190/451 (42%), Gaps = 15/451 (3%)
 Frame = +3

Query: 9    IKFWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYANLSRNRD 188
            I FW D W+    L + FP    S+                    + V+  + + + + D
Sbjct: 897  IFFWHDAWMGDEPLVNSFPSFSQSM--------------------MKVNYFFNDDAWDVD 936

Query: 189  QSWKEIKQLVLSELP--PLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTG 362
            +    I   ++ E+   P+   K D   W+    G F++KS + L   R       V   
Sbjct: 937  KLKTFIPNAIVEEILKIPISREKEDIAYWALTANGDFSIKSAWELLRQRKQVN--LVGQL 994

Query: 363  YWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLN 542
             W+  +   ++ F W  L   LP +  +  +GIQ+   C LC + EESL H+ +      
Sbjct: 995  IWHKSIPLTVSFFLWRTLHNWLPVEVRMKAKGIQLASKC-LCCKSEESLLHVLWESPVAQ 1053

Query: 543  DIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLK--RIWKISLPHLCWSIWLERNNR 716
             +W  F K+++       +I+ I N+W   +S D  K   I  + L  + W +W+ERN+ 
Sbjct: 1054 QVWNYFSKFFQIYVHNPQNILQILNSWY--YSGDFTKPGHIRTLILLFIFWFVWVERNDA 1111

Query: 717  VFGRPHSNPSTIFFRA----RRFIMDNAMC---WKKCQVSDSETSIIKEWHIPYSPQEDS 875
                    P  I +R     R+      +C   WK       +  I   W   ++ +  +
Sbjct: 1112 KHRDLGMYPDRIIWRIMKILRKLFQGGLLCKWQWK------GDLDIAIHWGFNFAQERQA 1165

Query: 876  FVEV-RWFPPTGNGIKFNFDGSYRGG--NVVGCGGIFRDSEGRFLYGFSFKASGNSALIA 1046
              ++  W  P    +K N DGS +    N  G GG+ RD  G  ++GFS      ++L A
Sbjct: 1166 RPKIINWIKPLIGELKLNVDGSSKDEFQNAAG-GGVLRDHTGNLIFGFSENFGYQNSLQA 1224

Query: 1047 EAKSLHFGSRLIRRF-MAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTR 1223
            E  +LH G  L   + ++ + IE D+  +I+M +   +  + +   LE I + L     R
Sbjct: 1225 ELLALHRGLCLCMEYNVSRVWIEVDAQVVIQMIQNHHKGSYKIQYLLESIRKCLQVISVR 1284

Query: 1224 FQHTFREGNKVADLLANHGYEEMDIQFFDNA 1316
              H  REGN+ AD L+ HG+   ++  F  A
Sbjct: 1285 ISHIHREGNQAADFLSKHGHTHQNLHVFTEA 1315


>emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score =  130 bits (327), Expect = 2e-27
 Identities = 119/449 (26%), Positives = 185/449 (41%), Gaps = 22/449 (4%)
 Frame = +3

Query: 12   KFWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYANLSRNRDQ 191
            +FW D WL   +L  +FPR FS ++     +V      E  +   S S  +  + R +D 
Sbjct: 937  RFWLDSWLSSSSLKSEFPRLFS-ITMNPNASVESLGFWEGYNWVWSFS--WKRILRPQDA 993

Query: 192  SWKEIKQLVLSELPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYWN 371
              K     +L ++ P     +D LIW+    G F+ KS          P       G W 
Sbjct: 994  IEKARLDNLLLQVCPARQ-AQDHLIWAFSKSGSFSTKSVSRQLVKLQHPHYQDAIRGVW- 1051

Query: 372  IDLIP-KINSFWWLCLKKCLPTKDLLLRRGIQVDP--LCPLCGQQEESLTHLFFFCSFLN 542
            + L+P +I  F WL L   + T+D L   GI      +CPLC  + E+  HL   C   +
Sbjct: 1052 VGLVPHRIELFVWLALLGKINTRDKLASLGIIHGDCNICPLCMTEPETAEHLLLHCPVAS 1111

Query: 543  DIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLCWSIWLERNNRVF 722
             IW  +   W+  W F   +   +  W  P +S   K++W      + W++W ERN R+F
Sbjct: 1112 QIWSWWIGLWRIKWAFPLSLREAFTQWFWPKNSPFFKKVWSAVFFIIVWTLWKERNQRIF 1171

Query: 723  GRPHSNPSTIFFRARRFIMDNAMC---WKKCQVSDSETSIIK-----EWH-IPYSPQEDS 875
                +NPST+       +M        WK  +   + T I++     +W  I    + D 
Sbjct: 1172 S---NNPSTVKVLKDMVLMRLGWWISGWKD-EFPYNPTDIMRNPSCLQWSGIKDDSKADL 1227

Query: 876  FVE--VRWFPPTGNGIKFNFDGSYRGGNV-VGCGGIFRDSEGRFLYGFS----FKASGNS 1034
             ++  V W PP    IK+N D S    +     GG+ R+  G F+  FS    F     +
Sbjct: 1228 VIKSSVSWCPPPSQIIKWNVDASVHTCSARSAIGGVLRNHSGNFMCLFSSPIPFMEINCA 1287

Query: 1035 ALIAEAKSLHFGSRLIRRFMAPITIEGDSLSIIKMAKKEWEHPWYLS---NFLEGIWENL 1205
             ++A  +++   S       A I +E DS + +     +   PW L+   NF+       
Sbjct: 1288 EILAIHRAVKISSAKEELKGAKIILESDSKNAVLWCNSDSGGPWNLNFQLNFIRN--TRK 1345

Query: 1206 AGFDTRFQHTFREGNKVADLLANHGYEEM 1292
             G D    H  R  N VAD +A  G   +
Sbjct: 1346 GGLDISIVHRSRSANVVADSMAKQGLHRL 1374


>gb|EOY17514.1| Uncharacterized protein TCM_042330 [Theobroma cacao]
          Length = 2249

 Score =  130 bits (326), Expect = 2e-27
 Identities = 108/417 (25%), Positives = 187/417 (44%), Gaps = 7/417 (1%)
 Frame = +3

Query: 144  LSVSEGYANLSRNRDQSWKEIKQLVLSELP--PLLDNKRDSLIWSAHPQGKFTVKSCYLL 317
            + V + + N S + ++    ++Q V+ E+   P+    +D   W+  P G+F+ KS + L
Sbjct: 1836 VQVCDFFMNNSWDIEKLKTVLQQEVVDEIAKIPIDAMSKDEAYWAPTPNGEFSTKSAWQL 1895

Query: 318  ESNRNLPRPIRVSTGYWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQ 497
               R +  P  V    W+  +   I+ F W  L   +P +  +  +G Q+   C  C + 
Sbjct: 1896 IRKREVVNP--VFNFIWHKTVPLTISFFLWRLLHDWIPVELKMKSKGFQLASRCRCC-KS 1952

Query: 498  EESLTHLFFFCSFLNDIWKLFWKYWKTNWVFSGDIISIWNAWKSPWSSDGLK--RIWKIS 671
            EES+ H+ +       +W  F K+++   +    I  I  AW   +S D  K   I  + 
Sbjct: 1953 EESIMHVMWDNPVATQVWNYFSKFFQILVINPCTINQILGAWF--YSGDYCKPGHIRTLV 2010

Query: 672  LPHLCWSIWLERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKCQVS-DSETSIIKEWH 848
                 W +W+ERN+         P+ I +R  + I   ++  +  +     +  I +EW 
Sbjct: 2011 PIFTLWFLWVERNDAKHRNLGMYPNRIVWRILKLIQQLSLGQQLLKWQWKGDKQIAQEWG 2070

Query: 849  IPYSPQEDSFVEV-RWFPPTGNGIKFNFDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKAS 1025
            I +  +     +V  W  P+    K N DGS +       GG+ RD  G  ++GFS    
Sbjct: 2071 ITFQAESLPPPKVFPWHKPSIGEFKLNVDGSAKLSQNAAGGGVLRDHAGVMVFGFSENLG 2130

Query: 1026 GNSALIAEAKSLHFGSRLIRRF-MAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWEN 1202
              ++L AE  +L+ G  L R + +  + IE D+ S+I++ +     P  +   L  I + 
Sbjct: 2131 IQNSLQAELLALYRGLILCRDYNIRRLWIEMDAASVIRLLQGNQRGPHAIRYLLVSIRQL 2190

Query: 1203 LAGFDTRFQHTFREGNKVADLLANHGYEEMDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
            L+ F  R  H FREGN+ AD LAN G+E   +Q    A   ++  L  D+    ++R
Sbjct: 2191 LSHFSFRLSHIFREGNQAADFLANRGHEHQSLQVVTVAQGKLRGMLRLDQTSLPYVR 2247


>ref|XP_004309472.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 364

 Score =  130 bits (326), Expect = 2e-27
 Identities = 106/368 (28%), Positives = 162/368 (44%), Gaps = 10/368 (2%)
 Frame = +3

Query: 255  DSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTG--YWNIDLIPKINSFWWLCLKKCL 428
            D LIW     G+ + K  +        PR   +  G   W+  +IP+I+   W  L+  +
Sbjct: 3    DKLIWVPLSSGELSAKEAFQFLR----PRLPSLDWGKLIWSKFIIPRISLHSWKVLRGRV 58

Query: 429  PTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTNWVFSGDIIS 608
             ++DLL RRGI +   C LCG+  ESL H+F  CSF   +W      ++   +    +  
Sbjct: 59   LSEDLLQRRGIALASRCVLCGRDGESLPHIFLTCSFAASLWNNRAGLFELGCLPQNLVDL 118

Query: 609  IWNAWKSPWSSDGLKRIWKISLPHLCWSIWLERNNRVFGRPHSNPSTIFFRARRFIMDNA 788
            ++  +     S  LK IW I      W IW  RN       H N + +    R+ IM + 
Sbjct: 119  LY--YGGVGRSHQLKEIWLICYTTTLWFIWKARNK----MRHDNCTIVVDAVRQLIMGHV 172

Query: 789  MCWKKCQV-----SDSETSIIKEWHIPYSP-QEDSFVEVRWFPPTGNGIKFNFDGSY-RG 947
                K  +     S +E  ++K++ +   P +     EV W PP    IK N DG++ + 
Sbjct: 173  KTASKLALGCMSNSLTELRVLKKFGLLCRPHRAPRITEVNWHPPLFGWIKVNTDGAWQKT 232

Query: 948  GNVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFGSRLI-RRFMAPITIEGDSL 1124
                G GGIFRD  G FL  F+      +++ AE  ++     L   R    I +E DS+
Sbjct: 233  TGKSGYGGIFRDFHGSFLGAFASNLEILNSVDAEVMAVIQAIELAWVRDWEHIWLEVDSI 292

Query: 1125 SIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREGNKVADLLANHGYEEMDIQF 1304
             ++   +     PW L          ++  + R  H FREGN+VAD LAN G     + +
Sbjct: 293  IVLNFLQDPHLVPWRLRVGWGNFLHRISQMNFRSSHIFREGNQVADALANMGLSMSALSW 352

Query: 1305 FDNAPVFI 1328
            +D  P FI
Sbjct: 353  WDEPPHFI 360


>gb|EOY02238.1| Uncharacterized protein TCM_016762 [Theobroma cacao]
          Length = 2214

 Score =  129 bits (324), Expect = 4e-27
 Identities = 100/388 (25%), Positives = 177/388 (45%), Gaps = 6/388 (1%)
 Frame = +3

Query: 228  LPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYWNIDLIPKINSFWW 407
            L P    ++D   W+    G+F+ KS +  E+ R       + +  W+  +   I+ F W
Sbjct: 1832 LIPFDRTQQDVAYWTLTSNGEFSTKSAW--ETIRQQQSHNTLGSLIWHRSIPLSISFFIW 1889

Query: 408  LCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTNWV 587
              L   +P +  +  +GI +   C +C   EESL H+ +  S    +W  F K+++   +
Sbjct: 1890 RALNNWIPVELRMKGKGIHLASKC-VCCNSEESLMHVLWGNSVAKQVWAFFAKFFQIYVL 1948

Query: 588  FSGDIISIWNAWKSPWSSDGLKR--IWKISLPHLCWSIWLERNNRVFGRPHSNPSTIFFR 761
                +  I  AW   +S D +KR  I  +    +CW +WLERN+  +     N   I +R
Sbjct: 1949 NPKHVSHILWAWF--YSGDYVKRGHIRTLLPIFICWFLWLERNDAKYRHSGLNTDRIVWR 2006

Query: 762  ARRFIM---DNAMCWKKCQVSDSETSIIKEWHIPYSPQEDSFVEVRWFPPTGNGIKFNFD 932
              + +    D ++  +     D++ + + +++     +    + V W  P+    K N D
Sbjct: 2007 IMKLLRQLKDGSLLQQWQWKGDTDIAAMWQYNFQLKLRAPPQI-VYWRKPSTGEYKLNVD 2065

Query: 933  GSYRGGNVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFGSRLIR-RFMAPITI 1109
            GS R G     GG+ RD  G+ ++GFS      ++L AE ++L  G  L + R +  + I
Sbjct: 2066 GSSRHGQHAASGGVLRDHTGKLIFGFSENIGTCNSLQAELRALLRGLLLCKERHIEKLWI 2125

Query: 1110 EGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREGNKVADLLANHGYEE 1289
            E D+L+ I++     +    +   LE I + L     R  H  REGN+VAD L+N G+  
Sbjct: 2126 EMDALAAIQLLPHSQKGSHDIRYLLESIRKCLNSISYRISHIHREGNQVADFLSNEGHNH 2185

Query: 1290 MDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
             ++  F  A   +   L  D++   ++R
Sbjct: 2186 QNLHVFTEAQGKLHGMLKLDRLNLPYVR 2213


>gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]
          Length = 2215

 Score =  127 bits (318), Expect = 2e-26
 Identities = 116/462 (25%), Positives = 194/462 (41%), Gaps = 9/462 (1%)
 Frame = +3

Query: 15   FWTDKWLKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYANLSRNRDQS 194
            FW D W+    L ++     SS++                     VS+ + N S N ++ 
Sbjct: 1778 FWHDCWMGEEPLVNRNQAFASSMA--------------------QVSDFFLNNSWNVEKL 1817

Query: 195  WKEIKQLVLSELP--PLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYW 368
               ++Q V+ E+   P+  +  D   W+  P G F+ KS + L  NR +  P  V    W
Sbjct: 1818 KTVLQQEVVEEIVKIPIDTSSNDKAYWTTTPNGDFSTKSAWQLIRNRKVENP--VFNFIW 1875

Query: 369  NIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDI 548
            +  +    + F W  L   +P +  +  +G Q+   C  C + EESL H+ +     N +
Sbjct: 1876 HKSVPLTTSFFLWRLLHDWIPVELKMKTKGFQLASRCRCC-KSEESLMHVMWKNPVANQV 1934

Query: 549  WKLFWKYWKTNWVFSGDIISIWNAW--KSPWSSDGLKRIWKISLPHLCWSIWLERNNRVF 722
            W  F K ++   +    I  I  AW     +S  G   I  +      W +W+ERN+   
Sbjct: 1935 WSYFAKVFQIQIINPCTINQIICAWFYSGDYSKPG--HIRTLVPLFTLWFLWVERNDAKH 1992

Query: 723  GRPHSNPSTIFFRARRFIMDNAMCWKKCQVSD--SETSIIKEWHIPYSPQEDSFVEVR-W 893
                  P+ + ++  + ++      K+ Q      +  I +EW I       S  ++  W
Sbjct: 1993 RNLGMYPNRVVWKILK-LLHQLFQGKQLQKWQWQGDKQIAQEWGIILKADAPSPPKLLFW 2051

Query: 894  FPPTGNGIKFNFDGSYRGG-NVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFG 1070
              P+   +K N DGS +        GG+ RD  G  ++GFS       +L AE  +LH G
Sbjct: 2052 LKPSIGELKLNVDGSCKHNPQSAAGGGLLRDHTGSMIFGFSENFGPQDSLQAELMALHRG 2111

Query: 1071 SRL-IRRFMAPITIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREG 1247
              L I   ++ + IE D+   ++M K+  +        L  I   L+G   R  H FREG
Sbjct: 2112 LLLCIEHNISRLWIEMDAKVAVQMIKEGHQGSSRTRYLLASIHRCLSGISFRISHIFREG 2171

Query: 1248 NKVADLLANHGYEEMDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
            N+ AD L+N G+   ++Q    A   ++  L  +KI   ++R
Sbjct: 2172 NQAADHLSNQGHTHQNLQVISQAEGQLRGILRLEKINLAYVR 2213


>ref|XP_004299997.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 448

 Score =  125 bits (315), Expect = 5e-26
 Identities = 121/476 (25%), Positives = 198/476 (41%), Gaps = 18/476 (3%)
 Frame = +3

Query: 3    KMIKFWTDKW-LKMGTLADKFPRHFSSVSARVPNTVRGPNIPELLDLELSVSEGYANLSR 179
            KM+KFW+D W L +  L    P    ++S+ V               +     G+ N+  
Sbjct: 13   KMVKFWSDTWVLSVPLLQFALPHAVINLSSTV--------------CDFWCDTGW-NIEM 57

Query: 180  NRDQSWKEIKQLVLSELPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVST 359
              D    E+   ++S      D+  D LIW A   G F+VKS Y+   +   P+      
Sbjct: 58   LSDVVPPEVVNQIISFPTGFEDSGNDQLIWKATSNGVFSVKSAYISSFDMAEPQHHYWKV 117

Query: 360  GYWNIDLIPKINSFWWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESL-----THL-- 518
              W ++ +PK+ +F+W  L K + T    +RR      +CP+C   +ESL     T L  
Sbjct: 118  -VWKLNCLPKLKTFFWTVLHKKILTNVQRVRRRFTTSAVCPICNSADESLHSETVTGLKR 176

Query: 519  --FFFCSFLNDIWKLFWK--YWKTNWVFSGDIISIWNAWKSPWSSDGLKRIWKISLPHLC 686
                F   L  + +L W    W +  +F    +            +G+K  W      +C
Sbjct: 177  FGNLFAPLLIFLTRLSWAGIIWISAQLFCQSKV-----------KNGIK--WCNLFVFVC 223

Query: 687  WSIWLERNNRVFGRPHSNPSTIFFRARRFIMDNAMCWKKCQVSDSETSIIKEWHIPYSPQ 866
            W +W  RN  VF      P         ++ +    W   Q + S +++   +++ Y   
Sbjct: 224  WFLWKWRNKIVFDSSFVMPGDPALVIWNYVEE----WTSAQSNPSSSNM---FNVTY--- 273

Query: 867  EDSFVEVRWFPPTGNGIKFNFDGSYRGGN-VVGCGGIFRDSEGRFLYGFSFKASGNSALI 1043
                  + W  P  N +K N DG+    +  +G GG+ RD  G +++G          L 
Sbjct: 274  ------LSWLRPPANCLKLNIDGTRSSSSGKIGAGGVLRDHAGNWIFGCQINLGVGEVLY 327

Query: 1044 AEAKSLHFGSRLIRRF-MAPITIEGDSLSIIK-MAKKEWE-HPWYLSNFLEGIWENLAGF 1214
            AEA  L FG +L+ +F  + + +E DS  +++ M K+ +E HP  L + L      ++  
Sbjct: 328  AEAWGLLFGLKLVAKFYCSDLEVESDSAVLVQLMQKRSFELHP--LGSLLSACSSFMSKM 385

Query: 1215 -DTRFQHTFREGNKVADLLANHGY-EEMDIQFFDNAPVFIKPALFDDKIGTKFLRR 1376
             + +  H FRE N VAD LA      ++ +  F++ PV    A  DD  G    RR
Sbjct: 386  PNVKLSHIFRECNMVADSLAKCSITHDLGLVTFNSPPVHAVQAYLDDLDGVVRARR 441


>gb|EOY34747.1| Uncharacterized protein TCM_042327 [Theobroma cacao]
          Length = 1014

 Score =  125 bits (313), Expect = 8e-26
 Identities = 97/386 (25%), Positives = 173/386 (44%), Gaps = 6/386 (1%)
 Frame = +3

Query: 234  PLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYWNIDLIPKINSFWWLC 413
            P   ++ D   W+    G+F+  S +  E+ R    P  + +  W+  +   I+ F W  
Sbjct: 633  PFDRSQDDIAYWALTSDGEFSTWSAW--EAVRQRQSPNTLCSFIWHKSIPLTISFFLWRV 690

Query: 414  LKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTNWVFS 593
            L   +P +  L  +G  +   C +C   EESL H+ +       +W  F  +++ N    
Sbjct: 691  LNNWIPVELRLKEKGFHLASKC-VCCNSEESLIHVLWDNPVAKQVWNFFADFFQINISNP 749

Query: 594  GDIISIWNAWKSPWSSDGLKR--IWKISLPHLCWSIWLERNN---RVFGRPHSNPSTIFF 758
              +  I  AW   +S D +++  I  +    +CW +WLERN+   R  G           
Sbjct: 750  QHVSQIIWAWY--YSGDFVRKGHIRTLIPLFICWFLWLERNDAKHRHLGMYSDRVVWKIM 807

Query: 759  RARRFIMDNAMCWKKCQVSDSETSIIKEWHIPYSPQEDSFVEVRWFPPTGNGIKFNFDGS 938
            +  R + D ++  K     D++ + +  + +P   +E   + + W  P     K N DGS
Sbjct: 808  KVLRQLQDGSLLKKWQWKGDTDIAAMWGFTLPLKIRESPQI-IHWVKPVTGEYKLNVDGS 866

Query: 939  YRGGNVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFGSRLIR-RFMAPITIEG 1115
             R       GG+ RD  G  ++GFS     +++L AE ++L  G  L + R +  + IE 
Sbjct: 867  SRHNQSAATGGLLRDHTGTLVFGFSENIGPSNSLQAELRALLRGLLLCKDRNIEKLWIEM 926

Query: 1116 DSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREGNKVADLLANHGYEEMD 1295
            D+L +I+M ++  +    +   L  I + L+ F  R  H FREGN+ AD L+N G+   +
Sbjct: 927  DALVVIQMIQQSKKGSHDIRYLLASIRKCLSFFSFRISHIFREGNQAADFLSNKGHTHQN 986

Query: 1296 IQFFDNAPVFIKPALFDDKIGTKFLR 1373
            +Q    A   +   L  D++   +++
Sbjct: 987  LQVISEAQGKLHGMLKLDRLNLPYVK 1012


>gb|EOY02234.1| Uncharacterized protein TCM_011921 [Theobroma cacao]
          Length = 926

 Score =  124 bits (312), Expect = 1e-25
 Identities = 100/390 (25%), Positives = 181/390 (46%), Gaps = 8/390 (2%)
 Frame = +3

Query: 228  LPPLLDNKRDSLIWSAHPQGKFTVKSCYLLESNRNLPRPIRVSTGYWNIDLIPKINSFWW 407
            L P    ++D   W     G+F+ +S +  E+ R       + +  W+  +   I+ F W
Sbjct: 544  LIPFDRTQQDVAYWILTSNGEFSTRSAW--ETIRKRQPHNTLGSLIWHRSIPLSISFFIW 601

Query: 408  LCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTNWV 587
              L   +P +  +  +GI +   C +C   EESL H+ +  S    +W  F  +++  ++
Sbjct: 602  RALNNWIPVELRMKEKGIHLASKC-VCCNSEESLMHVLWGNSVAKQVWAFFANFFQI-YI 659

Query: 588  FSGDIIS--IWNAWKSPWSSDGLKR--IWKISLPHLCWSIWLERNN---RVFGRPHSNPS 746
            F+   +S  +W AW   +S D +KR  I  +    +CW +WLERN+   R  G       
Sbjct: 660  FNPQHVSHILW-AWF--YSGDYVKRGHIRTLLPIFICWFLWLERNDAKHRYSGLYTDRVV 716

Query: 747  TIFFRARRFIMDNAMCWKKCQVSDSETSIIKEWHIPYSPQEDSFVEVRWFPPTGNGIKFN 926
                +  R + D ++  +     D++ + + ++++    +    + V W  P+    K N
Sbjct: 717  WRIMKLLRQLHDGSLLQQWQWKGDTDIAAMWKYNLQLKLRAPPQI-VYWRKPSTGEYKLN 775

Query: 927  FDGSYRGGNVVGCGGIFRDSEGRFLYGFSFKASGNSALIAEAKSLHFGSRLIR-RFMAPI 1103
             DGS R G     GG+ RD  G+ ++GFS      ++L AE ++L  G  L + R +  +
Sbjct: 776  VDGSSRHGQHAASGGVLRDHTGKLIFGFSENIGNCNSLQAELRALLRGLLLCKERHIEQL 835

Query: 1104 TIEGDSLSIIKMAKKEWEHPWYLSNFLEGIWENLAGFDTRFQHTFREGNKVADLLANHGY 1283
             IE D+L++I++     +    +   LE I + L     R  H  REGN+VAD L+N G+
Sbjct: 836  WIEMDALAVIQLIPHSQKGSHDIRYLLESIRKCLNSISYRISHILREGNQVADFLSNEGH 895

Query: 1284 EEMDIQFFDNAPVFIKPALFDDKIGTKFLR 1373
               +++ F  A   +   L  D++   ++R
Sbjct: 896  NHQNLRVFTEAQGKLHGMLKLDRLNLPYVR 925


>ref|NP_187562.1| RNase H domain-containing protein [Arabidopsis thaliana]
            gi|6682231|gb|AAF23283.1|AC016661_8 putative non-LTR
            reverse transcriptase [Arabidopsis thaliana]
            gi|332641254|gb|AEE74775.1| RNase H domain-containing
            protein [Arabidopsis thaliana]
          Length = 484

 Score =  124 bits (311), Expect = 1e-25
 Identities = 107/364 (29%), Positives = 163/364 (44%), Gaps = 20/364 (5%)
 Frame = +3

Query: 249  KRDSLIWSAHPQGKFTVKSCYLL---ESNRNLPR------PIRVSTGYWNIDLIPKINSF 401
            K D +IW+ +  G++TV+S Y L   + + N+P        I + T  WN+ ++PK+  F
Sbjct: 115  KPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHF 174

Query: 402  WWLCLKKCLPTKDLLLRRGIQVDPLCPLCGQQEESLTHLFFFCSFLNDIWKLFWKYWKTN 581
             W  L + L T + L  RG+++DP CP C ++ ES+ H  F C F    W+L       N
Sbjct: 175  LWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRN 234

Query: 582  WVFSGD----IISIWNAWKSPWSSD--GLKRIWKISLPHLCWSIWLERNNRVFGRPHSNP 743
             + S D    I +I N  +    SD   L  +W      L W IW  RNN VF +   +P
Sbjct: 235  QLMSNDFEENISNILNFVQDTTMSDFHKLLPVW------LIWRIWKARNNVVFNKFRESP 288

Query: 744  STIFFRARRFIMDNAMCWKKCQVSDSETSIIKEWHIPYSPQEDSFVEVRWFPPTGNGIKF 923
            S     A+    D    W     S  +T        P   ++ +  ++ W  P    +K 
Sbjct: 289  SKTVLSAKAETHD----WLNATQSHKKT--------PSPTRQIAENKIEWRNPPATYVKC 336

Query: 924  NFDGSYRGGNVVGCGG-IFRDSEGRFLYGFSFK-ASGNSALIAEAKSLHFG-SRLIRRFM 1094
            NFD  +    +   GG I R+  G  +   S K A  ++ L AE K+L     +   R  
Sbjct: 337  NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGY 396

Query: 1095 APITIEGDSLSIIKMAKKEWEHPWYLSNFLEGI--WENLAGFDTRFQHTFREGNKVADLL 1268
              + +EGD  ++I +      H   L+N LE I  W N      +F    R+GNK+A +L
Sbjct: 397  TQVFMEGDCQTLINLINGISFHS-SLANHLEDISFWANKFA-SIQFGFIRRKGNKLAHVL 454

Query: 1269 ANHG 1280
            A +G
Sbjct: 455  AKYG 458