BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00006887
         (657 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    89   1e-15
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    89   1e-15
ref|XP_002332393.1| predicted protein [Populus trichocarpa]            87   4e-15
ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...    86   1e-14
gb|EXB77631.1| DNA-directed RNA polymerase 2 [Morus notabilis]         85   2e-14
ref|XP_002331994.1| predicted protein [Populus trichocarpa] gi|5...    85   2e-14
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    85   2e-14
emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA p...    85   2e-14
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...    84   3e-14
ref|XP_004491959.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    84   5e-14
ref|XP_004297187.1| PREDICTED: DNA-directed RNA polymerase 1, mi...    83   6e-14
ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/m...    83   6e-14
emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]    83   6e-14
gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3...    83   8e-14
gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2...    83   8e-14
gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1...    83   8e-14
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                   83   8e-14
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu...    82   1e-13
ref|XP_006373437.1| hypothetical protein POPTR_0017s137702g, par...    82   1e-13
ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    82   1e-13

>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           Q++ ETEAW K  EEYKEL  EMC   +APNLPYVK LFLGWF+PL+NAI+  QK  ++K
Sbjct: 147 QIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSK 206

Query: 609 E 611
           +
Sbjct: 207 K 207


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 38/61 (62%), Positives = 47/61 (77%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           Q++ ETEAW K  EEYKEL  EMC   +APNLPYVK LFLGWF+PL+NAI+  QK  ++K
Sbjct: 147 QIKAETEAWEKMVEEYKELEREMCEKKLAPNLPYVKKLFLGWFEPLKNAIEEEQKTQRSK 206

Query: 609 E 611
           +
Sbjct: 207 K 207


>ref|XP_002332393.1| predicted protein [Populus trichocarpa]
          Length = 173

 Score = 87.0 bits (214), Expect = 4e-15
 Identities = 47/112 (41%), Positives = 63/112 (56%)
 Frame = +3

Query: 246 RASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDXXXXXXXXX 425
           RA  ST +E  VS  DEV++          E  + EEH ++  +                
Sbjct: 54  RALSSTDVEDNVSGADEVQE-------LQPEMRKEEEHFRRRRLRANPGIGSRKHRVLRR 106

Query: 426 XQVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAID 581
            QV+ E EAW  AT+EYKEL ++MC  N+APNLPY+KSLFLGWF+P  +AI+
Sbjct: 107 RQVKIEAEAWELATKEYKELLKDMCEHNLAPNLPYMKSLFLGWFEPFTDAIE 158


>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
           gi|548861119|gb|ERN18503.1| hypothetical protein
           AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAI---DALQKNH 599
           QV+ ETEAW +A  EY+EL  EMC   +APNLPY+KSLFLGWF+PLR+AI    ALQ+  
Sbjct: 156 QVKIETEAWERAVREYRELISEMCEQKLAPNLPYMKSLFLGWFEPLRDAIAEEQALQETK 215

Query: 600 QAKEG 614
           +AK G
Sbjct: 216 RAKTG 220


>gb|EXB77631.1| DNA-directed RNA polymerase 2 [Morus notabilis]
          Length = 935

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 9/103 (8%)
 Frame = +3

Query: 312 TRKLATVTESLR---------PEEHIKQHPIHHPDNDDXXXXXXXXXXQVETETEAWRKA 464
           TR+ A+V E++          P E I++  +  P              QV+ ETEAW KA
Sbjct: 66  TRRYASVAEAVSYDDDEFRGSPRETIEEEEVKRPMG---RAYESLRRRQVKLETEAWEKA 122

Query: 465 TEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQK 593
           + EYK++ +EMC   +APNLPY+KSLFLGWF+PLR AI   QK
Sbjct: 123 SNEYKQMVDEMCKKKLAPNLPYMKSLFLGWFEPLREAIKDEQK 165


>ref|XP_002331994.1| predicted protein [Populus trichocarpa]
           gi|566259328|ref|XP_006389224.1| hypothetical protein
           POPTR_0035s00410g [Populus trichocarpa]
           gi|550311935|gb|ERP48138.1| hypothetical protein
           POPTR_0035s00410g [Populus trichocarpa]
          Length = 381

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 47/114 (41%), Positives = 62/114 (54%)
 Frame = +3

Query: 237 NVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDXXXXXX 416
           +V  A  ST +E  VS  DEV++          E  + EEH  +  +             
Sbjct: 32  SVAEALSSTDVEDNVSGADEVQE-------LQPEMRKEEEHFSRRRLRANPGIGSRKHRV 84

Query: 417 XXXXQVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAI 578
               QV+ E EAW  AT+EYKEL ++MC   +APNLPY+KSLFLGWF+P R+AI
Sbjct: 85  LRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFRDAI 138


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 36/61 (59%), Positives = 46/61 (75%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW +  EEY+E+  EMC   +APNLPYVK+LFLGWF+PLR AID  Q+  + K
Sbjct: 150 QVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTK 209

Query: 609 E 611
           +
Sbjct: 210 K 210


>emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
           [Chenopodium album]
          Length = 988

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
 Frame = +3

Query: 252 SVSTTLEPVVSSEDEVKDSFTRKLATVT--ESLRPEEHIKQHPIHHPDNDDXXXXXXXXX 425
           + +   E +V++  E  D     +  +   E ++P+   ++ PI+               
Sbjct: 97  ATAAAAEEIVTASSEEDDEIRELVDEINKLERVKPQSIRRKEPINMVAGMTAGRYNVLRK 156

Query: 426 XQVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQA 605
            Q++ ETEAW +A  EY+EL  +MC   +APNLPY+KSLFLGWF+PL++AI A Q+    
Sbjct: 157 RQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLKDAIKAHQE--AC 214

Query: 606 KEGRRKIGHG 635
           K GR +  +G
Sbjct: 215 KVGRNRPLYG 224


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 47/132 (35%), Positives = 72/132 (54%)
 Frame = +3

Query: 237 NVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDXXXXXX 416
           +V  A  ST +E  VS  DEV++   +         + ++  +Q+               
Sbjct: 132 SVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRTRQNRARGMGQGKYHMLKR 191

Query: 417 XXXXQVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKN 596
               Q++ ETEAW +A +EY+EL  +MC   +APNLPY+KSLFLGWF+PLRNAID  ++ 
Sbjct: 192 R---QIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAID--KEQ 246

Query: 597 HQAKEGRRKIGH 632
              ++G+ K  +
Sbjct: 247 DLCRKGKNKTAY 258


>ref|XP_004491959.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like isoform X3 [Cicer
           arietinum]
          Length = 1053

 Score = 83.6 bits (205), Expect = 5e-14
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 16/192 (8%)
 Frame = +3

Query: 90  RICLHKALGEICLTNLRPFS------APVASAIRVWPLHK-GQTNCNTVVHKDARFNVFR 248
           R  L +  G  C +N  PF       + VA A+      + G  +    V K++ F    
Sbjct: 88  RFQLVENFGGCCCSNNSPFLFDAKGYSSVAEAVSSRDAEEDGNFDGGCRVSKNSSFRFDA 147

Query: 249 ASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHH---------PDNDDX 401
              S+  E V S++ E + +   K+  + + ++ EE  K+  I            +    
Sbjct: 148 KGYSSVAEAVSSTDAEEELAPVDKIQELLDEMKREEMRKKRQIAECKLKNGVNLRNGMAE 207

Query: 402 XXXXXXXXXQVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAID 581
                    QV+TETE W +A +EYKEL  +MC   +APNLPY+KSLFLGWF+PL++AI+
Sbjct: 208 GKYKELRKRQVKTETEVWEEAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLKDAIE 267

Query: 582 ALQKNHQAKEGR 617
             Q+ ++    R
Sbjct: 268 KEQEVYRTGNKR 279


>ref|XP_004297187.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like
           [Fragaria vesca subsp. vesca]
          Length = 997

 Score = 83.2 bits (204), Expect = 6e-14
 Identities = 37/68 (54%), Positives = 48/68 (70%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW  A  EY+EL  +MC   +APNLPY+KSLFLGWF+PLR+AI A  ++   K
Sbjct: 139 QVKLETEAWEDAANEYQELLSDMCQQKLAPNLPYIKSLFLGWFEPLRDAIAAEPESWAGK 198

Query: 609 EGRRKIGH 632
           +G  +  H
Sbjct: 199 KGNCRPSH 206


>ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
           putative [Ricinus communis] gi|223546175|gb|EEF47677.1|
           DNA-directed RNA polymerase 2, chloroplast/mitochondrial
           precursor, putative [Ricinus communis]
          Length = 997

 Score = 83.2 bits (204), Expect = 6e-14
 Identities = 36/69 (52%), Positives = 50/69 (72%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           Q++ ETEAW +A  EY+EL  +MC   +APNLPY+KSLFLGWF+PLR+AI   ++   ++
Sbjct: 156 QIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAI--AKEQELSR 213

Query: 609 EGRRKIGHG 635
           E   K+ HG
Sbjct: 214 EKNNKLSHG 222


>emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
          Length = 1312

 Score = 83.2 bits (204), Expect = 6e-14
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW +  EEY+E+  EMC   +APNLPYVK+LFLGWF+PLR AI+  Q+  + K
Sbjct: 150 QVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIEKEQRAQRTK 209

Query: 609 E 611
           +
Sbjct: 210 K 210


>gb|EOY31498.1| DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao]
          Length = 927

 Score = 82.8 bits (203), Expect = 8e-14
 Identities = 37/68 (54%), Positives = 46/68 (67%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW K  EEY+EL  EMC   +APNLPYVK LFLGWF+P+R AI   QK  + K
Sbjct: 147 QVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGK 206

Query: 609 EGRRKIGH 632
             + +  +
Sbjct: 207 SKKLRAAY 214


>gb|EOY31497.1| DNA/RNA polymerases superfamily protein isoform 2 [Theobroma cacao]
          Length = 857

 Score = 82.8 bits (203), Expect = 8e-14
 Identities = 37/68 (54%), Positives = 46/68 (67%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW K  EEY+EL  EMC   +APNLPYVK LFLGWF+P+R AI   QK  + K
Sbjct: 25  QVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGK 84

Query: 609 EGRRKIGH 632
             + +  +
Sbjct: 85  SKKLRAAY 92


>gb|EOY31496.1| DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao]
          Length = 978

 Score = 82.8 bits (203), Expect = 8e-14
 Identities = 37/68 (54%), Positives = 46/68 (67%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW K  EEY+EL  EMC   +APNLPYVK LFLGWF+P+R AI   QK  + K
Sbjct: 147 QVKEETEAWEKMVEEYRELQREMCEKKLAPNLPYVKGLFLGWFEPMREAIAREQKVQKGK 206

Query: 609 EGRRKIGH 632
             + +  +
Sbjct: 207 SKKLRAAY 214


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score = 82.8 bits (203), Expect = 8e-14
 Identities = 52/131 (39%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
 Frame = +3

Query: 237 NVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDXXXXXX 416
           N   A  ST +E   S  DEV++        + E  + E+  K H       +D      
Sbjct: 135 NAAEAVSSTDIEEDASVVDEVQE-------LLREMKKEEKKEKVHLRRVKRQEDLGMLEK 187

Query: 417 XXXX----QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDA 584
                   QV+ ETEAW KA  EYKEL  +MC   +APNLPYVKSLFLGWF+PLR AI  
Sbjct: 188 KYQSLKRRQVKIETEAWEKAANEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLREAIAK 247

Query: 585 LQKNHQAKEGR 617
            Q+ ++  + R
Sbjct: 248 DQELYRLGKNR 258


>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
           gi|550332836|gb|EEE88785.2| hypothetical protein
           POPTR_0008s11200g [Populus trichocarpa]
          Length = 988

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 35/55 (63%), Positives = 46/55 (83%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQK 593
           Q++ ETEAW +A +EY+E+ E+MC   +APNLPYVKSLFLGWF+PLR+AI A Q+
Sbjct: 149 QIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQE 203


>ref|XP_006373437.1| hypothetical protein POPTR_0017s137702g, partial [Populus
           trichocarpa] gi|550320259|gb|ERP51234.1| hypothetical
           protein POPTR_0017s137702g, partial [Populus
           trichocarpa]
          Length = 622

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 46/114 (40%), Positives = 61/114 (53%)
 Frame = +3

Query: 237 NVFRASVSTTLEPVVSSEDEVKDSFTRKLATVTESLRPEEHIKQHPIHHPDNDDXXXXXX 416
           +V  A  ST +E  VS  DEV++          E  + EEH  +  +             
Sbjct: 30  SVAEALSSTDVEDNVSGADEVQE-------LQPEMRKEEEHFSRRRLRANPGIGSRKHRV 82

Query: 417 XXXXQVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAI 578
               QV+ E EAW  AT+EYKEL ++MC   +APNLPY+KSLFLGWF+P  +AI
Sbjct: 83  LRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAI 136


>ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Brachypodium distachyon]
          Length = 943

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 38/76 (50%), Positives = 54/76 (71%)
 Frame = +3

Query: 429 QVETETEAWRKATEEYKELTEEMCASNMAPNLPYVKSLFLGWFDPLRNAIDALQKNHQAK 608
           QV+ ETEAW +A EEY++L  EM   N+AP+LPYVKSLFLGWF+PLR+AI       Q  
Sbjct: 115 QVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAI----ARDQEV 170

Query: 609 EGRRKIGHGHEEYMCM 656
           + R+++ H + +Y+ +
Sbjct: 171 QRRKRVKHVYAKYLLL 186