BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00005894
         (1600 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citr...   497   e-138
ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chl...   496   e-138
ref|XP_002304926.2| pseudouridine synthase family protein [Popul...   494   e-137
ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chl...   494   e-137
ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chlor...   494   e-137
ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chl...   491   e-136
ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [A...   491   e-136
gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus pe...   491   e-136
ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chlor...   490   e-136
ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [...   490   e-136
ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [...   484   e-134
ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chl...   484   e-134
gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma ...   484   e-134
gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus...   483   e-133
ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chlor...   483   e-133
ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   479   e-132
ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chlor...   475   e-131
ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...   473   e-130
ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chlor...   469   e-129
ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatul...   467   e-129

>ref|XP_006449066.1| hypothetical protein CICLE_v10015055mg [Citrus clementina]
            gi|557551677|gb|ESR62306.1| hypothetical protein
            CICLE_v10015055mg [Citrus clementina]
          Length = 487

 Score =  497 bits (1279), Expect = e-138
 Identities = 236/397 (59%), Positives = 293/397 (73%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPCPS+  PPR+EHL+V + G V++ I   L++P L+V DLI FGAV+YALVC
Sbjct: 83   YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ ++K+VT PSVL  R SIKGKTVREAQKTFRI+   ++VE G+Y+RVH
Sbjct: 143  PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y +DW SR+IA TES+VVLDKP GTSVGGTTDNI E+CA F +RA+GL TP
Sbjct: 203  VHPKRFPRCYDIDWKSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            LRTTHQ+DNCTEGCVVL++T E+CS FH K RE++VKKLYLALT A +P G + HYM   
Sbjct: 263  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTAAPLPVGIMTHYMRPI 322

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F KGW             PWP +T+  +  IE CGWPSR+ AYECK+ LL
Sbjct: 323  NIAPRLISEDFIKGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 382

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQ+RAQ A  GAP+VGD++YMPAAI+++ SP + PF +    E  +D+  + A+ E
Sbjct: 383  TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQK-EYASDDDKEMAVIE 441

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            WI QHG +P +AIGLQAC ISWD+G   Y+A  PWWR
Sbjct: 442  WISQHGKEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_006468002.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Citrus sinensis] gi|568827302|ref|XP_006468003.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Citrus sinensis]
          Length = 487

 Score =  496 bits (1278), Expect = e-138
 Identities = 236/397 (59%), Positives = 294/397 (74%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPCPS+  PPR+EHL+V + G V++ I   L++P L+V DLI FGAV+YALVC
Sbjct: 83   YPEYHRLLPCPSQNCPPRVEHLVVSEGGPVLEYICRELNLPPLFVADLIHFGAVYYALVC 142

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ ++K+VT PSVL  R SIKGKTVREAQKTFRI+   ++VE G+Y+RVH
Sbjct: 143  PKPPLTATPEQMRVFKEVTDPSVLSKRSSIKGKTVREAQKTFRITHVDQIVEAGTYLRVH 202

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y +DW+SR+IA TES+VVLDKP GTSVGGTTDNI E+CA F +RA+GL TP
Sbjct: 203  VHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTP 262

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            LRTTHQ+DNCTEGCVVL++T E+CS FH K RE++VKKLYLALTTA +P G + HYM   
Sbjct: 263  LRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYMRPI 322

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F  GW             PWP +T+  +  IE CGWPSR+ AYECK+ LL
Sbjct: 323  NIAPRLVSEDFITGWYLCQLEVMECKKVPWPDATVGKAYSIEDCGWPSRDYAYECKIKLL 382

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQ+RAQ A  GAP+VGD++YMPAAI+++ SP + PF +    E  +D+  + A+ E
Sbjct: 383  TGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQK-EYASDDDKEMAVIE 441

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            WI QHG +P +AIGLQAC ISWD+G   Y+A  PWWR
Sbjct: 442  WISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWR 478


>ref|XP_002304926.2| pseudouridine synthase family protein [Populus trichocarpa]
            gi|550340110|gb|EEE85437.2| pseudouridine synthase family
            protein [Populus trichocarpa]
          Length = 470

 Score =  494 bits (1273), Expect = e-137
 Identities = 236/400 (59%), Positives = 294/400 (73%), Gaps = 3/400 (0%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y+RLLPCPS   PPRIEHL+V + G V+D I +ALD+P L+V DLI FGAVHYALVC
Sbjct: 71   YPEYTRLLPCPSHNSPPRIEHLVVSEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVC 130

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ ++++VT+PSVLK R SIKGKTVREAQKTFRI+   + +E G Y+RVH
Sbjct: 131  PQPPRTATPEQIRVFEEVTAPSVLKKRASIKGKTVREAQKTFRITHVDQFLEAGMYLRVH 190

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y +DW SR+I  TES+VVLDKP GTSVGGTTDNI E+CA F TRA+GL  P
Sbjct: 191  VHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAP 250

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            LRTTHQ+DNCTEGCVVL++T E CS FH K RE+ VKKLY+AL  + +P G + HYM   
Sbjct: 251  LRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVNHYMRPI 310

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     EF KGW             PWP + ++    ++ CGWPS++ AYECK++LL
Sbjct: 311  NMAPRLVSEEFIKGWHLCQLEVMECKRVPWPDAVMEEKYCVQDCGWPSKDHAYECKINLL 370

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF---KQDNVIEDINDESVKAA 1426
            TGRTHQIRAQ A +GAP+VGD++YMPAA++ M SP   PF   K+    ED  D+++  A
Sbjct: 371  TGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSED--DKAI--A 426

Query: 1427 IDEWILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            ++EW+L HG +P +AIGLQACQISWD+G+ +Y A  PWWR
Sbjct: 427  VEEWVLCHGKEPNVAIGLQACQISWDDGKHIYNAGSPWWR 466


>ref|XP_003541622.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  494 bits (1272), Expect = e-137
 Identities = 231/398 (58%), Positives = 294/398 (73%), Gaps = 1/398 (0%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            +PKY RLLPCPS   PPRIEHL++ + G V+++I +ALD+P LYV DLI FGAV+YALVC
Sbjct: 82   FPKYDRLLPCPSHKNPPRIEHLVISEGGPVLELICKALDLPPLYVSDLIQFGAVYYALVC 141

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P  AT EQ+ ++K+VT PSVL+ R SIKGKTVREAQKTFR++   + VE G+Y+RVH
Sbjct: 142  PQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVH 201

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPRSY++DW SR+IA  ESYVVLDKP GTSVGGTTDNI E+CA F TRA+G+ TP
Sbjct: 202  VHPKRFPRSYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTP 261

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCVVL++T ++CS FH K RE++VKKLYLAL  + +P G + HYM   
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKDYCSIFHGKIREKKVKKLYLALAASPLPTGIITHYMRPI 321

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F KGW             PWP++ +Q    +E CGWPS++ AYECK++LL
Sbjct: 322  NMAPRLISEDFIKGWHLCQLEVLECRKIPWPTTAIQDKYCVEDCGWPSQDYAYECKINLL 381

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVK-AAID 1432
            TG+THQIRAQFA   AP++GD++YMPAAI+ + +P + PF +    +D + ES K  A+ 
Sbjct: 382  TGKTHQIRAQFAAYKAPLIGDSMYMPAAIADVSNPGLNPFGKYK--KDFSSESEKETAVV 439

Query: 1433 EWILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
             W+ QHG +P +AIGLQACQISWD+    Y+A LPWWR
Sbjct: 440  NWMAQHGKEPSVAIGLQACQISWDDDEHFYEAGLPWWR 477


>ref|XP_002264641.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic [Vitis vinifera]
            gi|302144082|emb|CBI23187.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  494 bits (1272), Expect = e-137
 Identities = 240/397 (60%), Positives = 292/397 (73%), Gaps = 1/397 (0%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPCPS+  PPR+EHL+V + G V+D IS+ALD+P L+V DLI FGAV+YALVC
Sbjct: 77   YPEYHRLLPCPSQNGPPRVEHLVVSEGGCVLDYISKALDLPPLFVADLIHFGAVYYALVC 136

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P +AT EQV L+K+VT+PSVL+ R SIKGKT+REAQKTFRI+D  E VE G+Y+RVH
Sbjct: 137  PEPPPSATPEQVRLFKEVTAPSVLRKRPSIKGKTIREAQKTFRITDVNEFVEAGTYLRVH 196

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y++DW SR+IA TESYVVLDKP GTSVGGTTDNI E+CA F TRA+GL TP
Sbjct: 197  VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTTP 256

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            LRTTHQ+DNCTEGCVVL++T E+CS FH K RE++VKKLY AL  A +P G + HYM   
Sbjct: 257  LRTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYRALAAAPMPIGIVTHYMRPV 316

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F KGW             PWPS+ ++    IE  GWP +  A++CK++LL
Sbjct: 317  NIAPRLISEDFIKGWYLCQLEVLECKEVPWPSTLIEEKYCIEDRGWPLKNSAFKCKINLL 376

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF-KQDNVIEDINDESVKAAID 1432
            TGRTHQIRAQ A  GAP+VGD++YMPAAI+ + SP + PF K        ND   + A+ 
Sbjct: 377  TGRTHQIRAQLAACGAPIVGDSMYMPAAIAEITSPGLNPFGKYKKKYTTENDR--ETAVA 434

Query: 1433 EWILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWW 1543
            EWI QHG +P +AIGLQACQISWD+G   YKA  PWW
Sbjct: 435  EWIAQHGKEPGVAIGLQACQISWDDGEHFYKAGSPWW 471


>ref|XP_006348094.1| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Solanum tuberosum] gi|565362724|ref|XP_006348095.1|
            PREDICTED: RNA pseudouridine synthase 6,
            chloroplastic-like isoform X2 [Solanum tuberosum]
          Length = 483

 Score =  491 bits (1264), Expect = e-136
 Identities = 233/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%)
 Frame = +2

Query: 362  KYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVCPI 541
            +Y RL+PCP +  PPR+EHL+V K G V++ I +ALD+P LYV+DLI FGAV+YALVCP 
Sbjct: 90   RYGRLMPCPLQNSPPRVEHLVVTKEGPVLEYICKALDLPPLYVEDLIQFGAVYYALVCPK 149

Query: 542  LPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVHVH 721
             P TA+ EQ+++Y++VT PS+L+ R SIKGKTVREAQKTF+I+ A E+VE G+Y+RVHVH
Sbjct: 150  PPPTASPEQIKVYEEVTDPSILRQRTSIKGKTVREAQKTFKITRADEIVEAGTYLRVHVH 209

Query: 722  PKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTPLR 901
            PKRFPR Y +DW SR+IA T+ YVVLDKP GTSVGGTTDNI E+CA F TRA+G   PL 
Sbjct: 210  PKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSAPLL 269

Query: 902  TTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXXXX 1081
            TTHQ+DNCTEGCVVL+++ E+CS FH K RE++VKKLYLAL  A +P G L HYM     
Sbjct: 270  TTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAAAPVPIGILTHYMRPINM 329

Query: 1082 XXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLLTG 1261
                   +F KGW             PWPSS +Q +  +E CGW  ++ AYEC+++LLTG
Sbjct: 330  APRLVSEDFVKGWLLCQLEVLECKKVPWPSSEIQRTYNLEDCGWALKDFAYECQINLLTG 389

Query: 1262 RTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF-KQDNVIEDINDESVKAAIDEW 1438
            RTHQIRAQ A   APVVGD++YMPAAI+ +  P   PF K   +  + ND+S+  AIDEW
Sbjct: 390  RTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSL--AIDEW 447

Query: 1439 ILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            I QHG +P +A+GLQACQISWD+G+  Y A LPWWR
Sbjct: 448  IAQHGKEPSVAVGLQACQISWDDGQHCYGARLPWWR 483


>ref|XP_006858058.1| hypothetical protein AMTR_s00062p00043970 [Amborella trichopoda]
            gi|548862161|gb|ERN19525.1| hypothetical protein
            AMTR_s00062p00043970 [Amborella trichopoda]
          Length = 477

 Score =  491 bits (1264), Expect = e-136
 Identities = 240/398 (60%), Positives = 289/398 (72%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP Y+ LLPCPS+  PPRIEHLIV + G V+D I +ALD+P L+V DLI FGAV+YALV 
Sbjct: 80   YPGYTSLLPCPSKNGPPRIEHLIVSEGGPVLDYICKALDLPTLFVADLIHFGAVYYALVS 139

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P +AT EQV+L+K+ T+ SVL+ R S+KGKTVREAQKTFRI+ A E VEEG+Y+RV+
Sbjct: 140  PEPPPSATPEQVKLFKEATARSVLRKRASLKGKTVREAQKTFRITHANEFVEEGTYLRVY 199

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y++DW SRVIAETESYVVLDKP  T+VGGT  NI E CA F +RA+GL  P
Sbjct: 200  VHPKRFPRCYEIDWRSRVIAETESYVVLDKPAATTVGGTPCNIEECCATFVSRALGLDFP 259

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            LRTTHQ+DNCTEGCVV SKT EFCS FH K RE+QVKKLYLAL TA +P G + HYM   
Sbjct: 260  LRTTHQIDNCTEGCVVFSKTKEFCSIFHGKIREKQVKKLYLALATAPVPVGVISHYMRPV 319

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +   GW             PWP + ++A   +E CGWPS++ AYECK++LL
Sbjct: 320  NRAPRIISKDHIGGWHLCQLEVLECKEVPWPRAAVEAQNGVEDCGWPSKDFAYECKINLL 379

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQIRAQ A  GAP+VGDT+Y+PA+I  +  PNI PF + N  E + DES   A++E
Sbjct: 380  TGRTHQIRAQLAACGAPIVGDTMYLPASIKEIAFPNINPFCEAN-SESMCDESKGEAVEE 438

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWRT 1549
            WI QHG +P  AIGLQAC+ISWD G   Y A  PWWR+
Sbjct: 439  WIAQHGKEPNAAIGLQACEISWDGGACFYTARAPWWRS 476


>gb|EMJ14726.1| hypothetical protein PRUPE_ppa020640mg [Prunus persica]
          Length = 477

 Score =  491 bits (1264), Expect = e-136
 Identities = 228/399 (57%), Positives = 293/399 (73%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y+RLLPCPS   PPR+EHL+V + G V++ I + LD+P  +V DLI FGAV+YALVC
Sbjct: 80   YPEYTRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKTLDLPPQFVADLIHFGAVYYALVC 139

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ ++K+VT+PSVLK+R SIKGKTVREAQKTFRI+ A E VE G+Y+RVH
Sbjct: 140  PKPPPTATPEQMRVFKEVTAPSVLKNRASIKGKTVREAQKTFRITHADEFVEAGTYLRVH 199

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y +DW SR+IA +E +VVLDKP GT+VGGTTDNI E+CA F TRA+GL TP
Sbjct: 200  VHPKRFPRCYDIDWKSRIIAVSEEFVVLDKPAGTTVGGTTDNIEESCATFATRALGLTTP 259

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCVVL++T E+CS FH K RE++VKKLYLAL  A +P G + HYM   
Sbjct: 260  LNTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALAAAPVPTGIITHYMRPI 319

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F + W             PWP++ ++    +E CGWPS++ AYECK++LL
Sbjct: 320  NVAPRLISEDFIERWSLCQLEVMECKEIPWPNAVVEEKYCVEDCGWPSKDYAYECKINLL 379

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQ+RAQ A  GAP+VGD++YMPAA++ M+SP + PF Q        +   + A+ E
Sbjct: 380  TGRTHQVRAQLAACGAPIVGDSMYMPAAVAEMESPGLNPFGQYKK-HYTTENDKETAVAE 438

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWRTE 1552
            WI +HG +P +AIGLQACQISWD+G+  ++A  PWWR +
Sbjct: 439  WIARHGKEPNVAIGLQACQISWDDGKHTFEARAPWWRCQ 477


>ref|XP_004232727.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Solanum
            lycopersicum]
          Length = 448

 Score =  490 bits (1262), Expect = e-136
 Identities = 233/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%)
 Frame = +2

Query: 362  KYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVCPI 541
            +Y RL+PCP +  PPR+EHL+V K G VV+ I +ALD+P LYV+DLI FGAV+YALVCP 
Sbjct: 55   RYGRLMPCPLQNSPPRVEHLVVTKEGPVVEYICKALDLPPLYVEDLIQFGAVYYALVCPK 114

Query: 542  LPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVHVH 721
             P TA+ EQ+++Y++VT PSVL+ R SIKGKTVREAQKTF+I+ A E+VE G+Y+RVHVH
Sbjct: 115  PPPTASPEQIKVYEEVTDPSVLRKRTSIKGKTVREAQKTFKITRADEIVEAGTYLRVHVH 174

Query: 722  PKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTPLR 901
            PKRFPR Y +DW SR+IA T+ YVVLDKP GTSVGGTTDNI E+CA F TRA+G   PL 
Sbjct: 175  PKRFPRCYDIDWKSRIIAVTDDYVVLDKPAGTSVGGTTDNIEESCATFATRALGFSAPLL 234

Query: 902  TTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXXXX 1081
            TTHQ+DNCTEGCVVL+++ E+CS FH K RE++V+KLYLAL  A +P G L HYM     
Sbjct: 235  TTHQIDNCTEGCVVLARSKEYCSVFHGKIREKKVRKLYLALAAAPVPIGILTHYMRPINM 294

Query: 1082 XXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLLTG 1261
                   +F KGW             PWPSS +Q +  +E CGW  ++ AYEC+++LLTG
Sbjct: 295  APRLVSRDFVKGWLLCQLEVLECQKVPWPSSEIQRTYNLEDCGWALKDYAYECQINLLTG 354

Query: 1262 RTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF-KQDNVIEDINDESVKAAIDEW 1438
            RTHQIRAQ A   APVVGD++YMPAAI+ +  P   PF K   +  + ND+S+  AIDEW
Sbjct: 355  RTHQIRAQLAACSAPVVGDSMYMPAAIAEIVCPGSNPFGKNKKLYSNENDKSL--AIDEW 412

Query: 1439 ILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            I QHG +P +A+GLQACQISWD+G+  Y A +PWWR
Sbjct: 413  IAQHGKEPSVAVGLQACQISWDDGQHCYGARMPWWR 448


>ref|XP_002518515.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542360|gb|EEF43902.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 476

 Score =  490 bits (1261), Expect = e-136
 Identities = 232/395 (58%), Positives = 290/395 (73%), Gaps = 1/395 (0%)
 Frame = +2

Query: 365  YSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVCPIL 544
            Y RLLPCPS   PPRIEHL+V + G V+D I +ALD+P L+V DLI FGAVHYALVCP  
Sbjct: 80   YDRLLPCPSYNRPPRIEHLVVLEEGPVLDYICKALDLPPLFVADLIDFGAVHYALVCPRP 139

Query: 545  PSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVHVHP 724
            P+TAT EQ+ L++K T+PSVLK R SIKGKTVREAQKTFRI+   + +E G+Y+RVHVHP
Sbjct: 140  PTTATPEQIRLFEKFTAPSVLKKRSSIKGKTVREAQKTFRITHVDQYLEAGTYLRVHVHP 199

Query: 725  KRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTPLRT 904
            KRFPR Y +DW SR+IA T+ YVVLDKP GTSVGGT DNI E+CA F TRA+GL TPL+T
Sbjct: 200  KRFPRCYDIDWKSRIIAVTDCYVVLDKPAGTSVGGTADNIEESCATFATRALGLTTPLKT 259

Query: 905  THQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXXXXX 1084
            THQ+DNCTEGCVVL+++ E+CS FH K RE++VKKLYLAL  + +P G + +YM      
Sbjct: 260  THQIDNCTEGCVVLARSKEYCSVFHGKIREKKVKKLYLALAASPVPVGVIKNYMRPVNIA 319

Query: 1085 XXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLLTGR 1264
                  EF  GW             PWP + ++    +E CGWPS++ AYECK++LLTGR
Sbjct: 320  PRLLSEEFVNGWHLCQLEVLECRKVPWPDAAIEEKYSVEDCGWPSKDFAYECKINLLTGR 379

Query: 1265 THQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF-KQDNVIEDINDESVKAAIDEWI 1441
            THQIRAQ A  GAP+VGD++YMPAA++ M +P + PF K      + +DES+  A+ EW+
Sbjct: 380  THQIRAQLAASGAPLVGDSMYMPAAVAEMANPGLNPFGKHRKQYTNESDESM--AVAEWV 437

Query: 1442 LQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
             QHG +P +AIGLQAC+ISWD G+ +YKA  PWWR
Sbjct: 438  AQHGKEPKVAIGLQACEISWDEGKHIYKAGSPWWR 472


>ref|XP_002518514.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542359|gb|EEF43901.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 395

 Score =  484 bits (1247), Expect = e-134
 Identities = 230/395 (58%), Positives = 286/395 (72%), Gaps = 1/395 (0%)
 Frame = +2

Query: 365  YSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVCPIL 544
            Y RLLPCPS+  PPR+EHL+V + G V+D I +ALD+P L+V DLI FGAVHYALVCP  
Sbjct: 3    YDRLLPCPSQNRPPRVEHLVVLEEGPVLDYICKALDLPPLFVADLIHFGAVHYALVCPQP 62

Query: 545  PSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVHVHP 724
            P TAT EQ+ L+++ T+PSVLK R SIKGKTVREAQKTFR+S   + +E G+Y+RV+VHP
Sbjct: 63   PPTATPEQIRLFEEFTAPSVLKKRASIKGKTVREAQKTFRVSSVHQFLEVGTYLRVYVHP 122

Query: 725  KRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTPLRT 904
            +RFPR Y++DW SR+IA TESYVVLDKP GTSVGGTT+NI ETCA F TRA+GL  PL+T
Sbjct: 123  RRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTNNIEETCATFATRALGLTIPLKT 182

Query: 905  THQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXXXXX 1084
            THQ+DNCTEGCVVL++T E+C  FH K RE +VKKLYLAL    +P G + HYM      
Sbjct: 183  THQIDNCTEGCVVLARTNEYCPVFHGKIRENKVKKLYLALAACPVPVGVITHYMRPGNIP 242

Query: 1085 XXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLLTGR 1264
                  EF +GW             PWP +  +    +E CGWPS++ AYECK++LLTGR
Sbjct: 243  PRLVSEEFIEGWYLCQLEVLECRKVPWPDTVTEEKYSVEDCGWPSKDFAYECKINLLTGR 302

Query: 1265 THQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF-KQDNVIEDINDESVKAAIDEWI 1441
            THQIRAQ A  GAP+VGD++YMPAAI+ M +P + PF K        NDES+  A  EW+
Sbjct: 303  THQIRAQLAACGAPLVGDSMYMPAAIAEMANPGVNPFGKHKKQYTGENDESMGVA--EWV 360

Query: 1442 LQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
             +HG +P +AIGLQAC+ISW + + +YKA  PWWR
Sbjct: 361  ERHGKEPSIAIGLQACEISWGDSKHIYKAGPPWWR 395


>ref|XP_003547248.2| PREDICTED: RNA pseudouridine synthase 6, chloroplastic-like isoform
            X1 [Glycine max]
          Length = 478

 Score =  484 bits (1246), Expect = e-134
 Identities = 230/398 (57%), Positives = 286/398 (71%), Gaps = 1/398 (0%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            + KY RLLPCPS   PPRIEHL+V + G V++ I +ALD+P LYV DLI FGAV+YALVC
Sbjct: 82   FRKYDRLLPCPSHKTPPRIEHLVVSEGGPVLEHICKALDLPPLYVSDLIQFGAVYYALVC 141

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P  AT EQ+ ++K+VT PSVL+ R SIKGKTVREAQKTFR++   + VE G+Y+RVH
Sbjct: 142  PQPPPNATEEQIRVFKEVTEPSVLRKRASIKGKTVREAQKTFRVTHVDQFVEPGTYLRVH 201

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKR PR Y++DW SR+I   ESYVVLDKP GTSVGGTTDNI E+CA F TRA+G+ TP
Sbjct: 202  VHPKRSPRCYEIDWRSRIITVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGMTTP 261

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCVVL++T E+CS FH K RE++VKK YLAL    +P G + HYM   
Sbjct: 262  LMTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKFYLALAAFPLPTGIITHYMRPI 321

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F KGW             PWP++ +Q    IE CGWPS++ AYECK++LL
Sbjct: 322  DMAPRLISEDFIKGWHLCQLEVLECRKVPWPATAIQDKYCIEDCGWPSQDYAYECKINLL 381

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVK-AAID 1432
            TG+THQIRAQFA   AP++GD++YMPAAI+ M +P + PF +    +D + ES K  A+ 
Sbjct: 382  TGKTHQIRAQFAAYKAPLIGDSMYMPAAIANMSNPGLNPFGKYK--KDFSSESEKETAVV 439

Query: 1433 EWILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
             WI QHG +P +AIGLQACQISWD+    Y+A  PWWR
Sbjct: 440  NWIAQHGKEPSVAIGLQACQISWDDDEHFYEASSPWWR 477


>gb|EOY28643.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 491

 Score =  484 bits (1246), Expect = e-134
 Identities = 228/398 (57%), Positives = 288/398 (72%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPCPS   PPR+EHL+V + G V++ I +ALD+P ++V DLI FGAV+YALVC
Sbjct: 93   YPEYHRLLPCPSHNGPPRVEHLVVSEGGPVLEYICKALDLPPMFVADLIHFGAVYYALVC 152

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P +AT EQ+ ++K+VT+PSVL  R SI+GKTVREAQKTFRI+   + VE G+Y+RVH
Sbjct: 153  PQPPPSATPEQIRIFKEVTAPSVLSKRTSIRGKTVREAQKTFRITHVDQFVEAGTYLRVH 212

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y++DW SR+IA T+SYVVLDKP GTSVGGTTDNI E+CA F  RA+G  TP
Sbjct: 213  VHPKRFPRCYEIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCATFANRALGFSTP 272

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L+TTHQ+DNCTEGCVVL++T E+CS FH K RE++VKKLYLALT A +P G + HYM   
Sbjct: 273  LKTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALTAAPLPIGVITHYMRPI 332

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +F KGW             PWP   +Q +  IE  GWP ++ AYECK++LL
Sbjct: 333  NMAPRLVSEDFIKGWYLCQLEVMECKKVPWPDYVIQENYCIEDSGWPLKDHAYECKINLL 392

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQ+RAQ A  GAP++GD++YMP  I+ + +P + PF +       ND+ +  AI E
Sbjct: 393  TGRTHQVRAQLAACGAPILGDSMYMPPTIAEIANPGLNPFGKYKKHTSENDKEI--AITE 450

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWRT 1549
            WI Q G +P +AIGLQACQISWD+G   YKA  PWWR+
Sbjct: 451  WISQFGKEPSVAIGLQACQISWDDGEHFYKARSPWWRS 488


>gb|ESW19737.1| hypothetical protein PHAVU_006G151200g [Phaseolus vulgaris]
          Length = 478

 Score =  483 bits (1243), Expect = e-133
 Identities = 230/397 (57%), Positives = 288/397 (72%), Gaps = 1/397 (0%)
 Frame = +2

Query: 359  PKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVCP 538
            PKY RLLPCP    PPR+EHL+V + G V++ I +AL++P LYV DLI FGAV+YALVCP
Sbjct: 83   PKYDRLLPCPLHKTPPRVEHLVVSEGGPVLEHICKALELPPLYVTDLIQFGAVYYALVCP 142

Query: 539  ILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVHV 718
              P +AT EQ+ ++K+VT PSVL+ R SIKGKTVREAQKTFR++ A + VE G+Y+RVHV
Sbjct: 143  QPPPSATEEQIRVFKEVTEPSVLRQRASIKGKTVREAQKTFRVTHADQFVEPGTYLRVHV 202

Query: 719  HPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTPL 898
            HPKRFPR Y++DW SR+I+  ESYVVLDKP GTSVGGTTDNI E+CA F TRA+GL  PL
Sbjct: 203  HPKRFPRCYEIDWRSRIISVAESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAPL 262

Query: 899  RTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXXX 1078
             TTHQ+DNCTEGCVVL++T E+CS FH K RE++VKKLYLAL ++ +P G + HYM    
Sbjct: 263  MTTHQIDNCTEGCVVLARTKEYCSVFHGKIREKKVKKLYLALASSPLPTGIITHYMRPIN 322

Query: 1079 XXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLLT 1258
                    +F KGW             PWP+ ++Q    +E CGWP ++ AYECK++LLT
Sbjct: 323  MAPRLISEDFIKGWLMCQLEIQECRKVPWPTPSIQDKYCVEDCGWPYQDFAYECKINLLT 382

Query: 1259 GRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVK-AAIDE 1435
            GRTHQIRAQFA   AP+VGD++YMPAAI  M +P + PF +     D + ES K  A+  
Sbjct: 383  GRTHQIRAQFAACRAPLVGDSMYMPAAIGDMSNPGLNPFGKYK--RDFSSESEKETAVVN 440

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            WI QHG +P +AIGLQACQISWD+    Y++  PWWR
Sbjct: 441  WIAQHGKEPGVAIGLQACQISWDDDDHFYESGSPWWR 477


>ref|XP_004293270.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 477

 Score =  483 bits (1243), Expect = e-133
 Identities = 231/398 (58%), Positives = 292/398 (73%), Gaps = 1/398 (0%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP Y+RLLPCPS+  PPR+EHL+V + G V++ I + LD+P  +V DLI FGAV+YALVC
Sbjct: 81   YP-YTRLLPCPSQNGPPRVEHLVVSEGGPVLEYICKKLDLPAQFVADLIHFGAVYYALVC 139

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ +YK+VT+PSVLK R SIKGKTVREAQKTFRI+ A + VE+G+Y+RVH
Sbjct: 140  PKPPPTATPEQMRVYKEVTAPSVLKKRDSIKGKTVREAQKTFRITHADQYVEDGTYLRVH 199

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y +DW SRVIA TE +VVLDKP GT+VGGTTDNI E+CA FT+RA+GL TP
Sbjct: 200  VHPKRFPRCYDIDWKSRVIAVTEDFVVLDKPAGTTVGGTTDNIEESCATFTSRALGLSTP 259

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCVVL++T ++CS FH K RE++VKKLYLAL  A +P G + HYM   
Sbjct: 260  LMTTHQIDNCTEGCVVLARTKDYCSVFHGKIREKKVKKLYLALAAAPVPLGTITHYMRPI 319

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +  + W             PWPSS ++    +E CGWPS++ AYECK++LL
Sbjct: 320  NVAPRLISEDSIERWSLCQLEVMECKKVPWPSSVIEEEYGVEDCGWPSKDYAYECKINLL 379

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPF-KQDNVIEDINDESVKAAID 1432
            TG+THQIRAQ A  G P+VGD++YMPAAI+ M++P + PF K        NDE +  A+ 
Sbjct: 380  TGKTHQIRAQLAACGTPLVGDSMYMPAAIAEMENPELNPFGKHKKHYAGENDEEI--AVT 437

Query: 1433 EWILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWR 1546
            EW+ +HG +P +AIGLQACQISWD+G   ++A  PWWR
Sbjct: 438  EWMARHGKEPIVAIGLQACQISWDDGEHSFEARAPWWR 475


>ref|XP_004486127.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cicer arietinum]
          Length = 467

 Score =  479 bits (1234), Expect = e-132
 Identities = 232/428 (54%), Positives = 296/428 (69%), Gaps = 13/428 (3%)
 Frame = +2

Query: 302  CRSAHXXXXXXXXXXXXXYPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPR 481
            CRS+H             YPKY+RLLPCP+  +PPRIEH++V + G V++ I +ALD+P 
Sbjct: 44   CRSSHNSSAVAFSLS---YPKYNRLLPCPTHKIPPRIEHIVVSEGGPVLEYICKALDLPP 100

Query: 482  LYVKDLILFGAVHYALVCPILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTF 661
            L+V DLI FGAV++ALVCP  P TATAE++ ++KK T P VL+ R SIKGKT+REAQKTF
Sbjct: 101  LFVADLIKFGAVYFALVCPKPPPTATAEEIRVFKKATEPLVLRKRASIKGKTIREAQKTF 160

Query: 662  RISDAAEVVEEGSYMRVHVHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDN 841
             ++D  + VE G+Y+RVHVHPKRFPR Y++DW SR+IA  ESYV+LDKP GTSVGGTT N
Sbjct: 161  LVTDVDQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVEESYVILDKPAGTSVGGTTGN 220

Query: 842  IYETCANFTTRAIGLKTPLRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLA 1021
              E+CANF TRA+ L TPL TTHQ+DNCTEGCVVL++  E+CS FH K RE++VKK+YLA
Sbjct: 221  TEESCANFATRALELTTPLMTTHQIDNCTEGCVVLARNKEYCSVFHGKIREKKVKKIYLA 280

Query: 1022 LTTAYIPPGKLIHYM------------XXXXXXXXXXXXEFTKGWQXXXXXXXXXXXXPW 1165
            L  + +P G + HYM                         F KGW             PW
Sbjct: 281  LAASPLPTGIIKHYMRPINMAPRLISEGXTTQIGMHSKDYFNKGWHICQLEVLECIKIPW 340

Query: 1166 PSSTLQASAFIEGCGWPSREVAYECKVDLLTGRTHQIRAQFADIGAPVVGDTIYMPAAIS 1345
            P++ +Q    +E CGWPS++ AYECK++LLTGRTHQIRAQFA   AP++GD++YMPAAI+
Sbjct: 341  PTTVVQEKYCVEDCGWPSQDYAYECKINLLTGRTHQIRAQFAACKAPLIGDSMYMPAAIA 400

Query: 1346 RMKSPNIYPFKQDNVIEDINDESVK-AAIDEWILQHGNDPPLAIGLQACQISWDNGRKVY 1522
             M +P + PF +    +D   ES K  A+  WI QHG +P +AIGLQACQISWD+G  +Y
Sbjct: 401  EMMNPGLNPFGKYK--KDFTSESEKETAVINWIAQHGKEPSVAIGLQACQISWDDGEHIY 458

Query: 1523 KAHLPWWR 1546
            +A  PWWR
Sbjct: 459  EAGSPWWR 466


>ref|XP_004151517.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  475 bits (1223), Expect = e-131
 Identities = 227/399 (56%), Positives = 285/399 (71%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPCPS + PPR+EH++V + G V++ I ++L++P LYV DLI FGAV+YALVC
Sbjct: 76   YPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALVC 135

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ L+KK T PS LK R SIKGKTVREAQKTFRI+   E VE G+Y+RVH
Sbjct: 136  PQPPKTATPEQIRLFKKFTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRVH 195

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y++DW SR+IA TESYVVLDKP GTSVGGTTDNI E+CA F TRA+GL +P
Sbjct: 196  VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSP 255

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCV+ ++T E+CS FH K RE++V KLYLAL+ A +P G + HYM   
Sbjct: 256  LWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRPI 315

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +   GW              WP + ++A   +E CGWPS++ AYEC+++LL
Sbjct: 316  NIAPRLVSKDCIDGWIICQLEVLECREVSWPDADIEAKYRVEDCGWPSKKKAYECRINLL 375

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQIRAQ AD GAP+VGD++YMPA ++ M SP + PF +    E  N+E  + A+ E
Sbjct: 376  TGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKK-EYTNEEDKETAVAE 434

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWRTE 1552
            W   HG +P +AIGLQA +ISWD+    Y A  PWWR E
Sbjct: 435  WSALHGKEPAVAIGLQAYEISWDSREHSYNAGTPWWRQE 473


>ref|XP_004158048.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 6,
            chloroplastic-like [Cucumis sativus]
          Length = 475

 Score =  473 bits (1217), Expect = e-130
 Identities = 225/399 (56%), Positives = 284/399 (71%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPCPS + PPR+EH++V + G V++ I ++L++P LYV DLI FGAV+YALVC
Sbjct: 76   YPQYHRLLPCPSFSKPPRVEHMVVLEAGPVMEYICKSLNLPPLYVADLIHFGAVYYALVC 135

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TAT EQ+ L+K  T PS LK R SIKGKTVREAQKTFRI+   E VE G+Y+RVH
Sbjct: 136  PQPPKTATPEQIRLFKNXTEPSFLKGRKSIKGKTVREAQKTFRITHVDEFVEVGTYLRVH 195

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y++DW SR+IA TESYVVLDKP GTSVGGTTDNI E+CA F TRA+GL +P
Sbjct: 196  VHPKRFPRCYEIDWKSRIIAVTESYVVLDKPAGTSVGGTTDNIEESCATFATRALGLTSP 255

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCV+ ++T E+CS FH K RE++V KLYLAL+ A +P G + HYM   
Sbjct: 256  LWTTHQIDNCTEGCVIFARTKEYCSIFHGKIREKKVMKLYLALSAAPVPMGIITHYMRPI 315

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +   GW              WP +  +A   +E CGWPS++ AYEC+++LL
Sbjct: 316  NIAPRLVSKDCIDGWIICQLEVLECREVSWPDADTEAKYRVEDCGWPSKKKAYECRINLL 375

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQIRAQ AD GAP+VGD++YMPA ++ M SP + PF +    E  N+E  + ++ E
Sbjct: 376  TGRTHQIRAQLADCGAPLVGDSMYMPAVVAEMGSPGLNPFGKCKK-EYTNEEDKETSVAE 434

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWRTE 1552
            W   HG +P +AIGLQA +ISWD+   +Y A  PWWR E
Sbjct: 435  WSALHGKEPAVAIGLQAYEISWDSREHIYNAGTPWWRQE 473


>ref|XP_004158017.1| PREDICTED: RNA pseudourine synthase 6, chloroplastic-like [Cucumis
            sativus]
          Length = 475

 Score =  469 bits (1207), Expect = e-129
 Identities = 224/399 (56%), Positives = 286/399 (71%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YP+Y RLLPC S  +PPR+EHL+V + G V++ IS++LD+P +YV DLI FGAV+YALVC
Sbjct: 76   YPQYHRLLPCTSFNVPPRVEHLVVLEGGPVMEYISKSLDLPPMYVADLIHFGAVYYALVC 135

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TA++E++ L+KK T PS L  R SIKGKT+REAQKTFRI+   E VE G+Y+RV+
Sbjct: 136  PQPPPTASSEEIRLFKKFTQPSFLIGRKSIKGKTLREAQKTFRITHIDEFVEVGTYLRVY 195

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y+VDW SR+IA T+SYVVLDKP GTSVGGTT+NI ETC  F TRA+GL +P
Sbjct: 196  VHPKRFPRCYEVDWKSRIIAVTDSYVVLDKPAGTSVGGTTNNIEETCVTFATRALGLTSP 255

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCV+L++T E+CS FH K RE++V KLYLAL    +P G + HYM   
Sbjct: 256  LWTTHQIDNCTEGCVILARTKEYCSIFHRKIREKKVTKLYLALVAVPLPKGIMTHYMRPN 315

Query: 1076 XXXXXXXXXEFTKGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPSREVAYECKVDLL 1255
                     +   GW              WP + ++A   IE CGWPS++ A+ECK++LL
Sbjct: 316  NLAPRLVSRDCIDGWNLCQLEVLECREVSWPDADIEAKYSIEDCGWPSKKKAFECKINLL 375

Query: 1256 TGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIEDINDESVKAAIDE 1435
            TGRTHQIR Q AD GAP+VGD+IYMPAA++ M +P + PF +    E  ++E  + A+ E
Sbjct: 376  TGRTHQIRVQLADYGAPLVGDSIYMPAAVAEMANPGLNPFGKCKK-EYTSEEDKENAVAE 434

Query: 1436 WILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWWRTE 1552
            WI  HG +P +AIGLQA +ISWD+G  +Y A  PWWR E
Sbjct: 435  WIALHGKEPAVAIGLQAYEISWDSGEHIYNAGTPWWRQE 473


>ref|XP_003626283.1| RNA pseudourine synthase [Medicago truncatula]
            gi|355501298|gb|AES82501.1| RNA pseudourine synthase
            [Medicago truncatula]
          Length = 462

 Score =  467 bits (1201), Expect = e-129
 Identities = 229/409 (55%), Positives = 288/409 (70%), Gaps = 13/409 (3%)
 Frame = +2

Query: 356  YPKYSRLLPCPSEALPPRIEHLIVQKTGNVVDIISEALDIPRLYVKDLILFGAVHYALVC 535
            YPKY RLLPCPS  +PPRIEHL+V + G V+  I +ALD+P L+V DLI FGAV++ALV 
Sbjct: 57   YPKYDRLLPCPSHKIPPRIEHLVVSQEGPVLQYICKALDLPHLFVADLIQFGAVYFALVS 116

Query: 536  PILPSTATAEQVELYKKVTSPSVLKDRISIKGKTVREAQKTFRISDAAEVVEEGSYMRVH 715
            P  P TATAEQ+ ++++VT P VL+ R S+KGKT+REAQKTFR++DA + VE G+Y+RVH
Sbjct: 117  PEPPPTATAEQIRIFEQVTEPLVLQKRSSLKGKTIREAQKTFRVTDANQFVEPGTYLRVH 176

Query: 716  VHPKRFPRSYQVDWHSRVIAETESYVVLDKPVGTSVGGTTDNIYETCANFTTRAIGLKTP 895
            VHPKRFPR Y++DW SR+IA  ESYVVLDKP GTSVG TT NI E+C  F TRA+GL TP
Sbjct: 177  VHPKRFPRCYEIDWRSRIIAVEESYVVLDKPAGTSVGETTGNIEESCVTFATRALGLTTP 236

Query: 896  LRTTHQLDNCTEGCVVLSKTLEFCSEFHSKFRERQVKKLYLALTTAYIPPGKLIHYMXXX 1075
            L TTHQ+DNCTEGCVVL++  E+CS FH K RE++VKK+YLAL  + +P G + HYM   
Sbjct: 237  LITTHQIDNCTEGCVVLARNKEYCSVFHCKIREKKVKKIYLALAASPLPIGIIKHYMRPT 296

Query: 1076 XXXXXXXXXEFT------------KGWQXXXXXXXXXXXXPWPSSTLQASAFIEGCGWPS 1219
                       +            KGW             PWP+  +Q     E CGWPS
Sbjct: 297  NTAPRLISEGNSTQIGMLCKDYCIKGWHICQLEVMDCRKIPWPAIVVQD----EYCGWPS 352

Query: 1220 REVAYECKVDLLTGRTHQIRAQFADIGAPVVGDTIYMPAAISRMKSPNIYPFKQDNVIED 1399
            ++ AYECK++LLTGRTHQIRAQFA   AP++GDT+YMPAAI+ M +P + PF + N  +D
Sbjct: 353  QDYAYECKINLLTGRTHQIRAQFAACKAPIIGDTMYMPAAIAEMINPGLNPFGKYN--KD 410

Query: 1400 INDES-VKAAIDEWILQHGNDPPLAIGLQACQISWDNGRKVYKAHLPWW 1543
             + ES  K A+  WI QHG +P +AIGLQACQISWD+   +Y+A LPWW
Sbjct: 411  FSSESEKKTAVINWIAQHGKEPSVAIGLQACQISWDDDEYIYRAGLPWW 459