BLASTX nr result
ID: Ephedra27_contig00005649
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00005649
(597 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ... 110 4e-22
gb|ABK21111.1| unknown [Picea sitchensis] 106 5e-21
ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_... 104 2e-20
gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK257... 103 3e-20
ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, I... 102 8e-20
ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, I... 101 1e-19
dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare] 101 1e-19
ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, part... 101 2e-19
gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 k... 100 3e-19
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp.... 99 1e-18
ref|XP_005851333.1| hypothetical protein CHLNCDRAFT_19308 [Chlor... 98 1e-18
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I... 98 1e-18
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ... 98 1e-18
ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, I... 98 2e-18
ref|XP_001784402.1| predicted protein [Physcomitrella patens] gi... 98 2e-18
ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, I... 96 7e-18
ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, I... 95 1e-17
gb|AFK41236.1| unknown [Medicago truncatula] 95 1e-17
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ... 95 1e-17
ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutr... 94 3e-17
>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
DNA-directed RNA polymerase I, II, and III polypeptide
isoform 2, partial [Zea mays]
Length = 100
Score = 110 bits (274), Expect = 4e-22
Identities = 52/69 (75%), Positives = 58/69 (84%)
Frame = -3
Query: 541 TKLRIILIASSVDLATMDGPQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT 362
T LR +++ +TMD PQ P+PVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT
Sbjct: 33 TSLRTTCRRKTLERSTMD-PQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT 91
Query: 361 SRVVQYEAR 335
R+VQYEAR
Sbjct: 92 RRIVQYEAR 100
>gb|ABK21111.1| unknown [Picea sitchensis]
Length = 53
Score = 106 bits (264), Expect = 5e-21
Identities = 46/53 (86%), Positives = 50/53 (94%)
Frame = -3
Query: 493 MDGPQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
MDGP P+PVSY+CGDCGAEN+LKPGDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 1 MDGPAVPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_001172391.1|
Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
sativa Japonica Group] gi|242048352|ref|XP_002461922.1|
hypothetical protein SORBIDRAFT_02g010660 [Sorghum
bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Setaria italica] gi|195609858|gb|ACG26759.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
hypothetical protein OsI_02267 [Oryza sativa Indica
Group] gi|222618595|gb|EEE54727.1| hypothetical protein
OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein
SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein
SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
Japonica Group] gi|255676033|dbj|BAH92949.1|
Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 104 bits (260), Expect = 2e-20
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
PQ P+PVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 3 PQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>gb|ABK22384.1| unknown [Picea sitchensis] gi|116790944|gb|ABK25799.1| unknown
[Picea sitchensis] gi|148909877|gb|ABR18025.1| unknown
[Picea sitchensis] gi|224284970|gb|ACN40214.1| unknown
[Picea sitchensis] gi|224286085|gb|ACN40753.1| unknown
[Picea sitchensis]
Length = 53
Score = 103 bits (258), Expect = 3e-20
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = -3
Query: 493 MDGPQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
MDG P+PVSY+CGDCGAEN+LKPGDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 1 MDGHAAPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Setaria italica]
Length = 52
Score = 102 bits (254), Expect = 8e-20
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
PQ P+PVSYLCGDCG+ENTLKPGDVIQCR+CGYRILYKKRT R+VQYEAR
Sbjct: 3 PQQPEPVSYLCGDCGSENTLKPGDVIQCRDCGYRILYKKRTHRIVQYEAR 52
>ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Brachypodium distachyon]
Length = 52
Score = 101 bits (252), Expect = 1e-19
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
PQ P+PVSYLCGDCGAENTLK GDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 3 PQQPEPVSYLCGDCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 52
Score = 101 bits (252), Expect = 1e-19
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
PQ P+PVSYLCGDCGAENTLK GDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 3 PQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, partial [Capsella rubella]
gi|482553592|gb|EOA17785.1| hypothetical protein
CARUB_v10006178mg, partial [Capsella rubella]
Length = 68
Score = 101 bits (251), Expect = 2e-19
Identities = 48/65 (73%), Positives = 53/65 (81%)
Frame = -3
Query: 529 IILIASSVDLATMDGPQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVV 350
II+ + TMD P P+PV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRT RVV
Sbjct: 5 IIIKNPRIQFNTMDQPL-PEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVV 63
Query: 349 QYEAR 335
QYEAR
Sbjct: 64 QYEAR 68
>gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
Length = 52
Score = 100 bits (249), Expect = 3e-19
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
PQ P+PVSYLCGDCGAENTLKPGDVIQ RECGYRILYKKRT R+VQYEAR
Sbjct: 3 PQQPEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 98.6 bits (244), Expect = 1e-18
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P P+PV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRT RVVQYEAR
Sbjct: 3 PAQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52
>ref|XP_005851333.1| hypothetical protein CHLNCDRAFT_19308 [Chlorella variabilis]
gi|307110996|gb|EFN59231.1| hypothetical protein
CHLNCDRAFT_19308 [Chlorella variabilis]
Length = 62
Score = 98.2 bits (243), Expect = 1e-18
Identities = 43/50 (86%), Positives = 46/50 (92%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P GP V+Y+CGDCGAENTLKPGDVI+CRECGYRILYKKRT RVVQYEAR
Sbjct: 12 PTGPVQVAYICGDCGAENTLKPGDVIRCRECGYRILYKKRTKRVVQYEAR 61
>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4 [Vitis
vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
product [Vitis vinifera]
Length = 51
Score = 98.2 bits (243), Expect = 1e-18
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -3
Query: 475 PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P+PVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 5 PEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 12 [Glycine max]
gi|567912183|ref|XP_006448405.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
gi|557551016|gb|ESR61645.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|561025849|gb|ESW24534.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
Length = 51
Score = 98.2 bits (243), Expect = 1e-18
Identities = 42/47 (89%), Positives = 45/47 (95%)
Frame = -3
Query: 475 PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P+PVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 97.8 bits (242), Expect = 2e-18
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = -3
Query: 484 PQGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
PQ P+PVSYLCGDCGAENTLK GDVIQ RECGYRILYKKRT R+VQYEAR
Sbjct: 3 PQQPEPVSYLCGDCGAENTLKSGDVIQSRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_001784402.1| predicted protein [Physcomitrella patens]
gi|162664073|gb|EDQ50807.1| predicted protein
[Physcomitrella patens]
Length = 56
Score = 97.8 bits (242), Expect = 2e-18
Identities = 44/56 (78%), Positives = 49/56 (87%), Gaps = 3/56 (5%)
Frame = -3
Query: 493 MDGPQG---PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
MDG P+PV+YLCGDCGA+NTLKPGDVIQCRECGYRILYKKRT R+VQ+EAR
Sbjct: 1 MDGSMSAPPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56
>ref|XP_004248221.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Solanum lycopersicum]
Length = 52
Score = 95.9 bits (237), Expect = 7e-18
Identities = 42/49 (85%), Positives = 45/49 (91%)
Frame = -3
Query: 481 QGPQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
Q +PVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 4 QPVEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Cucumis sativus]
Length = 51
Score = 95.1 bits (235), Expect = 1e-17
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -3
Query: 475 PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P+PVSY+CGDCG ENTLK GDVIQCRECGYRILYKKRT R+VQYEAR
Sbjct: 5 PEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>gb|AFK41236.1| unknown [Medicago truncatula]
Length = 51
Score = 95.1 bits (235), Expect = 1e-17
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -3
Query: 475 PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P+PVSYLCGDCG ENTLK GDVIQCR+CGYRILYKKRT R+VQYEAR
Sbjct: 5 PEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 51
>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula] gi|355484947|gb|AES66150.1|
DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Medicago truncatula]
Length = 121
Score = 95.1 bits (235), Expect = 1e-17
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -3
Query: 475 PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P+PVSYLCGDCG ENTLK GDVIQCR+CGYRILYKKRT R+VQYEAR
Sbjct: 18 PEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 64
Score = 73.6 bits (179), Expect = 4e-11
Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -3
Query: 571 GYQYITSHKETKLRIILIASSVDLAT-MDGPQGPQPVSYLCGDCGAENTLKPGDVIQCRE 395
GY+ + +K+ RI+ + + L MD P PQP+ YLCGDCGAE L V+QC
Sbjct: 46 GYRIL--YKKRTRRIVQYEARLLLKPDMDPP--PQPIRYLCGDCGAETPLYTDGVLQCCV 101
Query: 394 CGYRILYKKRTSRVVQYEAR 335
C Y+ILYKKRT RV+QYEAR
Sbjct: 102 CFYKILYKKRTHRVLQYEAR 121
>ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutrema salsugineum]
gi|557106544|gb|ESQ46859.1| hypothetical protein
EUTSA_v10028022mg [Eutrema salsugineum]
Length = 51
Score = 94.0 bits (232), Expect = 3e-17
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -3
Query: 475 PQPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTSRVVQYEAR 335
P+PV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRT RVVQYEAR
Sbjct: 5 PEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51