BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00005492
         (1636 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006286758.1| hypothetical protein CARUB_v10003199mg [Caps...    67   2e-08
ref|XP_004252307.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    64   2e-07
ref|XP_002522000.1| ubiquitin-protein ligase, putative [Ricinus ...    62   7e-07
ref|NP_568800.1| F-box/FBD/LRR-repeat protein [Arabidopsis thali...    60   3e-06
ref|XP_006346603.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g...    60   4e-06
ref|XP_002865998.1| hypothetical protein ARALYDRAFT_495460 [Arab...    59   6e-06

>ref|XP_006286758.1| hypothetical protein CARUB_v10003199mg [Capsella rubella]
           gi|482555464|gb|EOA19656.1| hypothetical protein
           CARUB_v10003199mg [Capsella rubella]
          Length = 463

 Score = 67.4 bits (163), Expect = 2e-08
 Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 13/264 (4%)
 Frame = +3

Query: 234 KCAVICSVLSKRWINLYKMLPCLYLGGHEFCKLEEDGSNFGEISPLVYERAATAIIRHQT 413
           K AV   VLSKRW +L+  +P L LG      +EE  + + E + +++   +   I  +T
Sbjct: 37  KVAVRTCVLSKRWKSLWLSVPLLDLG------VEEFRAGYSEFARVLH---SFLDISRET 87

Query: 414 RVHVLNLTAFLN------LSNWKWCLEHFTEQNIQNLTLRM--SDYDGQFQLIPLCLFTC 569
           R+H L L    N      L+ W   + +     +Q+L + +  + Y G  +L+PLCL+TC
Sbjct: 88  RIHKLILYLTRNQRDQSYLTQW---IHNAVMLKVQHLDINICSASYVGT-KLMPLCLYTC 143

Query: 570 SSLVNLDLSVYQKPRDVNLSTLQGFPNLIGCNLEFEISSEYEHVNEWLDLLSSRCPLLQH 749
            +L++L L     P   N+S     P L   +L   I +     +  L+ L S CP+L+ 
Sbjct: 144 ETLLSLKLYHVALPDFENVS----LPRLKIMHLNDNIYTS----DALLENLISSCPVLED 195

Query: 750 LKVDVSLLENLTVDPMRIQSSSLLHLDIEFANI----CEDMQIQLTVQTPELLSMKMRSY 917
           LKV   +     V  +R++  SL  L I   ++     ED   ++ +  P L  + +  +
Sbjct: 196 LKVFRYVGIENVVKVLRVRCQSLKSLQIFLHSVWYQASEDDDCKVVIDAPGLSCLNLEDH 255

Query: 918 LIRPCEKAVVV-QITAPKLLEISV 986
               C K+ V+  +T+P  ++I V
Sbjct: 256 ----CSKSFVISSLTSPVKVDIDV 275


>ref|XP_004252307.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform 1
           [Solanum lycopersicum]
          Length = 419

 Score = 63.5 bits (153), Expect = 2e-07
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
 Frame = +3

Query: 258 LSKRWINLYKMLPCLYLGGHEFCK--LEEDGSNFGEISPLVYERAATAIIRHQTRVHVLN 431
           LSK W  ++  LP L L  +EFC   ++E  S F E+   +       I++    V V +
Sbjct: 44  LSKSWRYIWSELPKLVLY-YEFCDELIDESESKFREVVDGIMLLHMGKIVQFDLDVRVED 102

Query: 432 LTAFLNLSNWKWCLEHFTEQNIQNLTLRMSDYDGQFQLIPLCLFTCSSLVNLDLSVYQ-K 608
           L ++  +  W   + + T  +++ L LR+S+ D +   +P C+F CS+L  L L+    K
Sbjct: 103 LASYTAIDRW---VLYVTRNSVKKLHLRISNIDDRSYALPPCVFHCSTLTQLKLARCSFK 159

Query: 609 PRDVNLSTLQGFPNLIGCNLEFEISSEYEHVNEWL--DLLSSRCPLLQHLKVDVSLLENL 782
           P D    + +GFPNL+   L     SE+  +   L  +L  + C  +Q+L +   +L++L
Sbjct: 160 PPD----SFRGFPNLVTLRLASVTFSEHCVIKAPLLANLTLNCCDGMQYLNIVSPVLKSL 215

Query: 783 TV 788
            V
Sbjct: 216 YV 217


>ref|XP_002522000.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223538804|gb|EEF40404.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 429

 Score = 62.0 bits (149), Expect = 7e-07
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 7/214 (3%)
 Frame = +3

Query: 231 YKCAVICSVLSKRWINLYKMLPCLYLGGHEFCKLEEDGSNFGEISPLVYERAATAII-RH 407
           +K AV  S LSK+W   + M+P          ++  D + F E S    E     I+ RH
Sbjct: 30  FKDAVRTSTLSKKWKEKWHMVP----------QIVVDKNFFHERSQRKLEGIINYILARH 79

Query: 408 QTRVHVLNLTA-----FLNLSNWKWCLEHFTEQNIQNLTLRMSDYDGQFQLIPLCLFTCS 572
           +  +   +L+      + NL  W W L   ++++IQ LTL +  +DG+   +P  LF+C 
Sbjct: 80  EGTIEKFSLSVEEVNNYYNLKLWIWWL---SQKSIQELTLLI--WDGRRNEMPSGLFSCQ 134

Query: 573 SLVNLDLSVYQKPRDVNLSTLQGFPNLIGCNLEFEISSEYEHVNEWLDLLSSRCPLLQHL 752
            L  L+L  ++        + +GF NL+   L+     + +     L+ L + CPLL+ L
Sbjct: 135 QLRKLNLRYFEV---TPAHSFKGFRNLVSLQLD-----KVKIATALLERLIASCPLLERL 186

Query: 753 KV-DVSLLENLTVDPMRIQSSSLLHLDIEFANIC 851
           +V ++S +++L ++   + +     +D EF +IC
Sbjct: 187 RVRNLSYIDHLHIN---VPTLKYFSVDGEFKSIC 217


>ref|NP_568800.1| F-box/FBD/LRR-repeat protein [Arabidopsis thaliana]
           gi|75333820|sp|Q9FGQ3.1|FDL37_ARATH RecName:
           Full=F-box/FBD/LRR-repeat protein At5g53840
           gi|10176949|dbj|BAB10069.1| unnamed protein product
           [Arabidopsis thaliana] gi|67633880|gb|AAY78864.1| F-box
           family protein [Arabidopsis thaliana]
           gi|332009029|gb|AED96412.1| F-box/FBD/LRR-repeat protein
           [Arabidopsis thaliana]
          Length = 444

 Score = 60.1 bits (144), Expect = 3e-06
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 1/237 (0%)
 Frame = +3

Query: 228 SYKCAVICSVLSKRWINLYKMLPCLYLGGHEFCKLEEDGSNFGEISPLVYERAATAIIRH 407
           S K AV  S+LS RW NL++++P L     E     E  S  G    L  +         
Sbjct: 36  STKDAVRTSILSTRWRNLWQLVPVLDFDSRELRSFSEFVSFAGSFFYLHKDSYI-----Q 90

Query: 408 QTRVHVLNLTAFLNLSNWKWCLEHFTEQNIQNLTLRMSDYDGQFQLIPLCLFTCSSLVNL 587
           + RV + +L     L++W   ++  T   IQ++ + +    G F +IPL L+TC +LV+L
Sbjct: 91  KLRVCIYDLAGNYYLTSW---IDLVTRHRIQHIDISVFTCSG-FGVIPLSLYTCDTLVHL 146

Query: 588 DLSVYQKPRDVNLSTLQGFPNLIGCNLEFEISSEYEHVNE-WLDLLSSRCPLLQHLKVDV 764
            LS   +   VN+  +   P L   +L+F         NE  LD + S  P+L+ L +  
Sbjct: 147 KLS---RVTMVNVEFV-SLPCLKILDLDF-----VNFTNETTLDKIISCSPVLEELTIVK 197

Query: 765 SLLENLTVDPMRIQSSSLLHLDIEFANICEDMQIQLTVQTPELLSMKMRSYLIRPCE 935
           S  +N+ +  +R Q+   + +   F     D    L + TP L  + ++++ I+  E
Sbjct: 198 SSEDNVKIIQVRSQTLKRVEIHRRF-----DRHNGLVIDTPLLQFLSIKAHSIKSIE 249


>ref|XP_006346603.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Solanum
           tuberosum]
          Length = 419

 Score = 59.7 bits (143), Expect = 4e-06
 Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
 Frame = +3

Query: 258 LSKRWINLYKMLPCLYLGGHEFCK--LEEDGSNFGEISPLVYERAATAIIRHQTRVHVLN 431
           LSK W  ++  LP + L  +EFC   ++E  S F E+   +       I++    V V +
Sbjct: 44  LSKSWRYIWSELPKMVLD-YEFCDELIDESESKFREVVDGIMLLHMGKIVKFDLDVRVED 102

Query: 432 LTAFLNLSNWKWCLEHFTEQNIQNLTLRMSDYDGQFQLIPLCLFTCSSLVNLDLS--VYQ 605
           L ++  +  W   + + T  +++ L LR+S+   +   +P C+F CS+L  L L+   ++
Sbjct: 103 LASYTAIDRW---VLYVTRNSVKKLHLRISNIGDRTYTLPPCIFHCSTLTQLKLARCSFK 159

Query: 606 KPRDVNLSTLQGFPNLIGCNLEFEISSEYEHVNEWL--DLLSSRCPLLQHLKVDVSLLEN 779
            P      + +GFPNL+   L     SE+  +   L  +L  + C  +Q+L +   +L++
Sbjct: 160 PP-----GSFRGFPNLVTLRLASVTFSEHCVIKAPLLANLTLNCCDGMQYLNIVSPVLKS 214

Query: 780 LTV 788
           L V
Sbjct: 215 LYV 217


>ref|XP_002865998.1| hypothetical protein ARALYDRAFT_495460 [Arabidopsis lyrata subsp.
           lyrata] gi|297311833|gb|EFH42257.1| hypothetical protein
           ARALYDRAFT_495460 [Arabidopsis lyrata subsp. lyrata]
          Length = 401

 Score = 58.9 bits (141), Expect = 6e-06
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 1/232 (0%)
 Frame = +3

Query: 234 KCAVICSVLSKRWINLYKMLPCLYLGGHEFCKLEEDGSNFGEISPLVYERAATAIIRHQT 413
           K AV  S+LS RW NL++++P L L G EF         F +I            +R   
Sbjct: 19  KEAVRTSILSTRWRNLWQLVPVLDLNGREFRLFVSFVGRFFDIHK--DSCIQKLCLRISD 76

Query: 414 RVHVLNLTAFLNLSNWKWCLEHFTEQNIQNLTLRMSDYDGQFQLIPLCLFTCSSLVNLDL 593
           +     LT++++L          T + IQ++ +    Y  +F  IPL L+TC +LV+L L
Sbjct: 77  QAGKSYLTSWIDL---------VTRRRIQHIDISHVFYRPEFGDIPLSLYTCDTLVHLRL 127

Query: 594 SVYQKPRDVNLSTLQGFPNLIGCNLEFEISSEYEHVNE-WLDLLSSRCPLLQHLKVDVSL 770
           S+      VN+  +   P L   +LEF      ++ NE  LD L S  P+L+ L +    
Sbjct: 128 SLLTM---VNVEFV-SLPCLKILHLEF-----VKYTNETTLDKLISCSPVLEDLTIAKYS 178

Query: 771 LENLTVDPMRIQSSSLLHLDIEFANICEDMQIQLTVQTPELLSMKMRSYLIR 926
            +N  V  ++++S +L  +DI   +   D   +L + TP L  + ++++ I+
Sbjct: 179 EDNANV--LQVRSQTLKRVDI---HGWFDRHTRLVIDTPLLQFLMIQTHSIK 225