BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00005253
         (1420 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004293709.1| PREDICTED: ATP-dependent Clp protease proteo...   299   2e-78
gb|ABK24027.1| unknown [Picea sitchensis]                             296   2e-77
ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteo...   294   7e-77
ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteo...   293   2e-76
gb|EMJ12905.1| hypothetical protein PRUPE_ppa009315mg [Prunus pe...   291   6e-76
gb|ESW30143.1| hypothetical protein PHAVU_002G128500g [Phaseolus...   290   1e-75
gb|EXB75190.1| ATP-dependent Clp protease proteolytic subunit 4 ...   287   9e-75
gb|EOY25432.1| ATP-dependent Clp protease proteolytic subunit 4 ...   287   9e-75
gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (C...   286   1e-74
ref|XP_006471624.1| PREDICTED: ATP-dependent Clp protease proteo...   285   4e-74
gb|AFK33568.1| unknown [Lotus japonicus]                              284   7e-74
ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subun...   284   7e-74
dbj|BAA82068.1| nClpP4 [Arabidopsis thaliana]                         283   1e-73
ref|NP_568644.1| ATP-dependent Clp protease proteolytic subunit ...   283   1e-73
ref|XP_006279656.1| hypothetical protein CARUB_v10026821mg, part...   283   1e-73
ref|XP_006398213.1| hypothetical protein EUTSA_v10000978mg [Eutr...   283   2e-73
ref|XP_004146125.1| PREDICTED: ATP-dependent Clp protease proteo...   282   2e-73
ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteo...   282   2e-73
ref|XP_006364458.1| PREDICTED: ATP-dependent Clp protease proteo...   281   4e-73
ref|XP_004245978.1| PREDICTED: ATP-dependent Clp protease proteo...   281   4e-73

>ref|XP_004293709.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 296

 Score =  299 bits (766), Expect = 2e-78
 Identities = 152/243 (62%), Positives = 184/243 (75%)
 Frame = -1

Query: 1069 HSVKGKALMGDTMAVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLL 890
            HS     L+    A QTP  A R AEGD MGLLLRERIV LG +IDDFVAD I+SQLLLL
Sbjct: 58   HSTNPSVLLSS--APQTPATAMRGAEGDAMGLLLRERIVFLGSSIDDFVADSIISQLLLL 115

Query: 889  DANDPKKDIKLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGK 710
            DA DPKKDIKLF+NS GGS++AT+ I+D +QL RADV TIALG AASTASIIL GG KGK
Sbjct: 116  DAQDPKKDIKLFINSTGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGK 175

Query: 709  RLSMPNARIMMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDR 530
            R +MPN R+M+HQP G A GQ  DVEIQA+EVMH K  V RI+S +TGR  +QVEKDIDR
Sbjct: 176  RFAMPNTRVMIHQPLGGASGQAIDVEIQAREVMHNKDNVTRIISNVTGRSYEQVEKDIDR 235

Query: 529  DCYMAPMEAADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDD 350
            D YM+P+EA +YG+IDGVID D +LP+ P+P  +K R  Y+ +    D ++++TP + DD
Sbjct: 236  DRYMSPIEAVEYGIIDGVIDGDSILPLEPVPDKVKPRMSYEEI--SKDPMKFLTPDVPDD 293

Query: 349  EIF 341
            EI+
Sbjct: 294  EIY 296


>gb|ABK24027.1| unknown [Picea sitchensis]
          Length = 317

 Score =  296 bits (757), Expect = 2e-77
 Identities = 148/233 (63%), Positives = 179/233 (76%)
 Frame = -1

Query: 1042 GDTMAVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDI 863
            G  +A QTP  AQRSA+GDVMGLLLR+RIV LG  +DDFVAD I+SQLLLLDA +P KDI
Sbjct: 86   GGVIAQQTPASAQRSADGDVMGLLLRQRIVFLGSNMDDFVADAIISQLLLLDAQNPNKDI 145

Query: 862  KLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARI 683
            +LF+N  GGSINA +GIFD IQLCRADV TIA G AASTASI+LAGG+KGKRL+MPN RI
Sbjct: 146  RLFINCPGGSINAAMGIFDTIQLCRADVSTIAFGLAASTASIVLAGGSKGKRLAMPNTRI 205

Query: 682  MMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEA 503
            MMHQP G A G   DVEIQAKE+M+ K  V RI+SE TGR  +QV+ D+DRD YM+PMEA
Sbjct: 206  MMHQPLGGASGSAIDVEIQAKEIMYHKSNVTRIISERTGRSTEQVDNDMDRDRYMSPMEA 265

Query: 502  ADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEI 344
             +YGLIDGVIDK+ ++P+  +P  +K         +  D+ +++TP I DDEI
Sbjct: 266  VEYGLIDGVIDKESIIPLPILPETVK--PTLSFAEASKDFDKFITPHIPDDEI 316


>ref|XP_003534318.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Glycine max]
          Length = 306

 Score =  294 bits (752), Expect = 7e-77
 Identities = 159/298 (53%), Positives = 202/298 (67%), Gaps = 9/298 (3%)
 Frame = -1

Query: 1207 LQSASSCPVLPISCSGNGKALSSVPKPFSLGMTWHQK---------PLKKGCMARHSVKG 1055
            +++ SS P  PIS S        +PKP S       +         P K       S   
Sbjct: 16   IRTLSSNPKPPISSS-----FFFIPKPHSRFSKTPPRCVFTPASPIPSKNPNFGSQSRNP 70

Query: 1054 KALMGDTMAVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDP 875
             +L  +  + QTP  A R AEGDVMGLLLRERIV LG +IDDFVAD I+SQ+LLLDA DP
Sbjct: 71   TSLTFELSSPQTPSTAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQMLLLDAQDP 130

Query: 874  KKDIKLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMP 695
             KDI+LF+NS GGS++AT+ I+DA+QL RADV T+ALG AASTAS+IL GG KGKR +MP
Sbjct: 131  TKDIRLFINSTGGSLSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMP 190

Query: 694  NARIMMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMA 515
            N RIM+HQP G A GQ  DVEIQAKEVMH K  + RI+S  TGR  +QV+KDIDRD YM+
Sbjct: 191  NTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKYMS 250

Query: 514  PMEAADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            P+EA +YG+IDGVID+D ++P+ P+P  +K   +Y+ +    D  +++TP I DDEI+
Sbjct: 251  PIEAVEYGIIDGVIDRDSIIPLMPVPERVKSTLNYEEI--SKDPRKFLTPDIPDDEIY 306


>ref|XP_003517082.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Glycine max]
          Length = 306

 Score =  293 bits (749), Expect = 2e-76
 Identities = 147/240 (61%), Positives = 183/240 (76%)
 Frame = -1

Query: 1060 KGKALMGDTMAVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDAN 881
            +   L  +  A QTP  A R AEGDVMGLLLRERIV LG +IDDFVAD I+SQLLLLDA 
Sbjct: 69   RNPGLTFELSAPQTPSTAARGAEGDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAL 128

Query: 880  DPKKDIKLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLS 701
            DP KDI+LF+NS GGS++AT+ I+DA+QL RADV T+ALG AASTAS+IL GG KGKR +
Sbjct: 129  DPTKDIRLFINSTGGSLSATMAIYDAVQLVRADVSTVALGIAASTASVILGGGTKGKRFA 188

Query: 700  MPNARIMMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCY 521
            MPN RIM+HQP G A GQ  DVEIQAKEVMH K  + RI+S  TGR  +QV+KDIDRD Y
Sbjct: 189  MPNTRIMVHQPLGGASGQAIDVEIQAKEVMHNKNNITRIISSFTGRSFEQVQKDIDRDKY 248

Query: 520  MAPMEAADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            M+P+EA +YG+IDGVID+D ++P+ P+P  +K   +Y+ +    D  +++TP I DDEI+
Sbjct: 249  MSPIEAVEYGIIDGVIDRDSIIPLMPVPERVKSTLNYEEI--SKDPRKFLTPDIPDDEIY 306


>gb|EMJ12905.1| hypothetical protein PRUPE_ppa009315mg [Prunus persica]
          Length = 297

 Score =  291 bits (744), Expect = 6e-76
 Identities = 149/243 (61%), Positives = 183/243 (75%), Gaps = 3/243 (1%)
 Frame = -1

Query: 1060 KGKALMGDTM---AVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLL 890
            K +AL G  +   A QTP  A R  EGD +GLLLRERIV LG +IDDFVAD I+SQLLLL
Sbjct: 57   KSQALDGSLLISSAPQTPATAMRGTEGDALGLLLRERIVFLGSSIDDFVADAIISQLLLL 116

Query: 889  DANDPKKDIKLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGK 710
            DA D KKDIKLF+NS GGS++AT+ I+D +QL RADV T+ALG AASTASIIL GG KGK
Sbjct: 117  DAQDSKKDIKLFINSTGGSLSATMAIYDVVQLVRADVCTVALGIAASTASIILGGGTKGK 176

Query: 709  RLSMPNARIMMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDR 530
            R +MPN RIM+HQP G A GQ  DVEIQA+EVMH K  V RILS  TGR  +QV+KDIDR
Sbjct: 177  RFAMPNTRIMIHQPLGGASGQAIDVEIQAREVMHNKNNVTRILSNSTGRPFEQVQKDIDR 236

Query: 529  DCYMAPMEAADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDD 350
            D YM+P+EA +YG+IDGVID D ++P+ P+P  +K R  Y+ +    D ++++TP + DD
Sbjct: 237  DRYMSPIEAVEYGIIDGVIDGDSIIPLVPVPDKVKPRMSYEEI--SKDPMKFLTPDVPDD 294

Query: 349  EIF 341
            EI+
Sbjct: 295  EIY 297


>gb|ESW30143.1| hypothetical protein PHAVU_002G128500g [Phaseolus vulgaris]
          Length = 306

 Score =  290 bits (742), Expect = 1e-75
 Identities = 143/228 (62%), Positives = 179/228 (78%)
 Frame = -1

Query: 1024 QTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNS 845
            QTP  A R AEGDVMGLLLRERIV LG +IDDFVAD ++SQLLLLDA DP KDI+LF+NS
Sbjct: 81   QTPATASRGAEGDVMGLLLRERIVFLGSSIDDFVADAVMSQLLLLDAKDPTKDIRLFINS 140

Query: 844  HGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPF 665
             GGS++AT+ I+DA+QL RADV T+ALG AASTASIIL GG KGKR +MPN RIM+HQP 
Sbjct: 141  TGGSLSATMAIYDAVQLVRADVSTVALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPL 200

Query: 664  GSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLI 485
            G A GQ  DVEIQAKEVMH K  + RI+S  +GR  +QV+KDIDRD YM+P+EA +YG+I
Sbjct: 201  GGASGQAIDVEIQAKEVMHNKNNITRIISSFSGRSFEQVQKDIDRDKYMSPIEAVEYGII 260

Query: 484  DGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            DGVID+D ++P+ P+P  +K   +Y+ +    D  +++ P+I DDEI+
Sbjct: 261  DGVIDRDRIIPLMPVPDRVKSTLNYEEI--SKDPRKFLNPEIPDDEIY 306


>gb|EXB75190.1| ATP-dependent Clp protease proteolytic subunit 4 [Morus notabilis]
          Length = 293

 Score =  287 bits (734), Expect = 9e-75
 Identities = 153/294 (52%), Positives = 200/294 (68%), Gaps = 4/294 (1%)
 Frame = -1

Query: 1210 LLQSASSCPVLPISCSGNGKALSSVPKPFSLGMTWHQKPLKKGCMARHSVKGKALMGDTM 1031
            +L  +S  P   +  S   K +SS   P S   T       K   +  S K ++L+  ++
Sbjct: 3    VLSLSSPIPSFKLPNSSRPKPISS-HLPISSLKTKRASSFAKCFQSTSSSKPQSLLTPSL 61

Query: 1030 AV----QTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDI 863
             +    QTP  A RSAE D MGLLLRERIV LG +IDDF+AD I+SQLLLLDA D  KDI
Sbjct: 62   LLASSPQTPDTAMRSAESDAMGLLLRERIVFLGSSIDDFIADAIISQLLLLDAQDSTKDI 121

Query: 862  KLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARI 683
            KLF+NS GGS++AT+ I+D +QL RADV T+ALG AASTAS+IL GG KGKR +MPN RI
Sbjct: 122  KLFINSTGGSLSATMAIYDVVQLVRADVSTVALGIAASTASVILGGGTKGKRFAMPNTRI 181

Query: 682  MMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEA 503
            M+HQP G A GQ  DVEIQA+E+MH K  V  I++  TGR  +QV+KDIDRD YM+P+EA
Sbjct: 182  MIHQPLGGASGQAIDVEIQAREIMHNKNNVTSIIAHCTGRTFEQVQKDIDRDRYMSPIEA 241

Query: 502  ADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
             +YGL+DGVID+D ++P+ P+P  +K R  Y+ +    D  +++TP + DDEI+
Sbjct: 242  VEYGLLDGVIDRDSIIPLVPVPERVKARITYEEI--SKDPRKFLTPDVPDDEIY 293


>gb|EOY25432.1| ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]
          Length = 288

 Score =  287 bits (734), Expect = 9e-75
 Identities = 143/230 (62%), Positives = 177/230 (76%)
 Frame = -1

Query: 1030 AVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFV 851
            A Q+P  A R AE D MGLLLRERIV LG  IDDFVAD I+SQLLLLDA DP KDI+LF+
Sbjct: 61   APQSPATAMRGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPNKDIRLFI 120

Query: 850  NSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQ 671
            NS GGS++AT+ I+D +QL RADV T+ALG AASTASIIL GG KGKRL+MPN RIM+HQ
Sbjct: 121  NSPGGSLSATMAIYDVVQLVRADVSTVALGIAASTASIILGGGTKGKRLAMPNTRIMIHQ 180

Query: 670  PFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYG 491
            P G A GQ  DVEIQA+E+MH K  V RI+S  TGR  +QV+KDIDRD YM+P+EA +YG
Sbjct: 181  PLGGASGQAIDVEIQAQEIMHNKNNVTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 240

Query: 490  LIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            +IDGVID+D ++P+ P+P  +K   +Y+ +    D  +++TP I DDEI+
Sbjct: 241  IIDGVIDRDSIIPLAPVPERVKASLNYEEI--SKDPRKFLTPDIPDDEIY 288


>gb|AAM65254.1| ATP-dependent Clp protease proteolytic subunit (ClpP4) [Arabidopsis
            thaliana]
          Length = 292

 Score =  286 bits (732), Expect = 1e-74
 Identities = 158/278 (56%), Positives = 194/278 (69%), Gaps = 3/278 (1%)
 Frame = -1

Query: 1165 SGNGKALSSVPKPFSLGMTWHQKPLKKGCMARHSVKGKALMGDTMAV---QTPGFAQRSA 995
            S +  + SS PKP +L    + KP K       +     L     ++   QT   A R A
Sbjct: 21   SSSSASSSSFPKPNNL----YLKPTKLISPPLRTTSPSPLRFANASIEMSQTQESAIRGA 76

Query: 994  EGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNSHGGSINATLG 815
            E DVMGLLLRERIV LG +IDDFVAD I+SQLLLLDA DPKKDIKLF+NS GGS++AT+ 
Sbjct: 77   ESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMA 136

Query: 814  IFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPFGSAGGQVADV 635
            I+D +QL RADV TIALG AASTASIIL  G KGKR +MPN RIM+HQP G A GQV DV
Sbjct: 137  IYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQVIDV 196

Query: 634  EIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLIDGVIDKDFVL 455
            EIQAKEVMH K  V  I++  T R  +QV KDIDRD YM+P+EA +YGLIDGVID D ++
Sbjct: 197  EIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSII 256

Query: 454  PVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            P+ P+P  +K R +Y+ +    D I+++TP+I DDEI+
Sbjct: 257  PLEPVPDRVKPRVNYEEI--SKDPIKFLTPEIPDDEIY 292


>ref|XP_006471624.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like isoform X1 [Citrus sinensis]
            gi|568835115|ref|XP_006471625.1| PREDICTED: ATP-dependent
            Clp protease proteolytic subunit 4, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 297

 Score =  285 bits (728), Expect = 4e-74
 Identities = 141/229 (61%), Positives = 174/229 (75%)
 Frame = -1

Query: 1030 AVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFV 851
            A QTP  A R AE D MGLLLRERIV LG  IDDFVAD I+SQLLLLDA DP KDI+LFV
Sbjct: 70   APQTPATAMRGAEADAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDPTKDIRLFV 129

Query: 850  NSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQ 671
            NS GGS++AT+ I+D +QL RADV T+ALG +ASTAS+IL GG KGKR +MPN R+M+HQ
Sbjct: 130  NSPGGSLSATMAIYDVVQLVRADVSTVALGMSASTASLILGGGTKGKRFAMPNTRVMIHQ 189

Query: 670  PFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYG 491
            P G A GQV DVEIQA+E+MH K    RI+S  TGR  +QV+KDIDRD YM+P+EA +YG
Sbjct: 190  PMGGASGQVLDVEIQAREIMHNKDNFTRIISGFTGRSFEQVQKDIDRDRYMSPIEAVEYG 249

Query: 490  LIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEI 344
            +IDGVID+D ++P+ P+P  +K   DY  +    D  +++TP + DDEI
Sbjct: 250  IIDGVIDRDSIIPLVPVPEKVKPGFDY--LEVRKDPRKFLTPDVPDDEI 296


>gb|AFK33568.1| unknown [Lotus japonicus]
          Length = 308

 Score =  284 bits (726), Expect = 7e-74
 Identities = 145/228 (63%), Positives = 176/228 (77%)
 Frame = -1

Query: 1024 QTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNS 845
            QTP  A R AE D M LLLRERIV LG  IDDFVAD I+SQLLLLDA DP KDIKLF+NS
Sbjct: 83   QTPATAIRGAETDAMWLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFINS 142

Query: 844  HGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPF 665
             GGS++AT+ I+DA+QL RADV TIALG AASTASIIL GG KGKR +MPN RIM+HQP 
Sbjct: 143  PGGSLSATMAIYDAVQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNTRIMIHQPL 202

Query: 664  GSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLI 485
            G A GQ  DVEIQAKEVMH K  V RI+S  TGR  +QV+KDIDRD YM+P+EA +YG+I
Sbjct: 203  GGASGQAIDVEIQAKEVMHNKNNVTRIISGFTGRTFEQVQKDIDRDRYMSPIEAVEYGII 262

Query: 484  DGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            DGVIDK+ ++P+ P+P  ++   +Y+ +    D  +++TP+I DDEI+
Sbjct: 263  DGVIDKESIIPLEPVPERVRSTLNYEEI--SKDPRKFLTPEIPDDEIY 308


>ref|XP_002519881.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
            communis] gi|223540927|gb|EEF42485.1| ATP-dependent Clp
            protease proteolytic subunit, putative [Ricinus communis]
          Length = 294

 Score =  284 bits (726), Expect = 7e-74
 Identities = 141/230 (61%), Positives = 173/230 (75%)
 Frame = -1

Query: 1030 AVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFV 851
            A QTP  A R AE D MGLLLRERIV LG  IDDFVAD  +SQLLLLDA DP KDI+LF+
Sbjct: 67   APQTPATAMRGAESDAMGLLLRERIVFLGNNIDDFVADATISQLLLLDAQDPTKDIRLFI 126

Query: 850  NSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQ 671
            N  GGS++AT+ I+D +QL RADV T+ALG +ASTASIIL GG KGKR +MPN RIM+HQ
Sbjct: 127  NCPGGSLSATMAIYDVVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMVHQ 186

Query: 670  PFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYG 491
            P G A GQ  DVEIQA+E+MH K  V+RI+S  TGR  +QV KDIDRD YM+P+EA +YG
Sbjct: 187  PLGGASGQAIDVEIQAREIMHNKNNVVRIISGFTGRTVEQVLKDIDRDRYMSPIEAVEYG 246

Query: 490  LIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            +IDGVID D ++P+ P+P  +K    Y+ M    D ++++TP + DDEIF
Sbjct: 247  IIDGVIDGDSIIPLAPVPERVKPTLSYEEMRK--DPMKFLTPDVPDDEIF 294


>dbj|BAA82068.1| nClpP4 [Arabidopsis thaliana]
          Length = 299

 Score =  283 bits (725), Expect = 1e-73
 Identities = 156/278 (56%), Positives = 193/278 (69%), Gaps = 3/278 (1%)
 Frame = -1

Query: 1165 SGNGKALSSVPKPFSLGMTWHQKPLKKGCMARHSVKGKALMGDTMAV---QTPGFAQRSA 995
            S +  + SS PKP +L    + KP K       +     L     ++   QT   A R A
Sbjct: 28   SSSSASSSSFPKPNNL----YLKPTKLISPPLRTTSPSPLRFANASIEMSQTQESAIRGA 83

Query: 994  EGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNSHGGSINATLG 815
            E DVMGLLLRERIV LG +IDDFVAD I+SQLLLLDA DPKKDIKLF+NS GGS++AT+ 
Sbjct: 84   ESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMA 143

Query: 814  IFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPFGSAGGQVADV 635
            I+D +QL RADV TIALG AASTASIIL  G KGKR +MPN RIM+HQP G A GQ  DV
Sbjct: 144  IYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDV 203

Query: 634  EIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLIDGVIDKDFVL 455
            EIQAKEVMH K  V  I++  T R  +QV KDIDRD YM+P+EA +YGLIDGVID D ++
Sbjct: 204  EIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSII 263

Query: 454  PVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            P+ P+P  +K R +Y+ +    D ++++TP+I DDEI+
Sbjct: 264  PLEPVPDRVKPRVNYEEI--SKDPMKFLTPEIPDDEIY 299


>ref|NP_568644.1| ATP-dependent Clp protease proteolytic subunit 4 [Arabidopsis
            thaliana] gi|297794727|ref|XP_002865248.1| hypothetical
            protein ARALYDRAFT_494440 [Arabidopsis lyrata subsp.
            lyrata] gi|75306344|sp|Q94B60.1|CLPP4_ARATH RecName:
            Full=ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic; AltName: Full=Endopeptidase ClpP4;
            Short=nClpP4; AltName: Full=nClpP3; Flags: Precursor
            gi|14596089|gb|AAK68772.1| ATP-dependent Clp
            protease-like protein [Arabidopsis thaliana]
            gi|30023792|gb|AAP13429.1| At5g45390 [Arabidopsis
            thaliana] gi|297311083|gb|EFH41507.1| hypothetical
            protein ARALYDRAFT_494440 [Arabidopsis lyrata subsp.
            lyrata] gi|332007860|gb|AED95243.1| ATP-dependent Clp
            protease proteolytic subunit 4 [Arabidopsis thaliana]
          Length = 292

 Score =  283 bits (725), Expect = 1e-73
 Identities = 156/278 (56%), Positives = 193/278 (69%), Gaps = 3/278 (1%)
 Frame = -1

Query: 1165 SGNGKALSSVPKPFSLGMTWHQKPLKKGCMARHSVKGKALMGDTMAV---QTPGFAQRSA 995
            S +  + SS PKP +L    + KP K       +     L     ++   QT   A R A
Sbjct: 21   SSSSASSSSFPKPNNL----YLKPTKLISPPLRTTSPSPLRFANASIEMSQTQESAIRGA 76

Query: 994  EGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNSHGGSINATLG 815
            E DVMGLLLRERIV LG +IDDFVAD I+SQLLLLDA DPKKDIKLF+NS GGS++AT+ 
Sbjct: 77   ESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMA 136

Query: 814  IFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPFGSAGGQVADV 635
            I+D +QL RADV TIALG AASTASIIL  G KGKR +MPN RIM+HQP G A GQ  DV
Sbjct: 137  IYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDV 196

Query: 634  EIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLIDGVIDKDFVL 455
            EIQAKEVMH K  V  I++  T R  +QV KDIDRD YM+P+EA +YGLIDGVID D ++
Sbjct: 197  EIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSII 256

Query: 454  PVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            P+ P+P  +K R +Y+ +    D ++++TP+I DDEI+
Sbjct: 257  PLEPVPDRVKPRVNYEEI--SKDPMKFLTPEIPDDEIY 292


>ref|XP_006279656.1| hypothetical protein CARUB_v10026821mg, partial [Capsella rubella]
            gi|482548360|gb|EOA12554.1| hypothetical protein
            CARUB_v10026821mg, partial [Capsella rubella]
          Length = 310

 Score =  283 bits (724), Expect = 1e-73
 Identities = 157/279 (56%), Positives = 191/279 (68%), Gaps = 4/279 (1%)
 Frame = -1

Query: 1165 SGNGKALSSVPKPFSLGMTWHQKPLKKGCMARHSVKGKALM----GDTMAVQTPGFAQRS 998
            S +  + SS PKP SL    + KP K       +     L           QT   A R 
Sbjct: 38   SSSSASSSSFPKPNSL----YLKPTKLVSPPLRTTSPSPLRFANASSIEMSQTQESAIRG 93

Query: 997  AEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNSHGGSINATL 818
            AE DVMGLLLRERIV LG +IDDFVAD I+SQLLLLDA DPKKDIKLF+NS GGS++AT+
Sbjct: 94   AESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATM 153

Query: 817  GIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPFGSAGGQVAD 638
             I+D +QL RADV TIALG AASTASIIL  G KGKR +MPN RIM+HQP G A GQ  D
Sbjct: 154  AIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAID 213

Query: 637  VEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLIDGVIDKDFV 458
            VEIQAKEVMH K  V  I++  T R  +QV KDIDRD YM+P+EA +YGLIDGVID D +
Sbjct: 214  VEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSI 273

Query: 457  LPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            +P+ P+P  +K R +Y+ +    D ++++TP+I DDEI+
Sbjct: 274  IPLEPVPDRVKPRVNYEEI--SKDPMKFLTPEIPDDEIY 310


>ref|XP_006398213.1| hypothetical protein EUTSA_v10000978mg [Eutrema salsugineum]
            gi|557099302|gb|ESQ39666.1| hypothetical protein
            EUTSA_v10000978mg [Eutrema salsugineum]
          Length = 291

 Score =  283 bits (723), Expect = 2e-73
 Identities = 164/297 (55%), Positives = 201/297 (67%), Gaps = 4/297 (1%)
 Frame = -1

Query: 1219 MVALLQSASSCPVLPIS--CSGNGKALSSVPKPFSLGMTWHQKPLKK-GCMARHSVKGKA 1049
            M  L  S+S  P L  S   S +  + SS PKP +L    + KP K      R S     
Sbjct: 1    MGTLSLSSSLKPSLVSSRLSSSSSASSSSFPKPNNL----YLKPTKLVSAPLRTSPSPPR 56

Query: 1048 LMGDTMAV-QTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPK 872
                ++ + QT   A R AE DVMGLLLRERIV LG  IDDFVAD I+SQLLLLDA DPK
Sbjct: 57   FANASIEMSQTQEAAIRGAESDVMGLLLRERIVFLGSQIDDFVADAIMSQLLLLDAKDPK 116

Query: 871  KDIKLFVNSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPN 692
            KDIKLF+NS GGS++AT+ I+D +QL RADV TIALG AASTASIIL  G KGKR +MPN
Sbjct: 117  KDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMPN 176

Query: 691  ARIMMHQPFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAP 512
             RIM+HQP G A GQ  DVEIQAKEVMH K  V  I++  T R  +QV KDIDRD YM+P
Sbjct: 177  TRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMSP 236

Query: 511  MEAADYGLIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            +EA +YGLIDGVID D ++P+ P+P  +K R +Y+ +    D ++++TP+I DDEI+
Sbjct: 237  IEAVEYGLIDGVIDGDSIIPLEPVPDRVKSRVNYEEI--SKDPMKFLTPEIPDDEIY 291


>ref|XP_004146125.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Cucumis sativus]
          Length = 293

 Score =  282 bits (722), Expect = 2e-73
 Identities = 142/230 (61%), Positives = 178/230 (77%)
 Frame = -1

Query: 1030 AVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFV 851
            A QTP  A+R AE D MGLLLRERIV LG +IDDFVAD I+SQLLLLDA D  KDI+LF+
Sbjct: 66   APQTPDAARRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAKDSTKDIRLFI 125

Query: 850  NSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQ 671
            NS GGS+++T+ I+D +QL RADV TIALG AASTASIIL GG KGKRL+MPNARIM+HQ
Sbjct: 126  NSAGGSLSSTMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQ 185

Query: 670  PFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYG 491
            P G A G   DVEIQA+E+M  K  VIRI+SE TG   ++V+KDIDRD YM+P+EA +YG
Sbjct: 186  PLGGASGLALDVEIQAREIMQNKDNVIRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYG 245

Query: 490  LIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
             IDGVID+D ++P+ P+P  +K + +Y  +    D ++++TP + DDEIF
Sbjct: 246  FIDGVIDQDSIIPLMPVPDKVKGKFNYTEVMK--DPMKFLTPDVPDDEIF 293


>ref|XP_002282652.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic [Vitis vinifera]
          Length = 291

 Score =  282 bits (722), Expect = 2e-73
 Identities = 149/278 (53%), Positives = 193/278 (69%), Gaps = 10/278 (3%)
 Frame = -1

Query: 1144 SSVPKPFSLGMTWHQKPLKKGCMARHSVKGKALMGDTM----------AVQTPGFAQRSA 995
            +S PKP S  +    +PL    ++  S   KAL   T+            QTPG   R A
Sbjct: 21   TSFPKPSSFSL----RPLISASLSS-SPSLKALNTKTLDSVLALPLAHGSQTPGMGARGA 75

Query: 994  EGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNSHGGSINATLG 815
            E D MGLLL+ERIV LG  +DDFVAD I+SQLLLLDA DP KDI+LF+NS GGS++AT+ 
Sbjct: 76   EADAMGLLLKERIVFLGNNVDDFVADAIISQLLLLDAQDPTKDIRLFINSPGGSLSATMA 135

Query: 814  IFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPFGSAGGQVADV 635
            I+D +QL RADV T+ALG +ASTASIIL GG KGKR +MPN RIM+HQP G A GQ  DV
Sbjct: 136  IYDIVQLVRADVSTVALGISASTASIILGGGTKGKRFAMPNTRIMIHQPLGGASGQAIDV 195

Query: 634  EIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLIDGVIDKDFVL 455
            EIQA+E+MH K  V +I++  +GR  +QVEKDIDRD YM+P+EA +YG+ID VID+D ++
Sbjct: 196  EIQAQEIMHNKSNVTKIIAGFSGRSFEQVEKDIDRDRYMSPIEAVEYGIIDAVIDRDSII 255

Query: 454  PVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            P+ P+P  +K R +Y+ +    D  +++TP I DDEI+
Sbjct: 256  PLVPVPEKVKSRLNYEEI--SKDPRKFLTPDIPDDEIY 291


>ref|XP_006364458.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Solanum tuberosum]
          Length = 299

 Score =  281 bits (720), Expect = 4e-73
 Identities = 140/230 (60%), Positives = 174/230 (75%)
 Frame = -1

Query: 1030 AVQTPGFAQRSAEGDVMGLLLRERIVILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFV 851
            A Q+PG A R AEGD MGLLLRERI+ LG +IDDF AD I+SQLLLLDA D  KDI+LF+
Sbjct: 72   APQSPGMAMRGAEGDAMGLLLRERIIFLGSSIDDFFADAIISQLLLLDALDSTKDIRLFI 131

Query: 850  NSHGGSINATLGIFDAIQLCRADVQTIALGNAASTASIILAGGAKGKRLSMPNARIMMHQ 671
            N  GGS++AT+ IFD +QL RADV T+ALG +ASTASIILAGG KGKR +MPN RIM+HQ
Sbjct: 132  NCPGGSLSATMAIFDVVQLVRADVSTVALGISASTASIILAGGTKGKRYAMPNTRIMIHQ 191

Query: 670  PFGSAGGQVADVEIQAKEVMHQKQTVIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYG 491
            P G A GQ  DVEIQA+E+MH K  VI+I S  TGR  +QV+KDIDRD YM+P+EA ++G
Sbjct: 192  PLGGASGQAIDVEIQAREIMHNKDNVIKIFSNCTGRSYEQVQKDIDRDRYMSPIEAVEFG 251

Query: 490  LIDGVIDKDFVLPVTPIPSIIKRRDDYKMMPSGHDYIEYMTPKISDDEIF 341
            LIDGVID+D ++P+ P+P  +K     K      D ++++ P I DDEI+
Sbjct: 252  LIDGVIDRDSIIPLMPVPERVK--PTLKNQEMIQDPLKFLNPDIPDDEIY 299


>ref|XP_004245978.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 4,
            chloroplastic-like [Solanum lycopersicum]
          Length = 302

 Score =  281 bits (720), Expect = 4e-73
 Identities = 148/265 (55%), Positives = 186/265 (70%), Gaps = 2/265 (0%)
 Frame = -1

Query: 1129 PFSL--GMTWHQKPLKKGCMARHSVKGKALMGDTMAVQTPGFAQRSAEGDVMGLLLRERI 956
            P SL   +T HQ   K    +      K  +    A Q+PG A R AEGD MGLLLRERI
Sbjct: 40   PLSLKSSLTSHQSTSKPLSDSHLVADDKLSLLLASAPQSPGMAMRGAEGDAMGLLLRERI 99

Query: 955  VILGGTIDDFVADVIVSQLLLLDANDPKKDIKLFVNSHGGSINATLGIFDAIQLCRADVQ 776
            + LG +IDDF AD I+SQLLLLDA D  KDI+LF+N  GGS++AT+ IFD +QL RADV 
Sbjct: 100  IFLGSSIDDFFADAIISQLLLLDALDSTKDIRLFINCPGGSLSATMAIFDVVQLVRADVS 159

Query: 775  TIALGNAASTASIILAGGAKGKRLSMPNARIMMHQPFGSAGGQVADVEIQAKEVMHQKQT 596
            T+ALG +ASTASIILAGG KGKR +MPN RIM+HQP G A GQ  DVEIQA+E+MH K  
Sbjct: 160  TVALGISASTASIILAGGTKGKRYAMPNTRIMIHQPLGGASGQAIDVEIQAREIMHNKDN 219

Query: 595  VIRILSELTGRDPKQVEKDIDRDCYMAPMEAADYGLIDGVIDKDFVLPVTPIPSIIKRRD 416
            VI+I S  TGR  +QV+KDIDRD YM+P+EA ++GLIDGVID+D ++P+ P+P  +KR  
Sbjct: 220  VIKIFSNSTGRSYEQVQKDIDRDRYMSPIEALEFGLIDGVIDRDSIIPLMPVPEKVKR-- 277

Query: 415  DYKMMPSGHDYIEYMTPKISDDEIF 341
              +      D ++++ P I DDEI+
Sbjct: 278  TLRNQDLIQDPMKFLNPDIPDDEIY 302