BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00005214
         (1207 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   501   e-139
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   501   e-139
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...   499   e-139
gb|ABI34311.1| RNA dependent RNA polymerase family protein [Sola...   498   e-138
gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tu...   498   e-138
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...   498   e-138
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...   498   e-138
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   498   e-138
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   497   e-138
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       496   e-138
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   495   e-137
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   494   e-137
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   494   e-137
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   494   e-137
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   493   e-137
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   493   e-137
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   493   e-137
ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis...   493   e-137
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   492   e-136
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...   492   e-136

>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  501 bits (1291), Expect = e-139
 Identities = 248/403 (61%), Positives = 307/403 (76%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+S WMFA  + +TA +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   
Sbjct: 456  SSSQLRENSAWMFAPRDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 515

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVA 851
            E+E + D+     + RYVFSDGIGKISA  A +VA  CG T ++PSAFQIRYGGYKGVVA
Sbjct: 516  EIEVIPDVEAMYLDTRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVA 575

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM KF+S +T +DVL+W+K++PC+LNRQIITLLSTLGV+D  FEK Q
Sbjct: 576  VDPNSSKKLSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQ 635

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             EVV RLD +L +   A E L +M  GE+ +++ ++L CGY P+ EP+LSM+L  FRA+K
Sbjct: 636  REVVDRLDAILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASK 695

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+P GR +MGCLDE+ TLEYG+V VQ + P              +   + 
Sbjct: 696  LLELRTKTRIFIPGGRSMMGCLDETRTLEYGQVVVQYSNP-------------TMPGKRY 742

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            +ITG V+VAKNPCLHPGDV++LQ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+
Sbjct: 743  IITGPVVVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDI 802

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YFICWD  LIPP+   PM+Y   PA  LDHDVT+EE++E+FAN
Sbjct: 803  YFICWDHELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFAN 845


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  501 bits (1289), Expect = e-139
 Identities = 246/408 (60%), Positives = 308/408 (75%), Gaps = 6/408 (1%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S WMFAS   +TA  IR+WMGDF  IRNVAK AAR+GQSFSSS++TL+V   
Sbjct: 448  SSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKD 507

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC-TYTPSAFQIRYGGYKGVVA 851
            E+E++ DI +  G   YVFSDGIGKIS  LA  VA  CGC + TPSAFQIRYGGYKGVVA
Sbjct: 508  EIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVA 567

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM K++S +T +DVL+W+K++P FLNRQ+ITLLSTLGV+D  FEK Q
Sbjct: 568  VDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQ 627

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
               V +LD +L +   A E L++M  GE+ +V+ +ML CGY P+ EP+LSM+L  FRAAK
Sbjct: 628  RAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAK 687

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIFVP GR +MGCLDE+ TLEYGEVFVQ++     Q  G      + R +  
Sbjct: 688  LLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFG---DSLMFRGSGS 744

Query: 310  -----VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSD 146
                 ++ G+++VAKNPCLHPGDV++L  V+ P LHHMV+CVVFPQKG+RPHPNECSGSD
Sbjct: 745  HHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSD 804

Query: 145  LDGDLYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            LDGD+YF+CWD  LIPPQ  +PM+Y   P   LDHDV +EE++E+F N
Sbjct: 805  LDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTN 852


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score =  499 bits (1286), Expect = e-139
 Identities = 245/403 (60%), Positives = 310/403 (76%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+SLWMFA +  VTA++IR WMGDF SIRNVAK AAR+GQSF SS +TL V   
Sbjct: 442  SSSQLRENSLWMFAPSNGVTADDIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLTVQRD 501

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTY-TPSAFQIRYGGYKGVVA 851
            E   + DIT  +G++ Y FSDGIGKISA  A  VA+ C  T+  PSAFQIRYGG+KGVVA
Sbjct: 502  EYLLIPDITRQTGDKTYTFSDGIGKISADFARRVAAKCRFTHRVPSAFQIRYGGFKGVVA 561

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S  KLSLRPSMKK++S +T +DVLSW+K+ PCFLNRQIITLLSTLGVED+ F K Q
Sbjct: 562  VDPSSNMKLSLRPSMKKYESDNTKLDVLSWSKYLPCFLNRQIITLLSTLGVEDRVFLKKQ 621

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             E V++LD++L +   A EVL +M  GE+  ++ +ML+CGY P+ EP+LSM+L AFR++K
Sbjct: 622  REAVAQLDEILVDPLRAQEVLDLMAPGENSHILKEMLKCGYKPDEEPFLSMMLRAFRSSK 681

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LL+L+ K+RIFVPE R LMGCLDE+GTLEYGEVFVQ++  +  QF    P+   +     
Sbjct: 682  LLDLRTKSRIFVPEARQLMGCLDETGTLEYGEVFVQISGSRQRQFFFDGPAVGTVNDYNS 741

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            V++G V VAKNPCLHPGD+++++ VD P LHHMV+C+VFPQKG RP P+ECSGSDLDGD+
Sbjct: 742  VVSGTVFVAKNPCLHPGDIRVVKAVDVPILHHMVDCLVFPQKGHRPLPDECSGSDLDGDI 801

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YF+CWD  L P Q D PM+Y   P   LDHDVT++E+Q++F +
Sbjct: 802  YFVCWDTDLFPLQQDPPMDYDPAPTTRLDHDVTMQEVQKYFTD 844


>gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
          Length = 963

 Score =  498 bits (1283), Expect = e-138
 Identities = 239/404 (59%), Positives = 311/404 (76%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS++TL VL  
Sbjct: 296  SSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRH 355

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E+E + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAV
Sbjct: 356  EIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAV 413

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ+ITLLSTLGV+D   E+ Q+
Sbjct: 414  DPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQK 473

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 474  EAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 533

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N  
Sbjct: 534  LDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCN 593

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 594  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 653

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ +IPP+   PM Y   P++ LDHDVT+EE++E+F N
Sbjct: 654  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTN 697


>gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 935

 Score =  498 bits (1282), Expect = e-138
 Identities = 238/404 (58%), Positives = 312/404 (77%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR+WMGDF  I+NVAK AAR GQSF SSR+TL VL  
Sbjct: 448  SSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRH 507

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E+E + D+ V   +  YVFSDGIGKISA  A +VAS CG  YTPSAFQIRYGGYKGVVAV
Sbjct: 508  EIEVIPDVKVHGTS--YVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGGYKGVVAV 565

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D   E+ Q+
Sbjct: 566  DPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQK 625

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 626  EAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 685

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N  
Sbjct: 686  LDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCN 745

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 746  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ +IPP+    M +  PP++ LDHDVT+EE++E+F N
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTN 849


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score =  498 bits (1282), Expect = e-138
 Identities = 239/404 (59%), Positives = 311/404 (76%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS++TL VL  
Sbjct: 447  SSSQLRDNSVWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRH 506

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E+E + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAV
Sbjct: 507  EIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAV 564

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ+ITLLSTLGV+D   E+ Q+
Sbjct: 565  DPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQK 624

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 625  EAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 684

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N  
Sbjct: 685  LDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCN 744

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 745  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 804

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ +IPP+   PM Y   P++ LDHDVT+EE++E+F N
Sbjct: 805  IYFVCWDQDMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTN 848


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score =  498 bits (1282), Expect = e-138
 Identities = 238/404 (58%), Positives = 312/404 (77%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR+WMGDF  I+NVAK AAR GQSF SSR+TL VL  
Sbjct: 484  SSSQLRDNSVWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRH 543

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E+E + D+ V   +  YVFSDGIGKISA  A +VAS CG  YTPSAFQIRYGGYKGVVAV
Sbjct: 544  EIEVIPDVKVHGTS--YVFSDGIGKISADFARKVASNCGLQYTPSAFQIRYGGYKGVVAV 601

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D   E+ Q+
Sbjct: 602  DPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQK 661

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 662  EAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 721

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ K+RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N  
Sbjct: 722  LDLRTKSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCN 781

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 782  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 841

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ +IPP+    M +  PP++ LDHDVT+EE++E+F N
Sbjct: 842  IYFVCWDQDMIPPRQVQAMEFPPPPSIQLDHDVTIEEVEEYFTN 885


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  498 bits (1281), Expect = e-138
 Identities = 250/409 (61%), Positives = 307/409 (75%), Gaps = 7/409 (1%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S WMFAS   +TA +IR+ MGDF  IRNVAK AAR+GQSFSSS++TL+V   
Sbjct: 446  SSSQLRDNSAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKH 505

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGC-TYTPSAFQIRYGGYKGVVA 851
            E+E + DI        YVFSDGIGKISA LA  VA  CGC   TPSAFQIRYGGYKGVVA
Sbjct: 506  EIEIIPDIETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVA 565

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM K++S++T +DVLSW+K+RPCFLNRQ+ITLLSTLGV+D  FEK Q
Sbjct: 566  VDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQ 625

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             E V +LD +L +   A E L++M  GE+ +++ +ML CGY P+ EP+LSM+L  FRAAK
Sbjct: 626  REAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAK 685

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDG------GDPSQTI 329
            LLEL+ KTRIFVP GR +MGCLDE+ TLEYGEVFVQ++     Q  G      G  S   
Sbjct: 686  LLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGS--- 742

Query: 328  LRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGS 149
               +  ++ G+V+VAKNPCLHPGDV+IL  VD P LHHMV+CVVFPQKG RPHP+ECSGS
Sbjct: 743  -HHDNFILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGS 801

Query: 148  DLDGDLYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            DLDGD+YF+CWD  LIPP+  +PM+Y   P   LDHDV +EE++E+F N
Sbjct: 802  DLDGDIYFVCWDHDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTN 850


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  497 bits (1280), Expect = e-138
 Identities = 244/403 (60%), Positives = 307/403 (76%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+S WMFA  E +T+ +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   
Sbjct: 457  SSSQLRENSAWMFAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 516

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVA 851
            E+E + D+ + S   RYVFSDGIGKISA  A  VA  CG T ++PSAFQIRYGGYKGVVA
Sbjct: 517  EIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVA 576

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM KF+S++T +DVL+W+K++PC++NRQ+ITLLSTLGVED  FEK Q
Sbjct: 577  VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQ 636

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             EVV RLD +L +   A E L +M  GE+ +++  ++ CGY P+ EP+LSM+L  FRA+K
Sbjct: 637  REVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 696

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+  GR +MGCLDE+ TLEYG+V VQ ++P                  + 
Sbjct: 697  LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP-------------GRRF 743

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            +ITG V+VAKNPCLHPGDV++L+ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+
Sbjct: 744  IITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDI 803

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YF+CWD+ LIPP+   PM+Y   PA  LDHDVT+EE++E+FAN
Sbjct: 804  YFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFAN 846


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  496 bits (1278), Expect = e-138
 Identities = 239/410 (58%), Positives = 310/410 (75%), Gaps = 8/410 (1%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR WMGDF  IRNVAK AAR+GQSF SSR+TL V   
Sbjct: 141  SSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRNVAKYAARLGQSFGSSRETLSVGRH 200

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E++ + D+ V   N  YVFSDGIGKISA  A  VA  CG  +TPSAFQIRYGGYKGVVAV
Sbjct: 201  EIKYIPDVEVHGTN--YVFSDGIGKISADFAHRVAKKCGLQHTPSAFQIRYGGYKGVVAV 258

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S  KLSLR SM K++S +T +DVL W+K++PC+LNRQ++TL+STLGV+D+ F++ Q 
Sbjct: 259  DPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQN 318

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V++LD +L++   A E L +M  GE+ +++ +ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 319  EAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKL 378

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF--------DGGDPSQT 332
            L+L+ +TRIF+P+GR +MGCLDES TLEYG+VFVQ T     QF        D G  +  
Sbjct: 379  LDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHFNDSGSANYN 438

Query: 331  ILRSNKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSG 152
                   ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSG
Sbjct: 439  F------ILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSG 492

Query: 151  SDLDGDLYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            SDLDGD+YF+CWD  LIPP+   PM+Y   P++ LDHDVT+EE++E+F N
Sbjct: 493  SDLDGDIYFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTN 542


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  495 bits (1274), Expect = e-137
 Identities = 242/403 (60%), Positives = 306/403 (75%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+S WMFA  + +TA +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   
Sbjct: 456  SSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 515

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVA 851
            E+E + D+ + S   RYVFSDGIGKISA  A +VA  CG T ++PSAFQIRYGGYKGVVA
Sbjct: 516  EIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVA 575

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM KF+S++T +DVL+W+K++PC++NRQ+ITLLSTLGV D  FEK Q
Sbjct: 576  VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQ 635

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             EVV RLD +L +   A E L +M  GE+ +++  ++ CGY P+ EP+LSM+L  FRA+K
Sbjct: 636  REVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 695

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+  GR +MGCLDE+ TLEYG+V VQ ++P                  + 
Sbjct: 696  LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP-------------GRRF 742

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            +ITG V+VAKNPCLHPGDV++LQ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+
Sbjct: 743  IITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDI 802

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YF+CWD+ L+PP+   PM+Y   P   LDHDVT+EE++E+FAN
Sbjct: 803  YFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFAN 845


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
            gi|548853371|gb|ERN11375.1| hypothetical protein
            AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  494 bits (1273), Expect = e-137
 Identities = 247/406 (60%), Positives = 307/406 (75%), Gaps = 4/406 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S WMF+  + +TA NIR WMGDF  IRNVAKCAARMGQSF SS +TL V   
Sbjct: 533  SSSQLRDNSAWMFSPIDGITAANIRQWMGDFSGIRNVAKCAARMGQSFGSSTETLNVKPE 592

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTY-TPSAFQIRYGGYKGVVA 851
            EVE ++DI     N +YVFSDGIGKIS   A +VA  CGC+  TPSAFQIRYGGYKGVVA
Sbjct: 593  EVERISDIK----NGKYVFSDGIGKISLEFAKKVALKCGCSEKTPSAFQIRYGGYKGVVA 648

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S YKLSLR SM+K+ S +T +DVL+++KF+PCFLNRQ+ITLLSTLGV+D  FE  Q
Sbjct: 649  VDPTSRYKLSLRGSMRKYSSNNTKLDVLAYSKFQPCFLNRQVITLLSTLGVQDNVFETKQ 708

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
            ++ VS+LD++L + E+A E L++M  GE+ +V+ +ML CGY P+ EP+LSM+L  FR  K
Sbjct: 709  KDAVSQLDKILVDPESAFEALELMSPGENVNVLKEMLFCGYLPDSEPFLSMMLQTFRGLK 768

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQN---SQFDGGDPSQTILRS 320
            L ELK KTRIF+P GR +MGCLDE+G LEYG+VFVQ +   N    +F     +++    
Sbjct: 769  LSELKTKTRIFIPNGRSMMGCLDETGILEYGQVFVQFSAIGNRRLHEFGLSKINESGSDQ 828

Query: 319  NKKVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLD 140
              +V+ G+VIVAKNPCLHPGDV+IL  +D P LHHMVNCVVFPQKG+RPHPNECSGSDLD
Sbjct: 829  RVRVVVGKVIVAKNPCLHPGDVRILTAIDVPALHHMVNCVVFPQKGKRPHPNECSGSDLD 888

Query: 139  GDLYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            GD+YF+ WD  LIP    +PM Y   P   LDH+VT+EEI+E+F N
Sbjct: 889  GDIYFVSWDPMLIPCHQGTPMEYEPAPNNDLDHEVTIEEIEEYFTN 934


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  494 bits (1272), Expect = e-137
 Identities = 241/403 (59%), Positives = 307/403 (76%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+S WMFA  + +T+ +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   
Sbjct: 447  SSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 506

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVA 851
            E+E + D+ + S   RYVFSDGIGKISA  A  VA  CG T ++PSAFQIRYGGYKGVVA
Sbjct: 507  EIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVA 566

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM KF+S++T +DVL+W+K++PC++NRQ+ITLLSTLG++D  FEK Q
Sbjct: 567  VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQ 626

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             EVV RLD +L +   A E L +M  GE+ +++  ++ CGY P+ EP+LSM+L  FRA+K
Sbjct: 627  REVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 686

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+  GR +MGCLDE+ TLEYG+V VQ ++P                  + 
Sbjct: 687  LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP-------------GRRF 733

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            +ITG V+VAKNPCLHPGDV++L+ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+
Sbjct: 734  IITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDI 793

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YF+CWD+ LIPP+   PM+Y   PA  LDHDVT+EE++E+FAN
Sbjct: 794  YFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFAN 836


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score =  494 bits (1271), Expect = e-137
 Identities = 237/404 (58%), Positives = 310/404 (76%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR WMGDF  I+NVAK AAR+GQSF SS++TL VL  
Sbjct: 448  SSSQLRDNSVWMFASRPGLTAIDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRH 507

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E+E + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAV
Sbjct: 508  EIEIIPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAV 565

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PCFLNRQ++TLLSTLGV+D   E+ Q+
Sbjct: 566  DPYSSMKLSLRKSMSKYESDNNKLDVLEWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQK 625

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 626  EAVDQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 685

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N  
Sbjct: 686  LDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCN 745

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 746  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ +IPP+    M Y   P++ LDHDVT+EE++E+F N
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHDVTIEEVEEYFTN 849


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  493 bits (1270), Expect = e-137
 Identities = 236/404 (58%), Positives = 304/404 (75%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +TA +IR WMG F  IRNVAK AAR+GQSF SSR+TL V   
Sbjct: 449  SSSQLRDNSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRH 508

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            EVE + D+        Y+FSDGIGKISA  A  VA  CG  YTPS FQIRYGGYKGVVAV
Sbjct: 509  EVEVIPDVVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQYTPSCFQIRYGGYKGVVAV 568

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D  FE+ Q 
Sbjct: 569  DPYSSMKLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQN 628

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++ +ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 629  EAVDQLDAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKL 688

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T     QF +   P      +N  
Sbjct: 689  LDLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCD 748

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 749  FILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 808

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD  L+PP+   PM+Y   P+  LDHDVT+EE++E+F N
Sbjct: 809  IYFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTN 852


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  493 bits (1269), Expect = e-137
 Identities = 239/404 (59%), Positives = 309/404 (76%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRESS WMFAS   +TA  IR WMG+F  IRNVAK AAR+GQSFSSS++TL V   
Sbjct: 463  SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 522

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTP-SAFQIRYGGYKGVVA 851
            E+E + D+ +  G  +YVFSDGIGK+SA  A +VAS CG    P SAFQIRYGGYKGVVA
Sbjct: 523  EIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA 582

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
             DP S+ KLSLR SM+K++S+ T +DVL+W+K++PCFLNRQ+I+LLSTLG+ D+ FEK Q
Sbjct: 583  ADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 642

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             E V +LD +L +   A E L++M  GE+ +++ ++L CGY P+ EP+LSM+L  FRA+K
Sbjct: 643  REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASK 702

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+P GR +MGCLDE+ TL YG+VFVQ++     Q  G     +  RS ++
Sbjct: 703  LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 762

Query: 310  -VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGDV++L+ V+ P LHHMV+CVVFPQKG RPHPNECSGSDLDGD
Sbjct: 763  FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGD 822

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ LIPPQ D PM+Y    +M LDHDV +E+++E+F N
Sbjct: 823  IYFVCWDDELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTN 866


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  493 bits (1269), Expect = e-137
 Identities = 241/403 (59%), Positives = 307/403 (76%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+S WMFA  + +T+ +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   
Sbjct: 457  SSSQLRENSAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 516

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVA 851
            E+E + D+ + S   RYVFSDGIGKISA  A  VA  CG T ++PSAFQIRYGGYKGVVA
Sbjct: 517  EIEVIPDVEIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVA 576

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM KF+S++T +DVL+W+K++PC++NRQ+ITLLSTLGV+D  F+K Q
Sbjct: 577  VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQ 636

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             EVV RLD +L +   A E L +M  GE+ +++  ++ CGY P+ EP+LSM+L  FRA+K
Sbjct: 637  REVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 696

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+  GR +MGCLDE+ TLEYG+V VQ ++P                  + 
Sbjct: 697  LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP-------------GRRF 743

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            +ITG V+VAKNPCLHPGDV++L+ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+
Sbjct: 744  IITGPVVVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDI 803

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YF+CWD+ LIPP+   PM+Y   PA  LDHDVT+EE++E+FAN
Sbjct: 804  YFVCWDQELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFAN 846


>ref|NP_001267682.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase
            1b [Cucumis sativus]
          Length = 1115

 Score =  493 bits (1269), Expect = e-137
 Identities = 239/404 (59%), Positives = 307/404 (75%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE++ WMFA    +TA  IR WMGDF +IRNVAK AAR+GQSF SS +TL V   
Sbjct: 458  SSSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRR 517

Query: 1027 EVEDLNDITVGSGNE-RYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVA 851
            EV+ + DI V SG+   YVFSDGIGKI+AS A +VA  CG  +TPSAFQIRY G+KGV++
Sbjct: 518  EVKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVIS 577

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM K++S DT +DVLSW+K+ PCFLNRQ+ITLLSTLGV+D  FE  Q
Sbjct: 578  VDPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQ 637

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
            +E++  LD + ++   A + L++M  GE+  ++ +M+ CGY P+ EP+L M+LH FR +K
Sbjct: 638  QELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESK 697

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            L+EL++K+RIF+P GR +MGCLDE+  LEYGEVFVQ +  Q    D     +  ++SN+ 
Sbjct: 698  LMELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKR--IKSNRH 755

Query: 310  -VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++TG V+VAKNPCLHPGDV++L  VD P LHHM++CVVFPQKG RPHPNECSGSDLDGD
Sbjct: 756  FIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGD 815

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD  LIPPQ   PM+Y   P+  LDHDVT+EE+QE+FAN
Sbjct: 816  IYFVCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFAN 859


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  492 bits (1266), Expect = e-136
 Identities = 241/403 (59%), Positives = 305/403 (75%), Gaps = 1/403 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLRE+S WMFA  + +TA +IR WMGDF  IRNVAK AAR+GQSFSSSR+TL V   
Sbjct: 456  SSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 515

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCT-YTPSAFQIRYGGYKGVVA 851
            E+E + D+ + S   RYVFSDGIGKISA  A +VA  CG T ++PSAFQIRYGGYKGVVA
Sbjct: 516  EIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVA 575

Query: 850  VDPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQ 671
            VDP S+ KLSLR SM KF+S++T +DVL+W+K++PC++NRQ+ITLLSTLGV D  FEK Q
Sbjct: 576  VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQ 635

Query: 670  EEVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAK 491
             EVV RLD +L +   A E L +M  GE+ +++  ++ CGY P+ EP+LSM+L  FRA+K
Sbjct: 636  REVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 695

Query: 490  LLELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQFDGGDPSQTILRSNKK 311
            LLEL+ KTRIF+  GR +MGCLDE+ TLEYG+V VQ ++P                  + 
Sbjct: 696  LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPMRP-------------GRRF 742

Query: 310  VITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGDL 131
            +ITG V+VAKNPCLH GDV++LQ V+ P L+HMV+CVVFPQKG RPHPNECSGSDLDGD+
Sbjct: 743  IITGPVVVAKNPCLHSGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDI 802

Query: 130  YFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            YF+CWD+ L+PP+   PM+Y   P   LDHDVT+EE++E+FAN
Sbjct: 803  YFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFAN 845


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score =  492 bits (1266), Expect = e-136
 Identities = 235/404 (58%), Positives = 310/404 (76%), Gaps = 2/404 (0%)
 Frame = -1

Query: 1207 SNSQLRESSLWMFASNENVTAENIRNWMGDFMSIRNVAKCAARMGQSFSSSRKTLRVLDT 1028
            S+SQLR++S+WMFAS   +T  +IR+WMGDF  I+NVAK AAR+GQSF SSR+TL VL  
Sbjct: 448  SSSQLRDNSVWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRH 507

Query: 1027 EVEDLNDITVGSGNERYVFSDGIGKISASLAAEVASICGCTYTPSAFQIRYGGYKGVVAV 848
            E+E + D+ V   +  YVFSDGIGKISA  A  VAS CG  YTPSAFQIRYGGYKGVVAV
Sbjct: 508  EIEVIPDVKVHGTS--YVFSDGIGKISADFARRVASKCGLQYTPSAFQIRYGGYKGVVAV 565

Query: 847  DPFSTYKLSLRPSMKKFDSKDTFVDVLSWTKFRPCFLNRQIITLLSTLGVEDQAFEKLQE 668
            DP+S+ KLSLR SM K++S +  +DVL W+K++PC+LNRQ++TLLSTLGV+D   E+ Q+
Sbjct: 566  DPYSSMKLSLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQK 625

Query: 667  EVVSRLDQVLNNKETALEVLQIMGGGEHHDVIVKMLQCGYSPEHEPYLSMILHAFRAAKL 488
            E V +LD +L++   A E L++M  GE+ +++  ML CGY P+ EP+LSM+L  FRA+KL
Sbjct: 626  EAVHQLDAILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKL 685

Query: 487  LELKVKTRIFVPEGRCLMGCLDESGTLEYGEVFVQVTEPQNSQF-DGGDPSQTILRSN-K 314
            L+L+ ++RIF+P GR +MGCLDES TLEYG+VFVQ T   + +F +   P      +N  
Sbjct: 686  LDLRTRSRIFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCN 745

Query: 313  KVITGRVIVAKNPCLHPGDVQILQTVDFPWLHHMVNCVVFPQKGERPHPNECSGSDLDGD 134
             ++ G V+VAKNPCLHPGD+++L+ VD P LHHMV+CVVFPQKG+RPHPNECSGSDLDGD
Sbjct: 746  FILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD 805

Query: 133  LYFICWDESLIPPQVDSPMNYFAPPAMALDHDVTVEEIQEFFAN 2
            +YF+CWD+ +IPP+    M Y   P++ LDH+VT+EE++E+F N
Sbjct: 806  IYFVCWDQDMIPPRQVQAMEYPPAPSIQLDHNVTIEEVEEYFTN 849