BLASTX nr result
ID: Ephedra27_contig00005176
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00005176
(697 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. m... 81 4e-13
ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgari... 81 4e-13
dbj|BAD66809.1| ribosomal protein S4 [Beta vulgaris subsp. vulga... 77 4e-12
gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Am... 75 2e-11
gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella t... 75 2e-11
ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ... 74 6e-11
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet... 73 1e-10
dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [N... 72 1e-10
ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclep... 71 4e-10
ref|XP_006371732.1| hypothetical protein POPTR_0018s01380g, part... 70 8e-10
ref|XP_002333103.1| predicted protein [Populus trichocarpa] 70 8e-10
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ... 70 8e-10
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911... 68 2e-09
gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana] 68 2e-09
ref|YP_008964100.1| truncated ribosomal protein S4 (mitochondrio... 67 4e-09
ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259... 67 7e-09
ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209... 64 4e-08
emb|CBI33207.3| unnamed protein product [Vitis vinifera] 64 4e-08
ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus] gi|... 64 5e-08
ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum] 63 8e-08
>ref|YP_004222288.1| ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|317905723|emb|CBJ14108.1| ribosomal protein S4 [Beta
vulgaris subsp. maritima] gi|319439803|emb|CBJ17515.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
Length = 315
Score = 80.9 bits (198), Expect = 4e-13
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Frame = -1
Query: 532 TGSQVS*FI*NITITATS*KXFHKRTNMYS----LLNLETRLDIILLRIHFCSTIPQARQ 365
T ++S F N+ IT H+RT S LLNLETRLD+IL+R+HFC TIPQARQ
Sbjct: 57 TTRKLSLFYGNLPITK-----MHRRTKRTSYIPFLLNLETRLDVILVRLHFCETIPQARQ 111
Query: 364 MVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYYHETAEVMRR------NVWKAIGSLK 209
++SH+K+ VNN IV + ++S GD I+ E Y E +R+ V K IG L+
Sbjct: 112 LISHRKVCVNNGIVNISHFKVSHGDIISFQENYARTRGEEIRKFFYIKILVEKIIGKLR 170
>ref|NP_064046.2| rps4 gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
gi|346683270|ref|YP_004842202.1| ribosomal protein S4
[Beta macrocarpa] gi|87248052|gb|ABD36080.1| ribosomal
protein S4 [Beta vulgaris subsp. vulgaris]
gi|148491424|dbj|BAA99356.2| ribosomal protein S4 [Beta
vulgaris subsp. vulgaris] gi|320148708|emb|CBJ23346.1|
ribosomal protein S4 [Beta vulgaris subsp. maritima]
gi|345500188|emb|CBX25007.1| ribosomal protein S4 [Beta
macrocarpa] gi|384939188|emb|CBL52035.1| ribosoma
lprotein S4 (mitochondrion) [Beta vulgaris subsp.
maritima]
Length = 315
Score = 80.9 bits (198), Expect = 4e-13
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 11/119 (9%)
Frame = -1
Query: 532 TGSQVS*FI*NITITATS*KXFHKRTNMYS----LLNLETRLDIILLRIHFCSTIPQARQ 365
T ++S F N+ IT H+RT S LLNLETRLD+IL+R+HFC TIPQARQ
Sbjct: 57 TTRKLSLFYGNLPITK-----MHRRTKRTSYIPFLLNLETRLDVILVRLHFCETIPQARQ 111
Query: 364 MVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYYHETAEVMRR------NVWKAIGSLK 209
++SH+K+ VNN IV + ++S GD I+ E Y E +R+ V K IG L+
Sbjct: 112 LISHRKVCVNNGIVNISHFKVSHGDIISFQENYARTRGEEIRKFFYIKILVEKIIGKLR 170
>dbj|BAD66809.1| ribosomal protein S4 [Beta vulgaris subsp. vulgaris]
Length = 315
Score = 77.4 bits (189), Expect = 4e-12
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Frame = -1
Query: 532 TGSQVS*FI*NITITATS*KXFHKRTNMYS----LLNLETRLDIILLRIHFCSTIPQARQ 365
T ++S F N+ IT H+RT S LLN ETRLD+IL+R+HFC TIPQARQ
Sbjct: 57 TTRKLSLFHGNLPITK-----MHRRTKRTSYIPFLLNPETRLDVILVRLHFCETIPQARQ 111
Query: 364 MVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYYHETAEVMRR------NVWKAIGSLK 209
+SH+K+ VNN IV + ++S GD I+ E Y E +R+ +V K IG L+
Sbjct: 112 PISHRKVCVNNGIVNISHFKVSHGDIISFQENYARTRGEEIRKFFYIKISVEKIIGKLR 170
>gb|AHC94278.1| ribosomal protein S4, partial (mitochondrion) [Amborella
trichopoda]
Length = 324
Score = 75.1 bits (183), Expect = 2e-11
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLETRLD+IL+R+HFC T+PQARQ++SH+++ VNN +V R ++S GD I+ E Y
Sbjct: 86 LLNLETRLDVILVRLHFCETLPQARQLISHRRLCVNNGMVSITRLKVSHGDLISLKENYA 145
Query: 265 HETAEVMRR 239
E RR
Sbjct: 146 RTRGEERRR 154
>gb|AHA47128.1| ribosomal protein S4 (mitochondrion) [Amborella trichopoda]
Length = 354
Score = 75.1 bits (183), Expect = 2e-11
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLETRLD+IL+R+HFC T+PQARQ++SH+++ VNN +V R ++S GD I+ E Y
Sbjct: 86 LLNLETRLDVILVRLHFCETLPQARQLISHRRLCVNNGMVSITRLKVSHGDLISLKENYA 145
Query: 265 HETAEVMRR 239
E RR
Sbjct: 146 RTRGEERRR 154
>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
gi|357197350|gb|AET62946.1| ribosomal protein S4
(mitochondrion) [Lotus japonicus]
Length = 358
Score = 73.6 bits (179), Expect = 6e-11
Identities = 37/72 (51%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLETRLD+IL+R+HFC TIPQARQ++SH+++ VNN +V R ++S GD I+ E
Sbjct: 95 LLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDA 154
Query: 265 HETAEVMRRNVW 230
E +RR+ +
Sbjct: 155 RIRGEEIRRSFY 166
>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
gi|372450274|ref|YP_005090457.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197313|gb|AET62910.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
gi|357197320|gb|AET62917.1| ribosomal protein S4
(mitochondrion) [Millettia pinnata]
Length = 358
Score = 72.8 bits (177), Expect = 1e-10
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLETRLD+IL+R+HFC TIPQARQ++SH+++ VNN +V R ++S GD I+ E
Sbjct: 95 LLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITRLKVSHGDLISFQENDA 154
Query: 265 HETAEVMRR 239
E +RR
Sbjct: 155 RIRGEEIRR 163
>dbj|BAD83538.2| ribosomal protein S4, partial (mitochondrion) [Nicotiana tabacum]
Length = 349
Score = 72.4 bits (176), Expect = 1e-10
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLETRLD+IL+R+HFC TIPQARQ++SH+++ VNN +V +LS GD I+ E
Sbjct: 90 LLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNGMVNITHFKLSHGDIISFQENDV 149
Query: 265 HETAEVMRRNVW 230
E ++R+ +
Sbjct: 150 RTRGEEIKRSFY 161
>ref|YP_008802509.1| ribosomal protein S4 (mitochondrion) [Asclepias syriaca]
gi|556562347|gb|AGZ63043.1| ribosomal protein S4
(mitochondrion) [Asclepias syriaca]
Length = 274
Score = 70.9 bits (172), Expect = 4e-10
Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Frame = -1
Query: 466 HKRTNMYS----LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLS 302
H+RT S LLNLETRLD+IL+R+HFC TIPQARQ++SH+++ VNN +V ++S
Sbjct: 2 HRRTERTSYIPFLLNLETRLDVILVRLHFCETIPQARQLISHRRVCVNNGMVSITHFKVS 61
Query: 301 CGDFIAPAEKYYHETAEVMR 242
GD I+ E T E+ R
Sbjct: 62 HGDLISFQEN-VARTQEIRR 80
>ref|XP_006371732.1| hypothetical protein POPTR_0018s01380g, partial [Populus
trichocarpa] gi|550317785|gb|ERP49529.1| hypothetical
protein POPTR_0018s01380g, partial [Populus trichocarpa]
Length = 148
Score = 69.7 bits (169), Expect = 8e-10
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 12/97 (12%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLE RLD+IL+R+HFC TIPQARQ++SH+++ VNN +V ++S GD I+ E
Sbjct: 23 LLNLERRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITHLKVSHGDIISFQENDA 82
Query: 265 HETAEVMRRNVW------KAIGS-----LKRVTRKVW 188
E +RR+ + K IG ++R T+ W
Sbjct: 83 RIRGEEIRRSFYIEKLVDKIIGKFLDHPVRRRTKTEW 119
>ref|XP_002333103.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 69.7 bits (169), Expect = 8e-10
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 12/97 (12%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLE RLD+IL+R+HFC TIPQARQ++SH+++ VNN +V ++S GD I+ E
Sbjct: 45 LLNLERRLDVILVRLHFCETIPQARQLISHRRVCVNNRMVSITHLKVSHGDIISFQENDA 104
Query: 265 HETAEVMRRNVW------KAIGS-----LKRVTRKVW 188
E +RR+ + K IG ++R T+ W
Sbjct: 105 RIRGEEIRRSFYIEILVDKIIGKFLDHPVRRRTKTEW 141
>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
sativa Japonica Group]
Length = 352
Score = 69.7 bits (169), Expect = 8e-10
Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 7/92 (7%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLN ETRLD+IL+R+HFC T+PQARQ++SH+++ +NN +V ++S GD I+ E
Sbjct: 86 LLNQETRLDVILVRLHFCDTLPQARQLISHRRVCLNNGLVTITHLKVSHGDLISFQENDA 145
Query: 265 HETAEVMRRN------VWKAIGSLKRVTRKVW 188
E +RR+ V K IG L V ++W
Sbjct: 146 RTRGEEIRRSFYIDILVGKIIGKLLPV--RIW 175
>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
ribosomal protein S4 [Brassica napus]
Length = 362
Score = 68.2 bits (165), Expect = 2e-09
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = -1
Query: 463 KRTNMYS-LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDF 290
KRT+ LLNLETR D+ILLR+HF TIPQARQ++SH+++ VN +V +LS GD
Sbjct: 92 KRTSYIPFLLNLETRFDVILLRLHFLETIPQARQLISHRRVCVNKGMVSITHLKLSHGDI 151
Query: 289 IAPAEKYYHETAEVMRRNVWKAI 221
I+ E E +RR+ +K I
Sbjct: 152 ISFQENNAIIRGEEIRRSFYKEI 174
>gb|ACH78250.1| ribosomal protein S4 [Arabidopsis thaliana]
Length = 362
Score = 68.2 bits (165), Expect = 2e-09
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Frame = -1
Query: 463 KRTNMYS-LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDF 290
KRT+ LLNLETR D+ILLR+HF TIPQARQ++SH+++ VN +V +LS GD
Sbjct: 92 KRTSYIPFLLNLETRFDVILLRLHFLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDI 151
Query: 289 IAPAEKYYHETAEVMRRNVWKAI 221
I+ E E +RR+ +K I
Sbjct: 152 ISFQENNAIIRGEEIRRSFYKEI 174
>ref|YP_008964100.1| truncated ribosomal protein S4 (mitochondrion) [Ajuga reptans]
gi|558697232|gb|AHA84986.1| truncated ribosomal protein
S4 (mitochondrion) [Ajuga reptans]
Length = 224
Score = 67.4 bits (163), Expect = 4e-09
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
Frame = -1
Query: 532 TGSQVS*FI*NITITATS*KXFHKRTNMYSLLNLETRLDIILLRIHFCSTIPQARQMVSH 353
T ++S F ++++T T + + + LLNLE RLD+ L+RI FC T+PQARQ++SH
Sbjct: 53 TTRKLSLFYGDLSVTRTDRRIYF----IPFLLNLERRLDVTLVRIRFCQTLPQARQLISH 108
Query: 352 QKIRVNNEIV-RARSRLSCGDFIAPAEKYYHETAEVMRRNVW------KAIGSLKRVTRK 194
++ VN+++V R R ++S GD I+ E T E +RR+++ K IG +
Sbjct: 109 GRVCVNHQVVNRIRWKVSPGDLISWKENDV-RTHEKIRRSLYVRFLVDKVIGGSLHRPIR 167
Query: 193 VW 188
VW
Sbjct: 168 VW 169
>ref|YP_003587372.1| ribosomal protein S4 [Cucurbita pepo] gi|259156835|gb|ACV96696.1|
ribosomal protein S4 [Cucurbita pepo]
Length = 356
Score = 66.6 bits (161), Expect = 7e-09
Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = -1
Query: 463 KRTNMYS-LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDF 290
+RTN LLNLETRLD+IL+R+HF ST+PQARQ++SH+++ VN +V ++S GD
Sbjct: 85 ERTNYIPFLLNLETRLDVILVRLHFSSTLPQARQLISHRRVCVNKGMVPITHFKVSHGDL 144
Query: 289 IAPAEKYYHETAEVMRRNVWKAIGSLKRVTRK 194
I+ E E +RR+ + I S++++ K
Sbjct: 145 ISLKENDARIRGEEIRRSFYIEI-SVEKIIGK 175
>ref|YP_002608399.1| ribosomal protein S4 [Vitis vinifera] gi|209954196|emb|CAQ77661.1|
ribosomal protein S4 [Vitis vinifera]
gi|239764730|gb|ACS15201.1| ribosomal protein S4 [Vitis
vinifera]
Length = 362
Score = 64.3 bits (155), Expect = 4e-08
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Frame = -1
Query: 454 NMYSL--LNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIA 284
N Y L LNLETR D+I +R+HFC TIPQARQ +SH+++ VNN +V ++S GD I+
Sbjct: 94 NSYILFPLNLETRSDVIPVRLHFCETIPQARQPISHRRVCVNNRMVSITHLKVSHGDIIS 153
Query: 283 PAEKYYHETAEVMRRNVWKAIGSLKRVTRK 194
E E +RR+ + I S++++ K
Sbjct: 154 FQENDARIRGEEIRRSFYIEI-SVEKIIGK 182
>emb|CBI33207.3| unnamed protein product [Vitis vinifera]
Length = 327
Score = 64.3 bits (155), Expect = 4e-08
Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 3/90 (3%)
Frame = -1
Query: 454 NMYSL--LNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIA 284
N Y L LNLETR D+I +R+HFC TIPQARQ +SH+++ VNN +V ++S GD I+
Sbjct: 94 NSYILFPLNLETRSDVIPVRLHFCETIPQARQPISHRRVCVNNRMVSITHLKVSHGDIIS 153
Query: 283 PAEKYYHETAEVMRRNVWKAIGSLKRVTRK 194
E E +RR+ + I S++++ K
Sbjct: 154 FQENDARIRGEEIRRSFYIEI-SVEKIIGK 182
>ref|YP_003587235.1| ribosomal protein S4 [Citrullus lanatus]
gi|259156791|gb|ACV96653.1| ribosomal protein S4
[Citrullus lanatus]
Length = 355
Score = 63.9 bits (154), Expect = 5e-08
Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLNLETRLD+IL+R+HF TIPQARQ++SH+++ VN +V ++S GD I+ E
Sbjct: 93 LLNLETRLDVILVRLHFSETIPQARQLISHRRVCVNKGMVSITHFKVSHGDLISFQENDA 152
Query: 265 HETAEVMRR 239
E +RR
Sbjct: 153 RIRGEEIRR 161
>ref|YP_173472.1| ribosomal protein S4 [Nicotiana tabacum]
Length = 349
Score = 63.2 bits (152), Expect = 8e-08
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = -1
Query: 442 LLNLETRLDIILLRIHFCSTIPQARQMVSHQKIRVNNEIVR-ARSRLSCGDFIAPAEKYY 266
LLN ETR D+I +R+HFC TIPQARQ +SH+++ VNN +V +LS GD I+ E
Sbjct: 90 LLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNGMVNITHFKLSHGDIISFQENDA 149
Query: 265 HETAEVMRRNVWKAIGSLKRVTRK 194
E ++R+ + I S++++ K
Sbjct: 150 RTRGEEIKRSFYIEI-SVEKIIGK 172