BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00004941
         (2709 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX19931.1| viral replicase [Nandina mosaic virus]                1528   0.0  
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1521   0.0  
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1520   0.0  
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1518   0.0  
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1517   0.0  
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1515   0.0  
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1514   0.0  
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ...  1511   0.0  
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1...  1432   0.0  
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi...  1227   0.0  
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a...  1053   0.0  
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo...   492   e-136
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a...   466   e-128
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]             453   e-124
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5...   453   e-124
ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P2...   449   e-123
gb|ACS28228.1| replicase [Alternanthera mosaic virus]                 439   e-120
gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosai...   438   e-120
gb|ACS28233.1| replicase [Alternanthera mosaic virus]                 437   e-120
ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082...   436   e-119

>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
          Length = 1368

 Score = 1528 bits (3956), Expect = 0.0
 Identities = 756/902 (83%), Positives = 802/902 (88%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYRTLKRELAQTRH+NPFAQ+P+AADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSPDAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            TV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL APNQPT+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTT+ YVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSGNL+QRLLRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSGNLLQRLLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            +D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +PFT+P PVNPD
Sbjct: 372  ADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLSPFTRPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T  +FREF          T+ + LE S E+  +HTSLKV    LS EQL ALHELGN
Sbjct: 432  DAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSPEQLSALHELGN 491

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
            +R GGP+LPK                    T  S+ L +  H    P        P  + 
Sbjct: 492  SRCGGPMLPK---------------RSSNHTHTSSDLLRRRH----PRQQRSTNPPMGSL 532

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
              K   +GFEALEIQTDPSTG+ IMPI D R+LP+A +P HW+ P   K++ TLR LNRF
Sbjct: 533  AAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEKIIATLRNLNRF 592

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N   + AISVIHGAGGS
Sbjct: 593  PTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHTAISVIHGAGGS 652

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQNP+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S+ PVVIF
Sbjct: 653  GKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSRGPVVIF 712

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+PATT FSELSRY
Sbjct: 713  DDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSPATTTFSELSRY 772

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 773  YINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 832

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSSAFWEKLEATPY
Sbjct: 833  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSSAFWEKLEATPY 892

Query: 7    LK 2
            LK
Sbjct: 893  LK 894


>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1521 bits (3937), Expect = 0.0
 Identities = 755/902 (83%), Positives = 796/902 (88%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F           +  +L   +E    H SL +  + L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATAT-----VEXTLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
             R GGPLLPK                   P       ++   + + P   DP+TLPWVAW
Sbjct: 487  ARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAW 544

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGLNR+
Sbjct: 545  LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRY 604

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGS
Sbjct: 605  PTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGS 664

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIF
Sbjct: 665  GKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIF 724

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725  DDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 785  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 844

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904

Query: 7    LK 2
            LK
Sbjct: 905  LK 906


>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1520 bits (3936), Expect = 0.0
 Identities = 755/902 (83%), Positives = 796/902 (88%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F           +  +L   +E    H SL +  + L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
             R GGPLLPK                   P       ++   + + P   DP+TLPWVAW
Sbjct: 487  ARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAW 544

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGLNR+
Sbjct: 545  LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRY 604

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGS
Sbjct: 605  PTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGS 664

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIF
Sbjct: 665  GKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIF 724

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725  DDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 785  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 844

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904

Query: 7    LK 2
            LK
Sbjct: 905  LK 906


>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1518 bits (3930), Expect = 0.0
 Identities = 754/902 (83%), Positives = 795/902 (88%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F           +  +L   +E    H SL +  + L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCSTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
             R G PLLPK                   P       ++   + + P   DP+TLPWVAW
Sbjct: 487  ARCGAPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAW 544

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLRGLNR+
Sbjct: 545  LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRGLNRY 604

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGS
Sbjct: 605  PTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGS 664

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIF
Sbjct: 665  GKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIF 724

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725  DDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 785  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 844

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904

Query: 7    LK 2
            LK
Sbjct: 905  LK 906


>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1517 bits (3928), Expect = 0.0
 Identities = 754/902 (83%), Positives = 794/902 (88%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F           +  +L   +E    H SL +    L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
             R GGPLLPK                   P       ++   + + P   DP+TLPWVAW
Sbjct: 487  ARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAW 544

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLR LNR+
Sbjct: 545  LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRY 604

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGS
Sbjct: 605  PTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGS 664

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIF
Sbjct: 665  GKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIF 724

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725  DDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 785  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 844

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904

Query: 7    LK 2
            LK
Sbjct: 905  LK 906


>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1515 bits (3922), Expect = 0.0
 Identities = 753/902 (83%), Positives = 793/902 (87%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F           +  +L   +E    H SL +    L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
             R GGPLLPK                   P       ++   + + P   DP+TLPWVAW
Sbjct: 487  ARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAW 544

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++L+TLR LNR+
Sbjct: 545  LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMERILSTLRSLNRY 604

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLTEN   NLAISVIHGAGGS
Sbjct: 605  PTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNLAISVIHGAGGS 664

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIF
Sbjct: 665  GKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIF 724

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725  DDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 785  YINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVST 844

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904

Query: 7    LK 2
            LK
Sbjct: 905  LK 906


>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1514 bits (3919), Expect = 0.0
 Identities = 754/907 (83%), Positives = 793/907 (87%), Gaps = 5/907 (0%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPD+FLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL+
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLK 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F              +LE  AE    H SL +    L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLN-----QGDHTDEAPVNSDPATL 1103
            TR GGPLLPK                      A  S N     +   T + P   DP TL
Sbjct: 487  TRCGGPLLPK-------GPAKLTTVEPCPDLPAENSANPEPPRKTTQTLDLPHPEDPTTL 539

Query: 1102 PWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLR 923
            PWVAWLPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P + ++++TLR
Sbjct: 540  PWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGPDMERIISTLR 599

Query: 922  GLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIH 743
              NR+PTPW PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML EN   NLAISVIH
Sbjct: 600  SFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENSQTNLAISVIH 659

Query: 742  GAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKS 563
            GAGGSGKSQALQTLLRQ P LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ 
Sbjct: 660  GAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRC 719

Query: 562  PVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFS 383
            PVVIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALISKL PAT IFS
Sbjct: 720  PVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFS 779

Query: 382  ELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAG 203
            ELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPG+HLLVPSL+KKAAFTDAG
Sbjct: 780  ELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAG 839

Query: 202  HKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKL 23
            HKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKL
Sbjct: 840  HKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKL 899

Query: 22   EATPYLK 2
            EATPYLK
Sbjct: 900  EATPYLK 906


>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
          Length = 1380

 Score = 1511 bits (3913), Expect = 0.0
 Identities = 751/902 (83%), Positives = 793/902 (87%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQD
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP
Sbjct: 132  TIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT P Q T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPLR
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRMLRPLR 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +PF +P PVNPD
Sbjct: 372  SGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDSPFARPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T ++F+ F           +  +L   +E    H SL +    L   QL ALHELGN
Sbjct: 432  DAETTQSFQAFCQATAT-----VEATLAQQSETPDEHQSLSLKCPTLPEHQLWALHELGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
             R GGPLLPK                   P       ++   + + P   DP+TLPWVAW
Sbjct: 487  ARCGGPLLPK--GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSDLPHPQDPSTLPWVAW 544

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALEIQTDPSTGE+IMPI D R+LP+A    HW  P ++++L+TLR LNR+
Sbjct: 545  LPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMARILSTLRSLNRY 604

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLTEN   NLAISVIHGAGGS
Sbjct: 605  PTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNLAISVIHGAGGS 664

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ P LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERAFVCS+ PVVIF
Sbjct: 665  GKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERAFVCSRCPVVIF 724

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL PAT IFSELSRY
Sbjct: 725  DDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPPATAIFSELSRY 784

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PG+HLLVPSL+KKAAFTDAGHKVST
Sbjct: 785  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKAAFTDAGHKVST 844

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY
Sbjct: 845  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 904

Query: 7    LK 2
            LK
Sbjct: 905  LK 906


>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
            gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
            replication protein; AltName: Full=156 kDa protein;
            AltName: Full=ORF1 protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
            [Plantago asiatica mosaic virus]
          Length = 1385

 Score = 1432 bits (3707), Expect = 0.0
 Identities = 715/902 (79%), Positives = 769/902 (85%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHPYAIT HTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHPYAITSHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHVEPKDVPRYPQ+
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHVEPKDVPRYPQE 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPPE     RSLYP
Sbjct: 132  TIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPPEPSTS-RSLYP 190

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAP  PT+TAQRLETKGANHL
Sbjct: 191  QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTAQRLETKGANHL 250

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMFFYIKS KEA+ 
Sbjct: 251  FIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMFFYIKSGKEAQR 310

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
                 + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV    L  +      
Sbjct: 311  EGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PPKLAPKTTPAPP 369

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
              I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF NPFT+P PVNP+
Sbjct: 370  LGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKNPFTQPQPVNPE 429

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DAD    F++F          T+   LE SAE+   HT LKV  + LS  QL A+H LG+
Sbjct: 430  DADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSEGQLEAIHALGH 489

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPWVAW 1088
            +R GGPLLP++T                  +QAS + +     D  P   +P TLPWVAW
Sbjct: 490  SRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTAQNPETLPWVAW 549

Query: 1087 LPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNRF 908
            LPKLNALGFEALE+Q DPSTGE+IMPI D ++LP+ATLP HW    L ++L+TLR LNRF
Sbjct: 550  LPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLERILSTLRSLNRF 609

Query: 907  PTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGGS 728
            PTPW PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLTEN    LAISVIHGAGGS
Sbjct: 610  PTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTELAISVIHGAGGS 669

Query: 727  GKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIF 548
            GKSQALQTLLRQ+  LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFV S SPVVIF
Sbjct: 670  GKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVSSHSPVVIF 729

Query: 547  DDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRY 368
            DDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL PATTI+S  SRY
Sbjct: 730  DDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPPATTIYSAFSRY 789

Query: 367  YINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVST 188
            YINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PG+HLLVPSLMKKAAFTDAGHKVS+
Sbjct: 790  YINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKAAFTDAGHKVSS 849

Query: 187  YAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPY 8
            YAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSSAFWEKLEATPY
Sbjct: 850  YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSSAFWEKLEATPY 909

Query: 7    LK 2
            LK
Sbjct: 910  LK 911


>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
            gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
            [Tulip virus X]
          Length = 1361

 Score = 1227 bits (3175), Expect = 0.0
 Identities = 616/906 (67%), Positives = 702/906 (77%), Gaps = 4/906 (0%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR +K+EL  TRHSNPFAQ+P AAD LE LGINSHP AITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRVMKKELTATRHSNPFAQSPAAADTLELLGINSHPLAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEV SHYLPKENPV+FLFMKP+KLR+FHRGP H D FLNA++EPKDVPRYP D
Sbjct: 72   KAIESDLYEVTSHYLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAYIEPKDVPRYPTD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            TVI  +  I T +AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLPPEALYRLRSLYP
Sbjct: 132  TVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLPPEALYRLRSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            ++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L +    T+TAQRLETKGANHL
Sbjct: 192  EVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLIS-ESTTVTAQRLETKGANHL 250

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRG YLTPERRTFTT   YVTVP+IFLP   N RTPI+KT+ MQ+FFYIKSVKE +E
Sbjct: 251  FIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIFFYIKSVKECRE 310

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG+L+ RLLRP R
Sbjct: 311  RDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSGSLLTRLLRPAR 370

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
             + Q +++FF+G P   KLIKAL WQP+ LEF V TV    R PPGF +P  +P PVN  
Sbjct: 371  VNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRHPLCRPLPVNEV 430

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA T  A                            ++ SL +   +LS +QL ALH LG+
Sbjct: 431  DALTTAA---------------------------CANQSLPLD--NLSEDQLEALHVLGS 461

Query: 1267 TRLGG---PLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQGDHTDEAPVNSDPATLPW 1097
             R  G   P  PK                    T  + ++    +        DP TLPW
Sbjct: 462  LRTDGESLPSPPKAPLETGPHPTPTISAAGPTKTVPTPNVEVSANPLTGTPLPDPDTLPW 521

Query: 1096 VAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPG-LSKVLTTLRG 920
             AWLP L ALGFEA EIQTDP     IMPI D++ LP  T  E+ +      KV+ TL+ 
Sbjct: 522  KAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDEYDSTSSPFDKVVITLKQ 581

Query: 919  LNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHG 740
            LNR PTPW PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT LTE     L +SVIHG
Sbjct: 582  LNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQTRLTETSETRLGLSVIHG 641

Query: 739  AGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSP 560
            AGGSGKSQALQT+LR +P+LP+EVVLPTNELR DWL+KLPHNPPEQFRTFERAFV S +P
Sbjct: 642  AGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNPPEQFRTFERAFVSSTAP 701

Query: 559  VVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSE 380
            VVIFDDYGKLPQG++EAFA+    L+L ILTGDPRQSTHHE+NE+A+I++L PAT IFS 
Sbjct: 702  VVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESNEQAMIAQLEPATKIFSA 761

Query: 379  LSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGH 200
            L RYYINATHRN K LANKLGVYSSN  PL V+YGF+P+PG+HLLVPSL+KKAAF DAGH
Sbjct: 762  LCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLHLLVPSLVKKAAFADAGH 821

Query: 199  KVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLE 20
            KVSTYAGCQGITAP+VQILLD+DTTMC+ EVLYTALSRAVDSIHF+NSNAQSSAFWEKLE
Sbjct: 822  KVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSIHFINSNAQSSAFWEKLE 881

Query: 19   ATPYLK 2
            ATPYLK
Sbjct: 882  ATPYLK 887


>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
            virus]
          Length = 669

 Score = 1053 bits (2724), Expect = 0.0
 Identities = 523/666 (78%), Positives = 562/666 (84%), Gaps = 1/666 (0%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHPYAITPHTHAAA
Sbjct: 12   TDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHPYAITPHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHVEPKDVPRYPQ+
Sbjct: 72   KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHVEPKDVPRYPQE 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSL+P
Sbjct: 132  TIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLHP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
            QIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTAP   T+TAQRLETKGANHL
Sbjct: 192  QIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTAQRLETKGANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            FIFQRGNYLTPERRTFTTTEHYVTVPDIFLP KYNCRTPISKTIMMQMFFYIKSVKEAKE
Sbjct: 252  FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMFFYIKSVKEAKE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLRPLR 1628
            RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSGNL+QR+LRPL 
Sbjct: 312  RDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSGNLLQRILRPLT 371

Query: 1627 SDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHNPFTKPHPVNPD 1448
            S   ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +PFT+P PVNPD
Sbjct: 372  SGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDSPFTRPQPVNPD 431

Query: 1447 DADTMRAFREFXXXXXXXXXXTIADSLEGSAENLASHTSLKVGHADLSTEQLRALHELGN 1268
            DA+T  +F+ F           +  +LE  AE    H SL++    LS  QL ALH+LGN
Sbjct: 432  DAETTHSFQAF-----CQAAAAVETTLEQQAETPDEHQSLRLDCPTLSEHQLWALHKLGN 486

Query: 1267 TRLGGPLLPKITXXXXXXXXXXXXXXXXXPTQASASLNQ-GDHTDEAPVNSDPATLPWVA 1091
             R GGPLLP+                    T A+   +Q        P   DP TLPWVA
Sbjct: 487  ARCGGPLLPQ---RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPSPQDPTTLPWVA 543

Query: 1090 WLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTLRGLNR 911
            WLPKLNALGFEALEIQ DPSTG +IMPI D ++LP+A  P HW  P + ++++TLR LNR
Sbjct: 544  WLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDMEQIISTLRSLNR 603

Query: 910  FPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVIHGAGG 731
            +PTPW PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLTE+   NLAISVIHGAGG
Sbjct: 604  YPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTNLAISVIHGAGG 663

Query: 730  SGKSQA 713
            SGKSQA
Sbjct: 664  SGKSQA 669


>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
            gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
            RNA polymerase [Cassava common mosaic virus]
            gi|1587823|prf||2207297A ORF 1
          Length = 1449

 Score =  492 bits (1266), Expect = e-136
 Identities = 236/374 (63%), Positives = 295/374 (78%)
 Frame = -3

Query: 1123 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLS 944
            N+  A LPW  W+PKLNALGFEA E Q  P T  +IMPI D+    K  +P H       
Sbjct: 612  NAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KTGIPVHRETKAPQ 667

Query: 943  KVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTAN 764
            ++L  L+ L+R PT W PD  RA++FTSD+KN RTGK L +E+Q+WKE QT+  ++    
Sbjct: 668  ELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKEAQTLKVDHNIRP 727

Query: 763  LAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFER 584
            + +SVIHGAGGSGKS ALQ LLR +PELPI+V+LPTNELR+DWL KLP N PE FRTFE+
Sbjct: 728  VPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLPRNRPENFRTFEK 787

Query: 583  AFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLA 404
            A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HHE NE+A+I++L 
Sbjct: 788  AYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHHETNEQAMIAQLE 847

Query: 403  PATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKK 224
            P+T IFS+ SRYYINATHRN+K LAN LGVYS N+  LK+T+GFQP   +HLLVPSL+KK
Sbjct: 848  PSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIKDIHLLVPSLIKK 907

Query: 223  AAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQS 44
            AAF++AGHK STYAGCQGITA ++QILLD++T MC++EVLYTALSRAVDSIHF+N+   S
Sbjct: 908  AAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAVDSIHFINTAPTS 967

Query: 43   SAFWEKLEATPYLK 2
            S FWEKLEATPYLK
Sbjct: 968  SNFWEKLEATPYLK 981



 Score =  483 bits (1244), Expect = e-133
 Identities = 235/409 (57%), Positives = 298/409 (72%), Gaps = 12/409 (2%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            TDPSLKAVIQD++YRT+K EL Q +  NP+AQT EAAD LE LG+ +HPYAI  HTHAA 
Sbjct: 12   TDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTGEAADLLETLGVITHPYAIATHTHAAG 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            KA+E DLY  VSHYLP+++PV+F+FMKPAKL++  RGP H D F+N+ VEPKD+ RYP+ 
Sbjct: 72   KALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWVEPKDLARYPEQ 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            TV+  +  I T+IAFMGDTLHFL+P FV  LFA SPKL+T YAT+VLPPEAL+++ SLYP
Sbjct: 132  TVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPPEALHKMNSLYP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL-----TAPN-------QPTIT 2024
            QIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG +      AP+       +  +T
Sbjct: 192  QIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDGSEYLGTKWAVT 251

Query: 2023 AQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQM 1844
            AQR+ETKGANHLF+FQRG   TP+ R+  T   Y+TVP +FLP+K+N R P+ KTI  QM
Sbjct: 252  AQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSRQPLKKTIAQQM 311

Query: 1843 FFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLS 1664
            F YIKSVK+  ERDI++K RQLI T ELQ Y P E+ LL NYF   + L S    E+VL+
Sbjct: 312  FLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISELSSKASAEEVLA 371

Query: 1663 GNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTV 1517
            G+L ++L RP++S +   +    G+P F +L++AL W  + L  PVR V
Sbjct: 372  GSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420


>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
           virus]
          Length = 711

 Score =  466 bits (1198), Expect = e-128
 Identities = 227/237 (95%), Positives = 233/237 (98%)
 Frame = -3

Query: 712 LQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPVVIFDDYGK 533
           LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ PVVIFDDYGK
Sbjct: 1   LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60

Query: 532 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 353
           LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61  LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120

Query: 352 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQ 173
           HRNSKFLANKLGVYSSNSCPLKVTYG QPQPG+HLLVPSLMKKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180

Query: 172 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLK 2
           GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLK
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLK 237


>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  453 bits (1165), Expect = e-124
 Identities = 229/385 (59%), Positives = 276/385 (71%), Gaps = 1/385 (0%)
 Frame = -3

Query: 1153 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 977
            +G      PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + 
Sbjct: 535  EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594

Query: 976  LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 797
            +  H        V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKET
Sbjct: 595  IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648

Query: 796  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 617
            QT+  E +   + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P 
Sbjct: 649  QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708

Query: 616  NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 437
              PE+ +T+ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE
Sbjct: 709  VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768

Query: 436  ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 257
             NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   
Sbjct: 769  NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828

Query: 256  MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 77
            +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV 
Sbjct: 829  LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888

Query: 76   SIHFVNSNAQSSAFWEKLEATPYLK 2
            SIHF+N+    S+FWEKLEATPYLK
Sbjct: 889  SIHFINTGPTHSSFWEKLEATPYLK 913



 Score =  422 bits (1086), Expect = e-115
 Identities = 213/402 (52%), Positives = 274/402 (68%), Gaps = 3/402 (0%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            +DPSLKAVIQ+EAY++++  L   +H NP+A   E A+ LE  GI S PYA+  HTHAAA
Sbjct: 12   SDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDPYAVAAHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            K +E DLY  VSHY+PKENPV+FLFMK AKL++F RG   GD F+N   EPKD  RYP D
Sbjct: 72   KCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+ S +  I T +AFMGDTLHFL P+F+T LF  SP L TLYAT+VLPPEA ++LRSL+P
Sbjct: 132  TICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
             +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ +P+   ITAQR+ETK ANHL
Sbjct: 192  LVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            F+F RG   TP  R+F     Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+  E
Sbjct: 252  FVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 1637
             D++AKFRQL  T +LQ   P       LL  + E   S         +LSG+ ++RLL+
Sbjct: 312  TDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLLK 367

Query: 1636 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 1511
            PL   ++++ Q   GR  FV+L+KAL+W  IT    V   +T
Sbjct: 368  PLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 409


>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
            viral replicase [Hydrangea ringspot virus]
          Length = 1386

 Score =  453 bits (1165), Expect = e-124
 Identities = 229/385 (59%), Positives = 276/385 (71%), Gaps = 1/385 (0%)
 Frame = -3

Query: 1153 QGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIAD-VRDLPKAT 977
            +G      PV++    LPW  W P L  LGF+A EIQ  P    VIMPI + V  LP + 
Sbjct: 535  EGQKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQ 594

Query: 976  LPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKET 797
            +  H        V+  L  L+R PTPW P   RAR++TSD+KN RTG  L +E+ TWKET
Sbjct: 595  IQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKET 648

Query: 796  QTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPH 617
            QT+  E +   + +SVIHG GGSGKS A Q LLRQ+P++ ++VVLPTNELRLDW+ K P 
Sbjct: 649  QTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPK 708

Query: 616  NPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHE 437
              PE+ +T+ERAF    SPVV+FDDYGKLP GYIEA+      +ELVILTGD RQSTHHE
Sbjct: 709  VRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHE 768

Query: 436  ANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPG 257
             NE+A+IS+LAPAT +F  L RYYINATHRN + LANKL VYS      K+T GFQP   
Sbjct: 769  NNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKD 828

Query: 256  MHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVD 77
            +HLLVPSL+KK+A+ + GHKVSTYAGCQGITAP++QILLDNDT MC+KEVLYTALSRAV 
Sbjct: 829  LHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVH 888

Query: 76   SIHFVNSNAQSSAFWEKLEATPYLK 2
            SIHF+N+    S+FWEKLEATPYLK
Sbjct: 889  SIHFINTGPTHSSFWEKLEATPYLK 913



 Score =  422 bits (1086), Expect = e-115
 Identities = 213/402 (52%), Positives = 274/402 (68%), Gaps = 3/402 (0%)
 Frame = -3

Query: 2707 TDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAA 2528
            +DPSLKAVIQ+EAY++++  L   +H NP+A   E A+ LE  GI S PYA+  HTHAAA
Sbjct: 12   SDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDPYAVAAHTHAAA 71

Query: 2527 KAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQD 2348
            K +E DLY  VSHY+PKENPV+FLFMK AKL++F RG   GD F+N   EPKD  RYP D
Sbjct: 72   KCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLFEPKDAARYPLD 131

Query: 2347 TVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLYP 2168
            T+ S +  I T +AFMGDTLHFL P+F+T LF  SP L TLYAT+VLPPEA ++LRSL+P
Sbjct: 132  TICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPPEAKHKLRSLHP 191

Query: 2167 QIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPTITAQRLETKGANHL 1988
             +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ +P+   ITAQR+ETK ANHL
Sbjct: 192  LVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITAQRIETKAANHL 251

Query: 1987 FIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSVKEAKE 1808
            F+F RG   TP  R+F     Y T+P IFLP ++N RTP +KT + QMF Y+KS+K+  E
Sbjct: 252  FVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMFLYLKSIKKPTE 311

Query: 1807 RDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDVLSGNLIQRLLR 1637
             D++AKFRQL  T +LQ   P       LL  + E   S         +LSG+ ++RLL+
Sbjct: 312  TDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCILSGSALRRLLK 367

Query: 1636 PLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNT 1511
            PL   ++++ Q   GR  FV+L+KAL+W  IT    V   +T
Sbjct: 368  PLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHT 409


>ref|NP_044330.1| replicase [Papaya mosaic virus] gi|139137|sp|P20951.1|RDRP_PMV
            RecName: Full=RNA replication protein; AltName: Full=176
            kDa protein; AltName: Full=ORF1 protein; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=Helicase gi|222331|dbj|BAA03050.1| unnamed
            protein product [Papaya mosaic virus]
            gi|409915202|gb|AFV46461.1| replicase [Papaya mosaic
            virus]
          Length = 1547

 Score =  449 bits (1155), Expect = e-123
 Identities = 223/407 (54%), Positives = 290/407 (71%), Gaps = 8/407 (1%)
 Frame = -3

Query: 2704 DPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAK 2525
            D SL+AVIQ+EAYR +K  + +T+  NP+A     AD+LE LGI ++P+A+  HTHAAAK
Sbjct: 13   DVSLRAVIQEEAYRDIKLTIKETKTYNPYAHPVAVADSLEKLGIETNPFAVKAHTHAAAK 72

Query: 2524 AIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDT 2345
             IE D+Y++VS YLPKENP +F+FMK +KL++F RGP   D FLNAH+EPKDV RY  DT
Sbjct: 73   TIELDMYKIVSFYLPKENPTTFMFMKRSKLQYFRRGPQQKDVFLNAHIEPKDVARYDVDT 132

Query: 2344 VISR--LENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 2171
            +  +     I TN AFMGDTLHFL  + +  +F  SPKLQTLYAT+VLPPEAL+RL SL+
Sbjct: 133  LFDKNVTPQITTNTAFMGDTLHFLPLTAIERIFKSSPKLQTLYATMVLPPEALHRLHSLH 192

Query: 2170 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQP----TITAQRLETK 2003
            P IY L + ++ F+Y PGGHAGA+Y HKY+QLEW+ VG     ++      +T+Q LETK
Sbjct: 193  PGIYELEFHQEHFIYKPGGHAGAAYIHKYEQLEWIKVGRFKWADEKGLTHMVTSQILETK 252

Query: 2002 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 1823
            GANHLFIFQRG +LTPE R F+T   YVT+P IFLP+++N R PI KT   Q+F Y+KSV
Sbjct: 253  GANHLFIFQRGRFLTPELRCFSTETKYVTMPPIFLPKQFNARLPIKKTTAQQLFLYVKSV 312

Query: 1822 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 1643
            K   ERDIWAK RQL+ T ELQ Y P E+TLLVNYF   A L S TCF++VLSG + ++L
Sbjct: 313  KNVTERDIWAKMRQLLKTSELQDYNPREVTLLVNYFLLIARLRSETCFDNVLSGGMFKKL 372

Query: 1642 LRPLRS--DIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTR 1508
             +P  +  +IQ+   F  G   F +L++AL+W  +TL +P +T + R
Sbjct: 373  FKPFIAWWEIQKHKIF--GNEEFEQLMEALEWVDVTLTYPTKTFDNR 417



 Score =  434 bits (1116), Expect = e-118
 Identities = 220/368 (59%), Positives = 272/368 (73%)
 Frame = -3

Query: 1105 LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKVLTTL 926
            LPW AW+PKL  LGF+  ++Q DP+ G +I PI ++R +PK   PE   E     V  TL
Sbjct: 707  LPWKAWIPKLQNLGFQGRQLQYDPN-GALISPIEEIRSMPKCK-PEGVPEV----VYKTL 760

Query: 925  RGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLAISVI 746
             GL R PTP+ P+  RARA+TSDVKN R G  L ++ + W      L E     LAISVI
Sbjct: 761  DGLARAPTPYSPNPIRARAYTSDVKNCRIGALLRQQGKEWGCRFDALVEAGKRELAISVI 820

Query: 745  HGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSK 566
            HGAGGSGKSQALQTL++ NPEL I VVLPTNELRLDWL+KLP  P E+F+TFE+A +   
Sbjct: 821  HGAGGSGKSQALQTLIKDNPELDITVVLPTNELRLDWLRKLPKAPQEKFKTFEKALLAPP 880

Query: 565  SPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIF 386
            +P+VIFDDYGKLP GY+EAF +  ++++L+ILTGD +QS HHE+NE A  S + P     
Sbjct: 881  TPIVIFDDYGKLPAGYVEAFCLYFSTVQLIILTGDCKQSVHHESNENATTSSIEPLVKEA 940

Query: 385  SELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAAFTDA 206
            SEL RYYINATHRN K LANKLGVYS  +   +VT+G  P PG+H+LVPSL KK AF++ 
Sbjct: 941  SELCRYYINATHRNKKDLANKLGVYSEKTGLTEVTHGTTPIPGLHMLVPSLYKKQAFSEM 1000

Query: 205  GHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEK 26
            GHKVSTYAGCQGITAP++QILL  +T++C++EVLYTALSRAV SIHFVN++  + AFW+K
Sbjct: 1001 GHKVSTYAGCQGITAPKIQILLTEETSLCSREVLYTALSRAVHSIHFVNASPNNQAFWKK 1060

Query: 25   LEATPYLK 2
            LE TPYLK
Sbjct: 1061 LECTPYLK 1068


>gb|ACS28228.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  439 bits (1129), Expect = e-120
 Identities = 212/401 (52%), Positives = 286/401 (71%), Gaps = 6/401 (1%)
 Frame = -3

Query: 2704 DPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAK 2525
            DPSL+AVIQ+EAYR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK
Sbjct: 13   DPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAK 72

Query: 2524 AIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDT 2345
            +IE D+Y++  + LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + 
Sbjct: 73   SIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALED 132

Query: 2344 VI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 2171
            +   S    I T +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++
Sbjct: 133  LFKPSTTPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIH 192

Query: 2170 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPT----ITAQRLETK 2003
            P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETK
Sbjct: 193  PSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETK 252

Query: 2002 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 1823
            GANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSV
Sbjct: 253  GANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSV 312

Query: 1822 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 1643
            K   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L
Sbjct: 313  KTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKL 372

Query: 1642 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
             +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 373  FKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score =  417 bits (1071), Expect = e-113
 Identities = 214/372 (57%), Positives = 264/372 (70%)
 Frame = -3

Query: 1117 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 938
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE   +P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKV-DPSLLKM 753

Query: 937  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 758
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDNQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 578
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 577  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 398
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 397  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 218
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKEA 990

Query: 217  FTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 38
            F++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN    + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCGPNNQA 1050

Query: 37   FWEKLEATPYLK 2
            FW KLE+TPYLK
Sbjct: 1051 FWAKLESTPYLK 1062


>gb|ACO35593.1| RNA-dependent RNA polymerase [Alternanthera mosaic virus]
          Length = 1541

 Score =  438 bits (1127), Expect = e-120
 Identities = 212/401 (52%), Positives = 286/401 (71%), Gaps = 6/401 (1%)
 Frame = -3

Query: 2704 DPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAK 2525
            DPSL+AVIQ+EAYR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK
Sbjct: 13   DPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAK 72

Query: 2524 AIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDT 2345
            +IE D+Y++  + LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + 
Sbjct: 73   SIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNACIEPKDVTRYALED 132

Query: 2344 VI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 2171
            +   S    I T +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++
Sbjct: 133  LFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIH 192

Query: 2170 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPNQPT----ITAQRLETK 2003
            P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG     ++      +T+Q LETK
Sbjct: 193  PSIYELEFHEKNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHHVTSQILETK 252

Query: 2002 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 1823
            GANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSV
Sbjct: 253  GANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSV 312

Query: 1822 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 1643
            K   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G ++++L
Sbjct: 313  KTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGVLKKL 372

Query: 1642 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
             +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 373  FKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score =  418 bits (1075), Expect = e-114
 Identities = 215/372 (57%), Positives = 265/372 (71%)
 Frame = -3

Query: 1117 DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLPKATLPEHWNEPGLSKV 938
            +P  LPW AWL KL  LGF  +++Q DP+ G +I PI  V+ LPK + PE  N P L K+
Sbjct: 697  EPDNLPWKAWLGKLRNLGFRGMQLQYDPN-GALISPIESVKSLPKCS-PEKVN-PSLLKM 753

Query: 937  LTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTENVTANLA 758
            L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W      L EN    LA
Sbjct: 754  LDDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDWGHRFDSLVENGQRQLA 810

Query: 757  ISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAF 578
            ISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKKLP  P +Q +TFE+A 
Sbjct: 811  ISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKKLPTFPADQIKTFEKAL 870

Query: 577  VCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPA 398
            +    P VIFDDYGKLP GYIE+F+   +S EL++LTGD +QS HHE+NE A+ S + P 
Sbjct: 871  LAPTKPTVIFDDYGKLPAGYIESFSFYMSSAELLVLTGDSKQSVHHESNENAMSSLIEPF 930

Query: 397  TTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGMHLLVPSLMKKAA 218
            T    + SRYYINATHRN + LANKLGVYS  +    +T G  P PG+HLLVPSL KK A
Sbjct: 931  TLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHPVPGLHLLVPSLYKKQA 990

Query: 217  FTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSA 38
            F++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSRAV SIHFVN +  + A
Sbjct: 991  FSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSRAVHSIHFVNCSPNNQA 1050

Query: 37   FWEKLEATPYLK 2
            FW KLE+TPYLK
Sbjct: 1051 FWAKLESTPYLK 1062


>gb|ACS28233.1| replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  437 bits (1125), Expect = e-120
 Identities = 212/401 (52%), Positives = 284/401 (70%), Gaps = 6/401 (1%)
 Frame = -3

Query: 2704 DPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAK 2525
            DPSL+AVIQ+EAYR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK
Sbjct: 13   DPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAK 72

Query: 2524 AIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDT 2345
            +IE D+Y++  + LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + 
Sbjct: 73   SIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYNLED 132

Query: 2344 VI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 2171
            +   S    I T +AF+GDTLHFL    +  +F  S KLQTLYAT+VLPPEA++R+ S++
Sbjct: 133  LFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTSSQKLQTLYATMVLPPEAMHRMHSIH 192

Query: 2170 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL----TAPNQPTITAQRLETK 2003
            P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG          +  +T+Q LETK
Sbjct: 193  PSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKRYQKHYVTSQILETK 252

Query: 2002 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 1823
            GANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSV
Sbjct: 253  GANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSV 312

Query: 1822 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 1643
            K   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G  +++L
Sbjct: 313  KTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKL 372

Query: 1642 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
             +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 373  FKPIVAWWSTFKGALFGKEEFEQLMEALEWVDVSLSYKVET 413



 Score =  418 bits (1075), Expect = e-114
 Identities = 218/388 (56%), Positives = 272/388 (70%)
 Frame = -3

Query: 1165 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 986
            +++ QG  ++E     +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LP
Sbjct: 682  STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739

Query: 985  KATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 806
            K + PE  N P L K+L       R PTP+ P   RA+A++SDVKNSR G  L ++ + W
Sbjct: 740  KCS-PEKVN-PSLLKMLNDQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794

Query: 805  KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKK 626
                  L EN    LAISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKK
Sbjct: 795  GHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKK 854

Query: 625  LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 446
            LP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S+EL++LTGD +QS 
Sbjct: 855  LPTFPADQIKTFEKALLAPIKPTVIFDDYGKLPAGYIEAFSCYMSSVELLVLTGDSKQSV 914

Query: 445  HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 266
            HHE+NE A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P
Sbjct: 915  HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHP 974

Query: 265  QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 86
             PG+HLLVPSL KK AF++ GHKVSTYAGCQG+TAPRVQILL  +T+MC++EV+YTALSR
Sbjct: 975  VPGLHLLVPSLYKKEAFSEMGHKVSTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSR 1034

Query: 85   AVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            AV SIHFVN    + AFW KLE+TPYLK
Sbjct: 1035 AVHSIHFVNCGPNNQAFWAKLESTPYLK 1062


>ref|YP_459944.1| replicase [Alternanthera mosaic virus] gi|62082367|gb|AAX62019.1|
            replicase [Alternanthera mosaic virus]
          Length = 1541

 Score =  436 bits (1121), Expect = e-119
 Identities = 211/401 (52%), Positives = 284/401 (70%), Gaps = 6/401 (1%)
 Frame = -3

Query: 2704 DPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHPYAITPHTHAAAK 2525
            DPSL+AVIQ+EAYR +K+ +A+T+  NP+AQ P AAD+LE LGI S+P+++  HTHAAAK
Sbjct: 13   DPSLRAVIQEEAYREIKKTIAETKQYNPYAQDPAAADSLEKLGIESNPFSVRAHTHAAAK 72

Query: 2524 AIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHVEPKDVPRYPQDT 2345
            +IE D+Y++  + LPKENP++FLFMK +KL++FHRGP HGD FLNA +EPKDV RY  + 
Sbjct: 73   SIELDMYKITGYSLPKENPITFLFMKRSKLQYFHRGPQHGDLFLNAWIEPKDVTRYDLED 132

Query: 2344 VI--SRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPPEALYRLRSLY 2171
            +   S    I T +AF+GDTLHFL    +  +F +S KL TLYAT+VLPPEA++R+ S++
Sbjct: 133  LFKPSITPEIQTRVAFIGDTLHFLPLGAIREIFTNSQKLHTLYATMVLPPEAMHRMHSIH 192

Query: 2170 PQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHL----TAPNQPTITAQRLETK 2003
            P IY L + E  F+Y PGGHAGASY H+Y QL+WL VG          +  +T+Q LETK
Sbjct: 193  PSIYELEFHERNFIYKPGGHAGASYCHEYSQLQWLKVGKFEWCDKKYQKHYVTSQILETK 252

Query: 2002 GANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPEKYNCRTPISKTIMMQMFFYIKSV 1823
            GANHLF+FQRGN+ TP  RTF     +VT+P IFLP+KYN R PI KT+  Q+F YIKSV
Sbjct: 253  GANHLFVFQRGNFATPTYRTFGVETKFVTLPPIFLPKKYNARYPIKKTVAQQLFLYIKSV 312

Query: 1822 KEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSGNLIQRL 1643
            K   ERDIWAK RQ+I T ELQ Y   E+ L+VNY+   + LDS TCF++VL+G  +++L
Sbjct: 313  KTVTERDIWAKVRQIIKTAELQSYSAKELALIVNYYLLISKLDSVTCFDNVLTGGALKKL 372

Query: 1642 LRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRT 1520
             +P+ +          G+  F +L++AL+W  ++L + V T
Sbjct: 373  FKPIVAWWSTFKGKIFGKEEFEQLMEALEWVDVSLSYRVET 413



 Score =  418 bits (1074), Expect = e-114
 Identities = 217/388 (55%), Positives = 271/388 (69%)
 Frame = -3

Query: 1165 ASLNQGDHTDEAPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPIADVRDLP 986
            +++ QG  ++E     +P  LPW AWL KL  LGF   ++Q DP+ G +I PI  ++ LP
Sbjct: 682  STVKQGVTSEEGDY-VEPDNLPWKAWLEKLRNLGFRGTQLQYDPN-GALISPIESIKSLP 739

Query: 985  KATLPEHWNEPGLSKVLTTLRGLNRFPTPWCPDRARARAFTSDVKNSRTGKALHRETQTW 806
            K + PE  N P L K+L +     R PTP+ P   RA+A++SDVKNSR G  L ++ + W
Sbjct: 740  KCS-PEKVN-PSLLKMLNSQA---RAPTPFSPSPIRAKAYSSDVKNSRIGALLRQQGKDW 794

Query: 805  KETQTMLTENVTANLAISVIHGAGGSGKSQALQTLLRQNPELPIEVVLPTNELRLDWLKK 626
                  L EN    LAISVIHGAGGSGKS+ALQ  L+ NP+  + +VLPTNELRLDWLKK
Sbjct: 795  GHRFDSLVENGQRQLAISVIHGAGGSGKSRALQMYLKDNPDADVTIVLPTNELRLDWLKK 854

Query: 625  LPHNPPEQFRTFERAFVCSKSPVVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQST 446
            LP  P +Q +TFE+A +    P VIFDDYGKLP GYIEAF+   +S EL++LTGD +QS 
Sbjct: 855  LPTFPADQIKTFEKALLAPTKPTVIFDDYGKLPAGYIEAFSFYMSSAELLVLTGDSKQSV 914

Query: 445  HHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP 266
            HHE+NE A+ S + P T    + SRYYINATHRN + LANKLGVYS  +    +T G  P
Sbjct: 915  HHESNENAMSSLIEPFTLEADKYSRYYINATHRNKRDLANKLGVYSEVTGITSITQGNHP 974

Query: 265  QPGMHLLVPSLMKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSR 86
             PG+HLLVPSL KK AF++ GHK STYAGCQG+TAPRVQILL  +T+MC++EV+YTALSR
Sbjct: 975  VPGLHLLVPSLYKKQAFSEMGHKASTYAGCQGLTAPRVQILLSEETSMCSREVIYTALSR 1034

Query: 85   AVDSIHFVNSNAQSSAFWEKLEATPYLK 2
            AV SIHFVN    + AFW KLE+TPYLK
Sbjct: 1035 AVHSIHFVNCGPNNQAFWAKLESTPYLK 1062