BLASTX nr result
ID: Ephedra27_contig00004893
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00004893
(740 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27412.3| unnamed protein product [Vitis vinifera] 287 3e-75
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 287 3e-75
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 286 4e-75
ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 286 4e-75
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe... 284 2e-74
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa... 283 5e-74
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 283 5e-74
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 283 5e-74
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 278 1e-72
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 278 1e-72
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 278 1e-72
ref|XP_002315996.2| DNA-directed RNA polymerase family protein [... 277 2e-72
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|... 277 2e-72
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays] 277 3e-72
emb|CAE52834.1| RNA polymerase [Hordeum vulgare] 277 3e-72
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S... 276 4e-72
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 276 7e-72
ref|XP_002331270.1| predicted protein [Populus trichocarpa] 276 7e-72
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 275 9e-72
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 275 1e-71
>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 287 bits (734), Expect = 3e-75
Identities = 140/249 (56%), Positives = 181/249 (72%), Gaps = 3/249 (1%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSE---IQVVTKPQEDASSVKEELLRQKITQLLKKNKGK 570
+EHEV++QRF+ +KK + N+ VTK QE LR+K++ L+KK K +
Sbjct: 90 IEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEK--------LRKKVSMLMKKQKLQ 141
Query: 569 LVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFK 390
VRQI+ + D +KPW KVGS L++LLI+TA+IQPPADQ +GPP+IRPAF H K
Sbjct: 142 QVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLK 201
Query: 389 TSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPS 210
T + E K TR+YGVIECD LV++GLE+TARH+VIPYMPMLV P W G+DKG YLFLPS
Sbjct: 202 TVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPS 261
Query: 209 YVMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLAD 30
YVMRIHGA++QREA+KR R ++ ++ L+ LG+TKW+INK+VL VID +W GG LAD
Sbjct: 262 YVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLAD 321
Query: 29 MVSREDVLL 3
+V REDV L
Sbjct: 322 LVDREDVPL 330
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 287 bits (734), Expect = 3e-75
Identities = 140/249 (56%), Positives = 181/249 (72%), Gaps = 3/249 (1%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSE---IQVVTKPQEDASSVKEELLRQKITQLLKKNKGK 570
+EHEV++QRF+ +KK + N+ VTK QE LR+K++ L+KK K +
Sbjct: 258 IEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEK--------LRKKVSMLMKKQKLQ 309
Query: 569 LVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFK 390
VRQI+ + D +KPW KVGS L++LLI+TA+IQPPADQ +GPP+IRPAF H K
Sbjct: 310 QVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLK 369
Query: 389 TSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPS 210
T + E K TR+YGVIECD LV++GLE+TARH+VIPYMPMLV P W G+DKG YLFLPS
Sbjct: 370 TVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPS 429
Query: 209 YVMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLAD 30
YVMRIHGA++QREA+KR R ++ ++ L+ LG+TKW+INK+VL VID +W GG LAD
Sbjct: 430 YVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLAD 489
Query: 29 MVSREDVLL 3
+V REDV L
Sbjct: 490 LVDREDVPL 498
>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
isoform X2 [Oryza brachyantha]
Length = 839
Score = 286 bits (733), Expect = 4e-75
Identities = 134/246 (54%), Positives = 184/246 (74%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ +FL +KPKK ++ E+ + + ++E LR+K+T L+KK+K + VR
Sbjct: 117 IEHEVRLHKFL---EKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVR 173
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ K D +KPW AKVGS L++L+I+TA+IQPPA Q +GPP+IRPAF H +T
Sbjct: 174 YIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 233
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 234 KEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 293
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QREA+KR R QMQ V++ LD LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 294 RTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 353
Query: 20 REDVLL 3
R DV L
Sbjct: 354 RSDVAL 359
>ref|XP_006660443.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
isoform X1 [Oryza brachyantha]
Length = 703
Score = 286 bits (733), Expect = 4e-75
Identities = 134/246 (54%), Positives = 184/246 (74%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ +FL +KPKK ++ E+ + + ++E LR+K+T L+KK+K + VR
Sbjct: 90 IEHEVRLHKFL---EKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVR 146
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ K D +KPW AKVGS L++L+I+TA+IQPPA Q +GPP+IRPAF H +T
Sbjct: 147 YIVKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 206
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 207 KEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 266
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QREA+KR R QMQ V++ LD LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 267 RTHGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 326
Query: 20 REDVLL 3
R DV L
Sbjct: 327 RSDVAL 332
>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 284 bits (727), Expect = 2e-74
Identities = 136/246 (55%), Positives = 180/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+E EV++ +FL ++K K K+ E + DA+ + E L +K+T L+KK K K VR
Sbjct: 304 IEQEVRIHKFLEMTRKKKVDKDQE-----NGESDAAKKEREKLNKKVTNLMKKQKLKAVR 358
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I++K+D +K W +AKVGS L++LL QTAFIQPPADQ +GPP+IRPAF H F+T
Sbjct: 359 GIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVA 418
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
+ +R+YGVIECD LV +GLE+TARH+VIPYMPMLV P W G+DKG Y FLPSYVM
Sbjct: 419 KDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVM 478
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
RIHGA++QREA+KR R Q++ V+K LD LG+T+W++NK+VLSV+D +W GG LAD+V
Sbjct: 479 RIHGARQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADLVD 538
Query: 20 REDVLL 3
R DV L
Sbjct: 539 RNDVPL 544
>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA
polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 951
Score = 283 bits (723), Expect = 5e-74
Identities = 131/246 (53%), Positives = 182/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ +FL +K KK N E+ + + + ++E LR+K+T L+KK K + VR
Sbjct: 295 IEHEVRIHKFL---EKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVR 351
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ K D +KPW AKVGS L++L+I+TA+IQPPA Q +GPP+IRPAF H +T
Sbjct: 352 NIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 411
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 412 REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 471
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QR+A++R R QMQ V++ L+ LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 472 RTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 531
Query: 20 REDVLL 3
R DV L
Sbjct: 532 RTDVAL 537
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 283 bits (723), Expect = 5e-74
Identities = 131/246 (53%), Positives = 182/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ +FL +K KK N E+ + + + ++E LR+K+T L+KK K + VR
Sbjct: 295 IEHEVRIHKFL---EKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVR 351
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ K D +KPW AKVGS L++L+I+TA+IQPPA Q +GPP+IRPAF H +T
Sbjct: 352 NIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 411
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 412 REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 471
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QR+A++R R QMQ V++ L+ LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 472 RTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 531
Query: 20 REDVLL 3
R DV L
Sbjct: 532 RTDVAL 537
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 283 bits (723), Expect = 5e-74
Identities = 131/246 (53%), Positives = 182/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ +FL +K KK N E+ + + + ++E LR+K+T L+KK K + VR
Sbjct: 261 IEHEVRIHKFL---EKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVR 317
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ K D +KPW AKVGS L++L+I+TA+IQPPA Q +GPP+IRPAF H +T
Sbjct: 318 NIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVA 377
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 378 REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 437
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QR+A++R R QMQ V++ L+ LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 438 RTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 497
Query: 20 REDVLL 3
R DV L
Sbjct: 498 RTDVAL 503
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 278 bits (711), Expect = 1e-72
Identities = 136/248 (54%), Positives = 180/248 (72%), Gaps = 2/248 (0%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSV--KEELLRQKITQLLKKNKGKL 567
+E EV++ FL +KK K K+ K +ED V ++E LR+K+T L+KK K +
Sbjct: 300 IEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKVTNLMKKQKLRA 352
Query: 566 VRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKT 387
V QI+ + D +KPW +AKVGS L+DLL+QTA+IQPPA+Q PP+IRPAF H +T
Sbjct: 353 VGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRT 412
Query: 386 SVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSY 207
E +R+YG+I+CD LV +GLERTARH+VIPYMPMLV P W G+DKG +L+LPSY
Sbjct: 413 VAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSY 472
Query: 206 VMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADM 27
VMR HGA++QREA+KR SRNQ+Q V++ LD LG+TKW+INK+VLSV+D +W GG LAD+
Sbjct: 473 VMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADL 532
Query: 26 VSREDVLL 3
V R+D L
Sbjct: 533 VDRDDAPL 540
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 278 bits (711), Expect = 1e-72
Identities = 137/248 (55%), Positives = 180/248 (72%), Gaps = 2/248 (0%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSV--KEELLRQKITQLLKKNKGKL 567
+E EV++ FL +KK K K+ K +ED V ++E LR+K+T L+KK K +
Sbjct: 301 IEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKVTNLMKKQKLRA 353
Query: 566 VRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKT 387
V QI+ + D +KPW +AKVGS L++LL+QTA+IQPPA+Q PP+IRPAF H +T
Sbjct: 354 VGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRT 413
Query: 386 SVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSY 207
E +R+YG+I+CD LV +GLERTARH+VIPYMPMLV P W G+DKG +L+LPSY
Sbjct: 414 VAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSY 473
Query: 206 VMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADM 27
VMR HGA++QREA+KR SRNQ+Q V++ LD LGSTKW+INK+VLSVID +W GG LAD+
Sbjct: 474 VMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADL 533
Query: 26 VSREDVLL 3
V R+D L
Sbjct: 534 VDRDDAPL 541
>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 278 bits (711), Expect = 1e-72
Identities = 131/246 (53%), Positives = 180/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ +FL +KK K TK E+ V + + + +++ LR+K+T L+KK K + VR
Sbjct: 270 IEHEVRIHKFLEKTKK-KNTK--EVDNVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVR 326
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ K D T+PW AKVGS L++LLI+TA IQPP Q + P+IRPAF H +T
Sbjct: 327 NIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVT 386
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD L++QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 387 REQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 446
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QREA+K+ + QMQ +++ LD LGSTKW+INKKVLS++D +W GG LAD+V
Sbjct: 447 RTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLVD 506
Query: 20 REDVLL 3
R DV L
Sbjct: 507 RTDVAL 512
>ref|XP_002315996.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550329816|gb|EEF02167.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 862
Score = 277 bits (709), Expect = 2e-72
Identities = 137/249 (55%), Positives = 178/249 (71%), Gaps = 3/249 (1%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPK--KTKNSEIQVVTKPQEDASSVKE-ELLRQKITQLLKKNKGK 570
+E+E K+ +FL +KK K K K SE + V E KE E LR+K+T L+KK K
Sbjct: 134 IENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKKQKVH 193
Query: 569 LVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFK 390
VR+I+ +D + PW KVGS L+ L+I+TA+IQPP DQ +GPP+IRPAF H K
Sbjct: 194 QVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLK 253
Query: 389 TSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPS 210
T + K +R+YGVIECD LV++GLE++ARH+VIPYMPMLV P W G+D+G Y FLPS
Sbjct: 254 TITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYFFLPS 313
Query: 209 YVMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLAD 30
YVMRIHGAK+QR A+KR SRNQ++ V+K LD LG+TKW++NK++L VID +W GG LA
Sbjct: 314 YVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGVIDRIWASGGHLAG 373
Query: 29 MVSREDVLL 3
+V REDV L
Sbjct: 374 LVDREDVPL 382
>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
polymerase [Zea mays]
Length = 975
Score = 277 bits (709), Expect = 2e-72
Identities = 130/244 (53%), Positives = 180/244 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ RFL +K +K N E++ + + +V+++ LR+K+T L+KK K + VR
Sbjct: 253 IEHEVRINRFL---EKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKVTDLMKKQKLRQVR 309
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ D ++PW AKVGS L+DL I TA IQPPA Q +G P+IRPAF+H +T V
Sbjct: 310 NIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMV 369
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 370 KEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVM 429
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QR+A+KR R QMQ V++ L+ LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 430 RTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVD 489
Query: 20 REDV 9
R DV
Sbjct: 490 RTDV 493
>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 277 bits (708), Expect = 3e-72
Identities = 129/244 (52%), Positives = 180/244 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+EHEV++ RFL +K +K N E++ + + +++++ LR+K+T L+KK K + VR
Sbjct: 253 IEHEVRINRFL---EKTRKKNNKEMENEEEAGDTNIAIEQQRLRKKVTDLMKKQKLRQVR 309
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
I+ D ++PW AKVGS L+DL I TA IQPPA Q +G P+IRPAF+H +T V
Sbjct: 310 NIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMV 369
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 370 KEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVM 429
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QR+A+KR R QMQ V++ L+ LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 430 RTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVD 489
Query: 20 REDV 9
R DV
Sbjct: 490 RTDV 493
>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
Length = 862
Score = 277 bits (708), Expect = 3e-72
Identities = 133/246 (54%), Positives = 182/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
VEHEV++ +FL +KK K TK E+ V +P + + +++LLR+K+T L+KK K + VR
Sbjct: 142 VEHEVRIHKFLEKTKK-KNTK--EVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVR 198
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
++ K D T+PW AKVGS L++L I+TA IQPPA Q + PEIRPAF H +T
Sbjct: 199 HLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVA 258
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
R +K+R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYVM
Sbjct: 259 --REQKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVM 316
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
R HGA++QREA+K+ + QMQ +++ LD LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 317 RTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVD 376
Query: 20 REDVLL 3
R DV L
Sbjct: 377 RADVSL 382
>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein
SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 276 bits (707), Expect = 4e-72
Identities = 132/247 (53%), Positives = 179/247 (72%), Gaps = 1/247 (0%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEEL-LRQKITQLLKKNKGKLV 564
+EHEV++ RFL +K +K N E++ + D KE+ LR+K+T L+KK K + V
Sbjct: 253 IEHEVRINRFL---EKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQV 309
Query: 563 RQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTS 384
R I+ D ++PW QAKVGS L++L + TA IQPPA Q +G P+IRPAF+H +T
Sbjct: 310 RNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTV 369
Query: 383 VDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYV 204
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSYV
Sbjct: 370 AKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYV 429
Query: 203 MRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMV 24
MR HGA++QREA+KR R QMQ V++ L+ LGSTKW++NK+VLS++D +W GG LAD+V
Sbjct: 430 MRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLV 489
Query: 23 SREDVLL 3
R DV L
Sbjct: 490 DRTDVPL 496
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 276 bits (705), Expect = 7e-72
Identities = 134/253 (52%), Positives = 186/253 (73%), Gaps = 7/253 (2%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDAS-------SVKEELLRQKITQLLKK 582
+EHE ++ +FL +K KK KN E ++ ++ + DA+ S ++E LR+K+T L+KK
Sbjct: 260 IEHEGRIHKFL---EKTKKRKNVEAKI-SEGESDAAIEEGEKLSKEQEKLRKKVTTLIKK 315
Query: 581 NKGKLVRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFK 402
K + VR+I+ +D ++PW KVGS L+ L+I+TA+IQPP DQ +GPP+IRPAF
Sbjct: 316 QKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFV 375
Query: 401 HVFKTSVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYL 222
H KT + K +R+YGVIECD LV++GLE++ARH+VIPYMPMLV P W G+D+G +L
Sbjct: 376 HTLKTITKDTQKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHL 435
Query: 221 FLPSYVMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGG 42
FLPSYVMRIHG+K+QR+A+KR SRNQ++ V+K LD LG+TKW+INK+VL V+D +W GG
Sbjct: 436 FLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGG 495
Query: 41 GLADMVSREDVLL 3
LA +V RED L
Sbjct: 496 HLAGLVDREDAPL 508
>ref|XP_002331270.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 276 bits (705), Expect = 7e-72
Identities = 131/246 (53%), Positives = 181/246 (73%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSVKEELLRQKITQLLKKNKGKLVR 561
+E E+++ FL ++K K+ ++ V + + A +EE LR+K+T L+KK K VR
Sbjct: 124 IEQEIRIHNFLEKTRKKKENADNSKNSV-EGESPAVMNEEEKLRKKVTDLIKKQKLPAVR 182
Query: 560 QILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKTSV 381
+I+ +D +K W +AKVGS L++LL+QTA+IQPP DQ + PP++RPAF H F+T
Sbjct: 183 KIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPAFVHTFRTVS 242
Query: 380 DERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSYVM 201
E K +RKYGVI+CD+LV +GLE+T RH+VIPYMPMLV P W+G+DKG +LFLPSYVM
Sbjct: 243 YENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGAHLFLPSYVM 302
Query: 200 RIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADMVS 21
RIHGAK+QREA+KR + Q+Q V++ LD LG+TKW++NK+VLSV+D +W GG LAD+V
Sbjct: 303 RIHGAKQQREAVKRTPKKQLQLVFEALDTLGNTKWRVNKRVLSVVDRIWNNGGRLADLVD 362
Query: 20 REDVLL 3
R DV L
Sbjct: 363 RSDVPL 368
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 275 bits (704), Expect = 9e-72
Identities = 135/248 (54%), Positives = 179/248 (72%), Gaps = 2/248 (0%)
Frame = -1
Query: 740 VEHEVKVQRFLANSKKPKKTKNSEIQVVTKPQEDASSV--KEELLRQKITQLLKKNKGKL 567
+E EV++ FL +KK K K+ K +ED V ++E LR+K+T L+KK K +
Sbjct: 300 IEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKVTNLMKKQKLRA 352
Query: 566 VRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKT 387
V QI+ + D +KPW +AKVGS L+DLL+QTA+IQPPA+Q PP+I PAF H +T
Sbjct: 353 VGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRT 412
Query: 386 SVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSY 207
E +R+YG+I+CD LV +GLERTARH+VIPYMPMLV P W G+DKG +L+LPSY
Sbjct: 413 VAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSY 472
Query: 206 VMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADM 27
VMR HGA++QREA+KR SRNQ+Q V++ LD LG+TKW+INK+VLSV+D +W GG LAD+
Sbjct: 473 VMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADL 532
Query: 26 VSREDVLL 3
V R+D L
Sbjct: 533 VDRDDAPL 540
>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Setaria italica]
Length = 1005
Score = 275 bits (702), Expect = 1e-71
Identities = 134/248 (54%), Positives = 181/248 (72%), Gaps = 2/248 (0%)
Frame = -1
Query: 740 VEHEVKVQRFLANS-KKPKKTKNSEIQVVTKPQEDASSVKEEL-LRQKITQLLKKNKGKL 567
+EHEV++ RFL + KK K K +E ++ D+ KE+ LR+K+T L+KK K +
Sbjct: 283 IEHEVRIHRFLEKTRKKSNKEKENEEEIF-----DSDIAKEQQRLRKKVTDLMKKQKLRQ 337
Query: 566 VRQILNKNDPTKPWDDATQAKVGSALLDLLIQTAFIQPPADQCMEGPPEIRPAFKHVFKT 387
VR+I+ D ++PW AKVGS L++L I+TA IQPPA Q +G P+IRPAF+H +T
Sbjct: 338 VRKIVKNQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRT 397
Query: 386 SVDERSKKTRKYGVIECDALVKQGLERTARHVVIPYMPMLVRPNPWKGFDKGPYLFLPSY 207
E+ K +R+YGVI+CD LV+QGL+RTA+H+VIPYMPML+ P W G+DKG +LFLPSY
Sbjct: 398 VPKEQQKHSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSY 457
Query: 206 VMRIHGAKKQREALKRVSRNQMQKVYKVLDVLGSTKWKINKKVLSVIDTLWGEGGGLADM 27
VMR HGA++QREA+KR R QMQ V++ L+ LGSTKW++NK+VLS+ID +W GG LAD+
Sbjct: 458 VMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADL 517
Query: 26 VSREDVLL 3
V R DV L
Sbjct: 518 VDRTDVPL 525