BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00004512
         (628 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub...   123   5e-26
gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japo...   121   2e-25
gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indi...   121   2e-25
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su...   117   2e-24
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   8e-24
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   8e-24
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   8e-24
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub...   115   8e-24
ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [S...   114   2e-23
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...   114   2e-23
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun...   114   2e-23
gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg...   114   2e-23
gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum...   114   2e-23
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   114   3e-23
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su...   112   7e-23
emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]         112   9e-23
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi...   112   9e-23
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]           112   9e-23
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo...   112   1e-22
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   111   1e-22

>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
            distachyon]
          Length = 1470

 Score =  123 bits (308), Expect = 5e-26
 Identities = 72/164 (43%), Positives = 94/164 (57%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F++++SD++K+V  HT   NSM+AM+ +GSKGS  K VQQ A +G+Q    +  FPF  P
Sbjct: 730  FKSVFSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAACVGLQLPAGK--FPFRIP 787

Query: 314  PKLYRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSR 135
             +L  +        +        K L G     N   +I +SF EGLNP E  +HS+S R
Sbjct: 788  SELTCASWNRHKSLDCDISEGARKRLGGQ----NSHAVIRNSFIEGLNPLECLLHSISGR 843

Query: 134  GNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
             N FS+ ADVPG          RDI VAYDGTVR+ YG QIVQF
Sbjct: 844  ANFFSENADVPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQF 887


>gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
          Length = 1384

 Score =  121 bits (303), Expect = 2e-25
 Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F+++++D++K+VL H    NSM+AM+ SGSKGS  K VQQ A +G+Q       FPF  P
Sbjct: 669  FKSVFNDLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASTFPFRIP 726

Query: 314  PKL--YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVS 141
             +L          +  E T+  S+C   Q      N   +I +SF +GLNP E  +H++S
Sbjct: 727  SELSCVSWNRQKSLNCEITNNTSECMAGQ------NMYAVIRNSFLDGLNPLECLLHAIS 780

Query: 140  SRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
             R N FS+ ADVPG          RD  VAYDGTVR+ YG QIVQF
Sbjct: 781  GRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQF 826


>gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
          Length = 1384

 Score =  121 bits (303), Expect = 2e-25
 Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F+++++D++K+VL H    NSM+AM+ SGSKGS  K VQQ A +G+Q       FPF  P
Sbjct: 669  FKSVFNDLLKMVLQHVSKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASTFPFRIP 726

Query: 314  PKL--YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVS 141
             +L          +  E T+  S+C   Q      N   +I +SF +GLNP E  +H++S
Sbjct: 727  SELSCVSWNRQKSLNCEITNNTSECMAGQ------NMYAVIRNSFLDGLNPLECLLHAIS 780

Query: 140  SRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
             R N FS+ ADVPG          RD  VAYDGTVR+ YG QIVQF
Sbjct: 781  GRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGRQIVQF 826


>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1492

 Score =  117 bits (294), Expect = 2e-24
 Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  H    NSM+AM+ SGSKGS  K VQQ A +G+Q       FPF
Sbjct: 748  ITSFKSVFNDLLKMVHQHASKDNSMMAMINSGSKGSVLKFVQQTACVGLQL--PASIFPF 805

Query: 323  GFPPKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFI 153
              P +L            +  ++  C+   G+ E +   N   +I +SF +GLNP E  +
Sbjct: 806  RIPSELS-------CVSWNRHKSLNCEMTDGTSERMGGQNIYAVIRNSFLDGLNPLECLL 858

Query: 152  HSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            H++S R N FS+ ADVPG          RD  VAYDGTVR+ YG QIVQF
Sbjct: 859  HAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVQF 908


>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
           [Setaria italica]
          Length = 1181

 Score =  115 bits (289), Expect = 8e-24
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
 Frame = -3

Query: 503 LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
           +  F+++++D++K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 445 IMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPF 502

Query: 323 GFPPKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYF 156
             P +L    +    +     ESTS+     H++G     N   +I +SF EGLNP E  
Sbjct: 503 RIPSQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECL 553

Query: 155 IHSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
           +H++S R N FS+ ADVPG          RD+ VAYDGTVR+ YG  I+QF
Sbjct: 554 LHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQF 604


>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
            [Setaria italica]
          Length = 1362

 Score =  115 bits (289), Expect = 8e-24
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 626  IMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPF 683

Query: 323  GFPPKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYF 156
              P +L    +    +     ESTS+     H++G     N   +I +SF EGLNP E  
Sbjct: 684  RIPSQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECL 734

Query: 155  IHSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +H++S R N FS+ ADVPG          RD+ VAYDGTVR+ YG  I+QF
Sbjct: 735  LHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQF 785


>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
            [Setaria italica]
          Length = 1450

 Score =  115 bits (289), Expect = 8e-24
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 714  IMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPF 771

Query: 323  GFPPKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYF 156
              P +L    +    +     ESTS+     H++G     N   +I +SF EGLNP E  
Sbjct: 772  RIPSQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECL 822

Query: 155  IHSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +H++S R N FS+ ADVPG          RD+ VAYDGTVR+ YG  I+QF
Sbjct: 823  LHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQF 873


>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
            [Setaria italica] gi|514785102|ref|XP_004970757.1|
            PREDICTED: DNA-directed RNA polymerase D subunit 1-like
            isoform X4 [Setaria italica]
          Length = 1451

 Score =  115 bits (289), Expect = 8e-24
 Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 4/171 (2%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  H    NSM+ M+ +GSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 715  IMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLKYVQQTACVGLQLPASK--FPF 772

Query: 323  GFPPKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYF 156
              P +L    +    +     ESTS+     H++G     N   +I +SF EGLNP E  
Sbjct: 773  RIPSQLSCVSWNRQKSLNCEAESTSE-----HVEGQ----NLYAVIRNSFIEGLNPLECL 823

Query: 155  IHSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +H++S R N FS+ ADVPG          RD+ VAYDGTVR+ YG  I+QF
Sbjct: 824  LHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQHIMQF 874


>ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
            gi|241938145|gb|EES11290.1| hypothetical protein
            SORBIDRAFT_06g025933 [Sorghum bicolor]
          Length = 1203

 Score =  114 bits (286), Expect = 2e-23
 Identities = 69/167 (41%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F++++SD++K+V  H    NSM+ M+ +GSKGS  K  QQ A +G+Q    +  FPF  P
Sbjct: 551  FKDVFSDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACVGLQLPASK--FPFRVP 608

Query: 314  PKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFIHSV 144
             +L               Q S     +G+ E +   N   +I +SF EGLNP E  +H++
Sbjct: 609  SQLSCI--------RWNRQKSLNYEAEGTNERVGGQNLYAVIRNSFIEGLNPLECLLHAI 660

Query: 143  SSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            S R N FS+ ADVPG          RDI VAYDGTVR+ YG QIVQF
Sbjct: 661  SGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQF 707


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score =  114 bits (286), Expect = 2e-23
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 4/168 (2%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F++++ D++K+V  H    NSM+ M+ +GSKGS  K  QQ A +G+Q    +  FPF  P
Sbjct: 717  FKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASK--FPFRIP 774

Query: 314  PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 147
             +L    +    +     ESTS+          +   N   +I +SF EGLNP E  +H+
Sbjct: 775  SQLSCISWNGQKSLNYEAESTSER---------VGGQNLYAVIKNSFIEGLNPLECLLHA 825

Query: 146  VSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +S R N FS+ ADVPG          RDI VAYDGTVR+ YG QIVQF
Sbjct: 826  ISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQF 873


>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
            gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
            D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
            TPA: putative DNA dependent RNA polymerase D largest
            subunit family protein [Zea mays]
            gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
            RNA polymerase D largest subunit family protein [Zea
            mays]
          Length = 1444

 Score =  114 bits (286), Expect = 2e-23
 Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 4/168 (2%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F++++ D++K+V  H    NSM+ M+ +GSKGS  K  QQ A +G+Q    +  FPF  P
Sbjct: 717  FKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASK--FPFRIP 774

Query: 314  PKL----YRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHS 147
             +L    +    +     ESTS+          +   N   +I +SF EGLNP E  +H+
Sbjct: 775  SQLSCISWNGQKSLNYEAESTSER---------VGGQNLYAVIKNSFIEGLNPLECLLHA 825

Query: 146  VSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +S R N FS+ ADVPG          RDI VAYDGTVR+ YG QIVQF
Sbjct: 826  ISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQF 873


>gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
          Length = 1334

 Score =  114 bits (285), Expect = 2e-23
 Identities = 72/168 (42%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F++++SD+ K+V  HT   NSM+ M  +GSKGS  K VQQ A +G+Q    R  FPF  P
Sbjct: 659  FKSVFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASR--FPFRIP 716

Query: 314  PKLYRSFHTTVIPKESTSQASKCKHL-QGSLESI---NYLGLIGSSFFEGLNPFEYFIHS 147
             +L              S AS  +H  +G+ E +   N   +I +SF  GLNP E  +HS
Sbjct: 717  SEL--------------SCASWNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHS 762

Query: 146  VSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +S R N FS+ ADVPG          RD+ VAYDGTVR+ YG QI+QF
Sbjct: 763  ISGRANFFSENADVPGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQF 810


>gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum urartu]
          Length = 1402

 Score =  114 bits (285), Expect = 2e-23
 Identities = 72/168 (42%), Positives = 95/168 (56%), Gaps = 4/168 (2%)
 Frame = -3

Query: 494  FRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFP 315
            F++++SD+ K+V  HT   NSM+ M  +GSKGS  K VQQ A +G+Q    R  FPF  P
Sbjct: 695  FKSVFSDLQKMVQQHTAKNNSMMMMTNAGSKGSMLKFVQQTACVGLQLPASR--FPFRIP 752

Query: 314  PKLYRSFHTTVIPKESTSQASKCKHL-QGSLESI---NYLGLIGSSFFEGLNPFEYFIHS 147
             +L              S AS  +H  +G+ E +   N   +I +SF  GLNP E  +HS
Sbjct: 753  SEL--------------SCASWNRHKSEGTGECLGGQNLYAVIRNSFAGGLNPLECLLHS 798

Query: 146  VSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            +S R N FS+ ADVPG          RD+ VAYDGTVR+ YG QI+QF
Sbjct: 799  ISGRANFFSENADVPGTLTRKLMYHLRDLYVAYDGTVRSSYGQQIMQF 846


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
            sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
            QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Cucumis sativus]
          Length = 1469

 Score =  114 bits (284), Expect = 3e-23
 Identities = 73/211 (34%), Positives = 112/211 (53%), Gaps = 3/211 (1%)
 Frame = -3

Query: 626  QMLLDRHAHRLL--IEEGGIVFCDSQKNLVMETRKYNILHEDILCEFRNIYSDIIKVVLD 453
            Q+++D H   L+   E+   +   + + L+ E +K   L++  +  F+ ++ DI  +V  
Sbjct: 669  QLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLVYK 728

Query: 452  HTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPFGFPPKLY-RSFHTTVIP 276
            ++   NS++ M K+GSKG+  KLVQ    LG+Q         F  P KL   ++++  +P
Sbjct: 729  YSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQ--HSLVTLSFSLPHKLSCAAWNSQKMP 786

Query: 275  KESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSVSSRGNSFSQGADVPGX 96
            +           L    +S     ++ +SF  GLNPFE F HSV++R +SFS  A+VPG 
Sbjct: 787  RYIQKDG-----LPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGT 841

Query: 95   XXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
                     RDI  AYDGTVRN YGNQ+VQF
Sbjct: 842  LTRKLTFLMRDIYTAYDGTVRNAYGNQLVQF 872


>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1386

 Score =  112 bits (281), Expect = 7e-23
 Identities = 65/167 (38%), Positives = 92/167 (55%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F++I++D++K+V  H    NSM+AM+ SGSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 642  ITSFKSIFNDLLKMVQHHVSKDNSMMAMINSGSKGSIPKFVQQTACVGLQLPASK--FPF 699

Query: 323  GFPPKLYRSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFEYFIHSV 144
              P  L          +  +       +   S+   +   +I +SF +GLNP E  +H++
Sbjct: 700  KIPSIL----SCVSWNRHKSLDYEITDYTIESMGGQSMYAVIRNSFLDGLNPLECLLHAI 755

Query: 143  SSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            S R N FS+ ADVPG          RD  +AYDGTVR+ YG QIVQF
Sbjct: 756  SGRANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSSYGQQIVQF 802


>emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]
          Length = 1664

 Score =  112 bits (280), Expect = 9e-23
 Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  +    NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 612  MTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPF 669

Query: 323  GFPPKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFI 153
              P +L            +  ++  C+   G+ E +   +   ++ +SF +GLNP E  +
Sbjct: 670  RIPSQLS-------CVSWNRHKSRNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLL 722

Query: 152  HSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            H++S R N FS+ ADVPG          RD  VAYDGTVR+ YG QIV+F
Sbjct: 723  HAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRF 772


>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
          Length = 1598

 Score =  112 bits (280), Expect = 9e-23
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  +    NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 662  MTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPF 719

Query: 323  GFPPKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFI 153
              P +L            +  ++  C+   G+ E +   +   +I +SF +GLNP E  +
Sbjct: 720  RIPSQLS-------CVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLL 772

Query: 152  HSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            H++S R N FS+ ADVPG          RD  VAYDGTVR+ YG QIV+F
Sbjct: 773  HAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRF 822


>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
          Length = 1407

 Score =  112 bits (280), Expect = 9e-23
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  +    NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 689  MTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPF 746

Query: 323  GFPPKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFI 153
              P +L            +  ++  C+   G+ E +   +   +I +SF +GLNP E  +
Sbjct: 747  RIPSQLS-------CVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLL 799

Query: 152  HSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            H++S R N FS+ ADVPG          RD  VAYDGTVR+ YG QIV+F
Sbjct: 800  HAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRF 849


>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
          Length = 1623

 Score =  112 bits (279), Expect = 1e-22
 Identities = 63/170 (37%), Positives = 96/170 (56%), Gaps = 3/170 (1%)
 Frame = -3

Query: 503  LCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDRQNFPF 324
            +  F+++++D++K+V  +    NSM+ M+ SGSKGS  K VQQ A +G+Q    +  FPF
Sbjct: 683  MTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASK--FPF 740

Query: 323  GFPPKLYRSFHTTVIPKESTSQASKCKHLQGSLESI---NYLGLIGSSFFEGLNPFEYFI 153
              P +L            +  ++  C+   G+ E +   +   ++ +SF +GLNP E  +
Sbjct: 741  RIPSQLS-------CVSWNRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLECLL 793

Query: 152  HSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
            H++S R N FS+ ADVPG          RD  VAYDGTVR+ YG QIV+F
Sbjct: 794  HAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRF 843


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  111 bits (278), Expect = 1e-22
 Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
 Frame = -3

Query: 518  LHEDILCEFRNIYSDIIKVVLDHTQVGNSMVAMVKSGSKGSFQKLVQQGAFLGIQFYRDR 339
            L +  +C F+  + DI  +V  +    NS++AM+K+GSKG+  KLVQQG  LG+Q     
Sbjct: 729  LCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQ--HSL 786

Query: 338  QNFPFGFPPKLY-RSFHTTVIPKESTSQASKCKHLQGSLESINYLGLIGSSFFEGLNPFE 162
                F  P +L   +++   +P    +  S+        ES     ++ +SF  GLNP E
Sbjct: 787  VPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYA------ESYIPYAVVENSFLMGLNPLE 840

Query: 161  YFIHSVSSRGNSFSQGADVPGXXXXXXXXXXRDIVVAYDGTVRNLYGNQIVQF 3
             F+HSV+SR +SFS  AD+PG          RD+ +AYDGTVRN YGNQ+VQF
Sbjct: 841  CFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQF 893