BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00003687
         (1846 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [A...   348   3e-93
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-...   347   1e-92
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-...   346   2e-92
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]             344   6e-92
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   344   6e-92
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr...   342   2e-91
ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protei...   342   2e-91
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps...   342   3e-91
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali...   342   3e-91
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              342   4e-91
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   341   5e-91
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-...   340   9e-91
ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [S...   340   1e-90
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha...   340   2e-90
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr...   340   2e-90
gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]             339   3e-90
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   338   4e-90
ref|XP_004972754.1| PREDICTED: RNA polymerase sigma factor sigA-...   338   5e-90
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe...   338   5e-90
emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bic...   338   5e-90

>ref|XP_006878659.1| hypothetical protein AMTR_s00011p00266100 [Amborella trichopoda]
            gi|548832002|gb|ERM94804.1| hypothetical protein
            AMTR_s00011p00266100 [Amborella trichopoda]
          Length = 497

 Score =  348 bits (894), Expect = 3e-93
 Identities = 200/503 (39%), Positives = 303/503 (60%), Gaps = 9/503 (1%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSK--PFHDQGMSTITTLPRYGIIVCARKVT-NART 1660
            M+TAA++GIS GKRLL +SF   ++ +  P +D G +    +     IV  +       +
Sbjct: 1    MATAAVIGISTGKRLLRSSFLASDIERVIPIYDFGATQFPAVSHKSFIVSKKSPGFGPNS 60

Query: 1659 RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 1480
               +  QY+ A +           E + +  +S+S    + N   + SLE+L++++K+ML
Sbjct: 61   PSNRQTQYINAIK-----------EHVNAPSSSSSSSTTEANPDFESSLEALILLQKSML 109

Query: 1479 EKQWE------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKILR 1318
            EKQW         S D  E+      V S   SAR+RR + RR   +    G V+   +R
Sbjct: 110  EKQWNLSFDQAGTSTDLCEESCKKLGVISSGASARQRRNSLRRPLNQRA--GTVL---VR 164

Query: 1317 RNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKAKL 1138
            R K+   ++   +  G            ++L   EV  LS KI+ GL L   + RLK KL
Sbjct: 165  RKKQATPIVSPELLQGHFRGYVKGISNDSLLSHAEVVHLSWKIRAGLSLEEHKSRLKEKL 224

Query: 1137 GYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDLI 958
            G++PS    A+S+ +S  EL++KL+E S+A+++L MSN+RLV+SIA+KY+N+G+E+ DLI
Sbjct: 225  GFDPSDELLASSLKISRSELHSKLIECSLAKEKLAMSNIRLVMSIAQKYDNMGIEMADLI 284

Query: 957  REGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQILS 778
            + GL GL RGIEKFD SKG+  STYVYWWIRQ ++RA+ ++S+T +   H+ ER+  I +
Sbjct: 285  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAMVENSRTLRLPTHLHERLSLIRN 344

Query: 777  VKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQDF 598
             K  L+ QG  P+  R+AK+LN+S   VKNA +   +V S+D +A+P  N     T   +
Sbjct: 345  AKIRLKEQGLTPSIHRIAKSLNMSKKKVKNATEAMTKVFSLDREAFPTLNGLPGETLHSY 404

Query: 597  IADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQLG 418
            IAD+++ + PW+ ++   L+ +V  L+ STL +REQ I RLYYGLD E  TWEDIS+++G
Sbjct: 405  IADNNLMNNPWHGVDEWLLKAEVNKLISSTLAEREQDIIRLYYGLDKECHTWEDISRKIG 464

Query: 417  LSRERVRQIGIVSMEKLKHTMRS 349
            LSRERVRQ+G+V++EKLK+  R+
Sbjct: 465  LSRERVRQVGLVALEKLKNAARN 487


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
          Length = 503

 Score =  347 bits (890), Expect = 1e-92
 Identities = 202/506 (39%), Positives = 310/506 (61%), Gaps = 13/506 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPFH---DQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G+S GKRLL++S+ + ++ +      D G +    +P   +IV  +      T
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 1659 --RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKT 1486
                 +  Q +KA ++     P        S     S+  E ++  +  S+E+L++++K+
Sbjct: 61   FPASNQQNQSIKALKEHVDDAPTIADPWFQSYN---SNDLEVESSEMGYSVEALLLLQKS 117

Query: 1485 MLEKQW------EEYSNDGSEDKEASEV-VRSHKPSARERRLASRRKST-EGCYKGDVMN 1330
            MLEKQW      E  + + S+ K+  +V V     SAR+RR+ ++RK+  + C    + +
Sbjct: 118  MLEKQWNLSFEREVLTENSSKGKKCRKVAVTCSGVSARQRRMNTKRKTAIKTCGAMQLKS 177

Query: 1329 KILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRL 1150
            KI        +L H    + +G  +        +L   EV  LS+KI+ GL L   + RL
Sbjct: 178  KI-----SPELLQHRLKGYVKGLVSEE------LLSHAEVVNLSEKIKVGLSLEEHKSRL 226

Query: 1149 KAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEI 970
            K KLG EPS  Q A S+ +S  EL A+++E S+AR++L MSNVRLV+SIA+KY+NLG E+
Sbjct: 227  KEKLGCEPSDDQMATSLKISRTELRARMIECSLAREKLAMSNVRLVMSIAQKYDNLGAEM 286

Query: 969  GDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVY 790
            GDL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER+ 
Sbjct: 287  GDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLS 346

Query: 789  QILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSST 610
             I + K  LE +G  PT +R+AK LN+S   V+NA +   +++S+D +A+P  N  +  T
Sbjct: 347  LIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKIISLDREAFPSLNGLQGET 406

Query: 609  FQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDIS 430
               +IAD+ +++ PW  ++  AL+++V  L+  TL +RE+ I RLYYGL+ E  TWEDIS
Sbjct: 407  HHSYIADNRVENIPWNGVDEWALKDEVNRLINVTLVEREREIIRLYYGLEKECLTWEDIS 466

Query: 429  KQLGLSRERVRQIGIVSMEKLKHTMR 352
            K++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 467  KRIGLSRERVRQVGLVALEKLKHAAR 492


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Glycine
            max] gi|571478813|ref|XP_006587676.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Glycine
            max]
          Length = 503

 Score =  346 bits (888), Expect = 2e-92
 Identities = 201/508 (39%), Positives = 308/508 (60%), Gaps = 15/508 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPFH---DQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G+S GKRLL++S+ + +V +      D G +    +P   +I   +      T
Sbjct: 1    MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 1659 --RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKT 1486
                 +  Q +KA ++     P        S     S+  E ++  +  S+E+L++++K+
Sbjct: 61   FPASNQQNQSIKALKEHVDDAPTIADSWFQSCN---SNDLEVESSEMGYSVEALLLLQKS 117

Query: 1485 MLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKST-EGCYKGDV 1336
            MLEKQW          E+S+ G + K+ +  V     SAR+RR+ ++RK+  + C    +
Sbjct: 118  MLEKQWNLSFEREVLTEHSSKGKKCKKVA--VTCSGVSARQRRMNTKRKTAIKTCGAMQL 175

Query: 1335 MNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQ 1156
             +KI        +L H    + +G  +        +L   EV  LS++I+ GL L   + 
Sbjct: 176  KSKI-----SPELLQHRLKGYVKGIVSEE------LLSHAEVVNLSERIKVGLSLEEHKS 224

Query: 1155 RLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGL 976
            RLK +LG EPS  Q A S+ +S  EL A+++E ++AR++L MSNVRLV+SIA+KY+NLG 
Sbjct: 225  RLKERLGCEPSDDQMAISLKISRTELRARMIECTLAREKLAMSNVRLVMSIAQKYDNLGA 284

Query: 975  EIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQER 796
            E+GDL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER
Sbjct: 285  EMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHER 344

Query: 795  VYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKS 616
            +  I + K  LE +G  PT +R+AK LN+S   V+NA +   + +S+D +A+P  N  + 
Sbjct: 345  LSLIRNAKFRLEERGITPTIDRIAKYLNMSQKKVRNATEAISKTISLDREAFPSLNGIQG 404

Query: 615  STFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWED 436
             T   +IADD +++ PW  ++  AL+++V  L+  TL +RE+ I RLYYGLD E  TWED
Sbjct: 405  ETHHSYIADDRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKEGLTWED 464

Query: 435  ISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            ISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 465  ISKRIGLSRERVRQVGLVALEKLKHAAR 492


>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
          Length = 508

 Score =  344 bits (883), Expect = 6e-92
 Identities = 203/504 (40%), Positives = 306/504 (60%), Gaps = 11/504 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G++ GKRLL++SF++ ++ +     +D G S   T     +IV A+K +N   
Sbjct: 2    MATAAVIGLTTGKRLLSSSFSYSDIIEKLSYANDYGSSHHQTSSTKSLIV-AKKSSNCSQ 60

Query: 1659 RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 1480
                  +  ++ +  +  V  A+    A      S+  E ++  L  S+E+L++++K+ML
Sbjct: 61   SLPSSNRRAQSIKALKEHVDSASIVSTAEPLFQGSNDLEVESYDLDYSVEALLLLQKSML 120

Query: 1479 EKQWEEYSNDGSEDKEASEVVRSHKP------SARERRLASRRKSTEGCYKGDVMNK-IL 1321
            EKQW          +  S  +    P      SAR+RR  ++RK         + NK I+
Sbjct: 121  EKQWTLSFERTVFTESPSRKIHKKIPVTCSGVSARQRRFNTKRKIL-------IQNKSII 173

Query: 1320 RRNKRQ-RVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKA 1144
            + N +Q R L+   +             +  +L   EV  LS+KI+ GL L   R RLK 
Sbjct: 174  QPNAKQLRSLISPELLQSRLKGYVKGVVSDELLSHAEVVRLSKKIKAGLSLEEHRLRLKE 233

Query: 1143 KLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGD 964
            +LG EPS  Q A S+ +S  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N+G E+ D
Sbjct: 234  RLGCEPSDEQLATSLKISRAELRSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMSD 293

Query: 963  LIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQI 784
            LI+ GL GL RGIEKFD SKGY  STYVYWWIRQ ++RAL ++S+T +   H+ ER+  I
Sbjct: 294  LIQGGLIGLLRGIEKFDSSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLI 353

Query: 783  LSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQ 604
             + K  LE +G  PT +R+A++LN+S   V+NA +   +V S+D  A+P  N     T  
Sbjct: 354  RNAKIRLEEKGITPTIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETHH 413

Query: 603  DFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQ 424
             +IAD+ +++ PW+ ++  AL+++V  L+  TL +RE+ I RLYYGLD E+ TWEDISK+
Sbjct: 414  SYIADNHVENIPWHGVDEWALKDEVNRLITITLGEREREIIRLYYGLDKESLTWEDISKR 473

Query: 423  LGLSRERVRQIGIVSMEKLKHTMR 352
            +GLSRERVRQ+G+V++EKLKH  R
Sbjct: 474  IGLSRERVRQVGLVALEKLKHAAR 497


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  344 bits (883), Expect = 6e-92
 Identities = 204/513 (39%), Positives = 310/513 (60%), Gaps = 18/513 (3%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF----HDQGMSTITTLPRYGIIVCARKVTNAR 1663
            M TAA++G+SAG RLL +S  + +V++      +D G     + P   +I  A+K +N  
Sbjct: 2    MGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLI-SAKKPSNYT 60

Query: 1662 TRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTM 1483
                +  Q +KA ++    V  A+A   A  + S+S  E +D ++L   +E+ ++++K+M
Sbjct: 61   PSSNRSIQSMKALKEH---VESASAPSTADPDLSSSSSEVEDEEYL---VEAFLLLQKSM 114

Query: 1482 LEKQW---------EEYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMN 1330
            LEKQW         EE  + G + ++    V     SAR+RR++ R++         VMN
Sbjct: 115  LEKQWNLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKR---------VMN 165

Query: 1329 KILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKRE-----EVTWLSQKIQCGLHLHR 1165
            +  +   R R  L        G  N  +     V+  E     +V  LS KI+ GL L  
Sbjct: 166  E--KSKSRVRAAL--------GVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLED 215

Query: 1164 IRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYEN 985
             + RLK ++G EP+  Q AAS+ MS  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N
Sbjct: 216  HKSRLKERIGSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDN 275

Query: 984  LGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHM 805
            +G E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+
Sbjct: 276  MGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHL 335

Query: 804  QERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNL 625
             ER+  I + K  LE +G  P+ +R+A+ LN+S   V+NA +   +V S+D +A+P  N 
Sbjct: 336  HERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNG 395

Query: 624  GKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQT 445
                T   +IAD  +++ PW+ ++  AL+++V  L+ +TL +RE+ I RLYYGLD E  T
Sbjct: 396  LPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLT 455

Query: 444  WEDISKQLGLSRERVRQIGIVSMEKLKHTMRSG 346
            WEDISK++GLSRERVRQ+G+V++EKLK+  R G
Sbjct: 456  WEDISKRIGLSRERVRQVGLVALEKLKNAARKG 488


>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
            gi|557539599|gb|ESR50643.1| hypothetical protein
            CICLE_v10031289mg [Citrus clementina]
          Length = 508

 Score =  342 bits (878), Expect = 2e-91
 Identities = 208/508 (40%), Positives = 311/508 (61%), Gaps = 15/508 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G+SAGKRLL++SF + ++S+ F   +D G S  + +     +V A+K +N   
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLG-SANSQVGSTKNVVAAKKSSNYNP 60

Query: 1659 R---KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEK 1489
                  +  Q +KA ++       +TAE  A    S     E+++  L  S+E+L++++K
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSI----EEESSELDYSVEALLLLQK 116

Query: 1488 TMLEKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKSTEGCYKGDVMNK 1327
            +MLEKQW          D    K   +V V     SAR+RRL S++K           NK
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS-------QNK 169

Query: 1326 -ILRRN--KRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQ 1156
             +L++N  K+ R ++   +             +  +L   EV  LS+KI+ GL L   + 
Sbjct: 170  SVLQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229

Query: 1155 RLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGL 976
            RLK +LG EPS  Q AAS+ +S  EL + LME S+AR++L MSNVRLV+SIA++Y+N+G 
Sbjct: 230  RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289

Query: 975  EIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQER 796
            ++ DLI+ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER
Sbjct: 290  DMADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349

Query: 795  VYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKS 616
            +  I + K  LE +G  P  +R+A+ LN+S   V+NA +   +V S+D +A+P  N    
Sbjct: 350  LGLIRNAKLRLEEKGVTPAVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409

Query: 615  STFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWED 436
             T   +IAD+ +++ PW+ ++  AL+++V  L+  TL +RE+ I RLYYGLD E  TWED
Sbjct: 410  ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 469

Query: 435  ISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            ISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 470  ISKRIGLSRERVRQVGLVALEKLKHAAR 497


>ref|XP_002325882.1| RNA POLYMERASE SIGMA SUBUNIT 1 family protein [Populus trichocarpa]
            gi|222862757|gb|EEF00264.1| RNA POLYMERASE SIGMA SUBUNIT
            1 family protein [Populus trichocarpa]
          Length = 509

 Score =  342 bits (878), Expect = 2e-91
 Identities = 200/504 (39%), Positives = 312/504 (61%), Gaps = 11/504 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G+S+GKRLL++SF + ++++     +D G++   T     +IV A+K +N   
Sbjct: 2    MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIV-AKKSSNYGP 60

Query: 1659 RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTML 1480
                  +   + +  +  V  A+A    +      D  E+++  L  S+E+L++++K+ML
Sbjct: 61   SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML 120

Query: 1479 EKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKS-TEGCYKGDVMN-KI 1324
            EKQW        S+D +  K   ++ V     SAR+RR+ +RRK+  +  +     + K 
Sbjct: 121  EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF 180

Query: 1323 LRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKA 1144
            LR      +L +    + +G  +        VL   EV  LS+ I+ GL     + RLK 
Sbjct: 181  LRSVSSPDLLQNRLKGYVKGVVSDE------VLPHTEVVRLSRIIRAGLSFEDHKSRLKE 234

Query: 1143 KLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGD 964
            +LG EPS  Q A S+ +S  +L +KL++ S+AR++L MSNVRLV+SIA+KY+N+G E+ D
Sbjct: 235  RLGCEPSDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMAD 294

Query: 963  LIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQI 784
            L++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H+ ER+  I
Sbjct: 295  LVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLI 354

Query: 783  LSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQ 604
             + K  LE +G  P+ +R+A++LN+S   V+NA +   +V S+D +A+P  N     T  
Sbjct: 355  RNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHH 414

Query: 603  DFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQ 424
             +IAD+  ++ PW+ ++  AL+E+V  L++STL +RE+ I RLY+GLD E  TWEDISK+
Sbjct: 415  SYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKR 474

Query: 423  LGLSRERVRQIGIVSMEKLKHTMR 352
            +GLSRERVRQ+G+V++EKLKH  R
Sbjct: 475  MGLSRERVRQVGLVALEKLKHAAR 498


>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
            gi|482570853|gb|EOA35041.1| hypothetical protein
            CARUB_v10020145mg [Capsella rubella]
          Length = 521

 Score =  342 bits (877), Expect = 3e-91
 Identities = 207/526 (39%), Positives = 313/526 (59%), Gaps = 33/526 (6%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 1666
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +++
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASSS 57

Query: 1665 RT------RKKKHRQYLKASRDFEGLVPCATAELIASVET----SASDKE-----EDDNK 1531
                       +H Q  KA  +        + +++AS E     + +DKE      DD+ 
Sbjct: 58   SNYSPSFPSSNRHTQSAKAVTE--------SVDVVASTEQPWVPNVTDKEFEEGGYDDDV 109

Query: 1530 HLQQSLESLMIMEKTMLEKQWE-EYSNDGSEDKEASEVVRSHKP--------SARERRLA 1378
             +  S+E+L++++K+MLEK W   +    S +      +R  K         SAR+RR+ 
Sbjct: 110  LIGHSVEALLLLQKSMLEKSWNLSFEKAASSESSGKRTIRKKKVPVITCSGISARQRRIG 169

Query: 1377 SRRKSTEGCYKG--DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYT--VLKREEV 1210
            +++K+     K   DV +      K+ R ++ S +F          K   +  VL   EV
Sbjct: 170  AKKKTNMTSAKAVSDVSS-----GKQVRSVMSSELFQHNRVRGGYVKGVISEDVLSHTEV 224

Query: 1209 TWLSQKIQCGLHLHRIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKM 1030
              LS+KI+ GL L   + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L M
Sbjct: 225  VRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAISLKISRAELQAWLMECHLAREKLAM 284

Query: 1029 SNVRLVLSIARKYENLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITR 850
            SNVRLV+SIA++Y+NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++R
Sbjct: 285  SNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSR 344

Query: 849  ALADHSKTTQGAGHMQERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNK 670
            AL D+S+T +   H+ ER+  I + K  L+ +G  P+ +R+A++LN+S   V+NA +   
Sbjct: 345  ALVDNSRTLRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS 404

Query: 669  RVVSMDMQAYPKSNLGKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQ 490
            ++ S+D  A+P  N     T   +IAD+ +++ PW+  +  AL+E+V  L+ +TL +RE+
Sbjct: 405  KIFSLDRDAFPSLNGLPGETHHSYIADNRLENNPWHGYDELALKEEVSKLITATLGERER 464

Query: 489  MITRLYYGLDTENQTWEDISKQLGLSRERVRQIGIVSMEKLKHTMR 352
             I RLYYGLD E  TWEDISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 465  EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 510


>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
          Length = 502

 Score =  342 bits (877), Expect = 3e-91
 Identities = 203/512 (39%), Positives = 302/512 (58%), Gaps = 19/512 (3%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 1666
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 1665 RTR---KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 1495
            R       +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   RPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 1494 EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 1342
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 1341 --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 1168
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHAEVVRLSKKIKSGLRLD 219

Query: 1167 RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 988
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 987  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 808
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 807  MQERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSN 628
            + ER+  I + K  L+ +G  P+ +R+A++LN+S   V+NA +   +V S+D  A+P  N
Sbjct: 340  LHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLN 399

Query: 627  LGKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQ 448
                 T   +IAD  +++ PW+  +  AL+E+V  L+ +TL +RE+ I RLYYGLD E  
Sbjct: 400  GLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL 459

Query: 447  TWEDISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            TWEDISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 460  TWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  342 bits (876), Expect = 4e-91
 Identities = 202/504 (40%), Positives = 307/504 (60%), Gaps = 9/504 (1%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF----HDQGMSTITTLPRYGIIVCARKVTNAR 1663
            M TAA++G+SAG RLL +S  + +V++      +D G     + P   +I  A+K +N  
Sbjct: 73   MGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLI-SAKKPSNYT 131

Query: 1662 TRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTM 1483
                +  Q +KA ++    V  A+A   A  + S+S  E +D ++L   +E+ ++++K+M
Sbjct: 132  PSSNRSIQSMKALKEH---VESASAPSTADPDLSSSSSEVEDEEYL---VEAFLLLQKSM 185

Query: 1482 LEKQWEEYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKILRRNKRQ 1303
            LEKQW    N   + ++    V     SAR+RR++ R++         VMN+  +   R 
Sbjct: 186  LEKQW----NLSFKARQKRREVTCSGTSARQRRISGRKR---------VMNE--KSKSRV 230

Query: 1302 RVLLHSSVFHGEGANNSSRKQTYTVLKRE-----EVTWLSQKIQCGLHLHRIRQRLKAKL 1138
            R  L        G  N  +     V+  E     +V  LS KI+ GL L   + RLK ++
Sbjct: 231  RAAL--------GVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERI 282

Query: 1137 GYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDLI 958
            G EP+  Q AAS+ MS  EL +KL+E S+AR++L MSNVRLV+SIA++Y+N+G E+ DL+
Sbjct: 283  GSEPTDEQVAASLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLV 342

Query: 957  REGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQILS 778
            + GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER+  I +
Sbjct: 343  QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRN 402

Query: 777  VKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQDF 598
             K  LE +G  P+ +R+A+ LN+S   V+NA +   +V S+D +A+P  N     T   +
Sbjct: 403  AKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSY 462

Query: 597  IADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQLG 418
            IAD  +++ PW+ ++  AL+++V  L+ +TL +RE+ I RLYYGLD E  TWEDISK++G
Sbjct: 463  IADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIG 522

Query: 417  LSRERVRQIGIVSMEKLKHTMRSG 346
            LSRERVRQ+G+V++EKLK+  R G
Sbjct: 523  LSRERVRQVGLVALEKLKNAARKG 546


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  341 bits (875), Expect = 5e-91
 Identities = 198/509 (38%), Positives = 309/509 (60%), Gaps = 16/509 (3%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPFHDQGMSTIT--TLPRYGIIVCARKVTN---A 1666
            M+TAA++G+SAGKRLL+++F + ++++         +T   +     ++ A+K +N   +
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 1665 RTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKT 1486
                 ++ Q +KA ++    V  A+A   A+ +    +  E+++  L  S+E+L++++K+
Sbjct: 61   FPSSNRNTQSIKALKEH---VDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKS 117

Query: 1485 MLEKQWE------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKI 1324
            MLEKQW       + S+  S   +    V     SAR+RR+  RRK+     K  V   +
Sbjct: 118  MLEKQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQS-KFTVQANV 176

Query: 1323 LRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKRE-----EVTWLSQKIQCGLHLHRIR 1159
             ++ K        S    E   N  +     V+  E     EV  LS+ I+ GL L   +
Sbjct: 177  FKQLK--------SAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHK 228

Query: 1158 QRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLG 979
             RLK +LG +PS  Q A S+ +S  EL +K +  S+AR++L MSNVRLV+SIA++Y+N+G
Sbjct: 229  SRLKERLGCDPSDEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMG 288

Query: 978  LEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQE 799
             E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ E
Sbjct: 289  AEMADLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHE 348

Query: 798  RVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGK 619
            R+  I + K  LE +G  P+ +R+A++LNIS   V+NA +   +V S+D +A+P  N   
Sbjct: 349  RLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLP 408

Query: 618  SSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWE 439
              T   +IAD+ +++ PW+ ++  AL+++V  L+  TL +REQ I RLYYGLD E+ TWE
Sbjct: 409  GETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWE 468

Query: 438  DISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            DISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 469  DISKRIGLSRERVRQVGLVALEKLKHAAR 497


>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
            sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Citrus
            sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X3 [Citrus
            sinensis]
          Length = 508

 Score =  340 bits (873), Expect = 9e-91
 Identities = 205/508 (40%), Positives = 310/508 (61%), Gaps = 15/508 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF---HDQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G+SAGKRLL++SF + ++S+ F   +D G S  + +     +V A+K +N   
Sbjct: 2    MATAAVIGLSAGKRLLSSSFYYSDISEKFSYINDLG-SANSQVGSTKNVVAAKKSSNYNP 60

Query: 1659 R---KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEK 1489
                  +  Q +KA ++       +TAE  A    S     E+++  L  S+E+L++++K
Sbjct: 61   SFPSSNRQTQPIKALKEHVDTNFASTAEPWAEPPNSI----EEESSELDYSVEALLLLQK 116

Query: 1488 TMLEKQWE-----EYSNDGSEDKEASEV-VRSHKPSARERRLASRRKSTEGCYKGDVMNK 1327
            +MLEKQW          D    K   +V V     SAR+RRL S++K           NK
Sbjct: 117  SMLEKQWNLSFERTVLTDSPSKKTHKKVPVTCSGVSARQRRLNSKKKILS-------QNK 169

Query: 1326 ILRR---NKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQ 1156
             + +   +K+ R ++   +             +  +L   EV  LS+KI+ GL L   + 
Sbjct: 170  SVPQQNGSKQLRSMISPELIQNHLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL 229

Query: 1155 RLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGL 976
            RLK +LG EPS  Q AAS+ +S  EL + LME S+AR++L MSNVRLV+SIA++Y+N+G 
Sbjct: 230  RLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGA 289

Query: 975  EIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQER 796
            ++ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER
Sbjct: 290  DMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349

Query: 795  VYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKS 616
            +  I + K  LE +G  P+ +R+A+ LN+S   V+NA +   +V S+D +A+P  N    
Sbjct: 350  LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409

Query: 615  STFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWED 436
             T   +IAD+ +++ PW+ ++  AL+++V  L+  TL +RE+ I RLYYGLD E  TWED
Sbjct: 410  ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWED 469

Query: 435  ISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            ISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 470  ISKRIGLSRERVRQVGLVALEKLKHAAR 497


>ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
            gi|241940267|gb|EES13412.1| hypothetical protein
            SORBIDRAFT_07g004340 [Sorghum bicolor]
          Length = 500

 Score =  340 bits (872), Expect = 1e-90
 Identities = 199/503 (39%), Positives = 299/503 (59%), Gaps = 11/503 (2%)
 Frame = -2

Query: 1827 STAAIVGISAGKRLLNTSFTHIEVSKPFHDQGMSTITTLPRYGIIVCARKVTNARTRKKK 1648
            +T A++G+SAGKRLL TSF + +++ P     +      P+  ++      +++ +    
Sbjct: 3    ATPAMIGLSAGKRLLATSFGNTDLAPPDAHPSLQFAPAAPKLTVVAHRASASSSSSSSSP 62

Query: 1647 ----HRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNK---HLQQSLESLMIMEK 1489
                    ++A R+           L      +A    E D++    L+ SLE+++++++
Sbjct: 63   AGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEAIVLLQR 122

Query: 1488 TMLEKQWEEYSNDGSEDKE----ASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKIL 1321
            +MLEKQW+    D  ED E    A+ VV     SAR+RR++ RR+   G     V  +++
Sbjct: 123  SMLEKQWQLPFEDEDEDDERLTKAAVVVARSGVSARQRRMSGRRRGP-GRKSVTVSPELM 181

Query: 1320 RRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKAK 1141
            +   R R+ L  +V             +  +L  ++V  LS+KI+ G+ L   R +LK K
Sbjct: 182  Q--SRNRIYLRGTV-------------SKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEK 226

Query: 1140 LGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDL 961
            LG EPS  Q A S+++S  EL A++ E  +AR+ L MSN+RLV+SIA+KY+NLG+E+ DL
Sbjct: 227  LGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADL 286

Query: 960  IREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQIL 781
            I+ GL GL RGIEKFD S+G+  STYVYWWIRQ ++RALAD+SK  +   ++ ER+  I 
Sbjct: 287  IQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIR 346

Query: 780  SVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQD 601
              K  LE QG APT E +A++LNIS   V NA +   +V+S+D QA+P  N     T   
Sbjct: 347  GAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHS 406

Query: 600  FIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQL 421
            +I D ++ + PW+  E   L+E+V +L+ STL +RE+ I RLY+G+  +  TWEDIS+Q 
Sbjct: 407  YIEDQNVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQF 466

Query: 420  GLSRERVRQIGIVSMEKLKHTMR 352
            GLSRERVRQ+G+V+MEKLKH  R
Sbjct: 467  GLSRERVRQVGLVAMEKLKHAAR 489


>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
            polymerase sigma factor sigA; Short=Sigma factor A;
            Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
            sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
            Full=RNA polymerase sigma factor sig2; Short=Atsig2;
            Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
            factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
            Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
            polymerase sigma subunit 1 [Arabidopsis thaliana]
            gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
            thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
            thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
            polymerase sigma factor [Arabidopsis thaliana]
            gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis
            thaliana] gi|17064900|gb|AAL32604.1| RNA polymerase sigma
            subunit 1 [Arabidopsis thaliana]
            gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1
            [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
            AT1G64860 [Arabidopsis thaliana]
            gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
            1 [Arabidopsis thaliana]
          Length = 502

 Score =  340 bits (871), Expect = 2e-90
 Identities = 202/512 (39%), Positives = 302/512 (58%), Gaps = 19/512 (3%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 1669
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 1668 --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 1495
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 1494 EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 1342
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 1341 --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 1168
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 1167 RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 988
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 987  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 808
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 807  MQERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSN 628
            + ER+  I + K  L+ +G  P+ +R+A++LN+S   V+NA +   +V S+D  A+P  N
Sbjct: 340  LHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLN 399

Query: 627  LGKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQ 448
                 T   +IAD  +++ PW+  +  AL+E+V  L+ +TL +RE+ I RLYYGLD E  
Sbjct: 400  GLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL 459

Query: 447  TWEDISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            TWEDISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 460  TWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491


>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
            gi|557097090|gb|ESQ37598.1| hypothetical protein
            EUTSA_v10002486mg [Eutrema salsugineum]
          Length = 519

 Score =  340 bits (871), Expect = 2e-90
 Identities = 204/517 (39%), Positives = 313/517 (60%), Gaps = 24/517 (4%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTNA 1666
            M+TAA++G++AGKRLL++SF + +V++ F     H      I +  R GI   A+K  ++
Sbjct: 2    MATAAVIGLNAGKRLLSSSFYYSDVTEKFLSVNDHCSSQYHIAST-RSGIT--AKKTPSS 58

Query: 1665 RTR-------KKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKH---LQQS 1516
             +          +H Q  KA ++   +V  +    +       SDKE +   +   L  S
Sbjct: 59   SSNYSPSLPSSSRHTQSAKALKETVDVVASSVQPWLPP----GSDKEMEGESYEDDLGHS 114

Query: 1515 LESLMIMEKTMLEKQWEEYSNDG--SEDKEASEVVRSHKP------SARERRLASRRKST 1360
            +E+L++++K+MLEKQW         SE      + R   P      SAR+RR+ +++K+ 
Sbjct: 115  VEALLLLQKSMLEKQWNLSFEKAATSESPSKKRMTRKKNPVTCSGISARQRRIGAKKKTN 174

Query: 1359 EGCYKGDVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQ-TYTVLKREEVTWLSQKIQC 1183
                K  V++++    K+ + +++S +F         R   +  VL   EV  LS+KI+ 
Sbjct: 175  MSHVK--VVSEV-SSGKQVKSVINSELFQNNRVKGYVRGVVSEDVLSHAEVVRLSKKIKS 231

Query: 1182 GLHLHRIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSI 1003
            GL L   + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SI
Sbjct: 232  GLRLDDHKSRLKDRLGCEPSDEQLAISLKISRGELQAWLMECHLAREKLAMSNVRLVMSI 291

Query: 1002 ARKYENLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTT 823
            A++Y+N+G E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T 
Sbjct: 292  AQRYDNMGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTL 351

Query: 822  QGAGHMQERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQA 643
            +   H+ ER+  I + K  L+ +G  P+ +R+A++LN+S   V+NA +   ++ S+D  A
Sbjct: 352  RLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRDA 411

Query: 642  YPKSNLGKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGL 463
            +P  N     T   +IAD+ +++ PW+  +  AL+++V  L+ +TL +RE+ I RLYYGL
Sbjct: 412  FPSLNGLPGETHHSYIADNRLENNPWHGYDEWALKDEVSKLISATLGEREREIIRLYYGL 471

Query: 462  DTENQTWEDISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            D E  TWEDISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 472  DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 508


>gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
          Length = 502

 Score =  339 bits (869), Expect = 3e-90
 Identities = 202/512 (39%), Positives = 301/512 (58%), Gaps = 19/512 (3%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 1669
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 1668 --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 1495
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 1494 EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 1342
            +K+MLEK W          EY   G+  K+   V+     SAR+RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHVKA 177

Query: 1341 --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 1168
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 1167 RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 988
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y 
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYN 279

Query: 987  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 808
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 807  MQERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSN 628
            + ER+  I + K  L+ +G  P+ +R+A++LN+S   V+NA +   +V S+D  A+P  N
Sbjct: 340  LHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLN 399

Query: 627  LGKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQ 448
                 T   +IAD  +++ PW+  +  AL+E+V  L+ +TL +RE+ I RLYYGLD E  
Sbjct: 400  GLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL 459

Query: 447  TWEDISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            TWEDISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 460  TWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491


>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 502

 Score =  338 bits (868), Expect = 4e-90
 Identities = 202/512 (39%), Positives = 301/512 (58%), Gaps = 19/512 (3%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVSKPF-----HDQGMSTITTLPRYGIIVCARKVTN- 1669
            M+TAA++G++ GKRLL++SF H +V++ F     H      I +  + GI   A+K +N 
Sbjct: 1    MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIAST-KSGIT--AKKASNY 57

Query: 1668 --ARTRKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIM 1495
              +     +H Q  KA ++   +       L    +    ++  DD+  +  S+E+++++
Sbjct: 58   SPSFPSSNRHTQSAKALKESVDVASTEKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 117

Query: 1494 EKTMLEKQWE---------EYSNDGSEDKEASEVVRSHKPSARERRLASRRKSTEGCYKG 1342
            +K+MLEK W          EY   G+  K+   V+     SAR RR+ +++K+     K 
Sbjct: 118  QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARPRRIGAKKKTNMTHVKA 177

Query: 1341 --DVMNKILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLH 1168
              DV +    R   + V+                     VL   EV  LS+KI+ GL L 
Sbjct: 178  VSDVSSGKQVRGYVKGVISED------------------VLSHVEVVRLSKKIKSGLRLD 219

Query: 1167 RIRQRLKAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYE 988
              + RLK +LG EPS  Q A S+ +S  EL A LME  +AR++L MSNVRLV+SIA++Y+
Sbjct: 220  DHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYD 279

Query: 987  NLGLEIGDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGH 808
            NLG E+ DL++ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL D+S+T +   H
Sbjct: 280  NLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTH 339

Query: 807  MQERVYQILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSN 628
            + ER+  I + K  L+ +G  P+ +R+A++LN+S   V+NA +   +V S+D  A+P  N
Sbjct: 340  LHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLN 399

Query: 627  LGKSSTFQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQ 448
                 T   +IAD  +++ PW+  +  AL+E+V  L+ +TL +RE+ I RLYYGLD E  
Sbjct: 400  GLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECL 459

Query: 447  TWEDISKQLGLSRERVRQIGIVSMEKLKHTMR 352
            TWEDISK++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 460  TWEDISKRIGLSRERVRQVGLVALEKLKHAAR 491


>ref|XP_004972754.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Setaria
            italica] gi|514793183|ref|XP_004972755.1| PREDICTED: RNA
            polymerase sigma factor sigA-like isoform X2 [Setaria
            italica]
          Length = 499

 Score =  338 bits (867), Expect = 5e-90
 Identities = 198/502 (39%), Positives = 297/502 (59%), Gaps = 10/502 (1%)
 Frame = -2

Query: 1827 STAAIVGISAGKRLLNTSF-THIEVSKPFHDQGMSTITTLPRYGIIVCARKVTNARTRKK 1651
            +T A++G+SAG RLL  SF    +++ P     +      P+  ++V  R   ++     
Sbjct: 3    ATPAVIGLSAGNRLLAASFGPAADLAPPDAHPSLQFAPAAPKLAVVVAHRASASSSYPAG 62

Query: 1650 KHRQY-LKASRDFEGLVPCATAELIASVETSASDKEEDDNKHLQQSLESLMIMEKTMLEK 1474
              R + ++A R+                + +A   + D     + SLE++++++++MLEK
Sbjct: 63   HARAHAVRALRNHSAPALAPPPPPPPPEDPAALAPDLDSAFEFESSLEAIVLLQRSMLEK 122

Query: 1473 QWEEYSNDGSEDKEASE--------VVRSHKPSARERRLASRRKSTEGCYKGDVMNKILR 1318
            QWE    D  E++  SE        VV     SAR+RR++ RR+ T G     +  ++++
Sbjct: 123  QWELPFEDEDEEEHHSESLFAKSTVVVARSGVSARQRRMSGRRRGT-GRKSVAISPELMQ 181

Query: 1317 RNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKAKL 1138
               R R+ L  +V             +  +L  ++V  LS+KI+ G+ L   R +LK KL
Sbjct: 182  --SRNRIYLRGTV-------------SKELLTHKQVVQLSKKIKDGIWLQHQRSKLKEKL 226

Query: 1137 GYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDLI 958
            G EPS  Q A S+ +S  EL A++ E  +AR+ L MSN+RLV+SIA+KY+NLG+E+ DLI
Sbjct: 227  GNEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLI 286

Query: 957  REGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQILS 778
            + GL GL RGIEKFD S+G+  STYVYWWIRQ ++RALA++SKT +   ++ ER+  I S
Sbjct: 287  QGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRS 346

Query: 777  VKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQDF 598
             K  LE QG APT E +A +LNIS   V NA +   +V+S+D QA+P  N     T   +
Sbjct: 347  AKYALEDQGIAPTTENIAGSLNISEKKVNNATEAVNKVLSLDQQAFPSLNGLPGETLHSY 406

Query: 597  IADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQLG 418
            I D+++ + PW+  E   L+E+V +L+ STL +RE+ I RLY+G+  +  TWEDIS+Q G
Sbjct: 407  IEDENVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIGKQCHTWEDISRQFG 466

Query: 417  LSRERVRQIGIVSMEKLKHTMR 352
            LSRERVRQ+G+V+MEKLKH  R
Sbjct: 467  LSRERVRQVGLVAMEKLKHAAR 488


>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
          Length = 512

 Score =  338 bits (867), Expect = 5e-90
 Identities = 199/506 (39%), Positives = 307/506 (60%), Gaps = 13/506 (2%)
 Frame = -2

Query: 1830 MSTAAIVGISAGKRLLNTSFTHIEVS-KPFH--DQGMSTITTLPRYGIIVCARKVTNART 1660
            M+TAA++G+S GKRLLN+SF + +++ K FH  D              +V ARK +N  +
Sbjct: 2    MATAAVIGLSTGKRLLNSSFYYSDITEKLFHLNDHHGFLHCHFSSTKNVVTARKPSNCSS 61

Query: 1659 RKKKHRQYLKASRDFEGLVPCATAELIASVETSASDKE-EDDNKHLQQSLESLMIMEKTM 1483
            R     +  ++ R  +  V  A+A   A+ +      + E+++  L+ S+E+L++++K+M
Sbjct: 62   RFPSSNRPQQSIRALKEHVQTASAPSSATQQWFQELNDLEEESSDLEYSVEALLLLQKSM 121

Query: 1482 LEKQW------EEYSNDGSEDKEASEVVRSHKPSARERRLASRRKST---EGCYKGDVMN 1330
            LEKQW      +   +  S+  +    V     SAR+RR+ S ++ T     C      N
Sbjct: 122  LEKQWNLSFEKKVLRDSTSKTTDKKIPVTCSGVSARQRRMTSTKRKTFNKSTCVMHPSTN 181

Query: 1329 KILRRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRL 1150
            K LR      +L +    + +G  +        +L   EV  LS+KI+ GL +   + RL
Sbjct: 182  KPLRAIVSPELLQNHVKGYVKGVLSED------LLTHTEVVRLSKKIKVGLSVEEHKSRL 235

Query: 1149 KAKLGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEI 970
            K +LG EPS  Q A S+ +S  +L +KL+E  +AR++L MSNVRLV+SIA++Y+N+G E+
Sbjct: 236  KERLGCEPSDEQLATSLRISRAQLQSKLIECKLAREKLAMSNVRLVMSIAQRYDNMGAEM 295

Query: 969  GDLIREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVY 790
             DLI+ GL GL RGIEKFD SKG+  STYVYWWIRQ ++RAL ++S+T +   H+ ER+ 
Sbjct: 296  ADLIQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 355

Query: 789  QILSVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSST 610
             I + K  LE +G  P+ +R+A++LN+S   V+NA +   +V S+D  A+P  N     T
Sbjct: 356  LIRNAKIRLEEKGITPSIDRIAESLNMSKKKVRNATEAISKVFSLDRDAFPSLNGLPGET 415

Query: 609  FQDFIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDIS 430
               +IAD+ +++ PW+ ++  AL+E+V  L+   L +RE+ I +LYYGL+ E  TWEDIS
Sbjct: 416  HHSYIADNRLENIPWHGVDAWALKEEVSKLINMMLGEREKEIIQLYYGLENECLTWEDIS 475

Query: 429  KQLGLSRERVRQIGIVSMEKLKHTMR 352
            K++GLSRERVRQ+G+V++EKLKH  R
Sbjct: 476  KRIGLSRERVRQVGLVALEKLKHAAR 501


>emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
          Length = 500

 Score =  338 bits (867), Expect = 5e-90
 Identities = 198/503 (39%), Positives = 298/503 (59%), Gaps = 11/503 (2%)
 Frame = -2

Query: 1827 STAAIVGISAGKRLLNTSFTHIEVSKPFHDQGMSTITTLPRYGIIVCARKVTNARTRKKK 1648
            +T A++G+SAGKRLL TSF + +++ P     +      P+  ++      +++ +    
Sbjct: 3    ATPAMIGLSAGKRLLATSFGNTDLAPPDAHPSLQFAPAAPKLTVVAHRASASSSSSSSSP 62

Query: 1647 ----HRQYLKASRDFEGLVPCATAELIASVETSASDKEEDDNK---HLQQSLESLMIMEK 1489
                    ++A R+           L      +A    E D++    L+ SLE+++++++
Sbjct: 63   AGHARAHAIRALRNHSAPALAPPLPLPLPPPPAADPAPELDSEFEFELESSLEAIVLLQR 122

Query: 1488 TMLEKQWEEYSNDGSEDKE----ASEVVRSHKPSARERRLASRRKSTEGCYKGDVMNKIL 1321
            +MLEKQW+    D  ED E    A+ VV     SAR+RR++ RR+   G     V  +++
Sbjct: 123  SMLEKQWQLPFEDEDEDDERLTKAAVVVARSGVSARQRRMSGRRRGP-GRKSVTVSPELM 181

Query: 1320 RRNKRQRVLLHSSVFHGEGANNSSRKQTYTVLKREEVTWLSQKIQCGLHLHRIRQRLKAK 1141
            +   R R+ L  +V             +  +L  ++V  LS+KI+ G+ L   R +LK K
Sbjct: 182  Q--SRNRIYLRGTV-------------SKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEK 226

Query: 1140 LGYEPSKAQWAASMNMSLVELNAKLMEYSMARDELKMSNVRLVLSIARKYENLGLEIGDL 961
            LG EPS  Q A S+++S  EL A++ E  +AR+ L MSN+RLV+SIA+KY+NLG+E+ DL
Sbjct: 227  LGNEPSYKQLAQSLHISPPELRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADL 286

Query: 960  IREGLAGLSRGIEKFDPSKGYNFSTYVYWWIRQSITRALADHSKTTQGAGHMQERVYQIL 781
            I+ GL GL RGIEKFD S+G+  STYVYWWIRQ ++RALAD+SK  +   ++ ER+  I 
Sbjct: 287  IQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALADNSKAFRLPTYLHERLIAIR 346

Query: 780  SVKQELESQGTAPTNERVAKALNISSLMVKNAMKTNKRVVSMDMQAYPKSNLGKSSTFQD 601
              K  LE QG APT E +A++LNIS   V NA +   +V+S+D QA+P  N     T   
Sbjct: 347  GAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQAFPSLNGLPGDTLHS 406

Query: 600  FIADDSIDSQPWYAIEGDALREDVKDLLESTLTKREQMITRLYYGLDTENQTWEDISKQL 421
            +I D ++ + PW+  E   L+E+V +L+ S L +RE+ I RLY+G+  +  TWEDIS+Q 
Sbjct: 407  YIEDQNVANDPWHGFEERYLKEEVNNLINSNLNERERDIIRLYHGIGKQCHTWEDISRQF 466

Query: 420  GLSRERVRQIGIVSMEKLKHTMR 352
            GLSRERVRQ+G+V+MEKLKH  R
Sbjct: 467  GLSRERVRQVGLVAMEKLKHAAR 489