BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00001985
         (3099 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [A...   904   0.0  
gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic...   902   0.0  
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   902   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   902   0.0  
gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus pe...   902   0.0  
dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa...   901   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...   901   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...   901   0.0  
ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [A...   898   0.0  
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                      897   0.0  
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]         895   0.0  
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...   892   0.0  
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...   890   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   890   0.0  
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...   889   0.0  
ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B, c...   886   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...   886   0.0  
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...   883   0.0  
ref|XP_004491959.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   882   0.0  
ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2, ch...   882   0.0  

>ref|XP_006857036.1| hypothetical protein AMTR_s00065p00022170 [Amborella trichopoda]
            gi|548861119|gb|ERN18503.1| hypothetical protein
            AMTR_s00065p00022170 [Amborella trichopoda]
          Length = 987

 Score =  904 bits (2335), Expect = 0.0
 Identities = 446/742 (60%), Positives = 563/742 (75%), Gaps = 1/742 (0%)
 Frame = -2

Query: 2846 EAVRRKEIDMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLR 2667
            E  + K   +RRRQVK+ETEAW+ A  EY+ L  EMC  KLAPN+PY++SLFLGWF+PLR
Sbjct: 143  EMSKTKFNGLRRRQVKIETEAWERAVREYRELISEMCEQKLAPNLPYMKSLFLGWFEPLR 202

Query: 2666 NAISDVQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVL 2487
            +AI++ Q               +  Y+ LL AD MAVI MHK+  L+MTG+D   SV V+
Sbjct: 203  DAIAEEQALQETKRAKTG----YAPYIGLLTADKMAVIVMHKLMGLMMTGQDCG-SVRVV 257

Query: 2486 QAALKLGEAVEQEVRVHKFLEDTXXXXXXXXXXXQADTS-NLNDEYLQQKITKLLKRSKG 2310
            QAA ++GEAVE E R+H FLE T           +   S +   E L++++T L+K  K 
Sbjct: 258  QAACQIGEAVEHEARIHDFLEKTKKKSRRGKKVGEESESLSKEQENLRKRVTNLMKMQKL 317

Query: 2309 RIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIF 2130
            R VR ++ + D    W    HAK+GS L+++ I+TAYIQPP DQ  + PPEIRPAF+H F
Sbjct: 318  REVRKLVRQGDDVKPWGQDAHAKLGSRLIELFIKTAYIQPPVDQQAEGPPEIRPAFRHTF 377

Query: 2129 KTSMDEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLP 1950
            +T   + +K  +R GVIECDPLV +GL++ ARHMVT YTPMLI+P  W+GY+KG YL LP
Sbjct: 378  RTFTKDRQKFCRRYGVIECDPLVHKGLDKTARHMVTAYTPMLIRPKPWRGYDKGGYLVLP 437

Query: 1949 SHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFG 1770
            S +MRIHG+++QREA+KNVP+ Q+Q V++ALD LGSTKWR+N++IL VV  +WA GGG  
Sbjct: 438  SQIMRIHGAKQQREAVKNVPQKQLQNVFEALDTLGSTKWRVNKRILDVVNRVWARGGGIA 497

Query: 1769 DIITRKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEE 1590
             ++ R+DV LPEKP  EDE+EI+KW+    +A++ N   +S+RCDLELKLSVARKM++EE
Sbjct: 498  GLVDREDVLLPEKPDTEDEMEIRKWRWSVKKAKKVNSERHSQRCDLELKLSVARKMREEE 557

Query: 1589 CFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSG 1410
             FYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLG+ GL W KIHLANLY  G
Sbjct: 558  GFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWSKIHLANLYACG 617

Query: 1409 VDKLSFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAE 1230
            VDKLS+DGR+AFVE+++++IF+SAE+PLEGKRWWL AEDP Q LAACM+L +A+K  + E
Sbjct: 618  VDKLSYDGRLAFVENHLDDIFDSAERPLEGKRWWLNAEDPFQCLAACMNLFEALKSPTPE 677

Query: 1229 SFICHIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDA 1050
            + I H+PVHQDGSCNGLQHYAALGRD+LGA AVNL   EKPAD+YSG+AARV  I++RD+
Sbjct: 678  NVISHMPVHQDGSCNGLQHYAALGRDRLGAAAVNLVAGEKPADVYSGIAARVLEIMKRDS 737

Query: 1049 LNDEATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNE 870
                A+  NA  A+ L+ Q++RKLVKQTVMTSVYGVTYIGAR+QI +RLKERG   D ++
Sbjct: 738  EKGPASNPNAFLARALVDQVDRKLVKQTVMTSVYGVTYIGARDQICRRLKERGHITDDSQ 797

Query: 869  LFKVSSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQK 690
            LF+ S Y A+VTLTALGE F+AAR+IM WL DCAK IASENE VRWT+ +GLP+VQPY+K
Sbjct: 798  LFRASCYAAKVTLTALGETFQAARNIMSWLGDCAKVIASENEPVRWTTPLGLPVVQPYRK 857

Query: 689  KSNRMVRTSLQTLALPEECDKV 624
             +  +V+TSLQ LAL  E + V
Sbjct: 858  FARHLVKTSLQVLALQRESNSV 879


>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score =  902 bits (2332), Expect = 0.0
 Identities = 447/740 (60%), Positives = 555/740 (75%), Gaps = 4/740 (0%)
 Frame = -2

Query: 2831 KEIDMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISD 2652
            K + +R+RQ+++ETEAW+ A +EY+ L  +MC  KLAPN+PYV+SLFL WF+PLR+ I  
Sbjct: 165  KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLRDQIIA 224

Query: 2651 VQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALK 2472
             Q               H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA +
Sbjct: 225  EQELVSERGTRAS----HAPYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQ 279

Query: 2471 LGEAVEQEVRVHKFLEDTXXXXXXXXXXXQ----ADTSNLNDEYLQQKITKLLKRSKGRI 2304
            +GEAVE EVR+HKFLE T                AD +    E L++K+T L+K+ K R 
Sbjct: 280  IGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAK-EQERLRKKVTDLMKKQKIRQ 338

Query: 2303 VRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKT 2124
            VR ++ K D +  W    HAKVGS L+++ I+TA+IQPP  QS    PEIRPAF H  +T
Sbjct: 339  VRHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRT 398

Query: 2123 SMDEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSH 1944
               E RK ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P  W GY+KG +LFLPS+
Sbjct: 399  VAREQRK-SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSY 457

Query: 1943 VMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDI 1764
            VMR HG+R+QREA+K  PK QMQ +++ALD LGSTKWR+N+++L +V+ IW+ GG   D+
Sbjct: 458  VMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADL 517

Query: 1763 ITRKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECF 1584
            + R DV LPEKP  EDE E+KKW+     AE++N   +S+RCD+ELKL+VARKMK+E  F
Sbjct: 518  VDRADVSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGF 577

Query: 1583 YYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVD 1404
            YYPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEF+EGRPLG  GL WLKIHLANLYG GVD
Sbjct: 578  YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVD 637

Query: 1403 KLSFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESF 1224
            KLS+DGR+AF E+++++IF+SA +PLEGKRWWL+AEDP Q LA CMDL++A++  S E+ 
Sbjct: 638  KLSYDGRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETV 697

Query: 1223 ICHIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALN 1044
            I HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+AARV  I++RDA  
Sbjct: 698  ISHIPVHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQK 757

Query: 1043 DEATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELF 864
            D A   +A  A++L+ Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKERG   D +ELF
Sbjct: 758  DPAKDADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELF 817

Query: 863  KVSSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKS 684
              S Y A+VTLTALGEMFEAAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K  
Sbjct: 818  GASCYAAKVTLTALGEMFEAARSIMTWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLG 877

Query: 683  NRMVRTSLQTLALPEECDKV 624
              +++TSLQ L L  E DKV
Sbjct: 878  RHLIKTSLQVLTLQRETDKV 897


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Brachypodium
            distachyon]
          Length = 992

 Score =  902 bits (2331), Expect = 0.0
 Identities = 446/735 (60%), Positives = 552/735 (75%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +R+RQV++ETEAW+ A +EY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I   Q  
Sbjct: 155  LRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQEL 214

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 215  VGERGARAS----HAPYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 269

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQ-ADTSNLNDEY--LQQKITKLLKRSKGRIVRDIL 2289
            +E EVR+HKFLE T             A  S++  E   L++K+T L+K+ K R VR+I+
Sbjct: 270  IEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVRNIV 329

Query: 2288 SKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEI 2109
             K D +  W    HAKVGS L+++LI+TA+IQPP  QS    P+IRPAF H  +T   E 
Sbjct: 330  KKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVTREQ 389

Query: 2108 RKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIH 1929
            +K ++R GVI+CDPL++QGL+R A+HMV PY PMLI P +W GY+KG +LFLPS+VMR H
Sbjct: 390  QKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTH 449

Query: 1928 GSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKD 1749
            G+R+QREA+K  PK QMQ +++ALD LGSTKWRIN+K+L +V+ IW+ GG   D++ R D
Sbjct: 450  GARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLVDRTD 509

Query: 1748 VPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHN 1569
            V LPEKP  EDE E+KKW+      +++N   +S+RCD+ELKL+VARKMKDE  FYYPHN
Sbjct: 510  VALPEKPDTEDETELKKWRWNLRSVKKENSERHSQRCDVELKLAVARKMKDEVGFYYPHN 569

Query: 1568 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFD 1389
            LDFRGRAYPMHP+LNHLGSDLCRG+LEF+EGRPLG  GL WLKIHLANLY  GVDKLS+D
Sbjct: 570  LDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDKLSYD 629

Query: 1388 GRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIP 1209
            GR+AF E+++ +IF+SA +PLEGKRWWL AEDP Q LA CMDL +A++ SS E+ I HIP
Sbjct: 630  GRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMISHIP 689

Query: 1208 VHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATF 1029
            VHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+A RV  I+RRDA  D A  
Sbjct: 690  VHQDGSCNGLQHYAALGRDKLGAIAVNLVSGEKPADVYSGIATRVVEIMRRDAQKDPALD 749

Query: 1028 ENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSY 849
             +A  A++L+ Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKERG   D +ELF  S Y
Sbjct: 750  PDAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIGDDSELFAASCY 809

Query: 848  CAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVR 669
             A+VTLTALGEMFEAAR IM WL DCAK IA ENE VRW + +GLP+VQPY+K    +++
Sbjct: 810  AAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWMTPLGLPVVQPYRKLGRHLIK 869

Query: 668  TSLQTLALPEECDKV 624
            TSLQ L L  E DKV
Sbjct: 870  TSLQVLTLQRETDKV 884


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score =  902 bits (2330), Expect = 0.0
 Identities = 444/736 (60%), Positives = 555/736 (75%), Gaps = 4/736 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQV++ETEAW+ A +EY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I   Q  
Sbjct: 2    LRRRQVQIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDL 61

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 62   VCERRARAS----HARYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 116

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQ----ADTSNLNDEYLQQKITKLLKRSKGRIVRDI 2292
            +E EVR+HKFLE             +    +D +    E L++K+T L+K+ K R VR I
Sbjct: 117  IEHEVRLHKFLEKPKKKRSKEMDNEEEVGCSDIAK-EQERLRKKVTDLMKKHKLRQVRYI 175

Query: 2291 LSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDE 2112
            + K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+IRPAF H  +T   E
Sbjct: 176  VKKQDNSKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKE 235

Query: 2111 IRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRI 1932
             +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P +W GY+KG +LFLPS+VMR 
Sbjct: 236  QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRT 295

Query: 1931 HGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRK 1752
            HG+R+QREA+K  P+ QMQ V++ALD LGSTKWR+N+++L +V+ IW+ GG   D++ R 
Sbjct: 296  HGARQQREAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRS 355

Query: 1751 DVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPH 1572
            DV LPEKP  EDE ++KKW+     A+++N   +S+RCD+ELKL+VARKMKDEE FYYPH
Sbjct: 356  DVALPEKPDTEDEAKLKKWRWNLKAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPH 415

Query: 1571 NLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSF 1392
            NLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+
Sbjct: 416  NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSY 475

Query: 1391 DGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHI 1212
            DGR+AF E+++ +IF+SA++PLEGKRWWL AEDP Q LA C++L +A++  S E+ I HI
Sbjct: 476  DGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHI 535

Query: 1211 PVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEAT 1032
            PVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+Y+G+A RV  I+R DAL D AT
Sbjct: 536  PVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPAT 595

Query: 1031 FENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSS 852
              +A  A+ML+ Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKER    D +ELF  S 
Sbjct: 596  DPDAARARMLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMIGDDSELFSASC 655

Query: 851  YCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMV 672
            Y A+VTLTALGEMF+AAR IM WL DCAK IA ENE V+WT+ +GLP+VQPY+K    ++
Sbjct: 656  YAAKVTLTALGEMFQAARSIMNWLGDCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLI 715

Query: 671  RTSLQTLALPEECDKV 624
            +TSLQ L L  E DKV
Sbjct: 716  KTSLQVLTLQRETDKV 731


>gb|EMJ16117.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score =  902 bits (2330), Expect = 0.0
 Identities = 437/733 (59%), Positives = 554/733 (75%), Gaps = 1/733 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            ++RRQ+K+ETEAW+ A +EY+ L ++MC  KLAPN+PY++SLFLGWF+PLRNAI   Q  
Sbjct: 189  LKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIDKEQDL 248

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         +  Y+  LPADMM+VITMHK+  LLMTG +   +  V+ AA  +GEA
Sbjct: 249  CRKGKNKTA----YAPYIDQLPADMMSVITMHKLMGLLMTGGEHG-TCRVVAAACTIGEA 303

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQ-ADTSNLNDEYLQQKITKLLKRSKGRIVRDILSK 2283
            +EQEVR+HKFLE T             +D +    E L +K+T L+K+ K + VR I+SK
Sbjct: 304  IEQEVRIHKFLEMTRKKKVDKDQENGESDAAKKEREKLNKKVTNLMKKQKLKAVRGIVSK 363

Query: 2282 SDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRK 2103
             D S SW     AKVGS L+++L QTA+IQPP DQ    PP+IRPAF H F+T   + + 
Sbjct: 364  HDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFRTVAKDAKN 423

Query: 2102 RTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGS 1923
             ++R GVIECDPLV +GLE+ ARHMV PY PML+ P  W GY+KG Y FLPS+VMRIHG+
Sbjct: 424  ASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPSYVMRIHGA 483

Query: 1922 RKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVP 1743
            R+QREA+K  P+ Q++ V++ALD LG+T+WR+N+++L VV+ IWA GG   D++ R DVP
Sbjct: 484  RQQREAIKRTPREQLEPVFKALDALGNTRWRVNKRVLSVVDRIWASGGHLADLVDRNDVP 543

Query: 1742 LPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHNLD 1563
            LPE+P  EDE  +KKWK +    +++NM  +S+RCD ELKL+VARKMKDEE FYYPHNLD
Sbjct: 544  LPEEPDTEDETLLKKWKWKVKSVKKENMERHSQRCDTELKLAVARKMKDEEGFYYPHNLD 603

Query: 1562 FRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGR 1383
            FRGRAYPMHP+LNHLGSD+CRGILEF EGRPLG+ GLSWLKIHLANLY  GVDKLS +GR
Sbjct: 604  FRGRAYPMHPYLNHLGSDVCRGILEFQEGRPLGKSGLSWLKIHLANLYAGGVDKLSLEGR 663

Query: 1382 MAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVH 1203
            +AF E+++++IF+S +KPLEG+RWWLKAEDP Q LA C++L +A++ SS E+FI HIPVH
Sbjct: 664  IAFTENHLDDIFDSVDKPLEGRRWWLKAEDPFQCLAVCINLAEALRSSSPETFISHIPVH 723

Query: 1202 QDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFEN 1023
            QDGSCNGLQHYAALGRDKLGA +VNL   EKPAD+YSG+A RV  I+RRDA  D   F  
Sbjct: 724  QDGSCNGLQHYAALGRDKLGAASVNLVTGEKPADVYSGIAVRVLEIMRRDAQKDPVVFPE 783

Query: 1022 ARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSYCA 843
            A  AK+L+ Q++RKLVKQTVMTSVYGVTYIGAR+QI++RLKERG+  D  E+F  + Y A
Sbjct: 784  ALRAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGSISDDAEIFGCACYAA 843

Query: 842  QVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVRTS 663
            ++TLTALGEMFEAAR IM WL +CAK IASEN+ VRWT+ +GLP+VQPY+K    +++TS
Sbjct: 844  KITLTALGEMFEAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRKFGRHLIKTS 903

Query: 662  LQTLALPEECDKV 624
            LQ L L  E +KV
Sbjct: 904  LQVLTLQRETEKV 916


>dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
            gi|48716846|dbj|BAD23544.1| putative phage-type RNA
            polymerase [Oryza sativa Japonica Group]
            gi|215694941|dbj|BAG90132.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 951

 Score =  901 bits (2329), Expect = 0.0
 Identities = 440/735 (59%), Positives = 555/735 (75%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+++ETEAW+ A EEY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I   Q  
Sbjct: 180  LRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQEL 239

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 240  VGERGARAS----HARYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 294

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQADTSN---LNDEYLQQKITKLLKRSKGRIVRDIL 2289
            +E EVR+HKFLE T           +    +      E L++K+T L+K+ K R VR+I+
Sbjct: 295  IEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIV 354

Query: 2288 SKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEI 2109
             K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+IRPAF H  +T   E 
Sbjct: 355  KKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQ 414

Query: 2108 RKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIH 1929
            +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P +W GY+KG +LFLPS+VMR H
Sbjct: 415  QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTH 474

Query: 1928 GSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKD 1749
            G+R+QR+A++  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R D
Sbjct: 475  GARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTD 534

Query: 1748 VPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHN 1569
            V LPEKP  EDE ++KKW+     A+++N   +S+RCD+ELKL+VARKMKDE+ FYYPHN
Sbjct: 535  VALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHN 594

Query: 1568 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFD 1389
            LDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+D
Sbjct: 595  LDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYD 654

Query: 1388 GRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIP 1209
            GR+AF E+++ +IF+SA++PLEGKRWWL AEDP Q LA C++L +A++  S E+ I HIP
Sbjct: 655  GRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIP 714

Query: 1208 VHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATF 1029
            VHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+Y+G+A RV  I++ DAL D AT 
Sbjct: 715  VHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATD 774

Query: 1028 ENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSY 849
             +A  A++LL Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKER    D +ELF  S Y
Sbjct: 775  PDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCY 834

Query: 848  CAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVR 669
             A+VTLTALGEMF+AAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K    +++
Sbjct: 835  AAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIK 894

Query: 668  TSLQTLALPEECDKV 624
            TSLQ L L  E DKV
Sbjct: 895  TSLQVLTLQRETDKV 909


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score =  901 bits (2329), Expect = 0.0
 Identities = 440/735 (59%), Positives = 555/735 (75%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+++ETEAW+ A EEY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I   Q  
Sbjct: 180  LRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQEL 239

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 240  VGERGARAS----HARYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 294

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQADTSN---LNDEYLQQKITKLLKRSKGRIVRDIL 2289
            +E EVR+HKFLE T           +    +      E L++K+T L+K+ K R VR+I+
Sbjct: 295  IEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIV 354

Query: 2288 SKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEI 2109
             K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+IRPAF H  +T   E 
Sbjct: 355  KKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQ 414

Query: 2108 RKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIH 1929
            +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P +W GY+KG +LFLPS+VMR H
Sbjct: 415  QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTH 474

Query: 1928 GSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKD 1749
            G+R+QR+A++  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R D
Sbjct: 475  GARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTD 534

Query: 1748 VPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHN 1569
            V LPEKP  EDE ++KKW+     A+++N   +S+RCD+ELKL+VARKMKDE+ FYYPHN
Sbjct: 535  VALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHN 594

Query: 1568 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFD 1389
            LDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+D
Sbjct: 595  LDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYD 654

Query: 1388 GRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIP 1209
            GR+AF E+++ +IF+SA++PLEGKRWWL AEDP Q LA C++L +A++  S E+ I HIP
Sbjct: 655  GRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIP 714

Query: 1208 VHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATF 1029
            VHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+Y+G+A RV  I++ DAL D AT 
Sbjct: 715  VHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATD 774

Query: 1028 ENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSY 849
             +A  A++LL Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKER    D +ELF  S Y
Sbjct: 775  PDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCY 834

Query: 848  CAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVR 669
             A+VTLTALGEMF+AAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K    +++
Sbjct: 835  AAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIK 894

Query: 668  TSLQTLALPEECDKV 624
            TSLQ L L  E DKV
Sbjct: 895  TSLQVLTLQRETDKV 909


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score =  901 bits (2329), Expect = 0.0
 Identities = 440/735 (59%), Positives = 555/735 (75%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+++ETEAW+ A EEY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I   Q  
Sbjct: 146  LRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQEL 205

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 206  VGERGARAS----HARYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 260

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQADTSN---LNDEYLQQKITKLLKRSKGRIVRDIL 2289
            +E EVR+HKFLE T           +    +      E L++K+T L+K+ K R VR+I+
Sbjct: 261  IEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIV 320

Query: 2288 SKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEI 2109
             K D S  W    HAKVGS L++++I+TAYIQPP  QS   PP+IRPAF H  +T   E 
Sbjct: 321  KKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQ 380

Query: 2108 RKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIH 1929
            +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P +W GY+KG +LFLPS+VMR H
Sbjct: 381  QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTH 440

Query: 1928 GSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKD 1749
            G+R+QR+A++  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R D
Sbjct: 441  GARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTD 500

Query: 1748 VPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHN 1569
            V LPEKP  EDE ++KKW+     A+++N   +S+RCD+ELKL+VARKMKDE+ FYYPHN
Sbjct: 501  VALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHN 560

Query: 1568 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFD 1389
            LDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+D
Sbjct: 561  LDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYD 620

Query: 1388 GRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIP 1209
            GR+AF E+++ +IF+SA++PLEGKRWWL AEDP Q LA C++L +A++  S E+ I HIP
Sbjct: 621  GRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIP 680

Query: 1208 VHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATF 1029
            VHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+Y+G+A RV  I++ DAL D AT 
Sbjct: 681  VHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATD 740

Query: 1028 ENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSY 849
             +A  A++LL Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKER    D +ELF  S Y
Sbjct: 741  PDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCY 800

Query: 848  CAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVR 669
             A+VTLTALGEMF+AAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K    +++
Sbjct: 801  AAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIK 860

Query: 668  TSLQTLALPEECDKV 624
            TSLQ L L  E DKV
Sbjct: 861  TSLQVLTLQRETDKV 875


>ref|XP_006844103.1| hypothetical protein AMTR_s00006p00254180 [Amborella trichopoda]
            gi|548846502|gb|ERN05778.1| hypothetical protein
            AMTR_s00006p00254180 [Amborella trichopoda]
          Length = 1006

 Score =  898 bits (2320), Expect = 0.0
 Identities = 461/843 (54%), Positives = 590/843 (69%), Gaps = 18/843 (2%)
 Frame = -2

Query: 3098 NKDFKGIRNDNNDEDFKGLSNPDNKYFKGIRNDNIVEDFKGLRNHDNKDFKGIGNDNYED 2919
            N  F G   D + +   GL NP        R D        L+   N     +  D  ED
Sbjct: 62   NSQFGGELQDRDGKMGNGLKNPVFFNCFNGRRDPFFLRGCSLKGFANAAEAVVSTDIDED 121

Query: 2918 NFKGSR-------IHDKNDFKAIRKDNNK---------GVEAVRRKEIDMRRRQVKMETE 2787
               GS         +  N   AIR++  K         GV   + K + +R RQVK+ETE
Sbjct: 122  CSSGSEETHLVLPTNGYNSNGAIREEREKLKPKNGYKDGVMG-KAKYLALRTRQVKIETE 180

Query: 2786 AWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXXXXXXXXXXXXX 2607
            AW  A +EY+ L ++MC  KLAPN+PY++SLFLGWF+PLR+ I+  Q             
Sbjct: 181  AWDQAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWFEPLRDIIASEQASYKAGKNKGA-- 238

Query: 2606 XTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFL 2427
              +  Y   LPADMM+VITMHK+  LLMTG D   S  ++QAA ++GEA+EQEV++H+F 
Sbjct: 239  --YAPYFMQLPADMMSVITMHKLMGLLMTGTDNG-STRLVQAACQIGEAIEQEVKIHRFF 295

Query: 2426 EDTXXXXXXXXXXXQADTS--NLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNV 2253
            E T             + +  +   E L++++T L+K+ K   VR I+   D +  W   
Sbjct: 296  EKTKKKSDKEKKLDGEEPNEGDKEKESLRKRVTNLMKKQKLHQVRKIVKGQDDAKPWGID 355

Query: 2252 THAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRKRTKRKGVIEC 2073
             HAKVGS L+++LI+TAY+QPP DQS + PP+IRPAF+HI KT     +K  +R GVIEC
Sbjct: 356  IHAKVGSRLIELLIETAYVQPPVDQSAEGPPDIRPAFRHILKTVTKNDQKIRRRYGVIEC 415

Query: 2072 DPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNV 1893
            DPL+ +GLE+ ARHMV PY PML+ P  W GY++G +LFLPS+VMRIHG+R+QR A+K+ 
Sbjct: 416  DPLICKGLEKTARHMVIPYMPMLVPPVKWTGYDRGGHLFLPSYVMRIHGARQQRYAIKHA 475

Query: 1892 PKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDE 1713
            P+ Q+ KVY+ALD LG+TKWR+N+++L V++ IWA+GG   D++ R+DV +PEKP  EDE
Sbjct: 476  PRKQLLKVYEALDTLGTTKWRVNKRVLGVIDRIWADGGRLADLVDREDVAIPEKPDTEDE 535

Query: 1712 LEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHNLDFRGRAYPMHP 1533
             +I++WK     A +KN  L+S+RCD ELKL+VAR+MKDEE F+YPHNLDFRGRAYPMHP
Sbjct: 536  AKIREWKWLVKGARKKNSELHSQRCDTELKLNVARRMKDEEGFHYPHNLDFRGRAYPMHP 595

Query: 1532 HLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINN 1353
            +LNHLGSDLCRGILEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+DGR+ FVE+++ +
Sbjct: 596  YLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLEFVENHLED 655

Query: 1352 IFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQH 1173
            IF+SA++PLEG RWWL AEDP Q LAAC++L +A++ SS ++ I H+PVHQDGSCNGLQH
Sbjct: 656  IFDSADRPLEGGRWWLGAEDPFQCLAACVNLSEALRSSSPDTTISHMPVHQDGSCNGLQH 715

Query: 1172 YAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQ 993
            YAALGRDKLGA AVNL   EKPAD+YSG+A RV  I+RRD+  D  +  N   AK+LL Q
Sbjct: 716  YAALGRDKLGAIAVNLVAGEKPADVYSGIAERVLDIMRRDSQKDPTSDPNVARAKLLLNQ 775

Query: 992  INRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSYCAQVTLTALGEM 813
            ++RKLVKQTVMTSVYGVTY+GAR+QI +RLKERGA  D+ ELF  S Y A+VTLTALGEM
Sbjct: 776  VDRKLVKQTVMTSVYGVTYVGARDQIMRRLKERGAITDEKELFSASCYTAKVTLTALGEM 835

Query: 812  FEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEEC 633
            F+AAR IM WL DCAK IASENETVRWT+ +GLP+VQPY+K    +++TSLQ LAL  E 
Sbjct: 836  FQAARSIMSWLGDCAKVIASENETVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLALRCET 895

Query: 632  DKV 624
            DKV
Sbjct: 896  DKV 898


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score =  897 bits (2317), Expect = 0.0
 Identities = 440/739 (59%), Positives = 553/739 (74%), Gaps = 3/739 (0%)
 Frame = -2

Query: 2831 KEIDMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISD 2652
            K + +R+RQ+++ETEAW+ A +EY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I  
Sbjct: 23   KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA 82

Query: 2651 VQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALK 2472
             Q               H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA +
Sbjct: 83   EQELVGERGTRAS----HAPYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQ 137

Query: 2471 LGEAVEQEVRVHKFLEDTXXXXXXXXXXXQADTSN---LNDEYLQQKITKLLKRSKGRIV 2301
            +GEAVE EVR+HKFLE T                +      + L++K+T L+K+ K R V
Sbjct: 138  IGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQV 197

Query: 2300 RDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTS 2121
            R ++ K D +  W    HAKVGS L+++ I+TA+IQPP  QS    PEIRPAF H  +T 
Sbjct: 198  RHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTV 257

Query: 2120 MDEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHV 1941
              E  ++++R GVI+CDPLV+QGL+R A+HMV PY PMLI P  W GY+KG +LFLPS+V
Sbjct: 258  ARE--QKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYV 315

Query: 1940 MRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDII 1761
            MR HG+R+QREA+K  PK QMQ +++ALD LGSTKWR+N+++L +V+ IW+ GG   D++
Sbjct: 316  MRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLV 375

Query: 1760 TRKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFY 1581
             R DV LPEKP  EDE E+KKW+     A+++N   +S+RCD+ELKL+VARKMK+E  FY
Sbjct: 376  DRADVSLPEKPDTEDEAELKKWRWSMRSAKKENSERHSQRCDVELKLAVARKMKEEVGFY 435

Query: 1580 YPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDK 1401
            +PHNLDFRGRAYPMHP+LNHLGSDLCRG+LEF+EGRPLG  GL WLKIHLANLYG GVDK
Sbjct: 436  HPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDK 495

Query: 1400 LSFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFI 1221
            LS+DGR+AF E+++ +IF+SA +PLEGKRWWL+AEDP Q LA CMDL++A++ SS E+ I
Sbjct: 496  LSYDGRIAFTENHLEDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSSSPETVI 555

Query: 1220 CHIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALND 1041
             HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+AARV  I++RDA  D
Sbjct: 556  SHIPVHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKD 615

Query: 1040 EATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFK 861
             A   +A  A++L+ Q++R+LVKQTVMTSVYGVTY+GAREQI++RLKERG   D +ELF 
Sbjct: 616  PAKDADAARARLLVDQVDRRLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFG 675

Query: 860  VSSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSN 681
             S Y A+VTLTALGEMFEAAR IM WL DCAK IA ENE VRW + +GLP+VQPY+K   
Sbjct: 676  ASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWKTPLGLPVVQPYRKLGR 735

Query: 680  RMVRTSLQTLALPEECDKV 624
             +++TSLQ L L  E DKV
Sbjct: 736  HLIKTSLQVLTLQRETDKV 754


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score =  895 bits (2312), Expect = 0.0
 Identities = 438/735 (59%), Positives = 556/735 (75%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+++ETEAW+ A  EY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I+  Q  
Sbjct: 138  LRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQEL 197

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  +  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 198  VADPGSRAS----HGPFFSMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 252

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQ--ADTS-NLNDEYLQQKITKLLKRSKGRIVRDIL 2289
            +E EVR+++FLE T           +   DT+  +  + L++K+T L+K+ K R VR+I+
Sbjct: 253  IEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAIEQQRLRKKVTDLMKKQKLRQVRNIV 312

Query: 2288 SKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEI 2109
               DKS  W    HAKVGS L+D+ I TA+IQPP  QS    P+IRPAF+H  +T + E 
Sbjct: 313  KNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQ 372

Query: 2108 RKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIH 1929
            +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P  W GY+KG +LFLPS+VMR H
Sbjct: 373  QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTH 432

Query: 1928 GSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKD 1749
            G+R+QR+A+K  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R D
Sbjct: 433  GARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTD 492

Query: 1748 VPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHN 1569
            VP+PEKP  EDE  +K WK     A++KN   +S+RCD+ELKL+VARKMKDEE FYYPHN
Sbjct: 493  VPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHN 552

Query: 1568 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFD 1389
            LDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG+ GL WLKIHLANLY +GVDKLS+D
Sbjct: 553  LDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYD 612

Query: 1388 GRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIP 1209
            GR+AF E+++  IF+SA++PLEG+RWWL AEDP Q LA CM+L +A++ SS E+ I HIP
Sbjct: 613  GRIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIP 672

Query: 1208 VHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATF 1029
            VHQDGSCNGLQHYAALG+DKLGA AVNL   EKPAD+Y+G+A RV  I+R DA  D +  
Sbjct: 673  VHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVE 732

Query: 1028 ENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSY 849
             +A  A++++ Q++RKLVKQTVMTSVYGVTYIGAREQIR+RLKERG  P+ +ELF  S Y
Sbjct: 733  PDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSELFGASCY 792

Query: 848  CAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVR 669
             A+VTLTALGEMF+AAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K    +++
Sbjct: 793  AAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIK 852

Query: 668  TSLQTLALPEECDKV 624
            TSLQ L L  E DKV
Sbjct: 853  TSLQVLTLQRETDKV 867


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score =  892 bits (2304), Expect = 0.0
 Identities = 437/739 (59%), Positives = 551/739 (74%), Gaps = 3/739 (0%)
 Frame = -2

Query: 2831 KEIDMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISD 2652
            K   +RRRQ+++ETEAW+ A +EY+ L  +MC  KLAPN+PY++SLFLGWF+PLR+ I+ 
Sbjct: 164  KYASLRRRQIRVETEAWEQAAKEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDQIAA 223

Query: 2651 VQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALK 2472
             Q               H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA +
Sbjct: 224  EQELVANRGSRAS----HGPYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQ 278

Query: 2471 LGEAVEQEVRVHKFLEDTXXXXXXXXXXXQA--DTSNLNDEY-LQQKITKLLKRSKGRIV 2301
            +GEA+E EVR+H+FLE T           +   D+    ++  L++K+T L+K+ K R V
Sbjct: 279  IGEAIEHEVRIHRFLEKTRKKSNKEKENEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQV 338

Query: 2300 RDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTS 2121
            R I+   D S  W    HAKVGS L+++ I+TA+IQPP  QS    P+IRPAF+H  +T 
Sbjct: 339  RKIVKNQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTV 398

Query: 2120 MDEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHV 1941
              E +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P  W GY+KG +LFLPS+V
Sbjct: 399  PKEQQKHSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYV 458

Query: 1940 MRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDII 1761
            MR HG+R+QREA+K  P+ QMQ V++AL+ LGSTKWR+N+++L +++ IW+ GG   D++
Sbjct: 459  MRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLV 518

Query: 1760 TRKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFY 1581
             R DVPLPEKP  EDE  +KKW+  T   ++ N   +S+RCD+ELKL+VARKMKDEE FY
Sbjct: 519  DRTDVPLPEKPDTEDETVLKKWRWHTRSVKKGNSERHSQRCDVELKLAVARKMKDEEGFY 578

Query: 1580 YPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDK 1401
            YPHNLDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG  GL WLKIHLANLY  GVDK
Sbjct: 579  YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGESGLRWLKIHLANLYAGGVDK 638

Query: 1400 LSFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFI 1221
            LS+ GR+AF E+++  IF+SA++PLEGKRWWL AEDP Q LA CM+L +A++  S E+ I
Sbjct: 639  LSYAGRIAFAENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATI 698

Query: 1220 CHIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALND 1041
             HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+A RV  I+RRD+  D
Sbjct: 699  SHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSGIATRVVEIMRRDSQKD 758

Query: 1040 EATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFK 861
             +T  +A  A+++L Q++RKLVKQTVMTSVYGVTY+GAREQI++RLKERG   D  ELF 
Sbjct: 759  PSTDPDAARARLILDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDAELFG 818

Query: 860  VSSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSN 681
             S Y A+VTLTALGEMF+AAR IM WL DCAK IA ENE V+WT+ +GLP+VQPY+K   
Sbjct: 819  ASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVKWTTPLGLPVVQPYRKLGR 878

Query: 680  RMVRTSLQTLALPEECDKV 624
             +++TSLQ L L  E DKV
Sbjct: 879  HLIKTSLQVLTLQRETDKV 897


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score =  890 bits (2301), Expect = 0.0
 Identities = 432/733 (58%), Positives = 552/733 (75%), Gaps = 1/733 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+KMETEAW+ A +EY+ L  +MC  KLAPN+PY++SLFLGWF+PLR+ I+  Q  
Sbjct: 143  LRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDL 202

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         +  Y   LPADMMAVITMHK+  LLMTG+    S  V+QAA  +GEA
Sbjct: 203  CKQGKNRAA----YAPYFDHLPADMMAVITMHKLMGLLMTGEGNG-SARVVQAACHIGEA 257

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQADTSNLND-EYLQQKITKLLKRSKGRIVRDILSK 2283
            +E EVR+ +F+E T                   + E L++K++ L+K+ K + VR I+ +
Sbjct: 258  IEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKR 317

Query: 2282 SDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEIRK 2103
             D S  W    + KVGS L+++LI+TAYIQPP DQ    PP+IRPAF H  KT + E +K
Sbjct: 318  QDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQK 377

Query: 2102 RTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGS 1923
             T+R GVIECDPLV++GLE+ ARHMV PY PML+ P  W GY+KG YLFLPS+VMRIHG+
Sbjct: 378  GTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGA 437

Query: 1922 RKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKDVP 1743
            R+QREA+K  P+  ++  ++AL+ LG+TKWRIN+++L V++ IWA GG   D++ R+DVP
Sbjct: 438  RQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVP 497

Query: 1742 LPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHNLD 1563
            LPE+P  EDE EI+KWK +    +++N   +S+RCD+ELKL+VARKMKDE+ F+YPHNLD
Sbjct: 498  LPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLD 557

Query: 1562 FRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGR 1383
            FRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG+ GL WLKIHLAN+Y  GVDKLS++GR
Sbjct: 558  FRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGR 617

Query: 1382 MAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIPVH 1203
            +AF E+++ +IF+SA++PLEG+RWWL AEDP Q LA C++L +A++ SS E+ I H+PVH
Sbjct: 618  VAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVH 677

Query: 1202 QDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATFEN 1023
            QDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+AARV  I++RDA  D AT  N
Sbjct: 678  QDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPN 737

Query: 1022 ARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSYCA 843
            A  A++L+ Q++RKLVKQTVMTSVYGVTYIGAR+QI++RLKER A  D+ E+F  S Y A
Sbjct: 738  ALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAA 797

Query: 842  QVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVRTS 663
            + TLTALGEMFEAAR IM WL DCAK IASEN  VRW + +GLP+VQPY+K    +++TS
Sbjct: 798  KTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTS 857

Query: 662  LQTLALPEECDKV 624
            LQ L+L  E DKV
Sbjct: 858  LQVLSLQRETDKV 870


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score =  890 bits (2300), Expect = 0.0
 Identities = 444/766 (57%), Positives = 563/766 (73%), Gaps = 16/766 (2%)
 Frame = -2

Query: 2873 IRKDNNKGVEAVRRKEIDM------------RRRQVKMETEAWKNATEEYKRLAIEMCSL 2730
            ++K+  + V   RR+++ M            RRRQVK+ETEAW+ A +EYK L ++MC  
Sbjct: 167  MKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQ 226

Query: 2729 KLAPNIPYVQSLFLGWFDPLRNAISDVQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVIT 2550
            KLAPN+PY++SLFLGWF+PLR+AI   Q               +  Y   LPADMM+VIT
Sbjct: 227  KLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAA----YAPYFDQLPADMMSVIT 282

Query: 2549 MHKVTTLLMTGKDKDCSVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXXXXQA--- 2379
            MHK+  LLMTG +   S  V+QAA  +G+A+EQEVR+H FLE T           +    
Sbjct: 283  MHKLVGLLMTGGEHG-STRVVQAACVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGF 341

Query: 2378 DTSNLNDEYLQQKITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAY 2199
            D      E L++K+T L+K+ K    R I+   D S  W     AKVGS L+++L+QTAY
Sbjct: 342  DPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAY 401

Query: 2198 IQPPTDQSLQD-PPEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHMVT 2022
            IQPP D  L D PP+IRPAF H FKT M E +K  +R GVIECDPLVK+GLER ARHMV 
Sbjct: 402  IQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVI 461

Query: 2021 PYTPMLIKPNTWKGYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGS 1842
            PY PML+ P  W GY+KG +LFLPS+VMR HG+R+QREA+K  P+NQ++ V++AL+ LG+
Sbjct: 462  PYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGN 521

Query: 1841 TKWRINRKILHVVESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEAERKN 1662
            TKWRIN+++  VV+ IWA GG   D++ R DVPLPEKP  EDE +++KWK +    ++ N
Sbjct: 522  TKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKAN 581

Query: 1661 MILYSRRCDLELKLSVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFA 1482
               +S+RCD+ELKL+VARKMKDE+ F+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFA
Sbjct: 582  SERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFA 641

Query: 1481 EGRPLGRRGLSWLKIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKRWWLK 1302
            EGRPLG  GL WLKIHLANL+  GVDKLS +GR+ F E+++++IF+SA++PLEGKRWWL 
Sbjct: 642  EGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLN 701

Query: 1301 AEDPLQFLAACMDLHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEAVNLT 1122
            AEDP QFLAAC++L +A++ SS E+ I HIPVHQDGSCNGLQHYAALGRD+LGA AVNL 
Sbjct: 702  AEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLV 761

Query: 1121 HQEKPADIYSGVAARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTSVYGV 942
              EKPAD+YSG+AARV  I++RDA  D A F +A  A++L+ Q++RKLVKQTVMTSVYGV
Sbjct: 762  AGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGV 821

Query: 941  TYIGAREQIRKRLKERGAFPDQNELFKVSSYCAQVTLTALGEMFEAARDIMGWLNDCAKT 762
            TYIGAR+QI++RLKER A  D  ELF  + Y A++TLTALGEMF+AAR IM WL DCAK 
Sbjct: 822  TYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKI 881

Query: 761  IASENETVRWTSSMGLPIVQPYQKKSNRMVRTSLQTLALPEECDKV 624
            IASEN+ VRWT+ +GLP+VQPY+K    +++TSLQ L L  E + +
Sbjct: 882  IASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETI 927


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
            gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
            polymerase [Zea mays]
          Length = 975

 Score =  889 bits (2297), Expect = 0.0
 Identities = 437/735 (59%), Positives = 555/735 (75%), Gaps = 3/735 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+++ETEAW+ A  EY+ L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I+  Q  
Sbjct: 138  LRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQEL 197

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  +  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 198  VADPGSRAS----HGPFFSMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 252

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQ--ADTS-NLNDEYLQQKITKLLKRSKGRIVRDIL 2289
            +E EVR+++FLE T           +   DT+  +  + L++K+T L+K+ K R VR+I+
Sbjct: 253  IEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKVTDLMKKQKLRQVRNIV 312

Query: 2288 SKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDEI 2109
               DKS  W    HAKVGS L+D+ I TA+IQPP  QS    P+IRPAF+H  +T + E 
Sbjct: 313  KNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQ 372

Query: 2108 RKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRIH 1929
            +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P  W GY+KG +LFLPS+VMR H
Sbjct: 373  QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTH 432

Query: 1928 GSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRKD 1749
            G+R+QR+A+K  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R D
Sbjct: 433  GARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTD 492

Query: 1748 VPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPHN 1569
            VP+PEKP  EDE  +K WK     A++KN   +S+RCD+ELKL+VARKMKDEE FYYPHN
Sbjct: 493  VPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHN 552

Query: 1568 LDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSFD 1389
            LDFRGRAYPMHP+LNHLGSDLCRG+LEFAEGRPLG+ GL WLKIHLANLY +GVDKLS+D
Sbjct: 553  LDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYD 612

Query: 1388 GRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHIP 1209
            GR+AF E+++  IF+SA++PLEG+RW L AEDP Q LA CM+L +A++ SS E+ I HIP
Sbjct: 613  GRIAFAENHLEEIFDSADRPLEGRRWRLGAEDPFQCLAVCMNLTEALRSSSPETTISHIP 672

Query: 1208 VHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEATF 1029
            VHQDGSCNGLQHYAALG+DKLGA AVNL   EKPAD+Y+G+A RV  I+R DA  D +  
Sbjct: 673  VHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVE 732

Query: 1028 ENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSSY 849
             +A  A++++ Q++RKLVKQTVMTSVYGVTYIGAREQIR+RLKERG  P+ +ELF  S Y
Sbjct: 733  PDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSELFGASCY 792

Query: 848  CAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMVR 669
             A+VTLTALGEMF+AAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K    +++
Sbjct: 793  AAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIK 852

Query: 668  TSLQTLALPEECDKV 624
            TSLQ L L  E DKV
Sbjct: 853  TSLQVLTLQRETDKV 867


>ref|XP_006602976.1| PREDICTED: DNA-directed RNA polymerase 2B,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
          Length = 1046

 Score =  886 bits (2290), Expect = 0.0
 Identities = 441/753 (58%), Positives = 555/753 (73%), Gaps = 5/753 (0%)
 Frame = -2

Query: 2867 KDNNKGVEAVRRKEIDMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFL 2688
            K+  KGV   R +E+  RRRQVK+ETE W+ A +EY+ L ++MC  KLAPN+PY++SLFL
Sbjct: 192  KNQGKGVGQSRYQEL--RRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFL 249

Query: 2687 GWFDPLRNAISDVQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDK 2508
            GWF+PLR+AI   Q               +  Y   LPAD MAVI MHK+  LLMTG ++
Sbjct: 250  GWFEPLRDAIVKEQEMYSEGKNRMA----YAPYFVQLPADKMAVIAMHKLMGLLMTGNER 305

Query: 2507 DC--SVPVLQAALKLGEAVEQEVRVHKFLEDTXXXXXXXXXXXQADTSNLN---DEYLQQ 2343
                +  V+QAA  +G+A+E EVR+HKFLE T           +A  S  +   ++ L++
Sbjct: 306  VTIGTARVVQAACGIGDAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVADIKEEQKLRK 365

Query: 2342 KITKLLKRSKGRIVRDILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDP 2163
            K+  L+K+ K   VR ++   D +  W  V   KVGS L+++L+QTAYIQPP+DQ     
Sbjct: 366  KVIDLMKKQKLVAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAA 425

Query: 2162 PEIRPAFKHIFKTSMDEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWK 1983
            P+IRPAF H FKT   E  K ++R G+I+CDPL+ +GLER A++MV PY PML+ P  W 
Sbjct: 426  PDIRPAFVHSFKTVTKESIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWT 485

Query: 1982 GYNKGPYLFLPSHVMRIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVV 1803
            GY+KG +LFLPS+VMR HG R+QREA+K  P+ Q++ V++ALD LG TKWR+N+K+L VV
Sbjct: 486  GYDKGGHLFLPSYVMRTHGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVV 545

Query: 1802 ESIWAEGGGFGDIITRKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELK 1623
            + IWA GG   D++ R DVPLP++P  +DE +IKKWK +    +++N   YS+RCD+ELK
Sbjct: 546  DRIWASGGRIADLVDRDDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELK 605

Query: 1622 LSVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWL 1443
            L+VARKMKDEE FYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGR LG+ GL WL
Sbjct: 606  LAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWL 665

Query: 1442 KIHLANLYGSGVDKLSFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMD 1263
            KIHLANLY  GVDKLS++GR+AF E++  +IF+SA+KPLEG+RWWLKAEDPLQ LA C+ 
Sbjct: 666  KIHLANLYAGGVDKLSYEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCIT 725

Query: 1262 LHDAIKCSSAESFICHIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVA 1083
            L +A++ SS E+FI HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+A
Sbjct: 726  LTEALRSSSPETFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIA 785

Query: 1082 ARVEAIVRRDALNDEATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRL 903
            ARV  I++RDA  D A F +A  A+ L+ Q++RKLVKQTVMTSVYGVTYIGAREQI++RL
Sbjct: 786  ARVSNIMQRDAQKDPAVFRDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRL 845

Query: 902  KERGAFPDQNELFKVSSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSS 723
            KER A  D  ELF  S Y A+VTLTAL EMF+ AR IM WL DCAK IASEN+ VRWT+ 
Sbjct: 846  KERNAISDDKELFGASCYAAKVTLTALEEMFQGARGIMSWLGDCAKVIASENQPVRWTTP 905

Query: 722  MGLPIVQPYQKKSNRMVRTSLQTLALPEECDKV 624
            +GLP+VQPY+K    +++TSLQ L L  E DKV
Sbjct: 906  LGLPVVQPYRKLGKHIIKTSLQILTLQRETDKV 938


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score =  886 bits (2289), Expect = 0.0
 Identities = 435/736 (59%), Positives = 549/736 (74%), Gaps = 4/736 (0%)
 Frame = -2

Query: 2819 MRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQXX 2640
            +RRRQ+++ETEAW+ A +EY+ L  +MC  KLAPN+PY++SLFLGWF+PLR+ I   Q  
Sbjct: 138  LRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRDQIVTEQEL 197

Query: 2639 XXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAALKLGEA 2460
                         H  Y  +LPADMMAVITMHK+  LLMTG   D SV V+QAA ++GEA
Sbjct: 198  VADPGSRAS----HGPYFNMLPADMMAVITMHKLMGLLMTGSG-DGSVRVIQAACQIGEA 252

Query: 2459 VEQEVRVHKFLEDTXXXXXXXXXXXQ---ADTSNLNDEY-LQQKITKLLKRSKGRIVRDI 2292
            +E EVR+++FLE T           +    DT    ++  L++K+T L+K+ K R VR+I
Sbjct: 253  IEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNI 312

Query: 2291 LSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSMDE 2112
            +   D S  W     AKVGS L+++ + TA+IQPP  QS    P+IRPAF+H  +T   E
Sbjct: 313  VKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKE 372

Query: 2111 IRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVMRI 1932
             +K ++R GVI+CDPLV+QGL+R A+HMV PY PMLI P  W GY+KG +LFLPS+VMR 
Sbjct: 373  QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRT 432

Query: 1931 HGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIITRK 1752
            HG+R+QREA+K  P+ QMQ V++AL+ LGSTKWR+N+++L +V+ IW+ GG   D++ R 
Sbjct: 433  HGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRT 492

Query: 1751 DVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYYPH 1572
            DVPLPEKP  EDE  IK WK      +++N   +S+RCD+ELKL+VARKMKDEE FYYPH
Sbjct: 493  DVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPH 552

Query: 1571 NLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKLSF 1392
            NLDFRGRAYPMHP+LNHLGSDLCRGILEFAEGRPLG+ GL WLKIHLANLY  GVDKLS+
Sbjct: 553  NLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSY 612

Query: 1391 DGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFICHI 1212
            DGR+AF E+++  IF+SA++PLEGKRWWL AEDP Q LA CM+L +A++ SS E+ I HI
Sbjct: 613  DGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHI 672

Query: 1211 PVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDEAT 1032
            PVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+Y+G+A RV  I+R DA  D + 
Sbjct: 673  PVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQKDPSI 732

Query: 1031 FENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKVSS 852
              +   A++++ Q++RKLVKQTVMTSVYGVTY+GAR+QI++RLKERG  PD+ ELF  S 
Sbjct: 733  DPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELFGASC 792

Query: 851  YCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNRMV 672
            Y A+VTLTALGEMF+AAR IM WL DCAK IA ENE VRWT+ +GLP+VQPY+K    ++
Sbjct: 793  YAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLI 852

Query: 671  RTSLQTLALPEECDKV 624
            +TSLQ L L  E DKV
Sbjct: 853  KTSLQVLTLQRETDKV 868


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
            AltName: Full=T7 bacteriophage-type single subunit RNA
            polymerase 2; Flags: Precursor
            gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
            [Nicotiana sylvestris]
          Length = 1020

 Score =  883 bits (2281), Expect = 0.0
 Identities = 432/738 (58%), Positives = 552/738 (74%), Gaps = 1/738 (0%)
 Frame = -2

Query: 2834 RKEIDMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAIS 2655
            RK   ++RRQVK+ETEAW+ A +EYK L  +MC  KLAPN+PYV+SLFLGWF+PLR+ I+
Sbjct: 180  RKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIA 239

Query: 2654 DVQXXXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDCSVPVLQAAL 2475
            + Q               + +Y   LPADMMAVITMHK+  LLMTG D   +  V+QAAL
Sbjct: 240  EEQELCSQGKSKAA----YAKYFYQLPADMMAVITMHKLMGLLMTGGDHG-TARVVQAAL 294

Query: 2474 KLGEAVEQEVRVHKFLEDTXXXXXXXXXXXQ-ADTSNLNDEYLQQKITKLLKRSKGRIVR 2298
             +G+A+EQEVR+H FLE T           +  +      E L++K+T L+K+ K R V 
Sbjct: 295  VIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVG 354

Query: 2297 DILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSM 2118
             I+ + D S  W     AKVGS L+D+L+QTAYIQPP +Q   DPP+IRPAF H  +T  
Sbjct: 355  QIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVA 414

Query: 2117 DEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVM 1938
             E +  ++R G+I+CD LV +GLER ARHMV PY PML+ P  W GY+KG +L+LPS+VM
Sbjct: 415  KETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474

Query: 1937 RIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIIT 1758
            R HG+R+QREA+K   +NQ+Q V++ALD LG+TKWRIN+++L VV+ IWA GG   D++ 
Sbjct: 475  RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534

Query: 1757 RKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYY 1578
            R D PLPE+P  EDE    KW+ +    +++N   +S+RCD+ELKL+VARKMKDEE F+Y
Sbjct: 535  RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594

Query: 1577 PHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKL 1398
            PHN+DFRGRAYPMHPHLNHLGSD+CRG+LEFAEGRPLG  GL WLKIHLANL+  GV+KL
Sbjct: 595  PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654

Query: 1397 SFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFIC 1218
            S +GR+ F E+++++IF+S++KPLEG+RWWL AEDP Q LA C++L +A++ SS E+ + 
Sbjct: 655  SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714

Query: 1217 HIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDE 1038
            HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+AARV  I++RDA  D 
Sbjct: 715  HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 774

Query: 1037 ATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKV 858
            A F +A  A++L+ Q++RKLVKQTVMTSVYGVTYIGAR+QI++RLKERGA  D +ELF  
Sbjct: 775  AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834

Query: 857  SSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNR 678
            + Y A+VTLTALGEMFEAAR IM WL +CAK IASENE VRWT+ +GLP+VQPY+K    
Sbjct: 835  ACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRH 894

Query: 677  MVRTSLQTLALPEECDKV 624
            +++TSLQ L L  E +KV
Sbjct: 895  LIKTSLQILTLQRETEKV 912


>ref|XP_004491959.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like isoform X3 [Cicer
            arietinum]
          Length = 1053

 Score =  882 bits (2279), Expect = 0.0
 Identities = 432/738 (58%), Positives = 552/738 (74%), Gaps = 5/738 (0%)
 Frame = -2

Query: 2822 DMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQX 2643
            ++R+RQVK ETE W+ A +EYK L ++MC  KLAPN+PY++SLFLGWF+PL++AI   Q 
Sbjct: 212  ELRKRQVKTETEVWEEAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQE 271

Query: 2642 XXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDC--SVPVLQAALKL 2469
                          +  Y   LP++ MAVITMHK+  LLMTG +K    S  V+Q+   +
Sbjct: 272  VYRTGNKRTV----YAPYFVQLPSEKMAVITMHKMMGLLMTGTEKGSAGSCRVVQSVCSI 327

Query: 2468 GEAVEQEVRVHKFLE--DTXXXXXXXXXXXQADTSNLNDEY-LQQKITKLLKRSKGRIVR 2298
            G+A+EQEVR+HKFLE  +               T+++N+E  L++K+  L+K+ K   VR
Sbjct: 328  GDAIEQEVRIHKFLEKRNKKKRGKGKKNQTVESTADINEEEKLRKKVIDLMKKQKLAAVR 387

Query: 2297 DILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSM 2118
             I+   D +  W +V   KVGS L+++L+QTAYIQPP+D+S    P+IRPAF H F+T  
Sbjct: 388  GIVKGHDDTKPWGSVMKTKVGSRLVELLVQTAYIQPPSDESQDGVPDIRPAFVHSFRTVT 447

Query: 2117 DEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVM 1938
             + +K  K+ GVIECDPL+ +GLER A++MV PY PML+ P  W GY+KG YLFLPS+VM
Sbjct: 448  HDAKKTGKKYGVIECDPLILKGLERTAKNMVIPYMPMLVPPTNWTGYDKGGYLFLPSYVM 507

Query: 1937 RIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIIT 1758
            R HG ++QREA+KNVP+ Q++ VY+ALD LG TKWRIN+++L VV+ IWA GG    +++
Sbjct: 508  RTHGVKQQREAVKNVPRKQLEPVYEALDTLGHTKWRINKEVLSVVDRIWATGGTLAGLVS 567

Query: 1757 RKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYY 1578
            R D  LP++P  +DE+E  KWK +   A+++N   YS+RCD+ELKL+VARKMKDEE FYY
Sbjct: 568  RFDADLPKEPVTDDEVEKTKWKWKLKSAKKENRERYSQRCDIELKLAVARKMKDEESFYY 627

Query: 1577 PHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKL 1398
            PHNLDFRGRAYPMHPHLNHLGSD+CRGILEFA+GRPLG+ GL WLKIHLANLY  GVDKL
Sbjct: 628  PHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSGLYWLKIHLANLYAGGVDKL 687

Query: 1397 SFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFIC 1218
            S +GR+AFVE+++++IF+SAEKP+EG++WWL AEDP Q LAAC+ L +A++ S+ E F+ 
Sbjct: 688  SSEGRIAFVENHLDDIFDSAEKPMEGRQWWLNAEDPFQCLAACITLTEALRSSAPEEFMS 747

Query: 1217 HIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDE 1038
            HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+AARV  I+RRDA  D 
Sbjct: 748  HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVFEIMRRDAQKDP 807

Query: 1037 ATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKV 858
              F +AR A+ L+ Q++RKLVKQTVMTSVYGVTYIGAREQI++RLKER    D +ELF  
Sbjct: 808  TVFSDARHARALVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNTILDDSELFGA 867

Query: 857  SSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNR 678
            S Y A+VTLTAL EMF+ AR IM WL DCAK IASEN+ VRWT+ +GLP+VQPY+K    
Sbjct: 868  SCYAAKVTLTALEEMFQGARSIMNWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGRH 927

Query: 677  MVRTSLQTLALPEECDKV 624
            +V+TSLQ L L  E DKV
Sbjct: 928  IVKTSLQMLTLQRETDKV 945


>ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like isoform X2 [Cicer
            arietinum]
          Length = 1090

 Score =  882 bits (2279), Expect = 0.0
 Identities = 432/738 (58%), Positives = 552/738 (74%), Gaps = 5/738 (0%)
 Frame = -2

Query: 2822 DMRRRQVKMETEAWKNATEEYKRLAIEMCSLKLAPNIPYVQSLFLGWFDPLRNAISDVQX 2643
            ++R+RQVK ETE W+ A +EYK L ++MC  KLAPN+PY++SLFLGWF+PL++AI   Q 
Sbjct: 249  ELRKRQVKTETEVWEEAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQE 308

Query: 2642 XXXXXXXXXXXXXTHEEYLCLLPADMMAVITMHKVTTLLMTGKDKDC--SVPVLQAALKL 2469
                          +  Y   LP++ MAVITMHK+  LLMTG +K    S  V+Q+   +
Sbjct: 309  VYRTGNKRTV----YAPYFVQLPSEKMAVITMHKMMGLLMTGTEKGSAGSCRVVQSVCSI 364

Query: 2468 GEAVEQEVRVHKFLE--DTXXXXXXXXXXXQADTSNLNDEY-LQQKITKLLKRSKGRIVR 2298
            G+A+EQEVR+HKFLE  +               T+++N+E  L++K+  L+K+ K   VR
Sbjct: 365  GDAIEQEVRIHKFLEKRNKKKRGKGKKNQTVESTADINEEEKLRKKVIDLMKKQKLAAVR 424

Query: 2297 DILSKSDKSNSWDNVTHAKVGSALLDMLIQTAYIQPPTDQSLQDPPEIRPAFKHIFKTSM 2118
             I+   D +  W +V   KVGS L+++L+QTAYIQPP+D+S    P+IRPAF H F+T  
Sbjct: 425  GIVKGHDDTKPWGSVMKTKVGSRLVELLVQTAYIQPPSDESQDGVPDIRPAFVHSFRTVT 484

Query: 2117 DEIRKRTKRKGVIECDPLVKQGLERMARHMVTPYTPMLIKPNTWKGYNKGPYLFLPSHVM 1938
             + +K  K+ GVIECDPL+ +GLER A++MV PY PML+ P  W GY+KG YLFLPS+VM
Sbjct: 485  HDAKKTGKKYGVIECDPLILKGLERTAKNMVIPYMPMLVPPTNWTGYDKGGYLFLPSYVM 544

Query: 1937 RIHGSRKQREAMKNVPKNQMQKVYQALDFLGSTKWRINRKILHVVESIWAEGGGFGDIIT 1758
            R HG ++QREA+KNVP+ Q++ VY+ALD LG TKWRIN+++L VV+ IWA GG    +++
Sbjct: 545  RTHGVKQQREAVKNVPRKQLEPVYEALDTLGHTKWRINKEVLSVVDRIWATGGTLAGLVS 604

Query: 1757 RKDVPLPEKPAIEDELEIKKWKRQTWEAERKNMILYSRRCDLELKLSVARKMKDEECFYY 1578
            R D  LP++P  +DE+E  KWK +   A+++N   YS+RCD+ELKL+VARKMKDEE FYY
Sbjct: 605  RFDADLPKEPVTDDEVEKTKWKWKLKSAKKENRERYSQRCDIELKLAVARKMKDEESFYY 664

Query: 1577 PHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGRRGLSWLKIHLANLYGSGVDKL 1398
            PHNLDFRGRAYPMHPHLNHLGSD+CRGILEFA+GRPLG+ GL WLKIHLANLY  GVDKL
Sbjct: 665  PHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSGLYWLKIHLANLYAGGVDKL 724

Query: 1397 SFDGRMAFVEDNINNIFESAEKPLEGKRWWLKAEDPLQFLAACMDLHDAIKCSSAESFIC 1218
            S +GR+AFVE+++++IF+SAEKP+EG++WWL AEDP Q LAAC+ L +A++ S+ E F+ 
Sbjct: 725  SSEGRIAFVENHLDDIFDSAEKPMEGRQWWLNAEDPFQCLAACITLTEALRSSAPEEFMS 784

Query: 1217 HIPVHQDGSCNGLQHYAALGRDKLGAEAVNLTHQEKPADIYSGVAARVEAIVRRDALNDE 1038
            HIPVHQDGSCNGLQHYAALGRDKLGA AVNL   EKPAD+YSG+AARV  I+RRDA  D 
Sbjct: 785  HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVFEIMRRDAQKDP 844

Query: 1037 ATFENARWAKMLLGQINRKLVKQTVMTSVYGVTYIGAREQIRKRLKERGAFPDQNELFKV 858
              F +AR A+ L+ Q++RKLVKQTVMTSVYGVTYIGAREQI++RLKER    D +ELF  
Sbjct: 845  TVFSDARHARALVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNTILDDSELFGA 904

Query: 857  SSYCAQVTLTALGEMFEAARDIMGWLNDCAKTIASENETVRWTSSMGLPIVQPYQKKSNR 678
            S Y A+VTLTAL EMF+ AR IM WL DCAK IASEN+ VRWT+ +GLP+VQPY+K    
Sbjct: 905  SCYAAKVTLTALEEMFQGARSIMNWLGDCAKVIASENQPVRWTTPLGLPVVQPYRKLGRH 964

Query: 677  MVRTSLQTLALPEECDKV 624
            +V+TSLQ L L  E DKV
Sbjct: 965  IVKTSLQMLTLQRETDKV 982