BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00001715
         (4591 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006849925.1| hypothetical protein AMTR_s00022p00114710 [A...  1028   0.0  
ref|XP_002518663.1| U520, putative [Ricinus communis] gi|2235420...  1021   0.0  
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei...  1021   0.0  
emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]  1020   0.0  
ref|XP_002322252.1| U5 small nuclear ribonucleoprotein helicase ...  1014   0.0  
ref|XP_001757495.1| predicted protein [Physcomitrella patens] gi...  1007   0.0  
gb|ESW21254.1| hypothetical protein PHAVU_005G055300g [Phaseolus...  1006   0.0  
ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa h...  1005   0.0  
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc...  1001   0.0  
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei...  1001   0.0  
ref|XP_004488845.1| PREDICTED: U5 small nuclear ribonucleoprotei...  1001   0.0  
gb|EOY19725.1| U5 small nuclear ribonucleoprotein helicase, puta...   999   0.0  
gb|EOY19724.1| U5 small nuclear ribonucleoprotein helicase, puta...   999   0.0  
ref|XP_006350847.1| PREDICTED: U5 small nuclear ribonucleoprotei...   998   0.0  
ref|XP_006598183.1| PREDICTED: U5 small nuclear ribonucleoprotei...   998   0.0  
ref|XP_006416344.1| hypothetical protein EUTSA_v10006525mg [Eutr...   997   0.0  
ref|XP_004242515.1| PREDICTED: U5 small nuclear ribonucleoprotei...   994   0.0  
ref|XP_006480405.1| PREDICTED: U5 small nuclear ribonucleoprotei...   993   0.0  
ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotei...   992   0.0  
ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein hel...   987   0.0  

>ref|XP_006849925.1| hypothetical protein AMTR_s00022p00114710 [Amborella trichopoda]
            gi|548853523|gb|ERN11506.1| hypothetical protein
            AMTR_s00022p00114710 [Amborella trichopoda]
          Length = 2171

 Score = 1028 bits (2657), Expect(2) = 0.0
 Identities = 506/667 (75%), Positives = 575/667 (86%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + SSQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQGIDIANF
Sbjct: 1500 YISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGIDIANF 1559

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T++VQHAK  KPALV+VPTRKHARLTALD+VTYANA+SGE+S FL   
Sbjct: 1560 EARMQAMTKPTYTAVVQHAKVGKPALVYVPTRKHARLTALDLVTYANAESGEKSSFLLQP 1619

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
            +E L+PF+SRV E  LS  L HGVGY+HEGLSS +Q++V+HLF+AG IQVCV+       
Sbjct: 1620 EEVLEPFISRVSEPALSAALRHGVGYIHEGLSSIDQDVVSHLFSAGCIQVCVSSSSMCWG 1679

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
                AHLVVV+GTQYYDGRENAHTDYPITDLLQMMG ASRPL DNSGKCVILCHAPRKEY
Sbjct: 1680 TPLLAHLVVVMGTQYYDGRENAHTDYPITDLLQMMGHASRPLQDNSGKCVILCHAPRKEY 1739

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKF+YE FPVESHL HFLHD++NAEVVVG IESKQDAVDYLTWTF+YRRL+QNPNYYNL
Sbjct: 1740 YKKFVYESFPVESHLQHFLHDNLNAEVVVGIIESKQDAVDYLTWTFMYRRLSQNPNYYNL 1799

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTL++LEASKCVA+EE+M LSPLNLGMIA              
Sbjct: 1800 QGVSHRHLSDHLSELVENTLSNLEASKCVAIEEDMDLSPLNLGMIASYYYISYTTIERFS 1859

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGLIEILASASEYA LPIRPGEEE ++K+I HQRF++E P+ TDPH+KAN 
Sbjct: 1860 SLLTAKTKLKGLIEILASASEYADLPIRPGEEEMIRKLINHQRFSVEKPRYTDPHLKANA 1919

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLA DQREVLLSA+RLLQAMVDVISSNGWL  AL+ MELSQMVTQ +
Sbjct: 1920 LLQAHFSRHTVVGNLAADQREVLLSANRLLQAMVDVISSNGWLVLALSAMELSQMVTQSM 1979

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W++DSVLLQ+PHFT++LAKKC+ENPGKSIET+FDL+EMEDDERR+LLQM+D+ LLDIA++
Sbjct: 1980 WDKDSVLLQLPHFTRELAKKCKENPGKSIETIFDLLEMEDDERRDLLQMSDSQLLDIAKY 2039

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID++YEVLE +    GE+V +QV LERDLEGR E+ PVDAPRYPK K+EGWWLV
Sbjct: 2040 CNRFPNIDMSYEVLEGEVAGAGENVILQVTLERDLEGRSEVGPVDAPRYPKAKEEGWWLV 2099

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD   NQLLAIKRV+LQRK+KVKLEF AP +VG+K YTL+FMCDSYLGCDQEY FTI+V
Sbjct: 2100 VGDFKLNQLLAIKRVSLQRKSKVKLEFPAPSEVGKKEYTLYFMCDSYLGCDQEYNFTIDV 2159

Query: 1908 QEAMEED 1888
            +EAME D
Sbjct: 2160 KEAMEGD 2166



 Score =  406 bits (1043), Expect(2) = 0.0
 Identities = 198/237 (83%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+ K QY DEDH L+FTV I+EPLPPQYFIRVVSD+WLGSQT+LPV
Sbjct: 1248 VEDNDGEYILHHEYFMQKMQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPV 1307

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPS EALY  FKHFNPIQTQVFTVLYNSDDN
Sbjct: 1308 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSCEALYQDFKHFNPIQTQVFTVLYNSDDN 1367

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFALLR HQ+ P++ MR VYIAP+EALAKER RDW+ KFG+ LGL
Sbjct: 1368 VLVAAPTGSGKTICAEFALLRNHQKGPDSIMRVVYIAPIEALAKERYRDWEQKFGKGLGL 1427

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLEKA +II TPEKWDALSRRWKQRK VQQV+LFIVDELHL+G
Sbjct: 1428 RVVELTGETATDLKLLEKAQVIIGTPEKWDALSRRWKQRKHVQQVSLFIVDELHLIG 1484



 Score =  207 bits (527), Expect(2) = 5e-73
 Identities = 160/581 (27%), Positives = 266/581 (45%), Gaps = 10/581 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RP PL     GI +     R Q M 
Sbjct: 669  IRLVGLSATLPNYQDVALFLRVDKDKGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMN 728

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +   V+   G    LVFV +RK    TA  I     AN   G   +    ++E L  
Sbjct: 729  DICYKK-VEAIAGKHQVLVFVHSRKETAKTARAIRDTALANDTLGRFLKEDSVSREILQS 787

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G++ A++ LV  LF+   IQV V+           AH
Sbjct: 788  EAENVKSTELKDLLPYGFAIHHAGMTRADRTLVEELFSDSHIQVLVSTATLAWGVNLPAH 847

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  +   T+    D++QM+GRA RP  D  G+ +IL      +YY   + 
Sbjct: 848  TVIIKGTQIYNPEKGIWTELSPLDVMQMLGRAGRPQYDTYGEGIILTGHSELQYYLSLMN 907

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQG---V 2980
            E  P+ES     L D +NAE+V+GT+++ ++A  +L +T+LY R+ +NP  Y L      
Sbjct: 908  EQLPIESQFVSKLADQLNAEIVLGTVQNAREACTWLGYTYLYIRMLRNPVLYGLTTDAIE 967

Query: 2979 SHRHLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXXX 2803
              + L +  ++LV +  T L+ +  V  + +  Y    +LG IA                
Sbjct: 968  KDKTLEERRADLVHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEH 1027

Query: 2802 XXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVLL 2623
                     L  + + + E+  + +R  E+  + K++      ++     +P  K NVLL
Sbjct: 1028 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPCAKINVLL 1086

Query: 2622 QAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLW 2446
            QA+ S+  + G +LA D   +  SA RLL+A+ +++   GW   A   + L +MV + +W
Sbjct: 1087 QAYISQLKLEGLSLASDMVYITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMVGKRMW 1146

Query: 2445 ERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFC 2266
               + L Q      D+  K  E    + E  +DL   E  E     +M       + +F 
Sbjct: 1147 SVQTPLRQFKGIPNDILMKI-EKKDLAWERYYDLSSQEIGELIRFPKMGKT----LHKFI 1201

Query: 2265 NRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            ++FP ++L  N + + R  +R   ++T     +  + G +E
Sbjct: 1202 HQFPKLNLAANVQPITRTVLRVELTITPDFQWDEKVHGYVE 1242



 Score = 98.2 bits (243), Expect(2) = 5e-73
 Identities = 57/176 (32%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
 Frame = -1

Query: 4390 PEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPT 4211
            P+  AP  EL+ +  LP  A      +  + + K  N +Q++V+     + +N+L+ APT
Sbjct: 475  PKPMAPGEELIKIAVLPEWA------QPAFSEMKQLNRVQSRVYETALFTPENILLCAPT 528

Query: 4210 GSGKTICAEFALLR---LHQQSP-----ENMRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            G+GKT  A   +L+   LH+ +       + + VY+AP++AL  E + +   +  +A G+
Sbjct: 529  GAGKTNVAMLTILQQLGLHRNADGSFDNSSYKIVYVAPMKALVAEVVGNLSKRL-QAYGV 587

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
             V +L G+     + +E+  II++TPEKWD ++R+   R   Q V L IVDE+HL+
Sbjct: 588  SVKELTGDQTLSRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLL 643


>ref|XP_002518663.1| U520, putative [Ricinus communis] gi|223542044|gb|EEF43588.1| U520,
            putative [Ricinus communis]
          Length = 1809

 Score = 1021 bits (2641), Expect(2) = 0.0
 Identities = 497/663 (74%), Positives = 571/663 (86%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALSSSLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1141 YIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1200

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPA+VFVPTRKH RLTA+D++TY++ADSGE+  F+  +
Sbjct: 1201 EARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDLMTYSSADSGEKPAFMMRS 1260

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+ RV++  L   L  GVGYLHEGLSS +QE+V+ LF AG IQVCV        
Sbjct: 1261 IEELEPFVGRVQDEMLRSTLRQGVGYLHEGLSSLDQEVVSQLFEAGWIQVCVMSSSMCWG 1320

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               +AHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1321 VPLAAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1380

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD+ NAEVV G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1381 YKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1440

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTL+DLEASKCVA+EE+M LSPLNLGMIA              
Sbjct: 1441 QGVSHRHLSDHLSELVENTLSDLEASKCVAIEEDMDLSPLNLGMIASYYYISYTTIERFS 1500

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA+LPIRPGEEE ++++I HQRF+ ENP+ +DPHVKANV
Sbjct: 1501 SSLTSKTRMKGLLEILASASEYAQLPIRPGEEEVLRRLINHQRFSFENPRYSDPHVKANV 1560

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLALDQREVLLS+SRLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1561 LLQAHFSRHSVGGNLALDQREVLLSSSRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1620

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTK+LAKKCQENPGKSIETVFDLVEMEDDERRELLQM++++LLD+ RF
Sbjct: 1621 WERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRELLQMSNSELLDVVRF 1680

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID++YEV++ +DVR G+ +T+QV LERDLEGR E+ PVDA RYPK K+EGWWLV
Sbjct: 1681 CNRFPNIDMSYEVMDGEDVRMGDDITLQVTLERDLEGRTEVGPVDAARYPKAKEEGWWLV 1740

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRV+LQRK+KVKLEF AP + G K+YTL+FMCDSYLGCDQEY F ++V
Sbjct: 1741 VGDTKSNQLLAIKRVSLQRKSKVKLEFAAPSETGRKSYTLYFMCDSYLGCDQEYSFNVDV 1800

Query: 1908 QEA 1900
            +EA
Sbjct: 1801 KEA 1803



 Score =  411 bits (1057), Expect(2) = 0.0
 Identities = 197/237 (83%), Positives = 219/237 (92%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+LKKQY DEDH L+FTV I+EPLPPQYFIRVVSD+WLGSQT+LPV
Sbjct: 889  VEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPV 948

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYN+DDN
Sbjct: 949  SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDN 1008

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPENM-RCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P+++ R VYIAPLEA+AKER RDW+ KFGR LG+
Sbjct: 1009 VLVAAPTGSGKTICAEFAILRNHQKGPDSVTRAVYIAPLEAIAKERYRDWERKFGRGLGM 1068

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLEK+ IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1069 RVVELTGETATDLKLLEKSQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1125



 Score =  207 bits (528), Expect(2) = 2e-70
 Identities = 157/581 (27%), Positives = 272/581 (46%), Gaps = 10/581 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPVPL     GI +     R Q M 
Sbjct: 310  IRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPVPLSQQYIGITVKKPLQRFQLMN 369

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G   +    ++E L  
Sbjct: 370  DICYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDSALANDTLGRFLKEDSASREILQS 428

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G++ A+++LV  LF  G +QV V+           AH
Sbjct: 429  HTDMVKSNDLKDLLPYGFAIHHAGMTRADRQLVEDLFADGHVQVLVSTATLAWGVNLPAH 488

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   + 
Sbjct: 489  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHTELQYYLSLMN 548

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL-QGVSH 2974
            +  P+ES     L D +NAE+V+GT+++ ++A ++L +T+LY R+ +NP  Y L   V  
Sbjct: 549  QQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWLGYTYLYIRMLRNPTLYGLAPDVLT 608

Query: 2973 RH--LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXXX 2803
            R   L +  ++L+ ++ T L+ +  V  + +  Y    +LG IA                
Sbjct: 609  RDITLEERRADLIHSSATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEH 668

Query: 2802 XXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVLL 2623
                     L  + + + E+  + +R  E+  + K++      I+     +P  K NVLL
Sbjct: 669  LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVLL 727

Query: 2622 QAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLW 2446
            QA+ S+  + G +L  D   +  SA RLL+A+ +++   GW       + L +M+ + +W
Sbjct: 728  QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLTEKALNLCKMINKRMW 787

Query: 2445 ERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFC 2266
               + L Q      ++  K  E    + E  +DL   E  E     +M       + +F 
Sbjct: 788  SVQTPLRQFNGIPNEILMKL-EKKDLAWERYYDLSSQEIGELIRFPKMGRT----LHKFI 842

Query: 2265 NRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            ++FP ++L  + + + R  +R   ++T     E  + G +E
Sbjct: 843  HQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVE 883



 Score = 89.4 bits (220), Expect(2) = 2e-70
 Identities = 53/177 (29%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
 Frame = -1

Query: 4390 PEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPT 4211
            P   A   +L+ +  +P  A   P+++ +    +  N +Q++V+       DNVL+ APT
Sbjct: 115  PRPIASDEKLVKISDMPGWA--QPAFKGM----QQLNRVQSRVYETALFKADNVLLCAPT 168

Query: 4210 GSGKTICAEFALL-----RLHQQ----SPENMRCVYIAPLEALAKERLRDWDDKFGRALG 4058
            G+GKT  A   +L     +++++    +  + + VY+AP++AL  E + +  ++  +  G
Sbjct: 169  GAGKTNVAVLTILQQLGLKMNKEDGSFNHSDYKIVYVAPMKALVAEVVGNLSNRL-QEYG 227

Query: 4057 LKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
            +KV +L G+ +   + +E+  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 228  VKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 284


>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis
            vinifera]
          Length = 2177

 Score = 1021 bits (2640), Expect(2) = 0.0
 Identities = 496/669 (74%), Positives = 570/669 (85%), Gaps = 2/669 (0%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQGENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1508 YIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1567

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPA+VFVPTRKH RLTA+D+ TY++AD GE   FL  +
Sbjct: 1568 EARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGGENPTFLLRS 1627

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+ +++E  L   L HGVGYLHEGL+  +QE+V+ LF AG IQVCV        
Sbjct: 1628 PEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVCVMSSSLCWG 1687

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1688 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1747

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL H+LHD++NAE+VVG IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1748 YKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1807

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE VENTL+DLEASKCVA+E++M LSPLNLGMIA              
Sbjct: 1808 QGVSHRHLSDHLSESVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISYTTIERFS 1867

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA++PIRPGEE+ ++++I HQRF+ ENPK TDPH+KAN 
Sbjct: 1868 SSLTSKTKMKGLLEILASASEYAQIPIRPGEEDLIRRLINHQRFSFENPKCTDPHIKANA 1927

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR +V GNLALDQREVLLSA RLLQAMVDVISSNGWLN AL  ME+SQMVTQG+
Sbjct: 1928 LLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGM 1987

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGKSIETVFDLVEMEDDERRELLQM+D+ LLDIARF
Sbjct: 1988 WERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDSQLLDIARF 2047

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID+ YEVL+ +++R G+ +T+QV LERDLEGR E+  VDAPRYPK K+EGWWLV
Sbjct: 2048 CNRFPNIDITYEVLDSENLRAGDDITLQVMLERDLEGRTEVGSVDAPRYPKAKEEGWWLV 2107

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRVALQRK+KVKLEF  P + G K+YTL+FMCDSYLGCDQEY F+++V
Sbjct: 2108 VGDTKSNQLLAIKRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCDQEYSFSVDV 2167

Query: 1908 QEAM--EED 1888
             +A   EED
Sbjct: 2168 MDASGPEED 2176



 Score =  403 bits (1036), Expect(2) = 0.0
 Identities = 194/237 (81%), Positives = 217/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF++KKQY DE H L+FTV I+EPLPPQYFIRVVSDRWLGSQ++LPV
Sbjct: 1256 VEDNDGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPV 1315

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY +FKHFNPIQTQVFTVLYN+DDN
Sbjct: 1316 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDN 1375

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+  E+ +R VYIAP+EALAKER RDW+ KFGR LG+
Sbjct: 1376 VLVAAPTGSGKTICAEFAILRNHQKGSESIVRAVYIAPIEALAKERYRDWERKFGRGLGM 1435

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLE+  +IISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1436 RVVELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1492



 Score =  204 bits (518), Expect(2) = 5e-69
 Identities = 155/584 (26%), Positives = 270/584 (46%), Gaps = 13/584 (2%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RP PL     GI +     R Q M 
Sbjct: 677  IRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMN 736

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G   +    ++E L  
Sbjct: 737  DVCYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHS 795

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G++ A+++LV  LF  G +QV V+           AH
Sbjct: 796  HTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQVLVSTATLAWGVNLPAH 855

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   + 
Sbjct: 856  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMN 915

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSHR 2971
            +  P+ES     L D +NAE+V+GT+++ ++A  ++ +T+LY R+ +NP  Y   G+SH 
Sbjct: 916  QQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVRMLRNPTLY---GLSHD 972

Query: 2970 HLS------DHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXX 2812
             L+      +  ++L+ +    L+ +  V  + +  Y    +LG IA             
Sbjct: 973  ALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTY 1032

Query: 2811 XXXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKAN 2632
                        L  + + + E+  + +R  E+  + K++      I+     +P  K N
Sbjct: 1033 NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKIN 1091

Query: 2631 VLLQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQ 2455
            VLLQA+ S+  + G +L  D   +  SA RL++A+ +++   GW       + L +MV +
Sbjct: 1092 VLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLTEKALNLCKMVNK 1151

Query: 2454 GLWERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIA 2275
             +W   + L Q      ++  K  E    + E  +DL   E  E     +M       + 
Sbjct: 1152 RMWSVQTPLRQFNAIPNEILMKL-EKKDLAWERYYDLSSQELGELIRYPKMGRT----LH 1206

Query: 2274 RFCNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            +F ++FP +DL  + + + R  +R   ++T     E  + G +E
Sbjct: 1207 KFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVE 1250



 Score = 88.2 bits (217), Expect(2) = 5e-69
 Identities = 54/171 (31%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
 Frame = -1

Query: 4375 PPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPTGSGKT 4196
            P  EL+ +  +P  A   P+++ +       N +Q++V+     + +NVL+ APTG+GKT
Sbjct: 488  PGEELVKISAMPDWA--QPAFKGM----TQLNRVQSKVYETALFTAENVLLCAPTGAGKT 541

Query: 4195 ICAEFALLR---LHQQSP-----ENMRCVYIAPLEALAKERLRDWDDKFGRALGLKVVDL 4040
              A   +L+   L++ +       N + VY+AP++AL  E + +  ++  +   +KV +L
Sbjct: 542  NVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QHYDVKVKEL 600

Query: 4039 QGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
             G+ +   + +E+  II++TPEKWD ++R+   R   Q V L IVDE+HL+
Sbjct: 601  SGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLL 651


>emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera]
          Length = 2144

 Score = 1020 bits (2637), Expect(2) = 0.0
 Identities = 496/669 (74%), Positives = 569/669 (85%), Gaps = 2/669 (0%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQGENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1475 YIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1534

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPA+VFVPTRKH RLTA+D+ TY++AD GE   FL  +
Sbjct: 1535 EARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGGENPTFLLRS 1594

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+ +++E  L   L HGVGYLHEGL+  +QE+V+ LF AG IQVCV        
Sbjct: 1595 PEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVCVMSSSLCWG 1654

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1655 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1714

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL H+LHD++NAE+VVG IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1715 YKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1774

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE VENTL+DLEASKCVA+E++M LSPLNLGMIA              
Sbjct: 1775 QGVSHRHLSDHLSESVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISYTTIERFS 1834

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA++PIRPGEE+ ++++I HQRF+ ENPK TDPH+KAN 
Sbjct: 1835 SSLTSKTKMKGLLEILASASEYAQIPIRPGEEDLIRRLINHQRFSFENPKCTDPHIKANA 1894

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR +V GNLALDQREVLLSA RLLQAMVDVISSNGWLN AL  ME+SQMVTQG+
Sbjct: 1895 LLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGM 1954

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGKSIETVFDLVEMEDDERRELLQM+D+ LLDIARF
Sbjct: 1955 WERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDSQLLDIARF 2014

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID  YEVL+ +++R G+ +T+QV LERDLEGR E+  VDAPRYPK K+EGWWLV
Sbjct: 2015 CNRFPNIDXTYEVLDSENLRAGDDITLQVMLERDLEGRTEVGSVDAPRYPKAKEEGWWLV 2074

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRVALQRK+KVKLEF  P + G K+YTL+FMCDSYLGCDQEY F+++V
Sbjct: 2075 VGDTKSNQLLAIKRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCDQEYSFSVDV 2134

Query: 1908 QEAM--EED 1888
             +A   EED
Sbjct: 2135 MDASGPEED 2143



 Score =  403 bits (1036), Expect(2) = 0.0
 Identities = 194/237 (81%), Positives = 217/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF++KKQY DE H L+FTV I+EPLPPQYFIRVVSDRWLGSQ++LPV
Sbjct: 1223 VEDNDGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPV 1282

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY +FKHFNPIQTQVFTVLYN+DDN
Sbjct: 1283 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDN 1342

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+  E+ +R VYIAP+EALAKER RDW+ KFGR LG+
Sbjct: 1343 VLVAAPTGSGKTICAEFAILRNHQKGSESIVRAVYIAPIEALAKERYRDWERKFGRGLGM 1402

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLE+  +IISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1403 RVVELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1459



 Score =  204 bits (518), Expect(2) = 5e-69
 Identities = 155/584 (26%), Positives = 270/584 (46%), Gaps = 13/584 (2%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RP PL     GI +     R Q M 
Sbjct: 644  IRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMN 703

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G   +    ++E L  
Sbjct: 704  DVCYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHS 762

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G++ A+++LV  LF  G +QV V+           AH
Sbjct: 763  HTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQVLVSTATLAWGVNLPAH 822

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   + 
Sbjct: 823  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMN 882

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSHR 2971
            +  P+ES     L D +NAE+V+GT+++ ++A  ++ +T+LY R+ +NP  Y   G+SH 
Sbjct: 883  QQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVRMLRNPTLY---GLSHD 939

Query: 2970 HLS------DHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXX 2812
             L+      +  ++L+ +    L+ +  V  + +  Y    +LG IA             
Sbjct: 940  ALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTY 999

Query: 2811 XXXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKAN 2632
                        L  + + + E+  + +R  E+  + K++      I+     +P  K N
Sbjct: 1000 NEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKIN 1058

Query: 2631 VLLQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQ 2455
            VLLQA+ S+  + G +L  D   +  SA RL++A+ +++   GW       + L +MV +
Sbjct: 1059 VLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLTEKALNLCKMVNK 1118

Query: 2454 GLWERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIA 2275
             +W   + L Q      ++  K  E    + E  +DL   E  E     +M       + 
Sbjct: 1119 RMWSVQTPLRQFNAIPNEILMKL-EKKDLAWERYYDLSSQELGELIRYPKMGRT----LH 1173

Query: 2274 RFCNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            +F ++FP +DL  + + + R  +R   ++T     E  + G +E
Sbjct: 1174 KFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVE 1217



 Score = 88.2 bits (217), Expect(2) = 5e-69
 Identities = 54/171 (31%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
 Frame = -1

Query: 4375 PPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPTGSGKT 4196
            P  EL+ +  +P  A   P+++ +       N +Q++V+     + +NVL+ APTG+GKT
Sbjct: 455  PGEELVKISAMPDWA--QPAFKGM----TQLNRVQSKVYETALFTAENVLLCAPTGAGKT 508

Query: 4195 ICAEFALLR---LHQQSP-----ENMRCVYIAPLEALAKERLRDWDDKFGRALGLKVVDL 4040
              A   +L+   L++ +       N + VY+AP++AL  E + +  ++  +   +KV +L
Sbjct: 509  NVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL-QHYDVKVKEL 567

Query: 4039 QGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
             G+ +   + +E+  II++TPEKWD ++R+   R   Q V L IVDE+HL+
Sbjct: 568  SGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLL 618


>ref|XP_002322252.1| U5 small nuclear ribonucleoprotein helicase [Populus trichocarpa]
            gi|222869248|gb|EEF06379.1| U5 small nuclear
            ribonucleoprotein helicase [Populus trichocarpa]
          Length = 2157

 Score = 1014 bits (2623), Expect(2) = 0.0
 Identities = 496/667 (74%), Positives = 564/667 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALSSSLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1485 YIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1544

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +TSIVQHAK  KPA+VFVPTRKH RL A+D++TY++ D GE+  FL  +
Sbjct: 1545 EARMQAMTKPTYTSIVQHAKNGKPAIVFVPTRKHVRLAAVDLMTYSSMDGGEKPPFLLRS 1604

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+ +++E  L   L HG+GYLHEGLSS +QE+V+ LF AG IQVCV        
Sbjct: 1605 IEELEPFIGKIQEEMLRATLHHGIGYLHEGLSSLDQEVVSQLFEAGWIQVCVMSSSMCWG 1664

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDG+ENAHTDYP+TDLLQMMG ASRPL+DNSGKCVI CHAPRKEY
Sbjct: 1665 VPLSAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIFCHAPRKEY 1724

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD+ NAEVV G IE+KQDAVDYLTWTF YRRLTQNPNYYNL
Sbjct: 1725 YKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFTYRRLTQNPNYYNL 1784

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTLTDLE SKCVA+EE+M LSPLNLGMIA              
Sbjct: 1785 QGVSHRHLSDHLSELVENTLTDLERSKCVAIEEDMDLSPLNLGMIASYYYISYTTIERFS 1844

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL+SASEYA+LPIRPGEEE ++++I HQRF+ ENP+  DPHVKANV
Sbjct: 1845 SSLTPKTKMKGLLEILSSASEYAQLPIRPGEEEVLRRLINHQRFSFENPRYADPHVKANV 1904

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLALDQREVLLS SRLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1905 LLQAHFSRQSVGGNLALDQREVLLSGSRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1964

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKD+AK+CQENPGKSIETVFDLVEMEDDERRELLQM+D+ LLDI RF
Sbjct: 1965 WERDSMLLQLPHFTKDMAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDSQLLDIVRF 2024

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID++YEV++ D+VR GE +T+ V LERDLEGR E+ PVD+PRYPK K+EGWWLV
Sbjct: 2025 CNRFPNIDMSYEVMDGDNVRAGEDITLLVTLERDLEGRTEVGPVDSPRYPKAKEEGWWLV 2084

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRV+LQRK+KVKLEF AP D G K+YTL+FMCDSYLGCDQEY F+++V
Sbjct: 2085 VGDTKSNQLLAIKRVSLQRKSKVKLEFAAPADTGRKSYTLYFMCDSYLGCDQEYNFSVDV 2144

Query: 1908 QEAMEED 1888
             EA   D
Sbjct: 2145 GEAAGPD 2151



 Score =  402 bits (1032), Expect(2) = 0.0
 Identities = 196/241 (81%), Positives = 217/241 (90%), Gaps = 5/241 (2%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADE----DHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQT 4424
            VEDNDG+ ILHHEYF+LKKQY DE    D  L+FTV I+EPLPPQYFIRVVSD+WLGSQT
Sbjct: 1229 VEDNDGDYILHHEYFMLKKQYVDEHQVVDLTLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1288

Query: 4423 ILPVSFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYN 4244
            +LPVSFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYN
Sbjct: 1289 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYN 1348

Query: 4243 SDDNVLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGR 4067
            +DDNVLVAAPTGSGKTICAEFA+LR HQ+ PE+ MR VYIAPLEA+A+ER RDW+ KFGR
Sbjct: 1349 TDDNVLVAAPTGSGKTICAEFAILRNHQKGPESVMRAVYIAPLEAIARERYRDWERKFGR 1408

Query: 4066 ALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
             LG++VV+L GE+A DLKLLEK  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+
Sbjct: 1409 GLGMRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1468

Query: 3886 G 3884
            G
Sbjct: 1469 G 1469



 Score =  207 bits (528), Expect(2) = 1e-60
 Identities = 159/582 (27%), Positives = 275/582 (47%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPVPL     GI+I     R Q M 
Sbjct: 650  IRLVGLSATLPNFEDVALFLRVDLDKGLFHFDNSYRPVPLSQQYIGINIKKPLQRFQLMN 709

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  I   A A+    S+FL+    ++E L 
Sbjct: 710  DICYEKVMDVA-GKHQVLIFVHSRKETAKTARAIRDTALAND-TLSRFLREDSASREILQ 767

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H G++  +++LV  LF  G +QV V+           A
Sbjct: 768  THTELVKSNDLKDLLPYGFAVHHAGMTRGDRQLVEDLFADGHVQVLVSTATLAWGVNLPA 827

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   +
Sbjct: 828  HTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLM 887

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL-QGVS 2977
             +  P+ES     L D +NAE+V+GT+++ ++A  +L +T+LY R+ +NP  Y L   V 
Sbjct: 888  NQQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMLRNPTLYGLAPDVL 947

Query: 2976 HRH--LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
             R   L +  ++L+ +    L+ +  V  + +  Y    +LG IA               
Sbjct: 948  TRDITLEERRADLIHSAAAILDKNNLVKYDRKSGYFQGTDLGRIASYYYITHGTISTYNE 1007

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K++      I+     +P  K NVL
Sbjct: 1008 HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVL 1066

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RL++A+ +++   GW   A   + L +MV + +
Sbjct: 1067 LQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKALNLCKMVNKRM 1126

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q      ++  K  E    S +  +DL   E  E     +M       + +F
Sbjct: 1127 WSVQTPLRQFHGIPNEILMKL-EKKDLSWDRYYDLKPQEIGELIRFPKMGRT----LYKF 1181

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +R   ++T     E ++ G +E
Sbjct: 1182 IHQFPKLNLAAHVQPITRTVLRVELTITADFQWEDNVHGYVE 1223



 Score = 56.6 bits (135), Expect(2) = 1e-60
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
 Frame = -1

Query: 4393 LPEKYAPPTE-LLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAA 4217
            L +K  PP E  + +  +P  A   P+++ +    +  N +Q++V+       DNVL+ A
Sbjct: 481  LKQKPIPPDERFVKISEMPDWA--QPAFKGM----QQLNRVQSKVYETALFKADNVLLCA 534

Query: 4216 PTGSGKTICAEFALLR--LHQQSPE------NMRCVYIAPLEALAKERLRDWDDKFGRAL 4061
            PTG+GKT  A   +L+     ++P+      N + VY+AP++AL  E + +  ++     
Sbjct: 535  PTGAGKTNVAVLTILQQIALNRNPDGSFNNNNYKIVYVAPMKALVAEVVGNLSNR----- 589

Query: 4060 GLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
                             L++  +      +WD ++R+   R   Q V L I+DE+HL+
Sbjct: 590  -----------------LQEYGV------QWDIITRKSGDRTYTQLVKLLIIDEIHLL 624


>ref|XP_001757495.1| predicted protein [Physcomitrella patens] gi|162691189|gb|EDQ77552.1|
            predicted protein [Physcomitrella patens]
          Length = 2180

 Score = 1007 bits (2604), Expect(2) = 0.0
 Identities = 487/667 (73%), Positives = 570/667 (85%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            +  SQ EN+IRIVALS+SLANAKDLG+WIGAS+HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1506 YIGSQTENQIRIVALSTSLANAKDLGDWIGASSHGLFNFPPGVRPVPLEIHIQGVDIANF 1565

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IV H K  +PAL+FVPTRKHARLTALD+VTYA  +   +S FL C 
Sbjct: 1566 EARMQAMTKPTYTAIVHHVKKQEPALIFVPTRKHARLTALDLVTYATVNGNGKSPFLHCA 1625

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
            + DL PFLS+VK+  L H L  G+GYLHEGLS+ EQE+VT L TA AIQVCVA       
Sbjct: 1626 EADLAPFLSKVKDEALIHALLQGIGYLHEGLSAIEQEVVTSLLTAEAIQVCVATSSMCWG 1685

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQ+YDGRENAHTDYPITDLLQMMGRASRP +D SGKCVILCHAPRKEY
Sbjct: 1686 MTLSAHLVVVMGTQFYDGRENAHTDYPITDLLQMMGRASRPQVDTSGKCVILCHAPRKEY 1745

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYEPFPVESHLDH+LHDH+NAEVVV TIE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1746 YKKFLYEPFPVESHLDHYLHDHLNAEVVVRTIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1805

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVE+TL+DLE+SKCVA+E++M LSPLNLGMIA              
Sbjct: 1806 QGVSHRHLSDHLSELVESTLSDLESSKCVAIEDDMDLSPLNLGMIAAYYYISYTTIELFS 1865

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL++ASEY RLP+RPGE+E ++K++ HQRF+++ PK TDPHVKAN 
Sbjct: 1866 SSLTAKTKLKGLLEILSNASEYTRLPMRPGEDELIRKLVMHQRFSMDKPKFTDPHVKANA 1925

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHF+R  V+GNLALDQR++L+ ASRL+QAMVDVISS+GWL+PALA MELSQMVTQGL
Sbjct: 1926 LLQAHFARHSVSGNLALDQRDILIDASRLIQAMVDVISSSGWLHPALAAMELSQMVTQGL 1985

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS LLQ+P+FTKDLAKKC +NP K I+TVFDLVEMEDDERRELLQM+DA L++IAR 
Sbjct: 1986 WERDSYLLQLPYFTKDLAKKCADNPDKPIQTVFDLVEMEDDERRELLQMSDAQLMEIARV 2045

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL +EVL+ DD+  G++VT+QV LER++EGR E+SPVDAPR+PK K+EGWWLV
Sbjct: 2046 CNRFPNIDLAHEVLDNDDISPGDTVTLQVTLEREMEGRQELSPVDAPRFPKPKEEGWWLV 2105

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            + +P SNQLLAIKRV+LQR++KVKL+F AP +VG KTYTLFFMCD+YLGCDQE EFTI+V
Sbjct: 2106 VCEPKSNQLLAIKRVSLQRRSKVKLDFTAPNEVGRKTYTLFFMCDAYLGCDQENEFTIDV 2165

Query: 1908 QEAMEED 1888
            +E ++ +
Sbjct: 2166 KEGVDAE 2172



 Score =  402 bits (1032), Expect(2) = 0.0
 Identities = 190/236 (80%), Positives = 214/236 (90%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYFLLK QY +EDH+LSFTV I+EPLPPQYF+RVVSDRWLGS+T+LPV
Sbjct: 1255 VEDNDGENILHHEYFLLKMQYVEEDHNLSFTVPIYEPLPPQYFVRVVSDRWLGSETVLPV 1314

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPV+ALRNPSYE LY +F+HFNPIQTQVF VLYN+DDN
Sbjct: 1315 SFRHLILPEKYPPPTELLDLQPLPVSALRNPSYEVLYQKFRHFNPIQTQVFPVLYNTDDN 1374

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPENMRCVYIAPLEALAKERLRDWDDKFGRALGLK 4052
            VLVAAPTGSGKTICAEFA+LR+ Q+     RCVYIAP+EALAKERLRDW+ KFGR LG++
Sbjct: 1375 VLVAAPTGSGKTICAEFAVLRMLQKGEAGGRCVYIAPVEALAKERLRDWESKFGRTLGVR 1434

Query: 4051 VVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            VV+L GE+A D+KLLEK  IIISTPE+WD LSRRWKQRK VQQV+LF+VDELHL+G
Sbjct: 1435 VVELTGETATDMKLLEKGQIIISTPERWDVLSRRWKQRKHVQQVSLFVVDELHLIG 1490



 Score =  202 bits (515), Expect(2) = 8e-70
 Identities = 159/617 (25%), Positives = 277/617 (44%), Gaps = 13/617 (2%)
 Frame = -2

Query: 3870 ENKIRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQ 3694
            +  IR+V LS++L N +D+  ++      GLF F    RP PL     G+ +     R Q
Sbjct: 673  QEMIRLVGLSATLPNYEDVALFLKVDEKKGLFYFDNSYRPCPLAQQYIGVTVRKPLQRFQ 732

Query: 3693 AMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKED 3520
             M    +  +++ A G    L+FV +RK    TA  I     AN   G   +    ++E 
Sbjct: 733  LMNDICYEKVMEVA-GKHQVLIFVHSRKETAKTARAIRDAALANDTLGRFLKEDGASREI 791

Query: 3519 LDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXX 3340
            L      VK + L ++L +G    H G+  A++ LV  LF  G IQV V+          
Sbjct: 792  LQKENDVVKNNDLKNLLPYGFAIHHAGMGRADRTLVEDLFGDGHIQVLVSTATLAWGVNL 851

Query: 3339 SAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKK 3160
             AH V++ GTQ Y+  + A T+    D++QM+GRA RP  D  G+ +I+      +YY  
Sbjct: 852  PAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDTYGEGIIITGHSELQYYLS 911

Query: 3159 FLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGV 2980
             + +  P+ES     L D++NAE+V+G+++  ++A D+L +T+LY R+ +NP  Y   GV
Sbjct: 912  LMNQQLPIESQYISKLADNLNAEIVLGSVQDAREACDWLGYTYLYIRMLKNPTLY---GV 968

Query: 2979 SHR------HLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXX 2821
            S         L +  ++LV +    L+ +  V  + +  Y    +LG IA          
Sbjct: 969  SREALEADPSLEERRADLVHSAAIVLDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGSM 1028

Query: 2820 XXXXXXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHV 2641
                           L  + + + E+  + +R  E+  + K++      ++     +P  
Sbjct: 1029 ATYNEHLKPTMGDIELCRLFSLSEEFKFVTVREEEKMELAKLLDRVPIPVKE-SLEEPSA 1087

Query: 2640 KANVLLQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQM 2464
            K NVLLQA+ S+  + G +L  D   +  SA RL++A+ +++   GW   A   + L +M
Sbjct: 1088 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKALTLCKM 1147

Query: 2463 VTQGLWERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLL 2284
            V++ +W   + L Q      D+  K  E      E  +DL   E  E     +M  +   
Sbjct: 1148 VSRRMWSSQTPLRQFKGIPNDILSKV-EKKDLPWERYYDLSSQEIGELIRYPKMGKS--- 1203

Query: 2283 DIARFCNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQK 2110
             I R+ ++FP ++L  + + + R  ++   ++T     +    G +              
Sbjct: 1204 -IHRYIHQFPKLELAAHVQPITRSVLKVDLTITPDFQWDEKYHGYV-------------- 1248

Query: 2109 DEGWWLVIGDPSSNQLL 2059
             E +W+++ D     +L
Sbjct: 1249 -ESFWVIVEDNDGENIL 1264



 Score = 92.0 bits (227), Expect(2) = 8e-70
 Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 8/176 (4%)
 Frame = -1

Query: 4390 PEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPT 4211
            P+ +A   EL+ +  +P  A   P+++ +    K  N +Q++V+     + +N+L+ APT
Sbjct: 482  PKPFAEGEELVKISDMPDWA--QPAFKGM----KSLNRVQSKVYETALFTSENLLLCAPT 535

Query: 4210 GSGKTICAEFALLR---LHQQSP-----ENMRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            G+GKT  A   +L    L +Q        + + VY+AP++AL  E + ++ ++     G+
Sbjct: 536  GAGKTNVAMLTILHELGLRKQLDGTFDLSSFKIVYVAPMKALVAEMVGNFSERL-EPYGV 594

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
             V +L G++      +E+  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 595  TVRELTGDATLSRGQIEETQIIVTTPEKWDIITRKSGDRTYTQMVKLLIIDEIHLL 650


>gb|ESW21254.1| hypothetical protein PHAVU_005G055300g [Phaseolus vulgaris]
            gi|561022525|gb|ESW21255.1| hypothetical protein
            PHAVU_005G055300g [Phaseolus vulgaris]
          Length = 2184

 Score = 1006 bits (2600), Expect(2) = 0.0
 Identities = 494/663 (74%), Positives = 560/663 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1513 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1572

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPAL+FVPTRKH RLTA+D++TY+ ADSGE+  FL   
Sbjct: 1573 EARMQAMTKPTYTAIVQHAKNRKPALIFVPTRKHVRLTAVDLITYSGADSGEKP-FLLRP 1631

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PFL ++++  L   L  GVGYLHEGL+S + ++VT LF AG IQVCV        
Sbjct: 1632 PEELEPFLEKIRDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFDAGWIQVCVLNSSMCWG 1691

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENA TDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1692 VTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEY 1751

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1752 YKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1811

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE+VENTL+DLEASKC+ +EE+M LSPLNLGMIA              
Sbjct: 1812 QGVSHRHLSDHLSEMVENTLSDLEASKCITIEEDMDLSPLNLGMIASYYYISYTTIERFS 1871

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL+SASEYA+LPIRPGEEE V+K+I HQRF+ ENPK TDPHVKAN 
Sbjct: 1872 SSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRFSFENPKVTDPHVKANA 1931

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLALDQ+EVLLSA+RLLQAMVDVISSNGWL+ AL TME+SQMVTQG+
Sbjct: 1932 LLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLSLALLTMEVSQMVTQGM 1991

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAKKCQENPGKSIETVFDL+EMEDDER ELL M+D+ LLDIARF
Sbjct: 1992 WERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDDERHELLGMSDSQLLDIARF 2051

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+YEVL+ D VR GE VT+ V LERDLEG+ EI PVDAPRYPK K+EGWWLV
Sbjct: 2052 CNRFPNIDLSYEVLDSDSVRAGEDVTLLVTLERDLEGKTEIGPVDAPRYPKAKEEGWWLV 2111

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +N LLAIKRV+L RK K KLEF AP D G K+Y L+FMCDSYLGCDQEY FT++V
Sbjct: 2112 VGDTKTNLLLAIKRVSLHRKLKAKLEFAAPADTGRKSYALYFMCDSYLGCDQEYGFTVDV 2171

Query: 1908 QEA 1900
            +EA
Sbjct: 2172 KEA 2174



 Score =  400 bits (1027), Expect(2) = 0.0
 Identities = 193/237 (81%), Positives = 214/237 (90%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHE+F+LKKQY DEDH L+FTV I+EPLPPQYFI VVSD+WLGSQT+LPV
Sbjct: 1261 VEDNDGEYILHHEFFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIHVVSDKWLGSQTVLPV 1320

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1321 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNSDDN 1380

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VY+AP+E+LAKER RDW+ KFG  L L
Sbjct: 1381 VLVAAPTGSGKTICAEFAILRNHQKVPDSVMRVVYVAPIESLAKERYRDWEKKFGGGLKL 1440

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLEK  IIISTPEKWDALSRRWKQRK VQ V+LFI+DELHL+G
Sbjct: 1441 RVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKQVQLVSLFIIDELHLIG 1497



 Score =  207 bits (527), Expect(2) = 8e-70
 Identities = 159/582 (27%), Positives = 274/582 (47%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF F    RPVPL     GI +     R Q M 
Sbjct: 682  IRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMN 741

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  I   A        +FL+    ++E L 
Sbjct: 742  DICYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDAA-LGKDTLGRFLKEDSASREILQ 799

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H G++  +++LV  LF  G +QV V+           A
Sbjct: 800  THTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHVQVLVSTATLAWGVNLPA 859

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   +
Sbjct: 860  HTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYYLSLM 919

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL-QGVS 2977
             +  P+ES     L D +NAE+V+GT+++ ++A +++ +T+LY R+ +NP+ Y +   V 
Sbjct: 920  NQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRMLRNPSLYGIAPDVL 979

Query: 2976 HRH--LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
             R   L +  ++L+    + L+ +  V  + +  Y    +LG IA               
Sbjct: 980  TRDITLEERRADLIHTAASILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNE 1039

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K++      I+     +P  K NVL
Sbjct: 1040 HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVL 1098

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RLL+A+ +++   GW   A   + L +MVT+ +
Sbjct: 1099 LQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRM 1158

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q    + DL  K  E    + E  +DL   E  E     +M       + RF
Sbjct: 1159 WSVQTPLRQFNGISSDLLTKL-EKKDLAWERYYDLSSQEIGELIRAPKMGRT----LHRF 1213

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +R   ++T   A +  + G +E
Sbjct: 1214 IHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVE 1255



 Score = 87.4 bits (215), Expect(2) = 8e-70
 Identities = 52/172 (30%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
 Frame = -1

Query: 4375 PPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPTGSGKT 4196
            P  +L+ +  +P  A   P+++ +       N +Q++V+       DN+L+ APTG+GKT
Sbjct: 492  PNEKLVKISSMPDWA--QPAFKGM----SQLNRVQSKVYDTALFKPDNLLLCAPTGAGKT 545

Query: 4195 ICAEFALLR--LHQQSPEN-------MRCVYIAPLEALAKERLRDWDDKFGRALGLKVVD 4043
              A   +L+     ++PE+        + VY+AP++AL  E + +  ++  +   +KV +
Sbjct: 546  NVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRL-QEYDVKVRE 604

Query: 4042 LQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
            L G+ +   + +E+  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 605  LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 656


>ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago
            truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear
            ribonucleoprotein 200 kDa helicase [Medicago truncatula]
          Length = 2223

 Score = 1005 bits (2599), Expect(2) = 0.0
 Identities = 488/663 (73%), Positives = 563/663 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + SSQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1558 YISSQLENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1617

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +TSI QHAK  KPA+VFVPTRKH RLTA+D++TY+ ADSGE+  FL  +
Sbjct: 1618 EARMQAMTKPTYTSIAQHAKNKKPAIVFVPTRKHVRLTAVDLITYSGADSGEKP-FLLRS 1676

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF++++ +  L   L  GVGYLHEGL+S + ++V  LF AG IQVCV        
Sbjct: 1677 LEELEPFINKISDEMLKVTLREGVGYLHEGLNSLDHDIVAQLFEAGWIQVCVLSSSMCWG 1736

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENA TDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1737 VTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEY 1796

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1797 YKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1856

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE+VENTL+DLEASKCV++E++M LSPLNLGMIA              
Sbjct: 1857 QGVSHRHLSDHLSEMVENTLSDLEASKCVSIEDDMDLSPLNLGMIASYYYISYTTIERFS 1916

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+E+L+SASEYA LPIRPGEEE V+++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1917 SSLTSKTKMKGLLEVLSSASEYAHLPIRPGEEEVVRRLINHQRFSFENPKVTDPHVKANA 1976

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNL+LDQREVLLSA+RLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1977 LLQAHFSRQSVGGNLSLDQREVLLSANRLLQAMVDVISSNGWLSMALLAMEVSQMVTQGM 2036

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAKKCQENPG+SIETVFDL+EMEDDERRELL MTD+ LLDIARF
Sbjct: 2037 WERDSMLLQLPHFTKDLAKKCQENPGRSIETVFDLLEMEDDERRELLNMTDSQLLDIARF 2096

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+YE+L+ D+VR G+ +T+QV LERDLEG+ E+ PVDAPRYPK K+EGWWLV
Sbjct: 2097 CNRFPNIDLSYEILDNDNVRAGDDITLQVTLERDLEGKTEVGPVDAPRYPKAKEEGWWLV 2156

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +N LLAIKRV+LQRK K KLEF AP D G+K+Y L+FMCDSY+GCDQEY FT++V
Sbjct: 2157 VGDTKTNMLLAIKRVSLQRKLKAKLEFAAPADAGKKSYVLYFMCDSYMGCDQEYGFTLDV 2216

Query: 1908 QEA 1900
            +EA
Sbjct: 2217 KEA 2219



 Score =  407 bits (1045), Expect(2) = 0.0
 Identities = 198/237 (83%), Positives = 216/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYFLLKKQY +EDH L+FTV I+EPLPPQYFIRVVSD+WLGSQT+LPV
Sbjct: 1306 VEDNDGEYILHHEYFLLKKQYIEEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPV 1365

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1366 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNSDDN 1425

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VYIAP+EALAKER RDW+ KFG  L L
Sbjct: 1426 VLVAAPTGSGKTICAEFAILRNHQKLPDSVMRVVYIAPVEALAKERYRDWEKKFGGGLKL 1485

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            KVV+L GE+A DLKLLEK  +IISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1486 KVVELTGETATDLKLLEKGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1542



 Score =  190 bits (483), Expect(2) = 8e-64
 Identities = 166/620 (26%), Positives = 275/620 (44%), Gaps = 49/620 (7%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++    + GLF F    RPVPL     GI I     R Q M 
Sbjct: 690  IRLVGLSATLPNYEDVALFLRVDLNKGLFYFDNSYRPVPLSQQYIGITIKKPLQRFQLMN 749

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  I   A AD     +FL+    ++E L 
Sbjct: 750  DICYRKVLDVA-GKHQVLIFVHSRKETAKTARAIRDAALADD-TLGRFLKEDSASREILH 807

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK S L  +L +G    H G++  +++LV  LF  G  QV V+           A
Sbjct: 808  THTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPA 867

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +IL      +YY   +
Sbjct: 868  HTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIILTGHSELQYYLSLM 927

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL-QGVS 2977
             +  P+ES     L D +NAE+V+GT+++ ++A  ++ +T+LY R+ +NP+ Y L   V 
Sbjct: 928  NQQLPIESQFISKLADQLNAEIVLGTVQNAKEACHWIGYTYLYVRMLRNPSLYGLAPDVL 987

Query: 2976 HRHL------SDHLSELVE-----------NTLTDLEASKCVAVEEEM-YLSPLNLGMIA 2851
             R +      +D   EL+E              T L+ +  V  + +  Y    +LG IA
Sbjct: 988  SRDITLEERRADLFIELLEKGTKSLWTIIHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1047

Query: 2850 XXXXXXXXXXXXXXXXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAI 2671
                                     L  + + + E+  + +R  E+  + K++      I
Sbjct: 1048 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1107

Query: 2670 ENPKPTDPHVKANVLLQAHFSRFVVAGNLALDQREVLL---------------------- 2557
            +     +P  K NVLLQA+ S+  + G L++    V +                      
Sbjct: 1108 KE-SLEEPSAKINVLLQAYISQLKLEG-LSMTSDMVFITQFIRSGVPLILLFADSCIMFL 1165

Query: 2556 --SASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLWERDSVLLQIPHFTKDLAKKCQ 2383
              SA RLL+A+ +++   GW   A   + L +MVT+ +W   + L Q      D+  K  
Sbjct: 1166 FQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDVLTKL- 1224

Query: 2382 ENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFCNRFPNIDL--NYEVLERDDVR 2209
            E    + E  +DL   E  E     +M       + RF ++FP ++L  + + + R  + 
Sbjct: 1225 EKKDLAWERYYDLSSQEIGELIRAPKMGRT----LHRFIHQFPKLNLAAHVQPITRTVLG 1280

Query: 2208 TGESVTVQVALERDLEGRLE 2149
               ++T   A +  + G +E
Sbjct: 1281 VELTITPDFAWDDRMHGYVE 1300



 Score = 84.3 bits (207), Expect(2) = 8e-64
 Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 13/196 (6%)
 Frame = -1

Query: 4435 GSQTILPVSFRHLILPEKYAPPTE----LLDLQPLPVTALRNPSYEALYHQFKHFNPIQT 4268
            GS   L   +  + +P   A P +    LL +  +P  A   P+++ +       N +Q+
Sbjct: 476  GSYRHLEKGYEEIHVPALKAKPLDPNEKLLKISAMPDWA--QPAFKGM----TQLNRVQS 529

Query: 4267 QVFTVLYNSDDNVLVAAPTGSGKTICAEFALLRL---HQQSPENM------RCVYIAPLE 4115
            +V+       DN+L+ APTG+GKT  A   +L+    H+ + +        + VY+AP++
Sbjct: 530  KVYETALFKPDNLLLCAPTGAGKTNVAVLTILQQIARHRNTDDGSIDHSAYKIVYVAPMK 589

Query: 4114 ALAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRK 3935
            AL  E + +  ++  +   + V +L G+ +   + +E+  II++TPEKWD ++R+   R 
Sbjct: 590  ALVAEVVGNLSNRL-QDYNVTVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRT 648

Query: 3934 VVQQVNLFIVDELHLM 3887
              Q V L I+DE+HL+
Sbjct: 649  YTQLVKLVIIDEIHLL 664


>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
            200 kDa helicase-like [Cucumis sativus]
          Length = 2175

 Score = 1001 bits (2589), Expect(2) = 0.0
 Identities = 486/667 (72%), Positives = 569/667 (85%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKD+G+WIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1506 YIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1565

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPA+VFVPTRKH RLTA+DI+TY++AD+GE+  FL  +
Sbjct: 1566 EARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEKLPFLLRS 1625

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             ED++PF+ ++ +  L  +L HGVGYLHEGLSS +QE+VT LF AG IQVCV        
Sbjct: 1626 LEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVISSSMCWG 1685

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDL+QMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1686 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILCHAPRKEY 1745

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDY+TWT +YRRLTQNPNYYNL
Sbjct: 1746 YKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQNPNYYNL 1805

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVE+TL+DLEASKC+++E++M LSP NLGMIA              
Sbjct: 1806 QGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISYTTIERFS 1865

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA LPIRPGEEE ++++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1866 SSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTDPHVKANA 1925

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQA+FSR  V GNLALDQREV++SASRLLQAMVDVISSNGWL+ AL  ME+SQMVTQGL
Sbjct: 1926 LLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGL 1985

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTK+LAK+CQEN GK+IET+FDLVEMED+ER ELLQM+D+ LLDIARF
Sbjct: 1986 WERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQLLDIARF 2045

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID+ YEVL+ ++V  GE+VT+QV LERDL+GR E+ PVDA RYPK K+EGWWLV
Sbjct: 2046 CNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAKEEGWWLV 2105

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRV+LQRKAKVKL+F AP D G+K+YTL+FMCDSYLGCDQEY FT++V
Sbjct: 2106 VGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQEYSFTVDV 2165

Query: 1908 QEAMEED 1888
            ++A   D
Sbjct: 2166 KDAAAFD 2172



 Score =  397 bits (1021), Expect(2) = 0.0
 Identities = 193/237 (81%), Positives = 214/237 (90%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE I HHE+FLLKKQY DEDH L+FTV I EPLPPQYFIRVVSDRWLGSQTILPV
Sbjct: 1254 VEDNDGEFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPV 1313

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEK+ PP ELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYN+DDN
Sbjct: 1314 SFRHLILPEKFPPPMELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDN 1373

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR +Q+  +N +R VYIAP+E+LAKER RDWD KFG+ LG+
Sbjct: 1374 VLVAAPTGSGKTICAEFAILRNYQKGQDNVLRAVYIAPIESLAKERYRDWDKKFGKGLGI 1433

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLE+  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1434 RVVELTGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1490



 Score =  209 bits (531), Expect(2) = 5e-70
 Identities = 158/582 (27%), Positives = 275/582 (47%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPV L     GI +     R Q M 
Sbjct: 675  IRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYIGITVKKPLQRFQLMN 734

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  I   A A+    S+FL+    ++E L 
Sbjct: 735  DLCYEKVMSFA-GKHQVLIFVHSRKETSKTARAIRDAALAND-TLSRFLKEDSASREILH 792

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H G++  +++LV  LF  G IQV V+           A
Sbjct: 793  THTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLVSTATLAWGVNLPA 852

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G  +I+      +YY   +
Sbjct: 853  HCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIIITGHSELQYYLSLM 912

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSH 2974
             +  P+ES     L D +NAE+V+GT+++ ++A ++L +T+LY R+ +NP  Y L   + 
Sbjct: 913  NQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRMLRNPTLYGLAADAP 972

Query: 2973 RH---LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
                 L +  ++L+ +  T L+ +  V  + +  Y    +LG IA               
Sbjct: 973  TRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNE 1032

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K+++     I+     +P  K NVL
Sbjct: 1033 HLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE-SLEEPSAKINVL 1091

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RL++A+ +++   GW   A   + L +MV++ +
Sbjct: 1092 LQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKALNLCKMVSKRM 1151

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q    + D+  K  E    + E  +DL   E  E     +M       + +F
Sbjct: 1152 WSVQTPLRQFHGISNDILMKL-EKKDLAWERYYDLSSQELGELIRAPKMGRT----LHKF 1206

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +R   ++T     E  + G +E
Sbjct: 1207 IHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVE 1248



 Score = 86.7 bits (213), Expect(2) = 5e-70
 Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
 Frame = -1

Query: 4282 NPIQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFALLR---LHQQ-----SPENMRCVYI 4127
            N +Q++V+       DNVL+ APTG+GKT  A   +L+   LH       +  + + VY+
Sbjct: 511  NRVQSKVYETALFKADNVLLCAPTGAGKTNVAVLTILQQIALHTNPDGSYNHNDYKIVYV 570

Query: 4126 APLEALAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRW 3947
            AP++AL  E + +  ++  +  G+KV +L G+     + +++  II++TPEKWD ++R+ 
Sbjct: 571  APMKALVAEVVGNLSNRL-QDYGVKVRELSGDQTLTRQQIDETQIIVTTPEKWDIITRKS 629

Query: 3946 KQRKVVQQVNLFIVDELHLM 3887
              R   Q V L I+DE+HL+
Sbjct: 630  GDRTYTQLVKLLIIDEIHLL 649


>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Cucumis sativus]
          Length = 2175

 Score = 1001 bits (2589), Expect(2) = 0.0
 Identities = 486/667 (72%), Positives = 569/667 (85%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKD+G+WIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1506 YIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1565

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPA+VFVPTRKH RLTA+DI+TY++AD+GE+  FL  +
Sbjct: 1566 EARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEKLPFLLRS 1625

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             ED++PF+ ++ +  L  +L HGVGYLHEGLSS +QE+VT LF AG IQVCV        
Sbjct: 1626 LEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVISSSMCWG 1685

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDL+QMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1686 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILCHAPRKEY 1745

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDY+TWT +YRRLTQNPNYYNL
Sbjct: 1746 YKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQNPNYYNL 1805

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVE+TL+DLEASKC+++E++M LSP NLGMIA              
Sbjct: 1806 QGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISYTTIERFS 1865

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA LPIRPGEEE ++++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1866 SSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTDPHVKANA 1925

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQA+FSR  V GNLALDQREV++SASRLLQAMVDVISSNGWL+ AL  ME+SQMVTQGL
Sbjct: 1926 LLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGL 1985

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTK+LAK+CQEN GK+IET+FDLVEMED+ER ELLQM+D+ LLDIARF
Sbjct: 1986 WERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQLLDIARF 2045

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID+ YEVL+ ++V  GE+VT+QV LERDL+GR E+ PVDA RYPK K+EGWWLV
Sbjct: 2046 CNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAKEEGWWLV 2105

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRV+LQRKAKVKL+F AP D G+K+YTL+FMCDSYLGCDQEY FT++V
Sbjct: 2106 VGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQEYSFTVDV 2165

Query: 1908 QEAMEED 1888
            ++A   D
Sbjct: 2166 KDAAAFD 2172



 Score =  400 bits (1027), Expect(2) = 0.0
 Identities = 194/237 (81%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE I HHE+FLLKKQY DEDH L+FTV I EPLPPQYFIRVVSDRWLGSQTILPV
Sbjct: 1254 VEDNDGEFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPV 1313

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEK+ PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYN+DDN
Sbjct: 1314 SFRHLILPEKFPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDN 1373

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR +Q+  +N +R VYIAP+E+LAKER RDWD KFG+ LG+
Sbjct: 1374 VLVAAPTGSGKTICAEFAILRNYQKGQDNVLRAVYIAPIESLAKERYRDWDKKFGKGLGI 1433

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLE+  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1434 RVVELTGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1490



 Score =  209 bits (531), Expect(2) = 5e-70
 Identities = 158/582 (27%), Positives = 275/582 (47%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPV L     GI +     R Q M 
Sbjct: 675  IRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYIGITVKKPLQRFQLMN 734

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  I   A A+    S+FL+    ++E L 
Sbjct: 735  DLCYEKVMSFA-GKHQVLIFVHSRKETSKTARAIRDAALAND-TLSRFLKEDSASREILH 792

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H G++  +++LV  LF  G IQV V+           A
Sbjct: 793  THTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLVSTATLAWGVNLPA 852

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G  +I+      +YY   +
Sbjct: 853  HCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIIITGHSELQYYLSLM 912

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSH 2974
             +  P+ES     L D +NAE+V+GT+++ ++A ++L +T+LY R+ +NP  Y L   + 
Sbjct: 913  NQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRMLRNPTLYGLAADAP 972

Query: 2973 RH---LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
                 L +  ++L+ +  T L+ +  V  + +  Y    +LG IA               
Sbjct: 973  TRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNE 1032

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K+++     I+     +P  K NVL
Sbjct: 1033 HLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE-SLEEPSAKINVL 1091

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RL++A+ +++   GW   A   + L +MV++ +
Sbjct: 1092 LQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEKALNLCKMVSKRM 1151

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q    + D+  K  E    + E  +DL   E  E     +M       + +F
Sbjct: 1152 WSVQTPLRQFHGISNDILMKL-EKKDLAWERYYDLSSQELGELIRAPKMGRT----LHKF 1206

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +R   ++T     E  + G +E
Sbjct: 1207 IHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVE 1248



 Score = 86.7 bits (213), Expect(2) = 5e-70
 Identities = 48/140 (34%), Positives = 82/140 (58%), Gaps = 8/140 (5%)
 Frame = -1

Query: 4282 NPIQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFALLR---LHQQ-----SPENMRCVYI 4127
            N +Q++V+       DNVL+ APTG+GKT  A   +L+   LH       +  + + VY+
Sbjct: 511  NRVQSKVYETALFKADNVLLCAPTGAGKTNVAVLTILQQIALHTNPDGSYNHNDYKIVYV 570

Query: 4126 APLEALAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRW 3947
            AP++AL  E + +  ++  +  G+KV +L G+     + +++  II++TPEKWD ++R+ 
Sbjct: 571  APMKALVAEVVGNLSNRL-QDYGVKVRELSGDQTLTRQQIDETQIIVTTPEKWDIITRKS 629

Query: 3946 KQRKVVQQVNLFIVDELHLM 3887
              R   Q V L I+DE+HL+
Sbjct: 630  GDRTYTQLVKLLIIDEIHLL 649


>ref|XP_004488845.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            isoform X1 [Cicer arietinum]
            gi|502089221|ref|XP_004488846.1| PREDICTED: U5 small
            nuclear ribonucleoprotein 200 kDa helicase-like isoform
            X2 [Cicer arietinum]
          Length = 2187

 Score = 1001 bits (2587), Expect(2) = 0.0
 Identities = 488/663 (73%), Positives = 559/663 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1517 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1576

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+I QHAK  KPALVFVPTRKH RLTA+D++TY+ ADS E+  FL   
Sbjct: 1577 EARMQAMTKPTYTAIAQHAKNRKPALVFVPTRKHVRLTAVDMITYSGADSSEKP-FLLRP 1635

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+++V +  L   L  GVGYLHEGL + + ++V  LF AG IQVCV        
Sbjct: 1636 IEELEPFINKVSDEMLKVTLREGVGYLHEGLDNLDHDIVAQLFEAGWIQVCVLSSSMCWG 1695

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENA TDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1696 VTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEY 1755

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1756 YKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1815

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE+VENTL+DLEASKCVA+E++M LSPLNLGMIA              
Sbjct: 1816 QGVSHRHLSDHLSEMVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISYTTIERFS 1875

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+E+L+SASEYA LPIRPGE+E V+++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1876 SSLTSKTKMKGLLEVLSSASEYAHLPIRPGEDELVRRLINHQRFSFENPKVTDPHVKANA 1935

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLALDQREVLLSA+RLLQAMVDVISSNGWL  AL  ME+SQMVTQG+
Sbjct: 1936 LLQAHFSRQFVGGNLALDQREVLLSANRLLQAMVDVISSNGWLTMALLAMEVSQMVTQGM 1995

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAKKCQENPG+SIETVFDL+EMEDDERRELL MTD+ LLDIARF
Sbjct: 1996 WERDSMLLQLPHFTKDLAKKCQENPGRSIETVFDLLEMEDDERRELLNMTDSQLLDIARF 2055

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+YE+L+ D+VR GE +T+QV LERDLEG+ E+ PVDAPRYPK K+EGWWLV
Sbjct: 2056 CNRFPNIDLSYEILDNDNVRAGEDITLQVTLERDLEGKTEVGPVDAPRYPKTKEEGWWLV 2115

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +N LLAIKRV+LQRK K KLEF AP D G+K+Y L+FMCDSY+GCDQEY FT++V
Sbjct: 2116 VGDTKTNMLLAIKRVSLQRKLKAKLEFAAPADAGKKSYVLYFMCDSYMGCDQEYGFTLDV 2175

Query: 1908 QEA 1900
            +EA
Sbjct: 2176 KEA 2178



 Score =  405 bits (1042), Expect(2) = 0.0
 Identities = 197/237 (83%), Positives = 216/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYFLLKKQY +EDH L+FTV I+EPLPPQYFIRVVSD+WLGSQT+LPV
Sbjct: 1265 VEDNDGEYILHHEYFLLKKQYIEEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPV 1324

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY +FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1325 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPVQTQVFTVLYNSDDN 1384

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VYIAP+EALAKER RDW  KFG  L L
Sbjct: 1385 VLVAAPTGSGKTICAEFAILRNHQKGPDSVMRVVYIAPIEALAKERYRDWKKKFGGGLEL 1444

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A D+KLLEK  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1445 RVVELTGETATDVKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1501



 Score =  206 bits (523), Expect(2) = 6e-69
 Identities = 158/582 (27%), Positives = 272/582 (46%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++    + GLF F    RPVPL     GI +     R Q M 
Sbjct: 686  IRLVGLSATLPNYEDVALFLRVDLNKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMN 745

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  I   A A+    S+FL+    ++E L 
Sbjct: 746  DICYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDAALAND-TLSRFLKEDSASREILH 803

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK S L  +L +G    H G++  +++LV  LF  G  QV V+           A
Sbjct: 804  THTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPA 863

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   +
Sbjct: 864  HTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYYLSLM 923

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQG--- 2983
             +  P+ES     L D +NAE+V+GT+++ ++A  ++ +T+LY R+ +NP+ Y +     
Sbjct: 924  NQQLPIESQFISKLADQLNAEIVLGTVQNAKEACHWIGYTYLYVRMLRNPSLYGIAPDVL 983

Query: 2982 VSHRHLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
                 L +  ++L+    T L+ +  V  + +  Y    +LG IA               
Sbjct: 984  TKDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNE 1043

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K++      I+     +P  K NVL
Sbjct: 1044 HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVL 1102

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G ++  D   +  SA RLL+A+ +++   GW   A   + L +MVT+ +
Sbjct: 1103 LQAYISQLKLEGLSMTSDMVFITQSAGRLLRALFEIVVKRGWAQLAEKALNLCKMVTKRM 1162

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q      D+  K  E    + E  +DL   E  E     +M       + +F
Sbjct: 1163 WSVQTPLRQFNGIPNDILTKL-EKKDLAWERYYDLSSQEIGELIRAPKMGRT----LHKF 1217

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +    +VT   A +  + G +E
Sbjct: 1218 IHQFPKLNLAAHVQPITRTVLGVELTVTPDFAWDDRIHGYVE 1259



 Score = 85.9 bits (211), Expect(2) = 6e-69
 Identities = 56/196 (28%), Positives = 103/196 (52%), Gaps = 13/196 (6%)
 Frame = -1

Query: 4435 GSQTILPVSFRHLILPEKYAPPTE----LLDLQPLPVTALRNPSYEALYHQFKHFNPIQT 4268
            GS   L   +  + +P   A P +    L+ +  +P  A   P+++ +       N +Q+
Sbjct: 472  GSYRHLSKGYEEIHVPALKAKPLDPNEKLVKISAMPDWA--QPAFKGM----TQLNRVQS 525

Query: 4267 QVFTVLYNSDDNVLVAAPTGSGKTICAEFALLR--LHQQSPEN-------MRCVYIAPLE 4115
            +V+       DN+L+ APTG+GKT  A   +L+     ++P +        + VY+AP++
Sbjct: 526  KVYETALFKPDNLLLCAPTGAGKTNVAVLTILQQIARHRNPNDGSIDHTAYKIVYVAPMK 585

Query: 4114 ALAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRK 3935
            AL  E + +  ++  +   +KV +L G+ +   + +E+  II++TPEKWD ++R+   R 
Sbjct: 586  ALVAEVVGNLSNRLEK-YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRT 644

Query: 3934 VVQQVNLFIVDELHLM 3887
              Q V L I+DE+HL+
Sbjct: 645  YTQLVKLLIIDEIHLL 660


>gb|EOY19725.1| U5 small nuclear ribonucleoprotein helicase, putative isoform 2
            [Theobroma cacao]
          Length = 2062

 Score =  999 bits (2584), Expect(2) = 0.0
 Identities = 489/667 (73%), Positives = 563/667 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1391 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1450

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T++VQHAK  KPA+VFVPTRKH RLTA+D+++Y+  D+ E   F   +
Sbjct: 1451 EARMQAMTKPTYTAVVQHAKNGKPAIVFVPTRKHVRLTAVDLMSYSKVDN-EEPAFRLRS 1509

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L PF+ ++ E TL   L HGVGYLHEGL+S +QE+V+ LF AG IQVCV        
Sbjct: 1510 AEELKPFVDKISEETLRTTLEHGVGYLHEGLNSLDQEVVSQLFEAGWIQVCVMSSSLCWG 1569

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1570 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1629

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD+ NAE+V   IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1630 YKKFLYEAFPVESHLHHFLHDNFNAEIVALVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1689

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTLTDLEASKC+ +E++M LSPLNLGMIA              
Sbjct: 1690 QGVSHRHLSDHLSELVENTLTDLEASKCITIEDDMDLSPLNLGMIASYYYISYTTIERFS 1749

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA+LPIRPGEE+ ++++I HQRF+ ENP+ TDPHVKAN 
Sbjct: 1750 SSLTSKTKMKGLLEILASASEYAQLPIRPGEEDVLRRLINHQRFSFENPRCTDPHVKANA 1809

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHF+R  V GNLALDQREVLL A+RLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1810 LLQAHFTRQHVGGNLALDQREVLLYATRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1869

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGK+IET+FDLVEMEDDERRELLQM+D  LLDIA+F
Sbjct: 1870 WERDSMLLQLPHFTKDLAKRCQENPGKNIETIFDLVEMEDDERRELLQMSDLQLLDIAKF 1929

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+Y+VLE ++VR GE+VT+QV LERDLEGR E+ PVDAPRYPK K+EGWWLV
Sbjct: 1930 CNRFPNIDLSYDVLEGENVRAGENVTLQVTLERDLEGRTEVGPVDAPRYPKAKEEGWWLV 1989

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +G+  SNQLLAIKRV+LQRKAKVKLEF AP +  +K YTL+FMCDSYLGCDQEY FT++ 
Sbjct: 1990 VGETRSNQLLAIKRVSLQRKAKVKLEFAAPTEAAKKAYTLYFMCDSYLGCDQEYNFTVDA 2049

Query: 1908 QEAMEED 1888
            +EA   D
Sbjct: 2050 KEAAGPD 2056



 Score =  410 bits (1055), Expect(2) = 0.0
 Identities = 197/237 (83%), Positives = 218/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE +LHHEYFLLKKQY DEDH L+FTV I+EPLPPQYFIRVVSD+WLGSQTILPV
Sbjct: 1139 VEDNDGEYVLHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPV 1198

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYN+DDN
Sbjct: 1199 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDN 1258

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VYIAPLEA+AKER RDW+ KFGR LG+
Sbjct: 1259 VLVAAPTGSGKTICAEFAILRNHQKGPDSIMRVVYIAPLEAIAKERYRDWEKKFGRGLGM 1318

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE++ DLKLLEK  I+ISTPEKWDALSRRWKQRK VQQV++FIVDELHL+G
Sbjct: 1319 RVVELTGETSMDLKLLEKGQIVISTPEKWDALSRRWKQRKYVQQVSVFIVDELHLIG 1375



 Score =  214 bits (546), Expect(2) = 4e-72
 Identities = 160/582 (27%), Positives = 277/582 (47%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGAST-HGLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPVPL     GI +     R Q M 
Sbjct: 560  IRLVGLSATLPNYEDVALFLRVDLKEGLFHFDNSYRPVPLSQQYIGITVKKPLQRFQLMN 619

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  +   A A+    S+FL+    ++E L 
Sbjct: 620  DICYEKVMAVA-GKHQVLIFVHSRKETTKTARAVRDTALAND-TLSRFLKEDAASREILQ 677

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H GL+  ++++V  LF  G +QV V+           A
Sbjct: 678  SHTDMVKSNDLKDLLPYGFAIHHAGLARTDRQIVEELFADGHVQVLVSTATLAWGVNLPA 737

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y   + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   +
Sbjct: 738  HTVIIKGTQIYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLM 797

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQG-VS 2977
             +  P+ES     L D +NAE+V+GT+++ ++A +++T+T+LY R+ +NP  Y L   V 
Sbjct: 798  NQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWITYTYLYVRMLRNPTLYGLPADVL 857

Query: 2976 HRHLS--DHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
             R L+  +  ++L+ +  T L+ +  V  + +  Y    +LG IA               
Sbjct: 858  SRDLTLDERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNE 917

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K++      I+     +P  K NVL
Sbjct: 918  HLKPTMGDIELYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVL 976

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RLL+A+ +++   GW   A   + L +MVT+ +
Sbjct: 977  LQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRM 1036

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q      ++  K  E    + +  +DL   E  E     +M       + RF
Sbjct: 1037 WNVQTPLRQFHGIPNEILMKL-EKKDLAWDRYYDLSSQEIGELIRFQKMGRT----LHRF 1091

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +R   ++T     E  + G +E
Sbjct: 1092 IHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVE 1133



 Score = 87.8 bits (216), Expect(2) = 4e-72
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
 Frame = -1

Query: 4378 APPTELLDLQPLPVTALRNPSY-EALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPTGSG 4202
            AP ++ L+     V     P + +  +   +  N +Q++V+     + DN+L+ APTG+G
Sbjct: 363  APKSKPLESDERLVKISEMPEWAQPAFKGMQQLNRVQSKVYETALFAADNILLCAPTGAG 422

Query: 4201 KTICAEFALLR---LHQQSP-----ENMRCVYIAPLEALAKERLRDWDDKFGRALGLKVV 4046
            KT  A   +L+   L+  S       N + VY+AP++AL  E + +   +   A G+ V 
Sbjct: 423  KTNVAVLTILQQLALNMDSDGSINHSNYKIVYVAPMKALVAEVVGNLSHRL-EAYGVTVR 481

Query: 4045 DLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
            +L G+     + +++  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 482  ELSGDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 534


>gb|EOY19724.1| U5 small nuclear ribonucleoprotein helicase, putative isoform 1
            [Theobroma cacao]
          Length = 2176

 Score =  999 bits (2584), Expect(2) = 0.0
 Identities = 489/667 (73%), Positives = 563/667 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1505 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1564

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T++VQHAK  KPA+VFVPTRKH RLTA+D+++Y+  D+ E   F   +
Sbjct: 1565 EARMQAMTKPTYTAVVQHAKNGKPAIVFVPTRKHVRLTAVDLMSYSKVDN-EEPAFRLRS 1623

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L PF+ ++ E TL   L HGVGYLHEGL+S +QE+V+ LF AG IQVCV        
Sbjct: 1624 AEELKPFVDKISEETLRTTLEHGVGYLHEGLNSLDQEVVSQLFEAGWIQVCVMSSSLCWG 1683

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1684 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1743

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD+ NAE+V   IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1744 YKKFLYEAFPVESHLHHFLHDNFNAEIVALVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1803

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTLTDLEASKC+ +E++M LSPLNLGMIA              
Sbjct: 1804 QGVSHRHLSDHLSELVENTLTDLEASKCITIEDDMDLSPLNLGMIASYYYISYTTIERFS 1863

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASEYA+LPIRPGEE+ ++++I HQRF+ ENP+ TDPHVKAN 
Sbjct: 1864 SSLTSKTKMKGLLEILASASEYAQLPIRPGEEDVLRRLINHQRFSFENPRCTDPHVKANA 1923

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHF+R  V GNLALDQREVLL A+RLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1924 LLQAHFTRQHVGGNLALDQREVLLYATRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1983

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGK+IET+FDLVEMEDDERRELLQM+D  LLDIA+F
Sbjct: 1984 WERDSMLLQLPHFTKDLAKRCQENPGKNIETIFDLVEMEDDERRELLQMSDLQLLDIAKF 2043

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+Y+VLE ++VR GE+VT+QV LERDLEGR E+ PVDAPRYPK K+EGWWLV
Sbjct: 2044 CNRFPNIDLSYDVLEGENVRAGENVTLQVTLERDLEGRTEVGPVDAPRYPKAKEEGWWLV 2103

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +G+  SNQLLAIKRV+LQRKAKVKLEF AP +  +K YTL+FMCDSYLGCDQEY FT++ 
Sbjct: 2104 VGETRSNQLLAIKRVSLQRKAKVKLEFAAPTEAAKKAYTLYFMCDSYLGCDQEYNFTVDA 2163

Query: 1908 QEAMEED 1888
            +EA   D
Sbjct: 2164 KEAAGPD 2170



 Score =  410 bits (1055), Expect(2) = 0.0
 Identities = 197/237 (83%), Positives = 218/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE +LHHEYFLLKKQY DEDH L+FTV I+EPLPPQYFIRVVSD+WLGSQTILPV
Sbjct: 1253 VEDNDGEYVLHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPV 1312

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYEALY  FKHFNP+QTQVFTVLYN+DDN
Sbjct: 1313 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDN 1372

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VYIAPLEA+AKER RDW+ KFGR LG+
Sbjct: 1373 VLVAAPTGSGKTICAEFAILRNHQKGPDSIMRVVYIAPLEAIAKERYRDWEKKFGRGLGM 1432

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE++ DLKLLEK  I+ISTPEKWDALSRRWKQRK VQQV++FIVDELHL+G
Sbjct: 1433 RVVELTGETSMDLKLLEKGQIVISTPEKWDALSRRWKQRKYVQQVSVFIVDELHLIG 1489



 Score =  214 bits (546), Expect(2) = 4e-72
 Identities = 160/582 (27%), Positives = 277/582 (47%), Gaps = 11/582 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGAST-HGLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPVPL     GI +     R Q M 
Sbjct: 674  IRLVGLSATLPNYEDVALFLRVDLKEGLFHFDNSYRPVPLSQQYIGITVKKPLQRFQLMN 733

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  ++  A G    L+FV +RK    TA  +   A A+    S+FL+    ++E L 
Sbjct: 734  DICYEKVMAVA-GKHQVLIFVHSRKETTKTARAVRDTALAND-TLSRFLKEDAASREILQ 791

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H GL+  ++++V  LF  G +QV V+           A
Sbjct: 792  SHTDMVKSNDLKDLLPYGFAIHHAGLARTDRQIVEELFADGHVQVLVSTATLAWGVNLPA 851

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y   + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   +
Sbjct: 852  HTVIIKGTQIYSPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLM 911

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQG-VS 2977
             +  P+ES     L D +NAE+V+GT+++ ++A +++T+T+LY R+ +NP  Y L   V 
Sbjct: 912  NQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWITYTYLYVRMLRNPTLYGLPADVL 971

Query: 2976 HRHLS--DHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
             R L+  +  ++L+ +  T L+ +  V  + +  Y    +LG IA               
Sbjct: 972  SRDLTLDERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNE 1031

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K++      I+     +P  K NVL
Sbjct: 1032 HLKPTMGDIELYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVL 1090

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RLL+A+ +++   GW   A   + L +MVT+ +
Sbjct: 1091 LQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRM 1150

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q      ++  K  E    + +  +DL   E  E     +M       + RF
Sbjct: 1151 WNVQTPLRQFHGIPNEILMKL-EKKDLAWDRYYDLSSQEIGELIRFQKMGRT----LHRF 1205

Query: 2268 CNRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
             ++FP ++L  + + + R  +R   ++T     E  + G +E
Sbjct: 1206 IHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVE 1247



 Score = 87.8 bits (216), Expect(2) = 4e-72
 Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 9/173 (5%)
 Frame = -1

Query: 4378 APPTELLDLQPLPVTALRNPSY-EALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPTGSG 4202
            AP ++ L+     V     P + +  +   +  N +Q++V+     + DN+L+ APTG+G
Sbjct: 477  APKSKPLESDERLVKISEMPEWAQPAFKGMQQLNRVQSKVYETALFAADNILLCAPTGAG 536

Query: 4201 KTICAEFALLR---LHQQSP-----ENMRCVYIAPLEALAKERLRDWDDKFGRALGLKVV 4046
            KT  A   +L+   L+  S       N + VY+AP++AL  E + +   +   A G+ V 
Sbjct: 537  KTNVAVLTILQQLALNMDSDGSINHSNYKIVYVAPMKALVAEVVGNLSHRL-EAYGVTVR 595

Query: 4045 DLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
            +L G+     + +++  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 596  ELSGDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 648


>ref|XP_006350847.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Solanum tuberosum]
          Length = 2174

 Score =  998 bits (2580), Expect(2) = 0.0
 Identities = 488/667 (73%), Positives = 563/667 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + SSQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1506 YISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1565

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHA+  KPALV+VPTRKHARLTA+D++TY++ DS +   FL  +
Sbjct: 1566 EARMQAMTKPTYTAIVQHARKGKPALVYVPTRKHARLTAVDLMTYSSMDSEDTPIFLLRS 1625

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+ R+ E  L   L +GVGYLHEGLS+ +Q++V  LF  G IQVCV        
Sbjct: 1626 AEELEPFVERINEPMLQETLKYGVGYLHEGLSATDQDIVKTLFETGWIQVCVMNGTMCWG 1685

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+D+SGKCVILCHAPRK+Y
Sbjct: 1686 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDSSGKCVILCHAPRKDY 1745

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL H+LHD++NAEVVVG I++KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1746 YKKFLYEAFPVESHLQHYLHDNLNAEVVVGVIQNKQDAVDYLTWTFMYRRLTQNPNYYNL 1805

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSD LSELVENT++DLEASKCV +E+E  LSPLNLGMIA              
Sbjct: 1806 QGVSHRHLSDQLSELVENTISDLEASKCVTIEDEFLLSPLNLGMIASYYYISYTTIERFS 1865

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASE+ +LPIRPGEEE ++++I H RF+ ENPK TDPHVKAN 
Sbjct: 1866 SSVTSKTKLKGLLEILASASEFEQLPIRPGEEELIRRLINHLRFSFENPKYTDPHVKANA 1925

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR +V GNLA DQ+EVLLSA+RLLQAMVDVISSNGWL+ AL TME+SQMVTQG+
Sbjct: 1926 LLQAHFSRQMVGGNLASDQQEVLLSATRLLQAMVDVISSNGWLSLALLTMEVSQMVTQGM 1985

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTK+LAKKCQENPG+SIETVFDLVEMEDDERRELLQM+D  LLDIARF
Sbjct: 1986 WERDSMLLQLPHFTKELAKKCQENPGRSIETVFDLVEMEDDERRELLQMSDLQLLDIARF 2045

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL Y+VL+ D+V  G+ V+VQV LERDLEGR E+ PV APRYPK K+EGWWLV
Sbjct: 2046 CNRFPNIDLTYDVLDSDNVSAGDDVSVQVTLERDLEGRTEVGPVFAPRYPKTKEEGWWLV 2105

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRV LQRK+KVKL+F AP + G + YTL+FMCDSYLGCDQEY FT++V
Sbjct: 2106 VGDTKSNQLLAIKRVTLQRKSKVKLDFAAPAEAGTRNYTLYFMCDSYLGCDQEYNFTLDV 2165

Query: 1908 QEAMEED 1888
            +EAM ED
Sbjct: 2166 KEAMAED 2172



 Score =  404 bits (1038), Expect(2) = 0.0
 Identities = 195/237 (82%), Positives = 216/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+LKKQY DEDH L+FTV I+EPLPPQYFIRVVSD+WLGSQT+LPV
Sbjct: 1254 VEDNDGEFILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPV 1313

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNP+YEALY  FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1314 SFRHLILPEKYPPPTELLDLQPLPVTALRNPAYEALYQDFKHFNPVQTQVFTVLYNSDDN 1373

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ +R VYIAPLEALAKER  DW  KFG  LG+
Sbjct: 1374 VLVAAPTGSGKTICAEFAILRNHQKGPDSTIRAVYIAPLEALAKERFNDWKTKFGDHLGM 1433

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A+DLKLLEK  +IISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1434 RVVELTGETASDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1490



 Score =  206 bits (524), Expect(2) = 6e-70
 Identities = 156/581 (26%), Positives = 270/581 (46%), Gaps = 10/581 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPVPL     GI +     R Q M 
Sbjct: 675  IRLVGLSATLPNYEDVAVFLRVDLKKGLFHFDNSYRPVPLAQQYIGITVKKPLQRFQLMN 734

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G+  +    T+E L  
Sbjct: 735  DVCYEKVISIA-GKHQVLIFVHSRKETSKTARAIRDTALANDTLGKFLKEDSLTRELLQS 793

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G+   +++LV  LF  G +QV V+           AH
Sbjct: 794  QTELVKSNDLKDLLPYGFAIHHAGMVRTDRQLVEDLFADGHVQVLVSTATLAWGVNLPAH 853

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D  G+ +IL      +YY   + 
Sbjct: 854  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIILTGHSELQYYLSLMN 913

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSHR 2971
            +  P+ES     L D +NAE+V+GT+ + ++A  +L +T+LY R+ +NP  Y L   + +
Sbjct: 914  QQLPIESQFISKLADQLNAEIVLGTVLNAKEACKWLLYTYLYVRMVRNPTLYGLPADALK 973

Query: 2970 ---HLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXXX 2803
                L +  ++LV +    L+ +  V  + +  Y    +LG IA                
Sbjct: 974  TDYALEERRADLVHSAAILLDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEH 1033

Query: 2802 XXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVLL 2623
                     L  + + + E+  + +R  E+  + K++      I+     +P  K NVLL
Sbjct: 1034 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVLL 1092

Query: 2622 QAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLW 2446
            QA+ SR  + G +L+ D   +  SA+RL++A+ +++   GW   A   ++  +M+++ +W
Sbjct: 1093 QAYISRLKLEGLSLSSDMVYITQSAARLMRALFEIVLKRGWAQLAEKALKWCKMISKRMW 1152

Query: 2445 ERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFC 2266
               + L Q      ++  K  E    + E  +DL   E  E     +M       + +F 
Sbjct: 1153 SVQTPLRQFHGIPNEILMKL-EKKDLAWERYYDLSSQELGELIRFPKMGRT----LHKFI 1207

Query: 2265 NRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            ++FP ++L  + + + R  +R   ++T     E  + G +E
Sbjct: 1208 HQFPKLNLAAHVQPITRSVLRVELTITPDFQWEDKVHGYVE 1248



 Score = 89.0 bits (219), Expect(2) = 6e-70
 Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
 Frame = -1

Query: 4390 PEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPT 4211
            P    P  EL+ +  +P  A   P++  +       N +Q++V+     S +N+L+ APT
Sbjct: 480  PRPLDPGEELVKISSIPEWA--RPAFSGM----TQLNRVQSKVYETALFSPENILLCAPT 533

Query: 4210 GSGKTICAEFALLR---LHQQSPE------NMRCVYIAPLEALAKERLRDWDDKFGRALG 4058
            G+GKT  A   +L+   L++   +      N + VY+AP++AL  E + +   +     G
Sbjct: 534  GAGKTNVAMLTILQQIALNRNEDDGTFNHNNYKIVYVAPMKALVAEVVGNLSKRLEH-YG 592

Query: 4057 LKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
            + V +L G+     + +E+  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 593  VTVKELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 649


>ref|XP_006598183.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            isoform X1 [Glycine max]
          Length = 2183

 Score =  998 bits (2579), Expect(2) = 0.0
 Identities = 488/660 (73%), Positives = 559/660 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIR+VALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQGIDIANF
Sbjct: 1513 YIASQVENKIRVVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGIDIANF 1572

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPALVFVPTRKH RLTA+D++TY+ ADSGE+  FL  +
Sbjct: 1573 EARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLITYSGADSGEKP-FLLRS 1631

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PFL ++ +  L   L  GVGYLHEGL+S ++++VT LF AG IQVCV        
Sbjct: 1632 AEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDRDIVTQLFEAGWIQVCVLNSSMCWG 1691

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENA TDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1692 VTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEY 1751

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1752 YKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1811

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE+VENTL+DLEA KC+ +E++M L+PLNLGMIA              
Sbjct: 1812 QGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGMIASYYYISYTTIERFS 1871

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL+SASEYA+LPIRPGEEE V+K+I HQRF+ ENPK TDPHVK N 
Sbjct: 1872 SSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRFSFENPKVTDPHVKTNA 1931

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLALDQ+EVLLSA+RLLQAMVDVISSNGWL  AL  ME+SQMVTQG+
Sbjct: 1932 LLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLGLALLAMEVSQMVTQGM 1991

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAKKCQENPGKSIETVFDL+EMED+ER+ELL M+D+ LLDIARF
Sbjct: 1992 WERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDNERQELLGMSDSQLLDIARF 2051

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+YEVL+ D+VR GE VTV V LERDLEGR E+ PVDAPRYPK K+EGWWL+
Sbjct: 2052 CNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDLEGRTEVGPVDAPRYPKAKEEGWWLI 2111

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +N LLAIKRV+LQR+ K KLEF+AP D G K+Y+L+FMCDSYLGCDQEY FTI+V
Sbjct: 2112 VGDTKTNLLLAIKRVSLQRRLKAKLEFDAPADAGRKSYSLYFMCDSYLGCDQEYGFTIDV 2171



 Score =  405 bits (1040), Expect(2) = 0.0
 Identities = 196/237 (82%), Positives = 216/237 (91%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+LKKQY DEDH L+FTV I+EPLPPQYFIRVVSDRWLGSQT+LPV
Sbjct: 1261 VEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPV 1320

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNPSYE+LY  FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1321 SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYESLYKDFKHFNPVQTQVFTVLYNSDDN 1380

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VY+AP+E+LAKER RDW+ KFG  L L
Sbjct: 1381 VLVAAPTGSGKTICAEFAILRNHQKWPDSVMRVVYVAPIESLAKERYRDWEKKFGGGLKL 1440

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLEK  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1441 RVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1497



 Score =  209 bits (533), Expect(2) = 2e-70
 Identities = 159/581 (27%), Positives = 272/581 (46%), Gaps = 10/581 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF F    RPVPL     GI +     R Q M 
Sbjct: 682  IRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMN 741

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G   +    ++E L  
Sbjct: 742  DICYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDTALANDTLGRFLKEDSASREILHT 800

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G++  +++LV  LF  G +QV V+           AH
Sbjct: 801  HTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHVQVLVSTATLAWGVNLPAH 860

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   + 
Sbjct: 861  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYYLSLMN 920

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL-QGVSH 2974
            +  P+ES     L D +NAE+V+GT+++ ++A +++ +T+LY R+ +NP+ Y +   V  
Sbjct: 921  QQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRMLRNPSLYGIAPDVLT 980

Query: 2973 RH--LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXXX 2803
            R   L +  ++L+    T L+ +  V  + +  Y    +LG IA                
Sbjct: 981  RDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGSISTYNEH 1040

Query: 2802 XXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVLL 2623
                     L  + + + E+  + +R  E+  + K++      I+     +P  K NVLL
Sbjct: 1041 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVLL 1099

Query: 2622 QAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLW 2446
            QA+ S+  + G +L  D   +  SA RLL+A+ +++   GW   A   + L +MVT+ +W
Sbjct: 1100 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMVTKRMW 1159

Query: 2445 ERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFC 2266
               + L Q      DL  K  E    + E  +DL   E  E     +M       + +F 
Sbjct: 1160 SVQTPLRQFNGIPSDLLTKL-EKKDLAWERYYDLSSQEIGELIRAPKMGRT----LHKFI 1214

Query: 2265 NRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            ++FP ++L  + + + R  +R   ++T   A +  + G +E
Sbjct: 1215 HQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVE 1255



 Score = 87.4 bits (215), Expect(2) = 2e-70
 Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 20/203 (9%)
 Frame = -1

Query: 4435 GSQTILPVSFRHLILPEKYAPPTE----LLDLQPLPVTALRNPSYEALYHQFKHFNPIQT 4268
            GS   L   +  + +P   A P +    L+ +  +P  A   P+++ +       N +Q+
Sbjct: 468  GSYRHLSKGYEEIHVPALKAKPLDPNEKLVKISSMPDWA--QPAFKGM----TQLNRVQS 521

Query: 4267 QVFTVLYNSDDNVLVAAPTGSGKTICAEFALLR--LHQQSPEN-------MRCVYIAPLE 4115
            +V+       DN+L+ APTG+GKT  A   +L+     ++P++        + VY+AP++
Sbjct: 522  KVYETALFQPDNLLLCAPTGAGKTNVAVLTILQQIARHRNPKDGSIDHSAYKIVYVAPMK 581

Query: 4114 ALAKE-------RLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALS 3956
            AL  E       RL+D+D        +KV +L G+ +   + +E+  II++TPEKWD ++
Sbjct: 582  ALVAEVVGNLSNRLQDYD--------VKVRELSGDQSLTRQQIEETQIIVTTPEKWDIIT 633

Query: 3955 RRWKQRKVVQQVNLFIVDELHLM 3887
            R+   R   Q V L I+DE+HL+
Sbjct: 634  RKSGDRTYTQLVKLLIIDEIHLL 656


>ref|XP_006416344.1| hypothetical protein EUTSA_v10006525mg [Eutrema salsugineum]
            gi|557094115|gb|ESQ34697.1| hypothetical protein
            EUTSA_v10006525mg [Eutrema salsugineum]
          Length = 2160

 Score =  997 bits (2577), Expect(2) = 0.0
 Identities = 479/663 (72%), Positives = 562/663 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + SSQG+NKIRIVALS+SLANAKDLGEWIGAS+HGLFNF PGVRPVPLEIHIQG+DI++F
Sbjct: 1490 YISSQGDNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSF 1549

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK +KPA+VFVPTRKH RLTA+D++ Y++ D+ +   FL   
Sbjct: 1550 EARMQAMTKPTYTAIVQHAKNNKPAIVFVPTRKHVRLTAVDLMAYSHMDNSQSPDFLLGK 1609

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+S+++E TL   L HGVGYLHEGL S +QE+VT LF AG IQ CV        
Sbjct: 1610 LEELEPFVSQIREETLKETLRHGVGYLHEGLCSMDQEIVTQLFEAGRIQACVMSSSLCWG 1669

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               +AHLVVV+GTQYYDGREN+H+DYP++DLLQMMGRASRPL+DN+GKCVI CHAPRKEY
Sbjct: 1670 TPLTAHLVVVMGTQYYDGRENSHSDYPVSDLLQMMGRASRPLLDNAGKCVIFCHAPRKEY 1729

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD+ NAEVV G IE+KQDAVDYLTWTF+YRRL QNPNYYNL
Sbjct: 1730 YKKFLYEAFPVESHLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNL 1789

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTL+DLEASKC+ +E+EM LSPLNLGMIA              
Sbjct: 1790 QGVSHRHLSDHLSELVENTLSDLEASKCIEIEDEMDLSPLNLGMIASYYYISYTTIERFS 1849

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL SASEY  +PIRPGEE+ V+++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1850 SLLSSKTKMKGLVEILTSASEYDTIPIRPGEEDAVRRLINHQRFSFENPKCTDPHVKANA 1909

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  ++GNLA+DQREVLLSA+RLLQA+VDVISSNGWLN AL  ME+SQMVTQG+
Sbjct: 1910 LLQAHFSRQSISGNLAMDQREVLLSATRLLQAIVDVISSNGWLNLALLAMEVSQMVTQGM 1969

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGKSIETVFDLVEMED+ER+ELL+M D++LLDIARF
Sbjct: 1970 WERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDEERQELLKMKDSELLDIARF 2029

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL YEV+  ++V  G+ VT+QV LERD+EGR E+ PVDAPRYPK K+EGWWLV
Sbjct: 2030 CNRFPNIDLTYEVVGSEEVTPGKEVTLQVMLERDMEGRTEVGPVDAPRYPKTKEEGWWLV 2089

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +NQLLAIKRV+LQRK KVKL+F  P + GEK+YTL+FMCDSYLGCDQEY F+++V
Sbjct: 2090 VGDTETNQLLAIKRVSLQRKLKVKLDFAVPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDV 2149

Query: 1908 QEA 1900
            +E+
Sbjct: 2150 KES 2152



 Score =  362 bits (928), Expect(2) = 0.0
 Identities = 179/237 (75%), Positives = 201/237 (84%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE+IL           +  DH +SFTVSI EPLPPQYFIRV+SD+WLGSQT+LPV
Sbjct: 1249 VEDNDGEKIL-----------SSRDHTISFTVSIFEPLPPQYFIRVISDKWLGSQTVLPV 1297

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNP YE LY  FKHFNP+QTQVFTVLYN++DN
Sbjct: 1298 SFRHLILPEKYPPPTELLDLQPLPVTALRNPDYERLYQDFKHFNPVQTQVFTVLYNTNDN 1357

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQ-SPENMRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+L+ HQ+ S   MR VYIAPLEA+AKE+ R W+ KFG+ LGL
Sbjct: 1358 VLVAAPTGSGKTICAEFAILKNHQEGSDATMRVVYIAPLEAIAKEQFRIWERKFGKGLGL 1417

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+  DLKLLEK  IIISTPEKWDALSRRWKQRK +QQV+LFIVDELHL+G
Sbjct: 1418 RVVELTGETTLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIG 1474



 Score =  210 bits (534), Expect(2) = 1e-70
 Identities = 164/614 (26%), Positives = 280/614 (45%), Gaps = 9/614 (1%)
 Frame = -2

Query: 3870 ENKIRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQ 3694
            +  IR+V LS++L N +D+  ++      GLF F    RPVPL     GI +     R Q
Sbjct: 667  KENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQ 726

Query: 3693 AMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKE 3523
             M    +  ++  A G    L+FV +RK    TA  I   A A+    S+FL+    ++E
Sbjct: 727  LMNDICYQKVLAGA-GKHQVLIFVHSRKETAKTANAIKDTAMAND-TLSRFLKEDSVSRE 784

Query: 3522 DLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXX 3343
             L   +  +K S L  +L +G    H GL+  ++E+V  LF  G +QV V+         
Sbjct: 785  VLQSQIDIIKNSDLKKLLPYGFAIHHAGLTRGDREIVESLFAEGHVQVLVSTATLAWGVN 844

Query: 3342 XSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYK 3163
              AH V++ GTQ Y+  + A  +    D++QM+GRA RP  D SG+ +I+      +YY 
Sbjct: 845  LPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQSGEGIIITGYSELQYYL 904

Query: 3162 KFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQG 2983
              + E  P+ES     L D +NAE+V+GT+++ ++A  +L +T+LY R+ +NP  Y L  
Sbjct: 905  SLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAP 964

Query: 2982 ---VSHRHLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXX 2815
                    L +  ++L+ +  T L+ +  V  + +  Y    +LG IA            
Sbjct: 965  DALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIAT 1024

Query: 2814 XXXXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKA 2635
                         L  + + + E+  + +R  E+  + K++      I+     +P  K 
Sbjct: 1025 FNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKETL-EEPSAKI 1083

Query: 2634 NVLLQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVT 2458
            NVLLQA+ S+  + G +L  D   +  SA RL++A+ +++   GW   A   + LS+MV 
Sbjct: 1084 NVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSKMVG 1143

Query: 2457 QGLWERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDI 2278
            + +W   + L Q      D+  K  E      E  +DL   E  E     +M       +
Sbjct: 1144 KRMWSVQTPLRQFHGIPNDILMKL-EKKDLVWERYYDLSSQELGELIRSPKMG----RPL 1198

Query: 2277 ARFCNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGW 2098
             +F ++FP ++L   V       T   + V++ +  D +   +I     P         +
Sbjct: 1199 HKFIHQFPKVNLAAHV----QPITRTVLKVELTITPDFQWDEKIHKYVEP---------F 1245

Query: 2097 WLVIGDPSSNQLLA 2056
            W+++ D    ++L+
Sbjct: 1246 WIIVEDNDGEKILS 1259



 Score = 87.4 bits (215), Expect(2) = 1e-70
 Identities = 51/168 (30%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
 Frame = -1

Query: 4366 ELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPTGSGKTICA 4187
            +L+ +  +PV A   P+++ +    +  N +Q++V+       +N+L+ APTG+GKT  A
Sbjct: 484  KLVKITEMPVWA--QPAFKGM----QQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVA 537

Query: 4186 EFALLRLHQ--QSPE------NMRCVYIAPLEALAKERLRDWDDKFGRALGLKVVDLQGE 4031
               +L+  +  ++P+      + + VY+AP++AL  E + +  ++  +  G+ V +L G+
Sbjct: 538  MLTILQQLEMNRNPDGTYNHGDYKIVYVAPMKALVAEVVSNLSNRL-KDYGVTVRELSGD 596

Query: 4030 SAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
             +   K +E+  II++TPEKWD ++R+   R   Q V L I+DE+HL+
Sbjct: 597  QSLSGKEIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLL 644


>ref|XP_004242515.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Solanum lycopersicum]
          Length = 2174

 Score =  994 bits (2570), Expect(2) = 0.0
 Identities = 487/667 (73%), Positives = 562/667 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + SSQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DIANF
Sbjct: 1506 YISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANF 1565

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHA+  KPALV+VPTRKHARLTA+D++TY++ DS +   FL  +
Sbjct: 1566 EARMQAMTKPTYTAIVQHARKGKPALVYVPTRKHARLTAVDLMTYSSMDSEDTPIFLLRS 1625

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PF+ R+ E  L   L +GVGYLHEGLS+ +Q++V  LF  G IQVCV        
Sbjct: 1626 AEELEPFVERINEPMLQETLKYGVGYLHEGLSATDQDIVKTLFETGWIQVCVMNGTMCWG 1685

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               SAHLVVV+GTQYYDGRENAHTDYP+TDLLQMMG ASRPL+D+SGKCVILCHAPRK+Y
Sbjct: 1686 VPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDSSGKCVILCHAPRKDY 1745

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL H+LHD++NAEVVVG I++KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1746 YKKFLYEAFPVESHLQHYLHDNLNAEVVVGVIQNKQDAVDYLTWTFMYRRLTQNPNYYNL 1805

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSD LSELVENT++DLEASKCV VE+E  LSPLNLGMIA              
Sbjct: 1806 QGVSHRHLSDQLSELVENTISDLEASKCVTVEDEFLLSPLNLGMIASYYYISYTTIERFS 1865

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EILASASE+ +LPIRPGEEE ++++I H RF+ ENPK TDPHVKAN 
Sbjct: 1866 SSVTSKTKLKGLLEILASASEFEQLPIRPGEEELIRRLINHLRFSFENPKYTDPHVKANA 1925

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR +V GNLA DQ+EVLLSA+RLLQAMVDVISSNGWL+ AL TME+SQMVTQG+
Sbjct: 1926 LLQAHFSRQMVGGNLASDQQEVLLSATRLLQAMVDVISSNGWLSLALLTMEVSQMVTQGM 1985

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTK+LAKKCQENPG+SIETVFDLVEMED+ERRELLQM+D  LLDIARF
Sbjct: 1986 WERDSMLLQLPHFTKELAKKCQENPGRSIETVFDLVEMEDNERRELLQMSDLQLLDIARF 2045

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL Y V++ D+V  G+ V+VQV LERDLEGR E+ PV APRYPK K+EGWWLV
Sbjct: 2046 CNRFPNIDLTYHVVDSDNVSAGDDVSVQVTLERDLEGRTEVGPVFAPRYPKTKEEGWWLV 2105

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  SNQLLAIKRV LQRK+KVKL+F AP + G + YTL+FMCDSYLGCDQEY FT++V
Sbjct: 2106 VGDTKSNQLLAIKRVTLQRKSKVKLDFAAPAEAGMRNYTLYFMCDSYLGCDQEYNFTLDV 2165

Query: 1908 QEAMEED 1888
            +EAM ED
Sbjct: 2166 KEAMAED 2172



 Score =  402 bits (1033), Expect(2) = 0.0
 Identities = 194/237 (81%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+LKKQY DEDH L+FTV I+EPLPPQYFIRVVSD+WLGS T+LPV
Sbjct: 1254 VEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSLTVLPV 1313

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNP+YEALY  FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1314 SFRHLILPEKYPPPTELLDLQPLPVTALRNPAYEALYQDFKHFNPVQTQVFTVLYNSDDN 1373

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ +R VYIAPLEALAKER  DW  KFG  LG+
Sbjct: 1374 VLVAAPTGSGKTICAEFAILRNHQKGPDSTIRAVYIAPLEALAKERFNDWKTKFGDHLGM 1433

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A+DLKLLEK  +IISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1434 RVVELTGETASDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1490



 Score =  207 bits (526), Expect(2) = 3e-70
 Identities = 159/611 (26%), Positives = 278/611 (45%), Gaps = 10/611 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF+F    RPVPL     GI +     R Q M 
Sbjct: 675  IRLVGLSATLPNYEDVAVFLRVDLKKGLFHFDNSYRPVPLAQQYIGITVKKPLQRFQLMN 734

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G+  +    T+E L  
Sbjct: 735  DVCYEKVISIA-GKHQVLIFVHSRKETSKTARAIRDTALANDTLGKFLKEDSLTRELLQS 793

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G+   +++LV  LF  G +QV V+           AH
Sbjct: 794  QTELVKSNDLKDLLPYGFAIHHAGMVRTDRQLVEDLFADGHVQVLVSTATLAWGVNLPAH 853

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D  G+ +IL      +YY   + 
Sbjct: 854  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIILTGHSELQYYLSLMN 913

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSHR 2971
            +  P+ES     L D +NAE+V+GT+ + ++A  +L +T+LY R+ +NP  Y L   + +
Sbjct: 914  QQLPIESQFISKLADQLNAEIVLGTVLNAKEACKWLLYTYLYVRMVRNPTLYGLPADALK 973

Query: 2970 ---HLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXXX 2803
                L +  ++LV +    L+ +  V  + +  Y    +LG IA                
Sbjct: 974  TDYALEERRADLVHSAAVLLDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEH 1033

Query: 2802 XXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVLL 2623
                     L  + + + E+  + +R  E+  + K++      I+     +P  K NVLL
Sbjct: 1034 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVLL 1092

Query: 2622 QAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLW 2446
            QA+ SR  + G +L+ D   +  SA+RL++A+ +++   GW   A   ++  +M+++ +W
Sbjct: 1093 QAYISRLKLEGLSLSSDMVYITQSAARLMRALFEIVLKRGWAQLAEKALKWCKMISKRMW 1152

Query: 2445 ERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFC 2266
               + L Q      ++  K  E    + E  +DL   E  E     +M       + +F 
Sbjct: 1153 SVQTPLRQFHGIPNEILMKL-EKKDLAWERYYDLSSQELGELIRFPKMGRT----LHKFI 1207

Query: 2265 NRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWL 2092
            ++FP ++L  + + + R  +R   ++T     E  + G +               E +W+
Sbjct: 1208 HQFPKLNLAAHVQPITRSVLRVELTITPDFQWEDKVHGYV---------------ESFWI 1252

Query: 2091 VIGDPSSNQLL 2059
            ++ D     +L
Sbjct: 1253 IVEDNDGEYIL 1263



 Score = 89.4 bits (220), Expect(2) = 3e-70
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 9/177 (5%)
 Frame = -1

Query: 4390 PEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDNVLVAAPT 4211
            P    P  EL+ +  +P  A   P++  +       N +Q++V+     S +N+L+ APT
Sbjct: 480  PRPLDPGEELVKISSIPEWA--QPAFSGM----TQLNRVQSKVYETALFSPENILLCAPT 533

Query: 4210 GSGKTICAEFALLR---LHQQSPE------NMRCVYIAPLEALAKERLRDWDDKFGRALG 4058
            G+GKT  A   +L+   L++   +      N + VY+AP++AL  E + +   +     G
Sbjct: 534  GAGKTNVAMLTILQQIALNRNEDDGTFNHNNYKIVYVAPMKALVAEVVGNLSKRLEH-YG 592

Query: 4057 LKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLM 3887
            + V +L G+     + +E+  II++TPEKWD ++R+   R   Q V L IVDE+HL+
Sbjct: 593  VTVKELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLL 649


>ref|XP_006480405.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            isoform X1 [Citrus sinensis]
            gi|568853532|ref|XP_006480406.1| PREDICTED: U5 small
            nuclear ribonucleoprotein 200 kDa helicase-like isoform
            X2 [Citrus sinensis]
          Length = 2179

 Score =  993 bits (2566), Expect(2) = 0.0
 Identities = 481/666 (72%), Positives = 561/666 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENKIRIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQG+DI NF
Sbjct: 1514 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1573

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP FT+IVQHAK  KPALVFVP+RK+ RLTA+D++TY++ D  ++S FL   
Sbjct: 1574 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1633

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+++PF+  ++E  L   L HGVGYLHEGL+  +QE+V+ LF AG I+VCV        
Sbjct: 1634 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1693

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               +AHLVVV+GTQYYDG+ENAHTDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1694 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1753

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLY+ FPVESHL HFLHD+ NAE+V G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1754 YKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1813

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENT++DLEASKC+ +EE+M LSP N GMIA              
Sbjct: 1814 QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFS 1873

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+E+LASASEYA+LPIRPGEEE V+++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1874 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANA 1933

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNL LDQ EVLLSASRLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1934 LLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGI 1993

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGKSIETVFDLVEMEDDERRELLQM+D  LLDIARF
Sbjct: 1994 WERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARF 2053

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNID+++EV + ++VR GE +T+QV LERDLEGR E+ PV + RYPK K+EGWWLV
Sbjct: 2054 CNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLV 2113

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +NQLLAIKRV+LQRK++VKL+F AP + G+KTYTL+FMCDSY+GCDQEY FT++V
Sbjct: 2114 VGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDV 2173

Query: 1908 QEAMEE 1891
            +EA EE
Sbjct: 2174 KEAGEE 2179



 Score =  404 bits (1037), Expect(2) = 0.0
 Identities = 196/238 (82%), Positives = 216/238 (90%), Gaps = 2/238 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+LKKQY +EDH L+FTV I+EPLPPQYFIRVVSD+WLGSQT+LPV
Sbjct: 1261 VEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPV 1320

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNP YEALY  FKHFNPIQTQVFTVLYN+DDN
Sbjct: 1321 SFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDN 1380

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN--MRCVYIAPLEALAKERLRDWDDKFGRALG 4058
            VLVAAPTGSGKTIC+EFA+LR HQ++ E   MR VYIAPLEALAKER RDW+ KFG+ LG
Sbjct: 1381 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1440

Query: 4057 LKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            ++VV+L GE+A DLKLLEK  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1441 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1498



 Score =  204 bits (518), Expect(2) = 2e-69
 Identities = 152/549 (27%), Positives = 258/549 (46%), Gaps = 9/549 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++  +   GLF F    RPVPL     GI +     R Q M 
Sbjct: 682  IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 741

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKEDLD 3514
               +  +V  A G    L+FV +RK    TA  I   A  ++    +FL+    ++E L 
Sbjct: 742  DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTA-LENDTLGRFLKEDSVSREILQ 799

Query: 3513 PFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSA 3334
                 VK + L  +L +G    H G++  +++LV  LF  G +QV V+           A
Sbjct: 800  SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 859

Query: 3333 HLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFL 3154
            H V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+       YY   +
Sbjct: 860  HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 919

Query: 3153 YEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQGVSH 2974
             +  P+ES     L D +NAE+V+GT+++ ++A +++ +T+LY R+ +NP  Y L     
Sbjct: 920  NQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVL 979

Query: 2973 RH---LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXX 2806
            +    L +  ++LV    T L+ +  V  + +  Y    +LG IA               
Sbjct: 980  KEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE 1039

Query: 2805 XXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVL 2626
                      L  + + + E+  + +R  E+  + K++      ++     +P  K NVL
Sbjct: 1040 HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVL 1098

Query: 2625 LQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LQA+ S+  + G +L  D   +  SA RLL+A+ +++   GW   A   + LS+MVT+ +
Sbjct: 1099 LQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1158

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            W   + L Q      ++  K  E    + E  +DL   E  E     +M       + +F
Sbjct: 1159 WSVQTPLRQFNGIPNEILMKL-EKKDFAWERYYDLSPQELGELIRFPKMGRT----LHKF 1213

Query: 2268 CNRFPNIDL 2242
             ++FP + L
Sbjct: 1214 VHQFPKLIL 1222



 Score = 89.7 bits (221), Expect(2) = 2e-69
 Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 12/195 (6%)
 Frame = -1

Query: 4435 GSQTILPVSFRHLILPE-KYAP--PTE-LLDLQPLPVTALRNPSYEALYHQFKHFNPIQT 4268
            GSQ      +  + +P  K+ P  P E L+ +  +P  A   P+++ +       N +Q+
Sbjct: 469  GSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWA--QPAFKGM----TQLNRVQS 522

Query: 4267 QVFTVLYNSDDNVLVAAPTGSGKTICAEFALLR---LHQQSP-----ENMRCVYIAPLEA 4112
            +V+    +S DN+L+ APTG+GKT  A   +L+   L++         N + VY+AP++A
Sbjct: 523  RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 582

Query: 4111 LAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKV 3932
            L  E + +  ++  +   +KV +L G+     + +E+  II++TPEKWD ++R+   R  
Sbjct: 583  LVAEVVGNLSNRL-QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTY 641

Query: 3931 VQQVNLFIVDELHLM 3887
             Q V L I+DE+HL+
Sbjct: 642  TQLVKLLIIDEIHLL 656


>ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
            [Glycine max]
          Length = 2183

 Score =  992 bits (2565), Expect(2) = 0.0
 Identities = 484/660 (73%), Positives = 555/660 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + +SQ ENK RIVALS+SLANAKDLGEWIGA++HGLFNF PGVRPVPLEIHIQGIDI NF
Sbjct: 1513 YIASQVENKSRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGIDITNF 1572

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPAL+FVPTRKH RLTA+D++TY+ ADSGE+  FL  +
Sbjct: 1573 EARMQAMTKPTYTAIVQHAKNGKPALIFVPTRKHVRLTAVDMITYSGADSGEKP-FLLRS 1631

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+L+PFL ++ +  L   L  GVGYLHEGL+S + ++VT LF AG IQVCV        
Sbjct: 1632 AEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFEAGWIQVCVLNSSMCWG 1691

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
                AHLVVV+GTQYYDGRENA TDYP+TDLLQMMG ASRPL+DNSGKCVILCHAPRKEY
Sbjct: 1692 VTLLAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEY 1751

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVESHL HFLHD++NAE+V G IE+KQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1752 YKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1811

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSE+VENTL+DLEA KC+ +E++M L+PLNLGMIA              
Sbjct: 1812 QGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGMIASYYYISYTTIERFS 1871

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL+SASEYA+LPIRPGEEE V+K+I HQRF+ ENPK TDPHVKAN 
Sbjct: 1872 SSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRFSFENPKVTDPHVKANA 1931

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  V GNLALDQ+EVLLSA+RLLQAMVDVISSNGWL+ AL  ME+SQMVTQG+
Sbjct: 1932 LLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGM 1991

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAKKCQENPGKSIETVFDL+EMED+ER++LL M+D  LLDIARF
Sbjct: 1992 WERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDEERQKLLGMSDLQLLDIARF 2051

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL+YEVL+ D+VR GE VTV V LERD EGR E+ PVDAPRYPK K+EGWWL+
Sbjct: 2052 CNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDFEGRTEVGPVDAPRYPKAKEEGWWLI 2111

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +N LLAIKRV+LQRK K KLEF+AP D G K+Y+L+FMCDSYLGCDQEY FT++V
Sbjct: 2112 VGDTKTNLLLAIKRVSLQRKLKAKLEFDAPADAGRKSYSLYFMCDSYLGCDQEYGFTVDV 2171



 Score =  403 bits (1036), Expect(2) = 0.0
 Identities = 196/237 (82%), Positives = 215/237 (90%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE ILHHEYF+LKKQY DEDH L+FTV I+EPLPPQYFIRVVSDRWLGSQT+LPV
Sbjct: 1261 VEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPV 1320

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRN SYE+LY  FKHFNP+QTQVFTVLYNSDDN
Sbjct: 1321 SFRHLILPEKYPPPTELLDLQPLPVTALRNSSYESLYKDFKHFNPVQTQVFTVLYNSDDN 1380

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPEN-MRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR HQ+ P++ MR VY+AP+EALAKER RDW+ KFG  L L
Sbjct: 1381 VLVAAPTGSGKTICAEFAILRNHQKGPDSVMRVVYVAPVEALAKERYRDWERKFGGGLKL 1440

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLEK  IIISTPEKWDALSRRWKQRK VQQV+LFI+DELHL+G
Sbjct: 1441 RVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIG 1497



 Score =  207 bits (526), Expect(2) = 8e-70
 Identities = 158/581 (27%), Positives = 271/581 (46%), Gaps = 10/581 (1%)
 Frame = -2

Query: 3861 IRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQAMT 3685
            IR+V LS++L N +D+  ++      GLF F    RPVPL     GI +     R Q M 
Sbjct: 682  IRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMN 741

Query: 3684 KPAFTSIVQHAKGSKPALVFVPTRKHARLTALDI--VTYANADSGERSQFLQCTKEDLDP 3511
               +  ++  A G    L+FV +RK    TA  I     AN   G   +    ++E L  
Sbjct: 742  DICYEKVMAVA-GKHQVLIFVHSRKETAKTARAIRDAALANDTLGRFLKEDSASREILHT 800

Query: 3510 FLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXXXSAH 3331
                VK + L  +L +G    H G++  +++LV  LF  G +QV V+           AH
Sbjct: 801  HTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHVQVLVSTATLAWGVNLPAH 860

Query: 3330 LVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYKKFLY 3151
             V++ GTQ Y+  + A T+    D++QM+GRA RP  D+ G+ +I+      +YY   + 
Sbjct: 861  TVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYYLSLMN 920

Query: 3150 EPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL-QGVSH 2974
            +  P+ES     L D +NAE+V+GT+++ ++A +++ +T+LY R+ +NP+ Y +   V  
Sbjct: 921  QQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRMLRNPSLYGIAPDVLT 980

Query: 2973 RH--LSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXXXXXX 2803
            R   L +  ++L+    T L+ +  V  + +  Y    +LG IA                
Sbjct: 981  RDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGSISTYNEH 1040

Query: 2802 XXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANVLL 2623
                     L  + + + E+  + +R  E+  + K++      I+     +P  K NVLL
Sbjct: 1041 LKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE-SLEEPSAKINVLL 1099

Query: 2622 QAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGLW 2446
            QA+ S+  + G +L  D   +  SA RLL+A+ +++   GW   A   + L +M T+ +W
Sbjct: 1100 QAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMGTKRMW 1159

Query: 2445 ERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARFC 2266
               + L Q      DL  K  E    + E  +DL   E  E     +M       + +F 
Sbjct: 1160 SVQTPLRQFNGIPSDLLTKL-EKKDLAWERYYDLSSQEIGELIRAPKMGRT----LHKFI 1214

Query: 2265 NRFPNIDL--NYEVLERDDVRTGESVTVQVALERDLEGRLE 2149
            ++FP ++L  + + + R  +R   ++T   A +  + G +E
Sbjct: 1215 HQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVE 1255



 Score = 87.8 bits (216), Expect(2) = 8e-70
 Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 13/196 (6%)
 Frame = -1

Query: 4435 GSQTILPVSFRHLILPEKYAPPTE----LLDLQPLPVTALRNPSYEALYHQFKHFNPIQT 4268
            GS   L   +  + +P   A P +    L+ +  +P  A   P+++ +       N +Q+
Sbjct: 468  GSYRHLSKGYEEIHVPALKAKPLDPNEKLVKISSMPDWA--QPAFKGM----TQLNRVQS 521

Query: 4267 QVFTVLYNSDDNVLVAAPTGSGKTICAEFALLR--LHQQSPEN-------MRCVYIAPLE 4115
            +V+       DN+L+ APTG+GKT  A   +L+     ++PE+        + VY+AP++
Sbjct: 522  KVYETALFKPDNLLLCAPTGAGKTNVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMK 581

Query: 4114 ALAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRK 3935
            AL  E + +  ++  +   +KV +L G+ +   + +E+  II++TPEKWD ++R+   R 
Sbjct: 582  ALVAEVVGNLSNRL-QEYDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRT 640

Query: 3934 VVQQVNLFIVDELHLM 3887
              Q V L I+DE+HL+
Sbjct: 641  YTQLVKLLIIDEIHLL 656


>ref|NP_173520.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana] gi|334182730|ref|NP_001185050.1| putative U5
            small nuclear ribonucleoprotein helicase [Arabidopsis
            thaliana] gi|4836892|gb|AAD30595.1|AC007369_5 Putative
            RNA helicase [Arabidopsis thaliana]
            gi|332191925|gb|AEE30046.1| putative U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
            gi|332191926|gb|AEE30047.1| putative U5 small nuclear
            ribonucleoprotein helicase [Arabidopsis thaliana]
          Length = 2171

 Score =  987 bits (2552), Expect(2) = 0.0
 Identities = 477/661 (72%), Positives = 556/661 (84%)
 Frame = -2

Query: 3888 WXSSQGENKIRIVALSSSLANAKDLGEWIGASTHGLFNFSPGVRPVPLEIHIQGIDIANF 3709
            + SSQ  NKIRIVALS+SLANAKDLGEWIGAS+HGLFNF PGVRPVPLEIHIQG+DI++F
Sbjct: 1501 YISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSF 1560

Query: 3708 EARMQAMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQCT 3529
            EARMQAMTKP +T+IVQHAK  KPA+VFVPTRKH RLTA+D++ Y++ D+ +   FL   
Sbjct: 1561 EARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGK 1620

Query: 3528 KEDLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXX 3349
             E+LDPF+ +++E TL   L HG+GYLHEGLSS +QE+VT LF AG IQVCV        
Sbjct: 1621 LEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSSSLCWG 1680

Query: 3348 XXXSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEY 3169
               +AHLVVV+GTQYYDGREN+H+DYP+ DLLQMMGRASRPL+DN+GKCVI CHAPRKEY
Sbjct: 1681 TPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPRKEY 1740

Query: 3168 YKKFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNL 2989
            YKKFLYE FPVES L HFLHD+ NAEVV G IE+KQDAVDYLTWTF+YRRL QNPNYYNL
Sbjct: 1741 YKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNL 1800

Query: 2988 QGVSHRHLSDHLSELVENTLTDLEASKCVAVEEEMYLSPLNLGMIAXXXXXXXXXXXXXX 2809
            QGVSHRHLSDHLSELVENTL+DLEASKC+ VE+EM LSPLNLGMIA              
Sbjct: 1801 QGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTTIERFS 1860

Query: 2808 XXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKANV 2629
                     KGL+EIL SASEY  +PIRPGEE+TV+++I HQRF+ ENPK TDPHVKAN 
Sbjct: 1861 SLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANA 1920

Query: 2628 LLQAHFSRFVVAGNLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVTQGL 2449
            LLQAHFSR  + GNLA+DQR+VLLSA+RLLQAMVDVISSNGWLN AL  ME+SQMVTQG+
Sbjct: 1921 LLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGM 1980

Query: 2448 WERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDIARF 2269
            WERDS+LLQ+PHFTKDLAK+CQENPGK+IETVFDLVEMED+ER+ELL+M+DA LLDIARF
Sbjct: 1981 WERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDIARF 2040

Query: 2268 CNRFPNIDLNYEVLERDDVRTGESVTVQVALERDLEGRLEISPVDAPRYPKQKDEGWWLV 2089
            CNRFPNIDL YE++  ++V  G+ VT+QV LERD+EGR E+ PVD+ RYPK K+EGWWLV
Sbjct: 2041 CNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEEGWWLV 2100

Query: 2088 IGDPSSNQLLAIKRVALQRKAKVKLEFNAPQDVGEKTYTLFFMCDSYLGCDQEYEFTINV 1909
            +GD  +NQLLAIKRV+LQRK KVKL+F AP + GEK+YTL+FMCDSYLGCDQEY F+++V
Sbjct: 2101 VGDTKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDV 2160

Query: 1908 Q 1906
            +
Sbjct: 2161 K 2161



 Score =  399 bits (1024), Expect(2) = 0.0
 Identities = 192/237 (81%), Positives = 213/237 (89%), Gaps = 1/237 (0%)
 Frame = -1

Query: 4591 VEDNDGEQILHHEYFLLKKQYADEDHHLSFTVSIHEPLPPQYFIRVVSDRWLGSQTILPV 4412
            VEDNDGE+ILHHEYFLLKKQY DEDH L FTV I EPLPPQYF+RVVSD+WLGS+T+LPV
Sbjct: 1249 VEDNDGEKILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPV 1308

Query: 4411 SFRHLILPEKYAPPTELLDLQPLPVTALRNPSYEALYHQFKHFNPIQTQVFTVLYNSDDN 4232
            SFRHLILPEKY PPTELLDLQPLPVTALRNP+YE LY  FKHFNP+QTQVFTVLYN++DN
Sbjct: 1309 SFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDN 1368

Query: 4231 VLVAAPTGSGKTICAEFALLRLHQQSPE-NMRCVYIAPLEALAKERLRDWDDKFGRALGL 4055
            VLVAAPTGSGKTICAEFA+LR H + P+  MR VYIAPLEA+AKE+ R W+ KFG+ LGL
Sbjct: 1369 VLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGL 1428

Query: 4054 KVVDLQGESAADLKLLEKANIIISTPEKWDALSRRWKQRKVVQQVNLFIVDELHLMG 3884
            +VV+L GE+A DLKLLEK  IIISTPEKWDALSRRWKQRK VQQV+LFIVDELHL+G
Sbjct: 1429 RVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIG 1485



 Score =  208 bits (529), Expect(2) = 2e-68
 Identities = 156/556 (28%), Positives = 259/556 (46%), Gaps = 9/556 (1%)
 Frame = -2

Query: 3870 ENKIRIVALSSSLANAKDLGEWIGASTH-GLFNFSPGVRPVPLEIHIQGIDIANFEARMQ 3694
            +  IR+V LS++L N +D+  ++      GLF F    RPVPL     GI +     R Q
Sbjct: 667  KENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQ 726

Query: 3693 AMTKPAFTSIVQHAKGSKPALVFVPTRKHARLTALDIVTYANADSGERSQFLQ---CTKE 3523
             M    +  ++  A G    L+FV +RK    TA  I   A A+    S+FL+    T++
Sbjct: 727  LMNDLCYQKVLAGA-GKHQVLIFVHSRKETSKTARAIRDTAMAND-TLSRFLKEDSVTRD 784

Query: 3522 DLDPFLSRVKESTLSHVLAHGVGYLHEGLSSAEQELVTHLFTAGAIQVCVAXXXXXXXXX 3343
             L      VK S L  +L +G    H GLS  ++E+V  LF+ G +QV V+         
Sbjct: 785  VLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVN 844

Query: 3342 XSAHLVVVLGTQYYDGRENAHTDYPITDLLQMMGRASRPLIDNSGKCVILCHAPRKEYYK 3163
              AH V++ GTQ Y+  + A  +    D++QM+GRA RP  D  G+ +I+      +YY 
Sbjct: 845  LPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITGYSELQYYL 904

Query: 3162 KFLYEPFPVESHLDHFLHDHMNAEVVVGTIESKQDAVDYLTWTFLYRRLTQNPNYYNLQG 2983
              + E  P+ES     L D +NAE+V+GT+++ ++A  +L +T+LY R+ +NP  Y L  
Sbjct: 905  SLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAP 964

Query: 2982 ---VSHRHLSDHLSELVENTLTDLEASKCVAVEEEM-YLSPLNLGMIAXXXXXXXXXXXX 2815
                    L +  ++L+ +  T L+ +  V  + +  Y    +LG IA            
Sbjct: 965  DALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIAT 1024

Query: 2814 XXXXXXXXXXXKGLIEILASASEYARLPIRPGEEETVKKMIKHQRFAIENPKPTDPHVKA 2635
                         L  + + + E+  + +R  E+  + K++      I+     +P  K 
Sbjct: 1025 YNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL-EEPSAKI 1083

Query: 2634 NVLLQAHFSRFVVAG-NLALDQREVLLSASRLLQAMVDVISSNGWLNPALATMELSQMVT 2458
            NVLLQA+ S+  + G +L  D   +  SA RL++A+ +++   GW   A   + LS+MV 
Sbjct: 1084 NVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSKMVG 1143

Query: 2457 QGLWERDSVLLQIPHFTKDLAKKCQENPGKSIETVFDLVEMEDDERRELLQMTDADLLDI 2278
            + +W   + L Q    + D+  +  E      E  +DL   E  E     +M       +
Sbjct: 1144 KRMWSVQTPLRQFHGLSNDILMQL-EKKDLVWERYYDLSAQELGELIRSPKMGK----PL 1198

Query: 2277 ARFCNRFPNIDLNYEV 2230
             +F ++FP + L+  V
Sbjct: 1199 HKFIHQFPKVTLSAHV 1214



 Score = 82.0 bits (201), Expect(2) = 2e-68
 Identities = 44/143 (30%), Positives = 82/143 (57%), Gaps = 8/143 (5%)
 Frame = -1

Query: 4291 KHFNPIQTQVFTVLYNSDDNVLVAAPTGSGKTICAEFALLRLHQQSPE--------NMRC 4136
            +  N +Q++V+       +N+L+ APTG+GKT  A   +L+  + +          + + 
Sbjct: 503  QQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKI 562

Query: 4135 VYIAPLEALAKERLRDWDDKFGRALGLKVVDLQGESAADLKLLEKANIIISTPEKWDALS 3956
            VY+AP++AL  E + +  ++  +  G+ V +L G+ +   + +E+  II++TPEKWD ++
Sbjct: 563  VYVAPMKALVAEVVGNLSNRL-KDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIIT 621

Query: 3955 RRWKQRKVVQQVNLFIVDELHLM 3887
            R+   R   Q V L I+DE+HL+
Sbjct: 622  RKSGDRTYTQLVRLLIIDEIHLL 644