BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00001513
         (2161 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN77690.1|AF483277_1 KNOTTED1-like homeodomain protein 2, pa...   301   1e-78
gb|AAV54620.1| homeobox transcription factor KN3 [Pinus taeda]        297   1e-77
emb|CAD58394.2| putative knotted-1-like protein [Helianthus tube...   253   2e-64
gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tab...   249   3e-63
ref|XP_006348162.1| PREDICTED: homeobox protein knotted-1-like L...   244   8e-62
ref|XP_006348160.1| PREDICTED: homeobox protein knotted-1-like L...   244   8e-62
gb|ACR83812.1| brevipedicellus [Brassica napus]                       243   3e-61
ref|XP_002874518.1| hypothetical protein ARALYDRAFT_489727 [Arab...   242   5e-61
dbj|BAJ10713.1| shoot meristemless ortholog [Weddellina squamulosa]   241   7e-61
gb|ACS28249.1| BREVIPEDICELLUS [Brassica rapa]                        241   9e-61
gb|AAV84585.1| knotted-like homeobox protein [Populus tomentosa]      240   2e-60
dbj|BAM95891.1| shoot meristemless protein [Zeylanidium lichenoi...   238   8e-60
gb|AFE48351.1| KNOTTED-like 1-1 homeodomain protein [Cuscuta pen...   238   8e-60
dbj|BAJ10711.1| shoot meristemless ortholog [Polypleurum stylosum]    238   1e-59
ref|XP_004134981.1| PREDICTED: homeobox protein SBH1-like [Cucum...   237   2e-59
gb|AFZ78625.1| knotted-like protein [Populus tomentosa]               236   4e-59
dbj|BAK07974.1| predicted protein [Hordeum vulgare subsp. vulgare]    235   5e-59
dbj|BAJ10708.1| shoot meristemless ortholog [Cladopus doianus]        235   7e-59
ref|XP_002301134.1| kn1-like family protein [Populus trichocarpa...   235   7e-59
gb|AAV49802.1| homeobox transcription factor KN3 [Populus tricho...   235   7e-59

>gb|AAN77690.1|AF483277_1 KNOTTED1-like homeodomain protein 2, partial [Picea abies]
          Length = 383

 Score =  301 bits (770), Expect = 1e-78
 Identities = 163/301 (54%), Positives = 194/301 (64%), Gaps = 4/301 (1%)
 Frame = -1

Query: 1150 ALAHSTGKSLHIQEEDPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNK 971
            +LA     S   +  + D ++AKI+AHVHYPRL+ AY++CQK+GAPP V+SEL+ L Q K
Sbjct: 103  SLAVDMDSSCSCKPIEADAMKAKIIAHVHYPRLVAAYIDCQKVGAPPDVVSELDELSQ-K 161

Query: 970  CQRRQYMSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKD 791
            C  +Q ++TISIG DPELDQFMEAYCE+F+KY+EELT+PFKEA  FLKK+E QL A+TK 
Sbjct: 162  CHAQQCVATISIGADPELDQFMEAYCEMFIKYQEELTKPFKEAMAFLKKIENQLGALTKG 221

Query: 790  HEPLKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLR 611
                 SL                           +          +P AEDR LK+QLLR
Sbjct: 222  TIRTSSLDQGDERGDGAASSEEEDGSGGEVEFHEV----------DPHAEDRELKDQLLR 271

Query: 610  KYSGYLSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQK 431
            KYSGYLS                KEARQKLLDWWT +YKWPYPSE+QKIALAE+TGLDQK
Sbjct: 272  KYSGYLSSLKQEFLKKKKKGKLPKEARQKLLDWWTRNYKWPYPSESQKIALAESTGLDQK 331

Query: 430  QINNWFINQRKRHWKPSEEMQFVVMETPATRHHPHPHIF----HLAPDGNPHQTFSMSMD 263
            QINNWFINQRKRHWKPSEEMQFVVM++P    +PH   F    HL  DG      + SMD
Sbjct: 332  QINNWFINQRKRHWKPSEEMQFVVMDSP----NPHNAAFFLEGHLRTDGT-----AFSMD 382

Query: 262  C 260
            C
Sbjct: 383  C 383


>gb|AAV54620.1| homeobox transcription factor KN3 [Pinus taeda]
          Length = 470

 Score =  297 bits (760), Expect = 1e-77
 Identities = 160/301 (53%), Positives = 191/301 (63%), Gaps = 4/301 (1%)
 Frame = -1

Query: 1150 ALAHSTGKSLHIQEEDPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNK 971
            +LA     S   +  + D +RAKI+AHVHYPRL+ AY++CQK+GAPP V+ EL+ L  +K
Sbjct: 190  SLAVDMDSSCSCKPNEADAMRAKIIAHVHYPRLVAAYIDCQKVGAPPEVVLELDDL-SHK 248

Query: 970  CQRRQYMSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKD 791
            CQ +  + TIS+G DPELDQFMEAYCE+F+KY+EELT+PFKEA  FLKK+E QL  +TK 
Sbjct: 249  CQTQHCVPTISVGADPELDQFMEAYCEMFIKYQEELTKPFKEAMAFLKKIENQLGTLTKG 308

Query: 790  HEPLKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLR 611
                 SL                           +          +P AEDR LK+QLLR
Sbjct: 309  TIRTSSLDQGDERGDGAASSEEEDGSGGEVEFHEV----------DPHAEDRELKDQLLR 358

Query: 610  KYSGYLSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQK 431
            KYSGYLS                KEARQKLLDWWT +YKWPYPSE+QKIALAE+TGLDQK
Sbjct: 359  KYSGYLSSLKQEFLKKKKKGKLPKEARQKLLDWWTRNYKWPYPSESQKIALAESTGLDQK 418

Query: 430  QINNWFINQRKRHWKPSEEMQFVVMETPATRHHPHPHIF----HLAPDGNPHQTFSMSMD 263
            QINNWFINQRKRHWKPSEEMQFVVM++P    +PH   F    HL  DG      + SMD
Sbjct: 419  QINNWFINQRKRHWKPSEEMQFVVMDSP----NPHNAAFFLEGHLRTDGT-----AFSMD 469

Query: 262  C 260
            C
Sbjct: 470  C 470


>emb|CAD58394.2| putative knotted-1-like protein [Helianthus tuberosus]
          Length = 348

 Score =  253 bits (647), Expect = 2e-64
 Identities = 139/285 (48%), Positives = 167/285 (58%), Gaps = 16/285 (5%)
 Frame = -1

Query: 1093 IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQRRQY------------- 953
            ++AKIM+H HYPRLL+AYL CQKIGAPP V+  LE   +                     
Sbjct: 77   VKAKIMSHPHYPRLLSAYLNCQKIGAPPEVVERLEEACRASVMAAMSSRSGSDGAGTSGG 136

Query: 952  ---MSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEP 782
               MS+  +G DP LDQFMEAYCE+ +KY++EL++PFKEA  FL ++E Q  AIT  +  
Sbjct: 137  GAGMSSSIVGQDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLSRMESQFKAITFSNSD 196

Query: 781  LKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYS 602
                                       + E +    + +G  +P AEDR LK QLLRKYS
Sbjct: 197  --------------SGCGEGGMDRNGSSEEELDVDMNNNGMVDPQAEDRELKGQLLRKYS 242

Query: 601  GYLSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQIN 422
            GYL                 KEARQ+LLDWWT HYKWPYPSEAQK+ALAE+TGLDQKQIN
Sbjct: 243  GYLGSLKQEFMKKRKEGKLPKEARQQLLDWWTRHYKWPYPSEAQKLALAESTGLDQKQIN 302

Query: 421  NWFINQRKRHWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGNPH 287
            NWFINQRKRHWKPSE+MQFVVM+        HPH F     GNP+
Sbjct: 303  NWFINQRKRHWKPSEDMQFVVMDA------AHPHYFIDNIFGNPY 341


>gb|AAO11694.1| Knotted-1-like homeobox protein H1 [Nicotiana tabacum]
          Length = 343

 Score =  249 bits (636), Expect = 3e-63
 Identities = 142/315 (45%), Positives = 182/315 (57%), Gaps = 10/315 (3%)
 Frame = -1

Query: 1204 DGKDNVKNSVNPPLVVTPALAHSTGKSLHIQEEDPDVIRAKIMAHVHYPRLLTAYLECQK 1025
            +  +N+  + N  ++  P + ++              I++KIMAH HYPRLL+AY+ CQK
Sbjct: 50   ESSNNIGGNNNNNILFLPFMDNNNNNPHEDANCSSTSIKSKIMAHPHYPRLLSAYVNCQK 109

Query: 1024 IGAPPSVLSELETLHQNKCQRRQYMSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKE 845
            IGAPP V++ LE +        +    I IG DP LDQFMEAYCE+  KY++EL++PFKE
Sbjct: 110  IGAPPEVVARLEEVCATSATIGRNSGGI-IGEDPALDQFMEAYCEMLTKYEQELSKPFKE 168

Query: 844  ATEFLKKVEMQLSAIT--KDHEPLKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTH 671
            A  FL ++E Q  A+T     E + +L                         E+I R+ +
Sbjct: 169  AMVFLSRIECQFKALTLTSSSESVAALG------------------------EAIDRNGN 204

Query: 670  G--------HGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXXXXXXXXXXXKEARQKLLD 515
            G        +G  +  AED+ LK QLLRKYSGYL                 KEARQ+LLD
Sbjct: 205  GSSEEVDVNNGFIDLQAEDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLD 264

Query: 514  WWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHWKPSEEMQFVVMETPATRH 335
            WWT HYKWPYPSE+QK+ALAE+TGLDQKQINNWFINQRKRHWKPSE+MQFVVM+      
Sbjct: 265  WWTRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDA----- 319

Query: 334  HPHPHIFHLAPDGNP 290
              HPH +     GNP
Sbjct: 320  -AHPHYYMDNVLGNP 333


>ref|XP_006348162.1| PREDICTED: homeobox protein knotted-1-like LET6-like isoform X3
            [Solanum tuberosum]
          Length = 334

 Score =  244 bits (624), Expect = 8e-62
 Identities = 134/261 (51%), Positives = 158/261 (60%), Gaps = 5/261 (1%)
 Frame = -1

Query: 1093 IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQR-RQYMSTISIGVDPEL 917
            I++KIMAH HYPRLL AYL CQKIGAPP V++ LE +        R   S   IG DP L
Sbjct: 75   IKSKIMAHPHYPRLLAAYLSCQKIGAPPEVVARLEEICATSATMGRNSSSGGIIGEDPAL 134

Query: 916  DQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAIT----KDHEPLKSLXXXXXXX 749
            DQFMEAYCE+  KY++EL++PFKEA  FL ++E Q  A+T      HE + +L       
Sbjct: 135  DQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESVVALGEAMDRN 194

Query: 748  XXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXX 569
                               S       +   +P AEDR LK QLLRKYSGYL        
Sbjct: 195  G-----------------SSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFM 237

Query: 568  XXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHW 389
                     KEARQ+L+DWW  H KWPYPSE+QK+ALAE+TGLDQKQINNWFINQRKRHW
Sbjct: 238  KKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 297

Query: 388  KPSEEMQFVVMETPATRHHPH 326
            KPSE+MQFVVM+      HPH
Sbjct: 298  KPSEDMQFVVMDAA----HPH 314


>ref|XP_006348160.1| PREDICTED: homeobox protein knotted-1-like LET6-like isoform X1
            [Solanum tuberosum]
          Length = 345

 Score =  244 bits (624), Expect = 8e-62
 Identities = 134/261 (51%), Positives = 158/261 (60%), Gaps = 5/261 (1%)
 Frame = -1

Query: 1093 IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQR-RQYMSTISIGVDPEL 917
            I++KIMAH HYPRLL AYL CQKIGAPP V++ LE +        R   S   IG DP L
Sbjct: 86   IKSKIMAHPHYPRLLAAYLSCQKIGAPPEVVARLEEICATSATMGRNSSSGGIIGEDPAL 145

Query: 916  DQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAIT----KDHEPLKSLXXXXXXX 749
            DQFMEAYCE+  KY++EL++PFKEA  FL ++E Q  A+T      HE + +L       
Sbjct: 146  DQFMEAYCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESVVALGEAMDRN 205

Query: 748  XXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXX 569
                               S       +   +P AEDR LK QLLRKYSGYL        
Sbjct: 206  G-----------------SSDEEVDVNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFM 248

Query: 568  XXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHW 389
                     KEARQ+L+DWW  H KWPYPSE+QK+ALAE+TGLDQKQINNWFINQRKRHW
Sbjct: 249  KKRKKGKLPKEARQQLVDWWLRHIKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHW 308

Query: 388  KPSEEMQFVVMETPATRHHPH 326
            KPSE+MQFVVM+      HPH
Sbjct: 309  KPSEDMQFVVMDAA----HPH 325


>gb|ACR83812.1| brevipedicellus [Brassica napus]
          Length = 358

 Score =  243 bits (619), Expect = 3e-61
 Identities = 134/281 (47%), Positives = 170/281 (60%), Gaps = 10/281 (3%)
 Frame = -1

Query: 1105 DPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN--KCQRRQYMSTISIG 932
            D + ++AKI+AH HY  LL AYL+CQKIGAPP V+ ++    Q     Q+R   S  ++ 
Sbjct: 89   DMESMKAKIIAHPHYSTLLHAYLDCQKIGAPPEVVDKITAATQEFEARQQRPTASVTALS 148

Query: 931  VDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXX 752
             DPELDQFMEAYC++ VKY+EELTRP +EA E+++++E Q+S + +   P+  L      
Sbjct: 149  RDPELDQFMEAYCDMLVKYREELTRPIEEAMEYIRRIESQISMLCQG--PIHIL------ 200

Query: 751  XXXXXXXXXXXXXXXXDAMESIHRHTHGHGHG--------NPLAEDRALKEQLLRKYSGY 596
                            + MES       +  G        +P AEDR LK  LL+KYSGY
Sbjct: 201  ---------NNPDGKSEGMESSDEEQDNNNSGGEAELPEIDPRAEDRELKNHLLKKYSGY 251

Query: 595  LSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNW 416
            LS                KEARQKLL WW  HYKWPYPSE++K+ALAE+TGLDQKQINNW
Sbjct: 252  LSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNW 311

Query: 415  FINQRKRHWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGN 293
            FINQRKRHWKPSE+MQF+VM+        HPH   L  DG+
Sbjct: 312  FINQRKRHWKPSEDMQFMVMD-----GLQHPHHAALYMDGH 347


>ref|XP_002874518.1| hypothetical protein ARALYDRAFT_489727 [Arabidopsis lyrata subsp.
            lyrata] gi|297320355|gb|EFH50777.1| hypothetical protein
            ARALYDRAFT_489727 [Arabidopsis lyrata subsp. lyrata]
          Length = 395

 Score =  242 bits (617), Expect = 5e-61
 Identities = 135/278 (48%), Positives = 169/278 (60%), Gaps = 7/278 (2%)
 Frame = -1

Query: 1105 DPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQRRQYMSTISIGV- 929
            D + ++AKI+AH HY  LL AYL+CQKIGAPP V+  +    Q+  + RQ   T S+   
Sbjct: 126  DVEAMKAKIIAHPHYSTLLQAYLDCQKIGAPPEVVDRITAARQD-FEARQQRPTPSVSAS 184

Query: 928  --DPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXX 755
              DPELDQFMEAYC++ VKY+EELTRP +EA EF++++E QLS + +   P+  L     
Sbjct: 185  SRDPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQ--SPIHIL----- 237

Query: 754  XXXXXXXXXXXXXXXXXDAMESIHRHTHGH----GHGNPLAEDRALKEQLLRKYSGYLSG 587
                              + +    +T G        +P AEDR LK  LL+KYSGYLS 
Sbjct: 238  ------NNPADGKSEGMGSSDEEQENTSGGETELPEIDPRAEDRELKNHLLKKYSGYLSS 291

Query: 586  XXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFIN 407
                           KEARQKLL WW  HYKWPYPSE++K+ALAE+TGLDQKQINNWFIN
Sbjct: 292  LKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFIN 351

Query: 406  QRKRHWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGN 293
            QRKRHWKPSE+MQF+VM+        HPH   L  DG+
Sbjct: 352  QRKRHWKPSEDMQFMVMD-----GLQHPHHAALYMDGH 384


>dbj|BAJ10713.1| shoot meristemless ortholog [Weddellina squamulosa]
          Length = 356

 Score =  241 bits (616), Expect = 7e-61
 Identities = 134/275 (48%), Positives = 162/275 (58%), Gaps = 7/275 (2%)
 Frame = -1

Query: 1093 IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQRRQYMSTISIGVDPELD 914
            I+AKIM+H HY RLL+AY+ CQK+GAPP V++ LE             +   IG DP LD
Sbjct: 102  IKAKIMSHPHYTRLLSAYVNCQKVGAPPEVVARLEEARAAAAAAALGPAGGCIGQDPALD 161

Query: 913  QFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXXXXXXX 734
            QFMEAYCE+  KY++EL++P KEA  FL++VE Q  A+T                     
Sbjct: 162  QFMEAYCEMLTKYEQELSKPLKEAMLFLQRVEFQFKALTLSSP----------------- 204

Query: 733  XXXXXXXXXXDAMESIHRHTHGH--GHGN-----PLAEDRALKEQLLRKYSGYLSGXXXX 575
                       + E+  R+      G GN     P AEDR LK QLLR+YSGYL      
Sbjct: 205  -------CSGYSGEANERNASSEEEGDGNNVFIDPQAEDRELKGQLLRRYSGYLGSLKQE 257

Query: 574  XXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKR 395
                       KEARQ+LLDWW+ HYKWPYPSE+QK+ALAE+TGLDQKQINNWFINQRKR
Sbjct: 258  FMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKR 317

Query: 394  HWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGNP 290
            HWKPSE+MQFVVM+        HPH +     GNP
Sbjct: 318  HWKPSEDMQFVVMDA------AHPHYYMDNVLGNP 346


>gb|ACS28249.1| BREVIPEDICELLUS [Brassica rapa]
          Length = 383

 Score =  241 bits (615), Expect = 9e-61
 Identities = 133/281 (47%), Positives = 169/281 (60%), Gaps = 10/281 (3%)
 Frame = -1

Query: 1105 DPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN--KCQRRQYMSTISIG 932
            D + ++AKI+AH HY  LL AYL+CQKIGAPP V+ ++    Q     Q+R   S  ++ 
Sbjct: 114  DMESMKAKIIAHPHYSTLLHAYLDCQKIGAPPEVVDKITAARQEFEARQQRPTASVTALS 173

Query: 931  VDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXX 752
             DPELDQFMEAYC++ VKY+EELTRP +EA E+++++E Q+S + +   P+  L      
Sbjct: 174  RDPELDQFMEAYCDMLVKYREELTRPIEEAMEYIRRIESQISMLCQG--PIHIL------ 225

Query: 751  XXXXXXXXXXXXXXXXDAMESIHRHTHGHGHG--------NPLAEDRALKEQLLRKYSGY 596
                            + MES       +  G        +P AEDR LK  LL+KYSGY
Sbjct: 226  ---------NNPDGKSEGMESSDEEQDNNNSGGEAELPEIDPRAEDRELKNHLLKKYSGY 276

Query: 595  LSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNW 416
            LS                KEARQKLL WW  HYKWPYPSE++K+A AE+TGLDQKQINNW
Sbjct: 277  LSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYPSESEKVASAESTGLDQKQINNW 336

Query: 415  FINQRKRHWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGN 293
            FINQRKRHWKPSE+MQF+VM+        HPH   L  DG+
Sbjct: 337  FINQRKRHWKPSEDMQFMVMD-----GLQHPHHAALYMDGH 372


>gb|AAV84585.1| knotted-like homeobox protein [Populus tomentosa]
          Length = 368

 Score =  240 bits (612), Expect = 2e-60
 Identities = 123/250 (49%), Positives = 156/250 (62%), Gaps = 1/250 (0%)
 Frame = -1

Query: 1099 DVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN-KCQRRQYMSTISIGVDP 923
            + I+AKI+AH  Y  LL AY++CQK+GAPP V++ L    Q  + ++R ++++     DP
Sbjct: 106  EAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNSKDP 165

Query: 922  ELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXXXX 743
            ELDQFMEAYC++ VKY+EELTRP +EA +F++++E QL+ I   H PL+           
Sbjct: 166  ELDQFMEAYCDMLVKYREELTRPIQEAMDFMRRIETQLNMIC--HGPLRIFNSDDKSEGV 223

Query: 742  XXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXXXX 563
                           +  I          +P AEDR LK  LLRKYSGYL          
Sbjct: 224  GSSEDDQDNSGGETELPEI----------DPRAEDRELKNHLLRKYSGYLGSLKQELSKK 273

Query: 562  XXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHWKP 383
                   KEARQKLL WW  HYKWPYPSE +K+ALAE TGLDQKQINNWFINQRKRHWKP
Sbjct: 274  KKKGKLPKEARQKLLSWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKP 333

Query: 382  SEEMQFVVME 353
            SE+MQF+VM+
Sbjct: 334  SEDMQFMVMD 343


>dbj|BAM95891.1| shoot meristemless protein [Zeylanidium lichenoides]
          Length = 347

 Score =  238 bits (607), Expect = 8e-60
 Identities = 134/275 (48%), Positives = 161/275 (58%), Gaps = 7/275 (2%)
 Frame = -1

Query: 1093 IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQRRQYMSTISIGVDPELD 914
            I+AKIM+H HY RLL+AY+ CQKIGAPP V++ LE             S   +G DP LD
Sbjct: 94   IKAKIMSHPHYNRLLSAYVNCQKIGAPPEVVARLEEARAAAAAALG-PSDACLGQDPALD 152

Query: 913  QFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXXXXXXX 734
            QFMEAYCE+  KY++EL++P KEA  FL++VE Q  A+T                     
Sbjct: 153  QFMEAYCEMLTKYEQELSKPLKEAMVFLQRVEYQFKALTVSSP----------------- 195

Query: 733  XXXXXXXXXXDAMESIHRHTHG--HGHGN-----PLAEDRALKEQLLRKYSGYLSGXXXX 575
                       + E+  R+      G GN     P AED+ LK QLLR+YSGYL      
Sbjct: 196  -------NSGYSGEANERNASSDEEGDGNNVFIDPQAEDQELKGQLLRRYSGYLGSLKQE 248

Query: 574  XXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKR 395
                       KEARQ+LLDWW  HYKWPYPSE+QK+ALAE+TGLDQKQINNWFINQRKR
Sbjct: 249  FMKKRKKGKLPKEARQQLLDWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKR 308

Query: 394  HWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGNP 290
            HWKPSE+MQFVVM+        HPH +     GNP
Sbjct: 309  HWKPSEDMQFVVMDA------AHPHYYTDNVIGNP 337


>gb|AFE48351.1| KNOTTED-like 1-1 homeodomain protein [Cuscuta pentagona]
          Length = 390

 Score =  238 bits (607), Expect = 8e-60
 Identities = 129/264 (48%), Positives = 162/264 (61%), Gaps = 1/264 (0%)
 Frame = -1

Query: 1144 AHSTGKSLHIQEEDPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN-KC 968
            A + G    + E DP  ++AKI++H HY  LL A+++CQK+GAPP V++ L T  Q  + 
Sbjct: 90   ADAAGAGNSLGEVDP--VKAKIVSHPHYFNLLEAFIDCQKVGAPPEVVARLTTARQEAEG 147

Query: 967  QRRQYMSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDH 788
            ++R    +I    DPELDQFM AYCE  VK +EEL RPF EA EF++++E QL+ +    
Sbjct: 148  KQRASFGSIDFSKDPELDQFMGAYCETLVKCREELERPFAEAMEFMRRIESQLNLLCD-- 205

Query: 787  EPLKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRK 608
             PL+S+                         E+  R        +P A+DR LK  LLRK
Sbjct: 206  APLRSIFNSEGDEKYCEGVGSSEEDQDNSGGEAEVRDM------DPRAQDRELKNHLLRK 259

Query: 607  YSGYLSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQ 428
            YSGYLSG               KEARQKLL WW  HYKWPYPSE++K+ALAEA GLDQKQ
Sbjct: 260  YSGYLSGLKQELSKKKKKGKLPKEARQKLLSWWELHYKWPYPSESEKVALAEAPGLDQKQ 319

Query: 427  INNWFINQRKRHWKPSEEMQFVVM 356
            INNWFINQRKRHWKPSE+MQF+VM
Sbjct: 320  INNWFINQRKRHWKPSEDMQFMVM 343


>dbj|BAJ10711.1| shoot meristemless ortholog [Polypleurum stylosum]
          Length = 352

 Score =  238 bits (606), Expect = 1e-59
 Identities = 140/301 (46%), Positives = 168/301 (55%), Gaps = 14/301 (4%)
 Frame = -1

Query: 1150 ALAHSTGKSLHIQEEDPDV-------IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSEL 992
            A A+STG      + D          I+AKIM+H HY RLL+AY+ CQKIGAPP V++ L
Sbjct: 73   ATANSTGAGCFFVDNDVHEGINTTCSIKAKIMSHPHYNRLLSAYVNCQKIGAPPEVVARL 132

Query: 991  ETLHQNKCQRRQYMSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQ 812
            E             S   +G DP LDQFMEAYCE+  KY++EL++P KEA  FL++VE Q
Sbjct: 133  EEARAAAAAALG-PSDGCLGQDPALDQFMEAYCEMLTKYEQELSKPLKEAMVFLQRVEYQ 191

Query: 811  LSAITKDHEPLKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTHG--HGHGN----- 653
              A+T                                + E   R+      G GN     
Sbjct: 192  FKALTVSSP------------------------NSGYSGEGNERNASSDEEGDGNNVFID 227

Query: 652  PLAEDRALKEQLLRKYSGYLSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEA 473
            P AED+ LK QLLR+YSGYL                 KEARQ+LLDWW  HYKWPYPSE+
Sbjct: 228  PQAEDQELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWNRHYKWPYPSES 287

Query: 472  QKIALAEATGLDQKQINNWFINQRKRHWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGN 293
            QK+ALAE+TGLDQKQINNWFINQRKRHWKPSE+MQFVVM+        HPH +     GN
Sbjct: 288  QKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDA------AHPHYYMDNVIGN 341

Query: 292  P 290
            P
Sbjct: 342  P 342


>ref|XP_004134981.1| PREDICTED: homeobox protein SBH1-like [Cucumis sativus]
            gi|449518023|ref|XP_004166043.1| PREDICTED: homeobox
            protein SBH1-like [Cucumis sativus]
          Length = 340

 Score =  237 bits (604), Expect = 2e-59
 Identities = 130/274 (47%), Positives = 163/274 (59%), Gaps = 6/274 (2%)
 Frame = -1

Query: 1093 IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQNKCQRRQYMSTIS-----IGV 929
            ++AKIMAH HY RLL AY+ C+K+GAPP V++ LE      C     MS+ +     IG 
Sbjct: 84   VKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLE----EACASAVTMSSGNNGGGCIGE 139

Query: 928  DPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXX 749
            DP LDQFMEAYCE+  KY++EL++PF++A  FL++++ Q  A++     L          
Sbjct: 140  DPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHLPPACGEAFDR 199

Query: 748  XXXXXXXXXXXXXXXDAMESIHRHTHGHGHG-NPLAEDRALKEQLLRKYSGYLSGXXXXX 572
                               S       +GH  +P AEDR LK QLLRKYSGYL       
Sbjct: 200  NG-----------------SSEEEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEF 242

Query: 571  XXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRH 392
                      KEARQ+LLDWW+ HYKWPYPSE+QK+ALA++TGLDQKQINNWFINQRKRH
Sbjct: 243  MKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRH 302

Query: 391  WKPSEEMQFVVMETPATRHHPHPHIFHLAPDGNP 290
            WKPSE+MQFVVM+        HP  +     GNP
Sbjct: 303  WKPSEDMQFVVMDA------AHPQYYMDTVLGNP 330


>gb|AFZ78625.1| knotted-like protein [Populus tomentosa]
          Length = 368

 Score =  236 bits (601), Expect = 4e-59
 Identities = 122/250 (48%), Positives = 155/250 (62%), Gaps = 1/250 (0%)
 Frame = -1

Query: 1099 DVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN-KCQRRQYMSTISIGVDP 923
            + I+AKI+AH  Y  LL AY++CQK+GAPP V++ L    Q  + ++R ++++     DP
Sbjct: 106  EAIKAKIIAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNSKDP 165

Query: 922  ELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXXXX 743
            ELDQFMEAY ++ VKY+EELTRP +EA +F++++E QL+ I   H PL+           
Sbjct: 166  ELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMIC--HGPLRIFNSDDKSEGV 223

Query: 742  XXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXXXX 563
                           +  I          +P AEDR LK  LLRKYSGYL          
Sbjct: 224  GSSEDDQDNSGGETELPEI----------DPRAEDRELKNHLLRKYSGYLGSLKQELSKK 273

Query: 562  XXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHWKP 383
                   KEARQKLL WW  HYKWPYPSE +K+ALAE TGLDQKQINNWFINQRKRHWKP
Sbjct: 274  KKKGKLPKEARQKLLSWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKP 333

Query: 382  SEEMQFVVME 353
            SE+MQF+VM+
Sbjct: 334  SEDMQFMVMD 343


>dbj|BAK07974.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 364

 Score =  235 bits (600), Expect = 5e-59
 Identities = 126/273 (46%), Positives = 167/273 (61%), Gaps = 7/273 (2%)
 Frame = -1

Query: 1105 DPDVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN-KCQRRQYMSTISIGV 929
            D + I+AKI++H HY  LL AYL+CQK+GAPP V + L  + Q+ + ++R  +  +    
Sbjct: 104  DVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVSARLTAVAQDLELRQRTALGGLGTAT 163

Query: 928  DPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXX 749
            +PELDQFMEAY E+ VKY+EELTRP +EA EFL++VE QL++++     L+++       
Sbjct: 164  EPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNSLSISGRSLRNIL------ 217

Query: 748  XXXXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAE------DRALKEQLLRKYSGYLSG 587
                            +  S      G G    LAE      D+ LK  LL+KYSGYLS 
Sbjct: 218  ----------------STGSSEEDQEGSGGETELAEIDAHGVDQELKHHLLKKYSGYLSS 261

Query: 586  XXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFIN 407
                           KEARQ+LL WW  HYKWPYPSE+QK+ALAE+TGLD KQINNWFIN
Sbjct: 262  LKQELSKKKKKGKLPKEARQQLLSWWEMHYKWPYPSESQKVALAESTGLDLKQINNWFIN 321

Query: 406  QRKRHWKPSEEMQFVVMETPATRHHPHPHIFHL 308
            QRKRHWKP++EMQFV+M+     +HP    F++
Sbjct: 322  QRKRHWKPTDEMQFVMMDA----YHPPNAAFYM 350


>dbj|BAJ10708.1| shoot meristemless ortholog [Cladopus doianus]
          Length = 352

 Score =  235 bits (599), Expect = 7e-59
 Identities = 139/301 (46%), Positives = 168/301 (55%), Gaps = 14/301 (4%)
 Frame = -1

Query: 1150 ALAHSTGKSLHIQEEDPDV-------IRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSEL 992
            A A+STG      E +          I+AKIM+H HY RLL AY+ CQKIGAPP V++ L
Sbjct: 73   ATANSTGAGCFFVENNVHEGINTTCSIKAKIMSHPHYNRLLLAYVNCQKIGAPPEVVARL 132

Query: 991  ETLHQNKCQRRQYMSTISIGVDPELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQ 812
            E             S   +G DP LDQFMEAYCE+  KY++EL++P KEA  FL++VE Q
Sbjct: 133  EEARVAAAAALG-PSDSCLGQDPALDQFMEAYCEMLTKYEQELSKPLKEAMVFLQRVEYQ 191

Query: 811  LSAITKDHEPLKSLXXXXXXXXXXXXXXXXXXXXXXDAMESIHRHTHG--HGHGN----- 653
              A+T                                + E+  R+      G GN     
Sbjct: 192  FKALTVSSP------------------------NSGYSGEANERNASSDEEGDGNNVFID 227

Query: 652  PLAEDRALKEQLLRKYSGYLSGXXXXXXXXXXXXXXXKEARQKLLDWWTSHYKWPYPSEA 473
            P AED+ LK QLLR+YSGYL                 KEARQ+LLDWW+ HYKWPYPSE+
Sbjct: 228  PQAEDQELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSES 287

Query: 472  QKIALAEATGLDQKQINNWFINQRKRHWKPSEEMQFVVMETPATRHHPHPHIFHLAPDGN 293
            QK+ALAE+TGLDQKQINNWFINQRKRHWKPSE+MQF VM+        HPH +     GN
Sbjct: 288  QKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFAVMD------GAHPHYYMDNVIGN 341

Query: 292  P 290
            P
Sbjct: 342  P 342


>ref|XP_002301134.1| kn1-like family protein [Populus trichocarpa]
            gi|222842860|gb|EEE80407.1| kn1-like family protein
            [Populus trichocarpa] gi|225626279|gb|ACN97189.1| KNOX
            transcription factor [Populus trichocarpa]
          Length = 368

 Score =  235 bits (599), Expect = 7e-59
 Identities = 121/250 (48%), Positives = 155/250 (62%), Gaps = 1/250 (0%)
 Frame = -1

Query: 1099 DVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN-KCQRRQYMSTISIGVDP 923
            + I+AKI+AH  Y  L+ AY++CQK+GAPP V++ L    Q  + ++R ++++     DP
Sbjct: 106  EAIKAKIIAHPQYSNLMEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNSKDP 165

Query: 922  ELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXXXX 743
            ELDQFMEAY ++ VKY+EELTRP +EA +F++++E QL+ I   H PL+           
Sbjct: 166  ELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMIC--HGPLRIFNSDDKSEGV 223

Query: 742  XXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXXXX 563
                           +  I          +P AEDR LK  LLRKYSGYL          
Sbjct: 224  GSSEDDQDNSGGETELPEI----------DPRAEDRELKNHLLRKYSGYLGSLKQELSKK 273

Query: 562  XXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHWKP 383
                   KEARQKLL WW  HYKWPYPSE +K+ALAE TGLDQKQINNWFINQRKRHWKP
Sbjct: 274  KKKGKLPKEARQKLLSWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKP 333

Query: 382  SEEMQFVVME 353
            SE+MQF+VM+
Sbjct: 334  SEDMQFMVMD 343


>gb|AAV49802.1| homeobox transcription factor KN3 [Populus trichocarpa x Populus
            deltoides]
          Length = 368

 Score =  235 bits (599), Expect = 7e-59
 Identities = 121/250 (48%), Positives = 155/250 (62%), Gaps = 1/250 (0%)
 Frame = -1

Query: 1099 DVIRAKIMAHVHYPRLLTAYLECQKIGAPPSVLSELETLHQN-KCQRRQYMSTISIGVDP 923
            + I+AKI+AH  Y  L+ AY++CQK+GAPP V++ L    Q  + ++R ++++     DP
Sbjct: 106  EAIKAKIIAHPQYSNLMEAYMDCQKVGAPPEVVARLAAARQEFESRQRSFITSRDNSKDP 165

Query: 922  ELDQFMEAYCELFVKYKEELTRPFKEATEFLKKVEMQLSAITKDHEPLKSLXXXXXXXXX 743
            ELDQFMEAY ++ VKY+EELTRP +EA +F++++E QL+ I   H PL+           
Sbjct: 166  ELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMIC--HGPLRIFNSDDKSEGV 223

Query: 742  XXXXXXXXXXXXXDAMESIHRHTHGHGHGNPLAEDRALKEQLLRKYSGYLSGXXXXXXXX 563
                           +  I          +P AEDR LK  LLRKYSGYL          
Sbjct: 224  GSSEDDQDNSGGETELPEI----------DPRAEDRELKNHLLRKYSGYLGSLKQELSKK 273

Query: 562  XXXXXXXKEARQKLLDWWTSHYKWPYPSEAQKIALAEATGLDQKQINNWFINQRKRHWKP 383
                   KEARQKLL WW  HYKWPYPSE +K+ALAE TGLDQKQINNWFINQRKRHWKP
Sbjct: 274  KKKGKLPKEARQKLLSWWELHYKWPYPSETEKVALAETTGLDQKQINNWFINQRKRHWKP 333

Query: 382  SEEMQFVVME 353
            SE+MQF+VM+
Sbjct: 334  SEDMQFMVMD 343