BLASTX nr result
ID: Ephedra27_contig00001377
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00001377
(1445 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28783.3| unnamed protein product [Vitis vinifera] 659 0.0
ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis v... 659 0.0
ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [A... 657 0.0
ref|XP_001773330.1| predicted protein [Physcomitrella patens] gi... 632 e-179
ref|XP_002300344.1| DNA topoisomerase family protein [Populus tr... 629 e-177
ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|A... 628 e-177
gb|AFW61219.1| DNA topoisomerase I [Zea mays] 627 e-177
ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza b... 627 e-177
ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform ... 627 e-177
ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform ... 627 e-177
ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus ... 627 e-177
gb|ACL52396.1| unknown [Zea mays] 626 e-177
gb|AFW61218.1| hypothetical protein ZEAMMB73_011101 [Zea mays] 624 e-176
ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinife... 624 e-176
dbj|BAG31377.1| topoisomerase I [Catharanthus roseus] 624 e-176
ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group] g... 623 e-176
gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [The... 622 e-175
gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma ca... 622 e-175
gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma ca... 622 e-175
ref|XP_006279572.1| hypothetical protein CARUB_v10025842mg [Caps... 622 e-175
>emb|CBI28783.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 659 bits (1699), Expect = 0.0
Identities = 315/413 (76%), Positives = 355/413 (85%), Gaps = 1/413 (0%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTP 378
K KK S K KS K+PP SG+GQKWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTP
Sbjct: 155 KKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTP 214
Query: 379 EEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEK 558
E+EEVAT FAVMK+TDYATKP+F+ENF +DW+ LG HVI+KFELCDFTPIYEWH +EK
Sbjct: 215 EQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEK 274
Query: 559 EKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 738
EKKKQM+T DKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 275 EKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 334
Query: 739 KKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAA 918
KKRI P DITIN+G++AP+PEC +PG RWKE+RHDNTVTWLA+WNDPINPKEFKYVFLAA
Sbjct: 335 KKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAA 394
Query: 919 SSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGN 1098
SS+LKG SDKEKYEKAR+LK+YI++IR TY+ +F +KD K+QIAVATYLID+LALRAGN
Sbjct: 395 SSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGN 454
Query: 1099 EKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKE 1278
EKDDDEADTVGCCTLKVENVALV P+ ++FDFLGKDSIRYFNTV V+ VYKAIG+FK
Sbjct: 455 EKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTG 514
Query: 1279 KRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVD 1434
K DDLFD+LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +E G D
Sbjct: 515 KSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGD 567
>ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 883
Score = 659 bits (1699), Expect = 0.0
Identities = 315/413 (76%), Positives = 355/413 (85%), Gaps = 1/413 (0%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTP 378
K KK S K KS K+PP SG+GQKWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTP
Sbjct: 314 KKSKKLAKSSKYSKSTKVPPNSGEGQKWTTLEHNGVIFPPPYKPHGVKMLYNGRPVDLTP 373
Query: 379 EEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEK 558
E+EEVAT FAVMK+TDYATKP+F+ENF +DW+ LG HVI+KFELCDFTPIYEWH +EK
Sbjct: 374 EQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNHVIKKFELCDFTPIYEWHEKEK 433
Query: 559 EKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 738
EKKKQM+T DKYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL
Sbjct: 434 EKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKL 493
Query: 739 KKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAA 918
KKRI P DITIN+G++AP+PEC +PG RWKE+RHDNTVTWLA+WNDPINPKEFKYVFLAA
Sbjct: 494 KKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWNDPINPKEFKYVFLAA 553
Query: 919 SSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGN 1098
SS+LKG SDKEKYEKAR+LK+YI++IR TY+ +F +KD K+QIAVATYLID+LALRAGN
Sbjct: 554 SSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLIDKLALRAGN 613
Query: 1099 EKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKE 1278
EKDDDEADTVGCCTLKVENVALV P+ ++FDFLGKDSIRYFNTV V+ VYKAIG+FK
Sbjct: 614 EKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVYKAIGQFKTG 673
Query: 1279 KRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVD 1434
K DDLFD+LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +E G D
Sbjct: 674 KSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARGGD 726
>ref|XP_006856202.1| hypothetical protein AMTR_s00059p00193620 [Amborella trichopoda]
gi|548860061|gb|ERN17669.1| hypothetical protein
AMTR_s00059p00193620 [Amborella trichopoda]
Length = 884
Score = 657 bits (1696), Expect = 0.0
Identities = 312/407 (76%), Positives = 353/407 (86%)
Frame = +1
Query: 208 KKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEE 387
KK +K KS K PPGSGDGQKW+TLEHNGVIFP PY+PHG+KMLYNG+PV LTPE+E
Sbjct: 332 KKEMKKIKGSKSAKGPPGSGDGQKWSTLEHNGVIFPSPYKPHGVKMLYNGQPVDLTPEKE 391
Query: 388 EVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKK 567
EVAT FAVMK+T+Y TKPKF++NF +DW+ ILG HVI+KFELCDFTPIYEWHL+EKEKK
Sbjct: 392 EVATMFAVMKDTEYETKPKFIDNFMNDWRVILGKNHVIKKFELCDFTPIYEWHLKEKEKK 451
Query: 568 KQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 747
KQMS +KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 452 KQMSAEEKKALKEEKAKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 511
Query: 748 IFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSA 927
IFP+DITIN+G++APIPEC + G RWKEI+HDNTVTWLA+WNDPINPKE KYVFLAASS+
Sbjct: 512 IFPKDITINIGKNAPIPECPISGQRWKEIKHDNTVTWLAFWNDPINPKELKYVFLAASSS 571
Query: 928 LKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEKD 1107
LKG SDKEKYEKAR+LK+YI+ IR+TY+ +F SKD K+Q A+ATYLID+LALRAGNEKD
Sbjct: 572 LKGQSDKEKYEKARLLKDYIDSIRETYTKHFNSKDIMKRQTAIATYLIDRLALRAGNEKD 631
Query: 1108 DDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKRD 1287
DDEADTVGCCTLKVENV L+ SS+QFDFLGKDSIRYFNTV V P VYKAIG+F+ K++
Sbjct: 632 DDEADTVGCCTLKVENVTLLPLSSLQFDFLGKDSIRYFNTVEVLPPVYKAIGDFRSGKKE 691
Query: 1288 SDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLLQETEG 1428
DDLFD+LDTSKLN HLKELMPGLTAKVFRTYNAS TLDRLLQ+T G
Sbjct: 692 GDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASETLDRLLQDTTG 738
>ref|XP_001773330.1| predicted protein [Physcomitrella patens] gi|162675372|gb|EDQ61868.1|
predicted protein [Physcomitrella patens]
Length = 632
Score = 632 bits (1631), Expect = e-179
Identities = 306/475 (64%), Positives = 357/475 (75%)
Frame = +1
Query: 4 DSDDEDDVPIAQRMKNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 183
D D++DD+P+AQRM ++
Sbjct: 6 DDDEDDDIPLAQRMSSSTSIIKKVVQQKAKASSSTGSTAIAARKLLEKKKAKRLQLQ--- 62
Query: 184 XXXXQKLLKKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKP 363
+ KK+ + KS+K+ P SGDG KWTTLEHNGVIFPPPY+PHG+KMLY+GKP
Sbjct: 63 ----MMVTKKKVITKTTTKSKKVEPVSGDGVKWTTLEHNGVIFPPPYEPHGVKMLYDGKP 118
Query: 364 VVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEW 543
V LTP +EE+AT FAVM ETDYA K +F++NFW DWK LG HVI+KFELCDFTPI++W
Sbjct: 119 VDLTPAQEEIATMFAVMLETDYAKKERFIKNFWDDWKPYLGKNHVIKKFELCDFTPIFDW 178
Query: 544 HLQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 723
H +EKE+KK MST +KYMWA+VDGVKEKVGNFRVEPPGLFRGRG+HP
Sbjct: 179 HAREKERKKSMSTEEKKRLKEEKLAVEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGDHP 238
Query: 724 KMGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKY 903
KMGKLK RI P DI IN+G+DA +PEC +PG RWKEIRHDNTVTWLAYW DPIN KEFKY
Sbjct: 239 KMGKLKTRILPHDIVINIGKDAAVPECPIPGQRWKEIRHDNTVTWLAYWKDPINDKEFKY 298
Query: 904 VFLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLA 1083
VFLAASS+LKG SD +KYEKARMLK+YI+DIR+TY+ +F S D TK+QIAVATYLID+LA
Sbjct: 299 VFLAASSSLKGQSDMQKYEKARMLKDYIDDIRRTYTHDFSSSDPTKQQIAVATYLIDRLA 358
Query: 1084 LRAGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIG 1263
LRAGNEKD+DEADTVGCC+LKVE+V LV P S+QFDFLGKDSIRYFNTV V VYKAIG
Sbjct: 359 LRAGNEKDEDEADTVGCCSLKVEHVTLVAPKSLQFDFLGKDSIRYFNTVEVDERVYKAIG 418
Query: 1264 EFKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLLQETEG 1428
+FKK K++ DDLF+ LDT+KLN HLK +MP LTAKVFRTYNASITLD LLQ+T G
Sbjct: 419 QFKKGKKEGDDLFERLDTTKLNLHLKGIMPSLTAKVFRTYNASITLDNLLQDTTG 473
>ref|XP_002300344.1| DNA topoisomerase family protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| DNA topoisomerase family
protein [Populus trichocarpa]
Length = 877
Score = 629 bits (1621), Expect = e-177
Identities = 302/414 (72%), Positives = 345/414 (83%), Gaps = 2/414 (0%)
Frame = +1
Query: 208 KKRGTSLKNVKSQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEE 384
KK+ + K KS K+ PGS DGQK WTTL HNGVIFPPPY+PHG+K+LY GKP+ LTPE+
Sbjct: 310 KKQMKNSKYSKSTKVQPGSSDGQKKWTTLVHNGVIFPPPYKPHGVKILYKGKPIDLTPEQ 369
Query: 385 EEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEK 564
EEVAT FAVMK+TDY KP+F +NFW+DW+++LG HVIQK + CDF PIYEWH QEKEK
Sbjct: 370 EEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNHVIQKLDDCDFNPIYEWHQQEKEK 429
Query: 565 KKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKK 744
KKQMST +KYMWAIV+GVKEKVGNFRVEPPGLFRGRGEHPKMGKLK
Sbjct: 430 KKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKS 489
Query: 745 RIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASS 924
RI P DITIN+G+DAPIPEC +PG RWKE++HDNTVTWLA+WNDPINPKEFKYVFLAASS
Sbjct: 490 RIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASS 549
Query: 925 ALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEK 1104
+LKG SDKEKYEKAR LK+YI +IR Y+ +F SKD TK+QIAVATYLID+LALRAGNEK
Sbjct: 550 SLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVATYLIDKLALRAGNEK 609
Query: 1105 DDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKR 1284
DDDEADTVGCCTLKV NV + P+ ++FDFLGKDSIRY NTV V+ VYKAIG F+ K+
Sbjct: 610 DDDEADTVGCCTLKVANVECIPPNKLKFDFLGKDSIRYENTVEVELPVYKAIGHFQVAKK 669
Query: 1285 DSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLD-RLLQETEGVDIPQ 1443
+DDLFD LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +ETE D+ +
Sbjct: 670 QTDDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDVAE 723
>ref|NP_001157806.1| topoisomerase I [Zea mays] gi|240065169|gb|ACS44671.1| DNA
topoisomerase I [Zea mays]
Length = 904
Score = 628 bits (1619), Expect = e-177
Identities = 293/413 (70%), Positives = 347/413 (84%), Gaps = 6/413 (1%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
K +K +G KN+K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGK
Sbjct: 329 KKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGK 388
Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
PV LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG H+I+ FELCDFTPIYE
Sbjct: 389 PVDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 448
Query: 541 WHLQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 720
WHL+EKE+KKQM+T +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEH
Sbjct: 449 WHLREKERKKQMTTEEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEH 508
Query: 721 PKMGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFK 900
PKMGKLK+RI P DITIN+G+ AP+PEC +PG WKE++HDNTVTWLA+WNDPINPK+FK
Sbjct: 509 PKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFK 568
Query: 901 YVFLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQL 1080
YVFLAASS+LKG SDKEKYEK+R LK +I+ IR+ Y+ +F +KD T++QIAVATYLID+L
Sbjct: 569 YVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKL 628
Query: 1081 ALRAGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAI 1260
ALRAGNEKDDDEADTVGCCTLKV+NV + P+ IQFDFLGKDSIRYFNTV V+ VYKAI
Sbjct: 629 ALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAI 688
Query: 1261 GEFKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLLQE 1419
F+ K+ DLFD++DTS+LN HLK+LMPGLTAKVFRTYNASITLD +L E
Sbjct: 689 EGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHE 741
>gb|AFW61219.1| DNA topoisomerase I [Zea mays]
Length = 602
Score = 627 bits (1618), Expect = e-177
Identities = 292/413 (70%), Positives = 347/413 (84%), Gaps = 6/413 (1%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
K +K +G KN+K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGK
Sbjct: 27 KKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGK 86
Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
P+ LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG H+I+ FELCDFTPIYE
Sbjct: 87 PIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 146
Query: 541 WHLQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 720
WHL+EKE+KKQM+T +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEH
Sbjct: 147 WHLREKERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEH 206
Query: 721 PKMGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFK 900
PKMGKLK+RI P DITIN+G+ AP+PEC +PG WKE++HDNTVTWLA+WNDPINPK+FK
Sbjct: 207 PKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFK 266
Query: 901 YVFLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQL 1080
YVFLAASS+LKG SDKEKYEK+R LK +I+ IR+ Y+ +F +KD T++QIAVATYLID+L
Sbjct: 267 YVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKL 326
Query: 1081 ALRAGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAI 1260
ALRAGNEKDDDEADTVGCCTLKV+NV + P+ IQFDFLGKDSIRYFNTV V+ VYKAI
Sbjct: 327 ALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAI 386
Query: 1261 GEFKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLLQE 1419
F+ K+ DLFD++DTS+LN HLK+LMPGLTAKVFRTYNASITLD +L E
Sbjct: 387 EGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHE 439
>ref|XP_006659124.1| PREDICTED: DNA topoisomerase 1-like [Oryza brachyantha]
Length = 911
Score = 627 bits (1617), Expect = e-177
Identities = 295/397 (74%), Positives = 345/397 (86%), Gaps = 1/397 (0%)
Frame = +1
Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
K+ K+PPGSG GQKWTTL HNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT F+VMK
Sbjct: 355 KTMKVPPGSGGGQKWTTLVHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFSVMK 414
Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMSTXXXXX 597
+TDYA+K F++NF+ DW++ILG H+I+KFELCDFTPIYEWHL+EKEKKKQM++
Sbjct: 415 DTDYASKQTFIDNFFTDWRKILGKNHIIKKFELCDFTPIYEWHLREKEKKKQMTSEEKKA 474
Query: 598 XXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIFPEDITINV 777
+KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITIN+
Sbjct: 475 VKEEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIQPSDITINI 534
Query: 778 GRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKY 957
G+ APIPEC +PG WKE++HDNTVTWLA+WNDPI+ K+FKYVFLAASSALKG SDKEKY
Sbjct: 535 GKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKY 594
Query: 958 EKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEKDDDEADTVGCC 1137
EK+R LK++I IR TY+ +F SKDKTKKQIAVATYLID+LALRAGNEKDDDEA+TVGCC
Sbjct: 595 EKSRKLKHHIHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALRAGNEKDDDEAETVGCC 654
Query: 1138 TLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKRDSDDLFDELDT 1317
TLKV+NV V P+++QFDFLGKDSIRYFNTV V+ VYKAI EF+ K+ DDLFD+LDT
Sbjct: 655 TLKVDNVTCVPPNNLQFDFLGKDSIRYFNTVEVELPVYKAIEEFRAGKKPGDDLFDKLDT 714
Query: 1318 SKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETE 1425
++LN HLK+LMPGLTAKVFRTYNASITLD +L +ETE
Sbjct: 715 TRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETE 751
>ref|XP_004972822.1| PREDICTED: DNA topoisomerase 1-like isoform X3 [Setaria italica]
Length = 903
Score = 627 bits (1616), Expect = e-177
Identities = 295/397 (74%), Positives = 341/397 (85%), Gaps = 1/397 (0%)
Frame = +1
Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT FAVMK
Sbjct: 347 KTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 406
Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMSTXXXXX 597
+TDYA KP F+ENF+ DW+ +LG HVI+KFELCDFTPIYEWHL+EKEKKKQM+T
Sbjct: 407 DTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKA 466
Query: 598 XXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIFPEDITINV 777
+KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITIN+
Sbjct: 467 LREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINI 526
Query: 778 GRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKY 957
G DAP+PEC +PG RWKE++HDNTVTWLA+WNDPI+ K+FKYVFLAASS+LKG SDKEKY
Sbjct: 527 GEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKY 586
Query: 958 EKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEKDDDEADTVGCC 1137
EK+R LK YI+DIR Y+ +F SKD K+QIAVATYLID+LALRAGNEKD+DEADTVGCC
Sbjct: 587 EKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKDEDEADTVGCC 646
Query: 1138 TLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKRDSDDLFDELDT 1317
TLKV+NV + P+ IQFDFLGKDSIRYFNTV V+ VYKAI F+ K+ DLFD+LDT
Sbjct: 647 TLKVDNVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGKDLFDQLDT 706
Query: 1318 SKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETE 1425
++LN HLK+LMPGLTAKVFRTYNASITLD +L +ETE
Sbjct: 707 TRLNAHLKDLMPGLTAKVFRTYNASITLDGILHKETE 743
>ref|XP_004972820.1| PREDICTED: DNA topoisomerase 1-like isoform X1 [Setaria italica]
Length = 932
Score = 627 bits (1616), Expect = e-177
Identities = 295/397 (74%), Positives = 341/397 (85%), Gaps = 1/397 (0%)
Frame = +1
Query: 238 KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNG+PV LTPE+EEVAT FAVMK
Sbjct: 347 KTMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGQPVDLTPEQEEVATMFAVMK 406
Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMSTXXXXX 597
+TDYA KP F+ENF+ DW+ +LG HVI+KFELCDFTPIYEWHL+EKEKKKQM+T
Sbjct: 407 DTDYAGKPTFIENFFTDWRTLLGKNHVIKKFELCDFTPIYEWHLREKEKKKQMTTEEKKA 466
Query: 598 XXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIFPEDITINV 777
+KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+RI P DITIN+
Sbjct: 467 LREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINI 526
Query: 778 GRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKY 957
G DAP+PEC +PG RWKE++HDNTVTWLA+WNDPI+ K+FKYVFLAASS+LKG SDKEKY
Sbjct: 527 GEDAPVPECPIPGERWKEVKHDNTVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKY 586
Query: 958 EKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEKDDDEADTVGCC 1137
EK+R LK YI+DIR Y+ +F SKD K+QIAVATYLID+LALRAGNEKD+DEADTVGCC
Sbjct: 587 EKSRKLKGYIQDIRDNYTKDFRSKDVAKRQIAVATYLIDKLALRAGNEKDEDEADTVGCC 646
Query: 1138 TLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKRDSDDLFDELDT 1317
TLKV+NV + P+ IQFDFLGKDSIRYFNTV V+ VYKAI F+ K+ DLFD+LDT
Sbjct: 647 TLKVDNVTCLPPNKIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGKDLFDQLDT 706
Query: 1318 SKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETE 1425
++LN HLK+LMPGLTAKVFRTYNASITLD +L +ETE
Sbjct: 707 TRLNAHLKDLMPGLTAKVFRTYNASITLDGILHKETE 743
>ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I,
putative [Ricinus communis]
Length = 891
Score = 627 bits (1616), Expect = e-177
Identities = 308/422 (72%), Positives = 349/422 (82%), Gaps = 6/422 (1%)
Frame = +1
Query: 196 QKLLKKRGTSLKNVK---SQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGKP 363
+K +KK +KN K S K+ P S DGQK WTTL HNGVIFPPPY+PHGIK+LY G+P
Sbjct: 316 KKPIKKNKKQMKNTKYSKSTKVQPSSTDGQKKWTTLIHNGVIFPPPYKPHGIKILYKGRP 375
Query: 364 VVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEW 543
V L PE+EEVAT FAVMK+TDY KPKF+ENFW+DW+++LG HVIQK E CDFTPIYEW
Sbjct: 376 VDLAPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKLLGRNHVIQKLEDCDFTPIYEW 435
Query: 544 HLQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHP 723
H +EKEKKKQMST +KYMWAIVDGVKEKVGNFRVEPP LFRGRGEHP
Sbjct: 436 HEREKEKKKQMSTEEKKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEPPALFRGRGEHP 495
Query: 724 KMGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKY 903
KMGKLKKRI P DITIN+G+DAPIPEC +PG WKE++HDNTVTWLA+WNDPINPKEFKY
Sbjct: 496 KMGKLKKRIQPSDITINIGKDAPIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKY 555
Query: 904 VFLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLA 1083
VFLAASS+LKG SDKEKYEKAR LK+YI +IR Y + SKD TKKQIAVATYLID+LA
Sbjct: 556 VFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYQKDLRSKDITKKQIAVATYLIDKLA 615
Query: 1084 LRAGNEKDDDEADTVGCCTLKVENVALVEPS-SIQFDFLGKDSIRYFNTVVVKPEVYKAI 1260
LRAGNEKDDDEADTVGCCTLKV NV + S +++FDFLGKDSIRY NTV VKPEVY+AI
Sbjct: 616 LRAGNEKDDDEADTVGCCTLKVANVECIPGSFNLKFDFLGKDSIRYENTVEVKPEVYEAI 675
Query: 1261 GEFKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLD-RLLQETEGVDI 1437
G F+K K+ +DDLFD+LDT+KLN HLKELMPGLTAKVFRTYNASITLD +L +ETE D+
Sbjct: 676 GTFQKGKKQTDDLFDKLDTTKLNAHLKELMPGLTAKVFRTYNASITLDEKLYEETEDGDV 735
Query: 1438 PQ 1443
+
Sbjct: 736 AE 737
>gb|ACL52396.1| unknown [Zea mays]
Length = 574
Score = 626 bits (1615), Expect = e-177
Identities = 291/411 (70%), Positives = 346/411 (84%), Gaps = 6/411 (1%)
Frame = +1
Query: 205 LKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPV 366
+K +G KN+K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGKP+
Sbjct: 1 MKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGKPI 60
Query: 367 VLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWH 546
LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG H+I+ FELCDFTPIYEWH
Sbjct: 61 DLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYEWH 120
Query: 547 LQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK 726
L+EKE+KKQM+T +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEHPK
Sbjct: 121 LREKERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPK 180
Query: 727 MGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYV 906
MGKLK+RI P DITIN+G+ AP+PEC +PG WKE++HDNTVTWLA+WNDPINPK+FKYV
Sbjct: 181 MGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFKYV 240
Query: 907 FLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLAL 1086
FLAASS+LKG SDKEKYEK+R LK +I+ IR+ Y+ +F +KD T++QIAVATYLID+LAL
Sbjct: 241 FLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKLAL 300
Query: 1087 RAGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGE 1266
RAGNEKDDDEADTVGCCTLKV+NV + P+ IQFDFLGKDSIRYFNTV V+ VYKAI
Sbjct: 301 RAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAIEG 360
Query: 1267 FKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLLQE 1419
F+ K+ DLFD++DTS+LN HLK+LMPGLTAKVFRTYNASITLD +L E
Sbjct: 361 FRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHE 411
>gb|AFW61218.1| hypothetical protein ZEAMMB73_011101 [Zea mays]
Length = 438
Score = 624 bits (1610), Expect = e-176
Identities = 290/411 (70%), Positives = 346/411 (84%), Gaps = 6/411 (1%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQ------KLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGK 360
K +K +G KN+K+ K+PPGSG G+KWTTLEHNGVIFPPPY+PHG+KMLYNGK
Sbjct: 27 KKMKGKGKLKKNMKNSQFSKIMKVPPGSGGGKKWTTLEHNGVIFPPPYKPHGVKMLYNGK 86
Query: 361 PVVLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYE 540
P+ LTPE+EEVAT FAVMK+TDYA KP F++NF+ DW+++LG H+I+ FELCDFTPIYE
Sbjct: 87 PIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNHIIKNFELCDFTPIYE 146
Query: 541 WHLQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEH 720
WHL+EKE+KKQM+T +KYMWA+VDGVKEKVGNFRVEPPGLFRGRGEH
Sbjct: 147 WHLREKERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEH 206
Query: 721 PKMGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFK 900
PKMGKLK+RI P DITIN+G+ AP+PEC +PG WKE++HDNTVTWLA+WNDPINPK+FK
Sbjct: 207 PKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWNDPINPKDFK 266
Query: 901 YVFLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQL 1080
YVFLAASS+LKG SDKEKYEK+R LK +I+ IR+ Y+ +F +KD T++QIAVATYLID+L
Sbjct: 267 YVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLIDKL 326
Query: 1081 ALRAGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAI 1260
ALRAGNEKDDDEADTVGCCTLKV+NV + P+ IQFDFLGKDSIRYFNTV V+ VYKAI
Sbjct: 327 ALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVYKAI 386
Query: 1261 GEFKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL 1413
F+ K+ DLFD++DTS+LN HLK+LMPGLTAKVFRTYNASITLD ++
Sbjct: 387 EGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGIV 437
>ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
gi|296082698|emb|CBI21703.3| unnamed protein product
[Vitis vinifera]
Length = 857
Score = 624 bits (1609), Expect = e-176
Identities = 304/413 (73%), Positives = 343/413 (83%), Gaps = 1/413 (0%)
Frame = +1
Query: 208 KKRGTSLKNVKSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEE 387
KK + K KS K+PP SG+GQKWTTL HNGVIFPPPY+PHG+KMLY GKPV LTPE+E
Sbjct: 292 KKMEKNSKYSKSTKVPPSSGEGQKWTTLVHNGVIFPPPYKPHGVKMLYKGKPVDLTPEQE 351
Query: 388 EVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKK 567
EVAT FAVM +TDY K KF ENF DW++ILG HVIQ+ + CDFTPIYEWH +EKEKK
Sbjct: 352 EVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNHVIQRLDDCDFTPIYEWHQEEKEKK 411
Query: 568 KQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKR 747
KQMST +KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLK+R
Sbjct: 412 KQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRR 471
Query: 748 IFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSA 927
I P DITIN+G+++ IPEC +PG WKE++HDNTVTWLA+WNDPINPKEFKYVFLAASS+
Sbjct: 472 IHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINPKEFKYVFLAASSS 531
Query: 928 LKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEKD 1107
LKG SDKEKYEKAR LKNYI+DIR TY+ +F SKD TK+QIAVATYLID+LALRAGNEKD
Sbjct: 532 LKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLIDKLALRAGNEKD 591
Query: 1108 DDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKRD 1287
DDEADTVGCCTLKVENV P+S+QFDFLGKDSIRY TV V+ VYKAI +F+ K
Sbjct: 592 DDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQFRVGKSG 651
Query: 1288 SDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVDIPQ 1443
SDDLFD+LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L ++T+ D+ Q
Sbjct: 652 SDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKEGDVAQ 704
>dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 624 bits (1608), Expect = e-176
Identities = 306/420 (72%), Positives = 344/420 (81%), Gaps = 4/420 (0%)
Frame = +1
Query: 196 QKLLKKRGTSLKNVK---SQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPV 366
+K+ KK +KN K S K+PP SG+G+KW LEHNGVIFPPPY+PHGIKMLY GKPV
Sbjct: 335 KKVNKKSKKVMKNSKYSKSSKVPPSSGEGKKWNKLEHNGVIFPPPYKPHGIKMLYKGKPV 394
Query: 367 VLTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWH 546
LTPE+EEVAT FAVM +TDY KP+F ENF+ DWK+ILG HVIQ E CDF+PIYEWH
Sbjct: 395 DLTPEQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNHVIQNLENCDFSPIYEWH 454
Query: 547 LQEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPK 726
EKEKKKQM+T +KYMWA VDG KEKVGNFRVEPPGLFRGRGEHPK
Sbjct: 455 QSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRGRGEHPK 514
Query: 727 MGKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYV 906
MGKLKKRI P DITIN+G+DAPIPEC +PG RWKE+RHDNTVTWLA+WNDPINPKEFKYV
Sbjct: 515 MGKLKKRIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPINPKEFKYV 574
Query: 907 FLAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLAL 1086
FLAASS LKGLSDKEKYEKAR+LK+YI+ IR Y+ +F SKD TKKQIAVATYLID+LAL
Sbjct: 575 FLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYLIDKLAL 634
Query: 1087 RAGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGE 1266
RAGNEKDDDEADTVGCCTLKVENV V P+ ++FDFLGKDSIRY N V V+ V+KAI +
Sbjct: 635 RAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVFKAIQQ 694
Query: 1267 FKKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVDIPQ 1443
F+ K S DLFD LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +ET+G D+ +
Sbjct: 695 FRSGKEGSSDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGGDVAE 754
>ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I
[Oryza sativa Japonica Group]
gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa
Japonica Group] gi|222639933|gb|EEE68065.1| hypothetical
protein OsJ_26075 [Oryza sativa Japonica Group]
Length = 916
Score = 623 bits (1606), Expect = e-176
Identities = 298/413 (72%), Positives = 350/413 (84%), Gaps = 4/413 (0%)
Frame = +1
Query: 199 KLLKKRGTSLKNV---KSQKLPPGSGDGQKWTTLEHNGVIFPPPYQPHGIKMLYNGKPVV 369
K+ K ++KN K+ K+PPGSG GQKWTTL H+GVIFPPPY+PHG+KMLYNG+PV
Sbjct: 344 KMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVHSGVIFPPPYKPHGVKMLYNGQPVD 403
Query: 370 LTPEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHL 549
LTPE+EEVAT FAVMK+TDYA+K F++NF+ DW++ILG HVI+KFELCDFTPIYEWHL
Sbjct: 404 LTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNHVIKKFELCDFTPIYEWHL 463
Query: 550 QEKEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 729
+EKEKKKQM++ +KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM
Sbjct: 464 REKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKM 523
Query: 730 GKLKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVF 909
GKLK+RI P DITIN+G+ APIPEC +PG WKE++HDNTVTWLA+WNDPI+ K+FKYVF
Sbjct: 524 GKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQKDFKYVF 583
Query: 910 LAASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALR 1089
LAASSALKG SDKEKYEK+R LK+++ IR TY+ +F SKDKTKKQIAVATYLID+LALR
Sbjct: 584 LAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLIDKLALR 643
Query: 1090 AGNEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEF 1269
AGNEKD+DEA+TVGCCTLKV+NV V P+ +QFDFLGKDSIRYFNTV V+ VYKAI EF
Sbjct: 644 AGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVYKAIEEF 703
Query: 1270 KKEKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETE 1425
+ K+ DLFD+LDT++LN HLK+LMPGLTAKVFRTYNASITLD +L +ETE
Sbjct: 704 RAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETE 756
>gb|EOY12192.1| DNA topoisomerase I alpha isoform 4, partial [Theobroma cacao]
Length = 733
Score = 622 bits (1604), Expect = e-175
Identities = 299/417 (71%), Positives = 347/417 (83%), Gaps = 2/417 (0%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLT 375
K KK S K +KS K+PP SGDGQK W+TL HNGVIFP PY PHG+KMLY+G+PV LT
Sbjct: 207 KKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLT 266
Query: 376 PEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQE 555
PE+EEVAT FAVMK+TDY +K +F +NFW DW ++LG H I+ + CDFTPIYEWHLQE
Sbjct: 267 PEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQE 326
Query: 556 KEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 735
KEKKKQMS+ +K+MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK
Sbjct: 327 KEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 386
Query: 736 LKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLA 915
LK+RI P DITIN+G+DAPIPEC +PG RWK+I+HDNTVTWLA+WNDPINPKEFKYVFLA
Sbjct: 387 LKRRIRPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWNDPINPKEFKYVFLA 446
Query: 916 ASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAG 1095
ASS+LKG SDKEKYEKARMLK+YI++IR Y+ +F +KD K+QIAVATYLID+LALRAG
Sbjct: 447 ASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAVATYLIDKLALRAG 506
Query: 1096 NEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKK 1275
NEKDDDEADTVGCCTLKV NV + P+ ++FDFLGKDSI+Y NTV V+ VYKAIG+F+
Sbjct: 507 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT 566
Query: 1276 EKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVDIPQ 1443
K SDDLFD+LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +ET+ D+ +
Sbjct: 567 GKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKETKDGDVAE 623
>gb|EOY12191.1| DNA topoisomerase I alpha isoform 3 [Theobroma cacao]
gi|508720296|gb|EOY12193.1| DNA topoisomerase I alpha
isoform 3 [Theobroma cacao]
Length = 836
Score = 622 bits (1604), Expect = e-175
Identities = 299/417 (71%), Positives = 347/417 (83%), Gaps = 2/417 (0%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLT 375
K KK S K +KS K+PP SGDGQK W+TL HNGVIFP PY PHG+KMLY+G+PV LT
Sbjct: 334 KKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLT 393
Query: 376 PEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQE 555
PE+EEVAT FAVMK+TDY +K +F +NFW DW ++LG H I+ + CDFTPIYEWHLQE
Sbjct: 394 PEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQE 453
Query: 556 KEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 735
KEKKKQMS+ +K+MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK
Sbjct: 454 KEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 513
Query: 736 LKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLA 915
LK+RI P DITIN+G+DAPIPEC +PG RWK+I+HDNTVTWLA+WNDPINPKEFKYVFLA
Sbjct: 514 LKRRIRPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWNDPINPKEFKYVFLA 573
Query: 916 ASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAG 1095
ASS+LKG SDKEKYEKARMLK+YI++IR Y+ +F +KD K+QIAVATYLID+LALRAG
Sbjct: 574 ASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAVATYLIDKLALRAG 633
Query: 1096 NEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKK 1275
NEKDDDEADTVGCCTLKV NV + P+ ++FDFLGKDSI+Y NTV V+ VYKAIG+F+
Sbjct: 634 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT 693
Query: 1276 EKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVDIPQ 1443
K SDDLFD+LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +ET+ D+ +
Sbjct: 694 GKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKETKDGDVAE 750
>gb|EOY12189.1| DNA topoisomerase I alpha isoform 1 [Theobroma cacao]
gi|508720293|gb|EOY12190.1| DNA topoisomerase I alpha
isoform 1 [Theobroma cacao]
Length = 904
Score = 622 bits (1604), Expect = e-175
Identities = 299/417 (71%), Positives = 347/417 (83%), Gaps = 2/417 (0%)
Frame = +1
Query: 199 KLLKKRGTSLKNVKSQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLT 375
K KK S K +KS K+PP SGDGQK W+TL HNGVIFP PY PHG+KMLY+G+PV LT
Sbjct: 334 KKSKKEMKSSKYIKSTKVPPSSGDGQKKWSTLVHNGVIFPSPYTPHGVKMLYDGRPVDLT 393
Query: 376 PEEEEVATFFAVMKETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQE 555
PE+EEVAT FAVMK+TDY +K +F +NFW DW ++LG H I+ + CDFTPIYEWHLQE
Sbjct: 394 PEQEEVATMFAVMKDTDYMSKTQFKKNFWEDWSKLLGKNHTIKDLDRCDFTPIYEWHLQE 453
Query: 556 KEKKKQMSTXXXXXXXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 735
KEKKKQMS+ +K+MWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK
Sbjct: 454 KEKKKQMSSEEKKALKEEKLKQEEKFMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGK 513
Query: 736 LKKRIFPEDITINVGRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLA 915
LK+RI P DITIN+G+DAPIPEC +PG RWK+I+HDNTVTWLA+WNDPINPKEFKYVFLA
Sbjct: 514 LKRRIRPSDITINIGKDAPIPECPIPGERWKDIKHDNTVTWLAFWNDPINPKEFKYVFLA 573
Query: 916 ASSALKGLSDKEKYEKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAG 1095
ASS+LKG SDKEKYEKARMLK+YI++IR Y+ +F +KD K+QIAVATYLID+LALRAG
Sbjct: 574 ASSSLKGQSDKEKYEKARMLKDYIKNIRAAYTKDFTTKDVMKRQIAVATYLIDKLALRAG 633
Query: 1096 NEKDDDEADTVGCCTLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKK 1275
NEKDDDEADTVGCCTLKV NV + P+ ++FDFLGKDSI+Y NTV V+ VYKAIG+F+
Sbjct: 634 NEKDDDEADTVGCCTLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQT 693
Query: 1276 EKRDSDDLFDELDTSKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVDIPQ 1443
K SDDLFD+LDTSKLN HLKELMPGLTAKVFRTYNASITLD +L +ET+ D+ +
Sbjct: 694 GKSKSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKETKDGDVAE 750
>ref|XP_006279572.1| hypothetical protein CARUB_v10025842mg [Capsella rubella]
gi|482548276|gb|EOA12470.1| hypothetical protein
CARUB_v10025842mg [Capsella rubella]
Length = 923
Score = 622 bits (1603), Expect = e-175
Identities = 301/403 (74%), Positives = 342/403 (84%), Gaps = 2/403 (0%)
Frame = +1
Query: 241 SQKLPPGSGDGQK-WTTLEHNGVIFPPPYQPHGIKMLYNGKPVVLTPEEEEVATFFAVMK 417
S K P SGDGQK WTTL HNGVIFPPPY+PHGIK+LY GKPV LT E+EEVAT FAVM+
Sbjct: 362 SSKSLPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDLTTEQEEVATMFAVMR 421
Query: 418 ETDYATKPKFVENFWHDWKRILGPKHVIQKFELCDFTPIYEWHLQEKEKKKQMSTXXXXX 597
ETDY KP+F ENFW+DW+R+LG KHVIQK + CDFTPIYEWHL+EKEKKKQMS+
Sbjct: 422 ETDYYNKPQFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLEEKEKKKQMSSEEKKA 481
Query: 598 XXXXXXXXXDKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIFPEDITINV 777
+KYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRI P +IT+N+
Sbjct: 482 VKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCEITLNI 541
Query: 778 GRDAPIPECTMPGHRWKEIRHDNTVTWLAYWNDPINPKEFKYVFLAASSALKGLSDKEKY 957
G+DAPIPEC + G WKE++HDNTVTWLA+WNDPINP+EFKYVFLAASSALKGLSDKEKY
Sbjct: 542 GKDAPIPECPITGESWKEVKHDNTVTWLAFWNDPINPREFKYVFLAASSALKGLSDKEKY 601
Query: 958 EKARMLKNYIEDIRKTYSMNFGSKDKTKKQIAVATYLIDQLALRAGNEKDDDEADTVGCC 1137
EKAR L ++I++IR TY+ NF +KD TK+QIAVATYLID+LALRAGNEKDDDEADTVGCC
Sbjct: 602 EKARNLSDHIDNIRTTYTKNFTAKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCC 661
Query: 1138 TLKVENVALVEPSSIQFDFLGKDSIRYFNTVVVKPEVYKAIGEFKKEKRDSDDLFDELDT 1317
TLKV NV + P+ I+FDFLGKDSI+Y NTV V+P VYKAIG+F+ K +DDLFD LDT
Sbjct: 662 TLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDMLDT 721
Query: 1318 SKLNTHLKELMPGLTAKVFRTYNASITLDRLL-QETEGVDIPQ 1443
SKLN HLKEL+PGLTAKVFRTYNASITLD +L QET+ D+ Q
Sbjct: 722 SKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVNQ 764