BLASTX nr result
ID: Ephedra27_contig00000876
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra27_contig00000876
(885 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS74427.1| hypothetical protein M569_00327 [Genlisea aurea] 87 1e-14
gb|ACN41154.1| unknown [Picea sitchensis] 83 2e-13
gb|ACN39907.1| unknown [Picea sitchensis] 83 2e-13
ref|XP_006358946.1| PREDICTED: heterogeneous nuclear ribonucleop... 82 3e-13
ref|XP_004251889.1| PREDICTED: heterogeneous nuclear ribonucleop... 82 3e-13
ref|XP_002300424.2| hypothetical protein POPTR_0001s38640g [Popu... 81 5e-13
ref|XP_004294103.1| PREDICTED: polyadenylate-binding protein 2-l... 79 3e-12
ref|XP_006359092.1| PREDICTED: heterogeneous nuclear ribonucleop... 78 5e-12
ref|XP_004510069.1| PREDICTED: heterogeneous nuclear ribonucleop... 77 9e-12
ref|XP_004231546.1| PREDICTED: polyadenylate-binding protein 4-l... 77 9e-12
gb|EXC18502.1| Uncharacterized RNA-binding protein [Morus notabi... 77 1e-11
dbj|BAK01483.1| predicted protein [Hordeum vulgare subsp. vulgare] 77 1e-11
dbj|BAJ91407.1| predicted protein [Hordeum vulgare subsp. vulgare] 77 1e-11
gb|EOY13201.1| RNA-binding family protein [Theobroma cacao] 76 1e-11
ref|XP_002522097.1| Heterogeneous nuclear ribonucleoprotein A1, ... 76 1e-11
ref|XP_006346705.1| PREDICTED: RNA-binding protein squid-like [S... 75 2e-11
ref|XP_004293936.1| PREDICTED: heterogeneous nuclear ribonucleop... 75 2e-11
ref|NP_188119.1| RNA recognition motif-containing protein [Arabi... 74 6e-11
ref|XP_004969158.1| PREDICTED: heterogeneous nuclear ribonucleop... 74 6e-11
gb|AFC89654.1| RBP42 [Elaeis guineensis] 74 6e-11
>gb|EPS74427.1| hypothetical protein M569_00327 [Genlisea aurea]
Length = 414
Score = 86.7 bits (213), Expect = 1e-14
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D+ E L +FS YGEIE GP G+DK +GK K +A+ ++K+++AAR L
Sbjct: 183 RKIYVSNVPYDMPSERLLQHFSMYGEIEEGPLGFDKATGK-SKGFALFVYKTVEAARASL 241
Query: 557 QFPLKDIQGHKISVSVA----KARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSM 390
P+K + GH++S +A +A+ G+ G T G G+ +G + V
Sbjct: 242 VDPIKKVDGHQLSCKLAVDGKRAKRTGDATGPTGFPGSNQGNGD--GIGRAMNDQYV--- 296
Query: 389 PPTGNFGGPYG-YSG 348
G GGPYG YSG
Sbjct: 297 -VAGGVGGPYGDYSG 310
>gb|ACN41154.1| unknown [Picea sitchensis]
Length = 446
Score = 82.8 bits (203), Expect = 2e-13
Identities = 51/134 (38%), Positives = 73/134 (54%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D+ + L FSQYGEIE GP G+DK SGK + +A+ IFKS+DA ++ L
Sbjct: 155 RKIYVGNVPMDMAADRLLSLFSQYGEIEEGPLGFDKQSGK-SRGFALFIFKSVDATKRAL 213
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
+ P+K I GH++ +A + G + GG + S + G N P V P
Sbjct: 214 EEPMKTIDGHQMFCKLAVEGQKPKPGGMS-----VPGGPDGSDMNGLNQPGNVVPSNPGM 268
Query: 377 NFGGPYGYSGSTPA 336
FGG G+ PA
Sbjct: 269 QFGG-MGHGFVNPA 281
>gb|ACN39907.1| unknown [Picea sitchensis]
Length = 536
Score = 82.8 bits (203), Expect = 2e-13
Identities = 49/145 (33%), Positives = 80/145 (55%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
RR+Y+ VP+D++P TLT +FS YG+IE GP G+D+ +GK K Y++I++++++AA + L
Sbjct: 241 RRIYVGNVPDDMKPATLTSFFSNYGDIEEGPGGFDRNTGK-SKGYSLILYRTIEAANRAL 299
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
+ P+K I GH++ +A G + V ++ EL G N S+
Sbjct: 300 EDPVKSIDGHQLFCKLA-----AEGLKQKGVTKQGQAVPELMDKGDANPA----SLNHVS 350
Query: 377 NFGGPYGYSGSTPASAGAVQSMLPT 303
+GG G+ PA +M PT
Sbjct: 351 QYGG-LGHGPVNPALIAHQNTMNPT 374
>ref|XP_006358946.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Solanum tuberosum]
Length = 446
Score = 81.6 bits (200), Expect = 3e-13
Identities = 48/130 (36%), Positives = 74/130 (56%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D++ E + +F YGEIE GP G+DK +GK K YA+ ++K+ +AA+ L
Sbjct: 167 RKIYVSNVPYDMQSERILQHFLMYGEIEEGPLGFDKATGK-SKGYALFVYKTAEAAQSSL 225
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
P+K+I GH+++ +A DGK + GG ++ Q G+ P M P G
Sbjct: 226 VDPVKNIDGHQLNCKLAI-------DGKKKPGVGGPGGAQV-QTDGHGDP-----MGP-G 271
Query: 377 NFGGPYGYSG 348
+G P GY G
Sbjct: 272 QYGAPSGYGG 281
>ref|XP_004251889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like [Solanum
lycopersicum]
Length = 440
Score = 81.6 bits (200), Expect = 3e-13
Identities = 48/130 (36%), Positives = 74/130 (56%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D++ E + +F YGEIE GP G+DK +GK K YA+ ++K+ +AA+ L
Sbjct: 167 RKIYVSNVPYDMQSERILQHFLMYGEIEEGPLGFDKATGK-SKGYALFVYKTAEAAQSSL 225
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
P+K+I GH+++ +A DGK + GG ++ Q G+ P M P G
Sbjct: 226 VDPVKNIDGHQLNCKLAI-------DGKKKPGVGGPGGAQV-QTDGHGDP-----MGP-G 271
Query: 377 NFGGPYGYSG 348
+G P GY G
Sbjct: 272 QYGAPSGYGG 281
>ref|XP_002300424.2| hypothetical protein POPTR_0001s38640g [Populus trichocarpa]
gi|550349194|gb|EEE85229.2| hypothetical protein
POPTR_0001s38640g [Populus trichocarpa]
Length = 376
Score = 81.3 bits (199), Expect = 5e-13
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 8/146 (5%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP ++ + L +F+QYGEIE GP G+DK +GK K +A+ ++K+ + A+ L
Sbjct: 175 RKIYVANVPYEMPSDKLLNHFAQYGEIEEGPLGFDKQTGK-SKGFALFVYKTAEGAQAAL 233
Query: 557 QFPLKDIQGHKISVSVA----KARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSM 390
P+K I+G +++ +A + R G G G Q + G LS GG +
Sbjct: 234 LEPVKMIEGRQLNCKLAIDGKRGRQPGGGQGPGQDGLQGQGVVGLSGTGGGS------YG 287
Query: 389 PPTGNFGGP----YGYSGSTPASAGA 324
PP G +GGP YG G A GA
Sbjct: 288 PPYGGYGGPGSTGYGGLGGGGAGVGA 313
>ref|XP_004294103.1| PREDICTED: polyadenylate-binding protein 2-like [Fragaria vesca
subsp. vesca]
Length = 434
Score = 78.6 bits (192), Expect = 3e-12
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 9/154 (5%)
Frame = -2
Query: 782 GGFHGEEKSTMGTVG---RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFK 612
GG G +++ V R++Y+ VP ++ + L +F+QYGE+E GP G+DK +GK
Sbjct: 154 GGGGGSTTASVNPVDVSLRKIYVANVPYEMAADKLLAHFAQYGEVEEGPLGFDKQTGKC- 212
Query: 611 KEYAIIIFKSLDAARKCLQFPLKDIQGHKISVSVA----KARNEGNGDGKTQVKEEKDGG 444
K YA+ ++K+ + A+K L P+K+I+G +++ A K + G DG +Q + G
Sbjct: 213 KGYALFVYKTPEGAQKALVDPIKNIEGRQLNCKFASDGKKPKMGGGADGGSQGQGPVGGP 272
Query: 443 GELSQLGGNNGPRVVWSMPPTGNFGGP--YGYSG 348
+ G G SMP G +GGP +GY G
Sbjct: 273 ---NAHGDGMGMAPPSSMP--GQYGGPGGFGYGG 301
>ref|XP_006359092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like [Solanum
tuberosum]
Length = 424
Score = 77.8 bits (190), Expect = 5e-12
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP +I E L +FS YGEIE GP G+DK +GK K +A ++K+ D AR L
Sbjct: 172 RKIYVGNVPFEISSEKLLNHFSMYGEIEEGPLGFDKQTGK-AKGFAFFVYKTEDGARASL 230
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
P+K ++GH++ +A N GK Q G + GG G V SMP +
Sbjct: 231 VDPVKTVEGHQVLCKLA----TDNKKGKPQNMGHGGAPGMNAGPGGMPGDDRVGSMPGS- 285
Query: 377 NFG------GPY-GYSG 348
N+G GPY G+SG
Sbjct: 286 NYGVPVSGLGPYSGFSG 302
>ref|XP_004510069.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
2-like [Cicer arietinum]
Length = 418
Score = 77.0 bits (188), Expect = 9e-12
Identities = 50/158 (31%), Positives = 78/158 (49%)
Frame = -2
Query: 779 GFHGEEKSTMGTVGRRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYA 600
G G ++ T R++Y+ V D+ + L +FS YGEIE GP G+DK +G+ K +A
Sbjct: 134 GNSGSNTNSTDTALRKIYVSNVTPDLAADKLLAHFSLYGEIEEGPLGFDKQTGR-SKGFA 192
Query: 599 IIIFKSLDAARKCLQFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGG 420
+ ++K+ + A+ L P+K+++G +++ +A DGK Q GG + Q G
Sbjct: 193 LFVYKTPEGAQAALLEPVKNVEGRQLNCKLAIT------DGKQQGVRGGGGGPDAVQGRG 246
Query: 419 NNGPRVVWSMPPTGNFGGPYGYSGSTPASAGAVQSMLP 306
N + P G G YG GS AG Q P
Sbjct: 247 NAHGNGIGMAPTAGPGSGQYG-MGSYGGYAGGHQGQPP 283
>ref|XP_004231546.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Solanum
lycopersicum] gi|460371445|ref|XP_004231547.1|
PREDICTED: polyadenylate-binding protein 4-like isoform
2 [Solanum lycopersicum]
gi|460371447|ref|XP_004231548.1| PREDICTED:
polyadenylate-binding protein 4-like isoform 3 [Solanum
lycopersicum] gi|460371449|ref|XP_004231549.1|
PREDICTED: polyadenylate-binding protein 4-like isoform
4 [Solanum lycopersicum]
Length = 424
Score = 77.0 bits (188), Expect = 9e-12
Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 7/137 (5%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP +I E L +FS YGEIE GP G+DK +GK K +A ++K+ D AR L
Sbjct: 172 RKIYVGNVPFEISSEKLLNHFSMYGEIEEGPLGFDKQTGK-AKGFAFFVYKTEDGARASL 230
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
P+K ++GH++ +A N GK Q G + L G G V SMP +
Sbjct: 231 VDPVKTVEGHQVLCKLA----TDNKKGKPQNMGHGGAPGMNAGLVGMPGDDRVGSMPGS- 285
Query: 377 NFG------GPY-GYSG 348
N+G GPY G+SG
Sbjct: 286 NYGVPVSGMGPYSGFSG 302
>gb|EXC18502.1| Uncharacterized RNA-binding protein [Morus notabilis]
Length = 416
Score = 76.6 bits (187), Expect = 1e-11
Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 4/134 (2%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D+ PE L +FS +GE+E GP G+DK +GK + YA+ ++K+ + AR L
Sbjct: 171 RKIYVANVPYDMTPEKLLAHFSLFGEVEEGPLGFDKQTGKC-RGYALFVYKTPEGARAAL 229
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGG-NNGPRVVWSMPPT 381
P+K I+G ++S +A DGK + G + + GG N P SMP
Sbjct: 230 VDPVKTIEGRQLSCKLAI-------DGKKGKQGAVQNGVQAAAPGGPGNAPPA--SMP-- 278
Query: 380 GNFGGPYG---YSG 348
G F GP G YSG
Sbjct: 279 GQFNGPGGIGSYSG 292
>dbj|BAK01483.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 76.6 bits (187), Expect = 1e-11
Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 13/158 (8%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++++ V DI P+ L +FS+YGEIE GP G DK +GK K +A+ ++++L+ A+K L
Sbjct: 269 RKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKATGK-PKGFALFVYRTLEGAKKAL 327
Query: 557 QFPLKDIQG---HKISVSVAKARNEGNGDGKTQVKEEKDGGG---ELSQLGGNNG----- 411
Q P K +G H N G G G T E K G L GN G
Sbjct: 328 QEPHKSFEGVVLHCQKAIDGPKPNRGGGHGATTTIERKGAAGYSASSRSLPGNVGAGYGM 387
Query: 410 --PRVVWSMPPTGNFGGPYGYSGSTPASAGAVQSMLPT 303
P + SMP G G G PA A+ + L T
Sbjct: 388 ASPASLSSMP-----GAVPGGPGMNPALGQALTAFLAT 420
>dbj|BAJ91407.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 76.6 bits (187), Expect = 1e-11
Identities = 55/158 (34%), Positives = 75/158 (47%), Gaps = 13/158 (8%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++++ V DI P+ L +FS+YGEIE GP G DK +GK K +A+ ++++L+ A+K L
Sbjct: 269 RKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKATGK-PKGFALFVYRTLEGAKKAL 327
Query: 557 QFPLKDIQG---HKISVSVAKARNEGNGDGKTQVKEEKDGGG---ELSQLGGNNG----- 411
Q P K +G H N G G G T E K G L GN G
Sbjct: 328 QEPHKSFEGVVLHCQKAIDGPKPNRGGGHGATTTIERKGAAGYSASSRSLPGNVGAGYGM 387
Query: 410 --PRVVWSMPPTGNFGGPYGYSGSTPASAGAVQSMLPT 303
P + SMP G G G PA A+ + L T
Sbjct: 388 ASPASLSSMP-----GAVPGGPGMNPALGQALTAFLAT 420
>gb|EOY13201.1| RNA-binding family protein [Theobroma cacao]
Length = 429
Score = 76.3 bits (186), Expect = 1e-11
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Frame = -2
Query: 779 GFHGEEKSTMGTVGRRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYA 600
G G + + R++Y+ VP D+ + L +F+QYGEIE GP G+DK +GK + +A
Sbjct: 154 GNSGTNNNPVDVHMRKIYVANVPYDMPADKLLGHFAQYGEIEEGPLGFDKQTGK-SRGFA 212
Query: 599 IIIFKSLDAARKCLQFPLKDIQGHKISVSVAKARNEG--NGDGKTQVKEEKDGGGELSQL 426
+ ++K+ D A+ L P+K+I G +++ +A +G DG Q G E+ +
Sbjct: 213 LFVYKTADGAQAALVEPVKNIDGRQMNCKLAIEGKKGKPGQDGMMQSGGGAPGNAEMG-I 271
Query: 425 GGNNGPRVVWSMPPTGNFGGPYGYSGSTPASAG 327
GG+ G P G GG GYSG G
Sbjct: 272 GGHGGGYGGPGGP--GGLGGYGGYSGGLQGPPG 302
>ref|XP_002522097.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis] gi|223538696|gb|EEF40297.1| Heterogeneous
nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 478
Score = 76.3 bits (186), Expect = 1e-11
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ V D+ P+ LT +FS++GEIE GP G DK++GK K + + ++KS+++A+K L
Sbjct: 238 RKIYISNVGADLDPQQLTSFFSKFGEIEEGPLGLDKLTGK-PKGFCLFVYKSVESAKKAL 296
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDG--------GGELSQLGGNNGPRV 402
+ P K+ +GH + A +G GK+Q +++ G G N P
Sbjct: 297 EEPHKNFEGHILHCQKAV---DGPKHGKSQQQQQHHNVQKSHFQRNGNAGGYSGRNVPGP 353
Query: 401 VWSMPPTGNFGGPYGYSGSTPASA 330
M P G GY G+ A A
Sbjct: 354 AHLMAPAAPPG--IGYQGAAGAPA 375
>ref|XP_006346705.1| PREDICTED: RNA-binding protein squid-like [Solanum tuberosum]
Length = 425
Score = 75.5 bits (184), Expect = 2e-11
Identities = 34/85 (40%), Positives = 56/85 (65%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP+D+ E L +F+++GEIESGP G+D +GK K YA+ ++K+++AA+KCL
Sbjct: 195 RKIYVSNVPKDVNSEKLRSFFAKFGEIESGPMGFDPSTGK-SKGYALFVYKTVEAAKKCL 253
Query: 557 QFPLKDIQGHKISVSVAKARNEGNG 483
+ P K +G ++ A G G
Sbjct: 254 EKPSKIFEGRQLHCKKAAEGKVGGG 278
>ref|XP_004293936.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A1 homolog
[Fragaria vesca subsp. vesca]
Length = 353
Score = 75.5 bits (184), Expect = 2e-11
Identities = 44/137 (32%), Positives = 67/137 (48%)
Frame = -2
Query: 776 FHGEEKSTMGTVGRRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAI 597
F + R++Y+ VP DI E L FS +GEIE GP G+DK +GK K +A
Sbjct: 156 FSSSSNGSADVSARKIYVGTVPFDISSERLLAAFSAFGEIEEGPLGFDKATGK-SKGFAF 214
Query: 596 IIFKSLDAARKCLQFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGN 417
++K+ + AR L P+K+I GH+++ +A + G TQV + G Q+
Sbjct: 215 FVYKTEEGARAALAEPMKNIDGHQVTCKLAVDNKKSKHGGGTQVPPGDNSGVPPQQM--- 271
Query: 416 NGPRVVWSMPPTGNFGG 366
P + P G + G
Sbjct: 272 -QPGMFRPQPQPGQYPG 287
>ref|NP_188119.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|42572443|ref|NP_974317.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
gi|75335116|sp|Q9LKA4.1|UBA2C_ARATH RecName:
Full=UBP1-associated protein 2C
gi|8777484|dbj|BAA97064.1| unnamed protein product
[Arabidopsis thaliana] gi|17380744|gb|AAL36202.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|20259621|gb|AAM14167.1| putative RNA-binding protein
[Arabidopsis thaliana] gi|222422941|dbj|BAH19456.1|
AT3G15010 [Arabidopsis thaliana]
gi|332642081|gb|AEE75602.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
gi|332642082|gb|AEE75603.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 404
Score = 74.3 bits (181), Expect = 6e-11
Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D+ + L +F YG++E GP G+DKV+GK + +A+ ++K+ + A+ L
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGK-SRGFALFVYKTAEGAQAAL 225
Query: 557 QFPLKDIQGHKISVSVAKARNEGNGDGKTQVKEEKDGGGELSQLGGNNGPRVVWSMPPTG 378
P+K I G ++ +A +G GK + + +DGG + G G +V P G
Sbjct: 226 ADPVKVIDGKHLNCKLAV---DGKKGGKPGMPQAQDGGSGHGHVHG-EGMGMVRPAGPYG 281
Query: 377 NFGGPY---GYSGSTPA 336
GG GYSG PA
Sbjct: 282 AAGGISAYGGYSGGPPA 298
>ref|XP_004969158.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform
X1 [Setaria italica] gi|514778678|ref|XP_004969159.1|
PREDICTED: heterogeneous nuclear ribonucleoprotein
A1-like isoform X2 [Setaria italica]
Length = 450
Score = 74.3 bits (181), Expect = 6e-11
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 8/161 (4%)
Frame = -2
Query: 782 GGFHGEEKSTMGTVG-RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKE 606
GG G + + V R++++ VP D+ E L +F+ YGEIE GP G+DK +GKF +
Sbjct: 160 GGAAGSGGAPVADVSLRKIFVGNVPADMSSERLLAHFASYGEIEEGPLGFDKQTGKF-RG 218
Query: 605 YAIIIFKSLDAARKCLQFPLKDIQGHKISVSVA-------KARNEGNGDGKTQVKEEKDG 447
+A+ ++K+ + A+ L +K I GH++ +A + +++ +G G Q +++
Sbjct: 219 FALFVYKTPEGAQASLVDSVKVIDGHQLVCKLAIEGKKGKQGQSQQSGPGNQQQQQQMLQ 278
Query: 446 GGELSQLGGNNGPRVVWSMPPTGNFGGPYGYSGSTPASAGA 324
GG GG + P G YG GS +S GA
Sbjct: 279 GGPQDMQGG-------LGLGPGPQMGAQYGGPGSGLSSFGA 312
>gb|AFC89654.1| RBP42 [Elaeis guineensis]
Length = 413
Score = 74.3 bits (181), Expect = 6e-11
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 9/154 (5%)
Frame = -2
Query: 737 RRLYLYKVPEDIRPETLTMYFSQYGEIESGPHGYDKVSGKFKKEYAIIIFKSLDAARKCL 558
R++Y+ VP D+ + L +FS YGEIE GP G+DK +GKF + +A+ ++K+ + A L
Sbjct: 161 RKIYVGNVPADMPSDRLLAHFSSYGEIEEGPLGFDKQTGKF-RGFALFVYKTAEGAGASL 219
Query: 557 QFPLKDIQGH----KISVSVAKARNEGNGDGKTQ----VKEEKDGGGELSQLGGNN-GPR 405
P K+I GH K+++ K + G V+ ++ GGG + +GG+ G
Sbjct: 220 VDPTKNIDGHHLVCKLAIDGKKVKPGAPAAGAAAPVGGVQGQRMGGG--ADIGGDGLGMG 277
Query: 404 VVWSMPPTGNFGGPYGYSGSTPASAGAVQSMLPT 303
S+P G+FGG G G P +AG Q P+
Sbjct: 278 HQSSLP--GSFGGYSG--GGIPGAAGLGQHHHPS 307