BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00000723
         (916 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006838087.1| hypothetical protein AMTR_s00106p00017820 [A...   206   1e-50
ref|XP_002864543.1| hypothetical protein ARALYDRAFT_332090 [Arab...   183   7e-44
ref|XP_001781984.1| predicted protein [Physcomitrella patens] gi...   182   2e-43
dbj|BAB08870.1| unnamed protein product [Arabidopsis thaliana]        178   2e-42
ref|NP_001078764.1| C-terminal domain phosphatase-like 4 [Arabid...   178   2e-42
ref|XP_006600548.1| PREDICTED: RNA polymerase II C-terminal doma...   178   3e-42
ref|XP_004242582.1| PREDICTED: RNA polymerase II C-terminal doma...   178   3e-42
ref|XP_006600549.1| PREDICTED: RNA polymerase II C-terminal doma...   176   1e-41
ref|XP_004242583.1| PREDICTED: RNA polymerase II C-terminal doma...   175   2e-41
ref|XP_003550691.1| PREDICTED: RNA polymerase II C-terminal doma...   175   2e-41
ref|XP_006486243.1| PREDICTED: RNA polymerase II C-terminal doma...   174   3e-41
ref|XP_006343662.1| PREDICTED: RNA polymerase II C-terminal doma...   173   7e-41
gb|ESW21086.1| hypothetical protein PHAVU_005G040600g [Phaseolus...   172   2e-40
ref|XP_006401141.1| hypothetical protein EUTSA_v10013455mg [Eutr...   171   3e-40
ref|XP_006575309.1| PREDICTED: RNA polymerase II C-terminal doma...   171   5e-40
ref|XP_002324547.2| hypothetical protein POPTR_0018s11760g [Popu...   171   5e-40
ref|XP_002324546.2| hypothetical protein POPTR_0018s11760g [Popu...   171   5e-40
ref|XP_006372123.1| hypothetical protein POPTR_0018s11760g [Popu...   171   5e-40
ref|XP_002526210.1| RNA polymerase II ctd phosphatase, putative ...   169   1e-39
ref|XP_002965594.1| hypothetical protein SELMODRAFT_167775 [Sela...   168   2e-39

>ref|XP_006838087.1| hypothetical protein AMTR_s00106p00017820 [Amborella trichopoda]
           gi|548840545|gb|ERN00656.1| hypothetical protein
           AMTR_s00106p00017820 [Amborella trichopoda]
          Length = 486

 Score =  206 bits (523), Expect = 1e-50
 Identities = 128/251 (50%), Positives = 158/251 (62%), Gaps = 7/251 (2%)
 Frame = -1

Query: 826 EDQNQRIKRRRLFEGTEEILES----ANVQEEEQLS-SISEK-CPPHPGYMWGVCILCGQ 665
           E + +RIKR ++ E  EEI ES    AN  E +    S SEK CPPHPG+   +CI CG+
Sbjct: 63  EIELERIKRPKICED-EEIKESQSSNANQGELDNFKESTSEKVCPPHPGFYKDMCIRCGE 121

Query: 664 IKKDMENEEK-SGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXXXXXXXXLN 488
            K D     K + V+  YIHKDL+L   E+ R R   L +L   ++K           LN
Sbjct: 122 QKDDETVARKETAVAFNYIHKDLKLGAEEVARLRATDLKNLY-RRRKLYLVLDLDHTLLN 180

Query: 487 SARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKLRPFVHTFL 308
           S R  DV PEEE+Y+ + YL  ET     S  +  T+G L KLE L + TKLRPFV TFL
Sbjct: 181 STRLVDVSPEEEAYLNATYLNKET-----SSSNGDTSGTLFKLEPLHMLTKLRPFVRTFL 235

Query: 307 EEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNLDVVLGAES 128
           +E + M+EM + TMGER Y L+MAKLLDPSG YFG+R+IS  DST RHQK LDVVLG+E 
Sbjct: 236 KEANTMFEMYVYTMGERAYALEMAKLLDPSGVYFGSRVISQGDSTVRHQKGLDVVLGSEC 295

Query: 127 AVVILDDTENV 95
           AVVILDDTE+V
Sbjct: 296 AVVILDDTEHV 306


>ref|XP_002864543.1| hypothetical protein ARALYDRAFT_332090 [Arabidopsis lyrata subsp.
            lyrata] gi|297310378|gb|EFH40802.1| hypothetical protein
            ARALYDRAFT_332090 [Arabidopsis lyrata subsp. lyrata]
          Length = 1006

 Score =  183 bits (465), Expect = 7e-44
 Identities = 120/269 (44%), Positives = 157/269 (58%), Gaps = 11/269 (4%)
 Frame = -1

Query: 871  ASLLESELDS----SPQPSE-------DQNQRIKRRRLFEGTEEILESANVQEEEQLSSI 725
            A+ L++ELDS    S  PSE       D+   +KRR+L     E LE+ + +E E+ SS 
Sbjct: 580  AAFLDAELDSASDASSGPSEEEEEAEDDEESGLKRRKL-----EHLETVDEEEIEEASSS 634

Query: 724  SEKCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASL 545
              +C  HPG    +C +CGQ        E++GVS +YIHK++ L + EI+R R D  +  
Sbjct: 635  KGECQ-HPGSFGNMCFVCGQ------KLEETGVSFRYIHKEMRLNEDEISRLR-DSDSRF 686

Query: 544  ISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLL 365
            +  Q+K           LNS    D+ PEEE   +  +   E  D      S  + G L 
Sbjct: 687  LQRQRKLYLVLDLDHTLLNSTVLRDLKPEEEYLKSHTHSLQEPFDFLLI--SDVSGGSLF 744

Query: 364  KLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISA 185
             LE + + TKLRPFVH+FL+E SEM+ M I TMG+R Y  +MAKLLDP G+YFG RIIS 
Sbjct: 745  MLEFMHMMTKLRPFVHSFLKEASEMFVMYIYTMGDRAYARQMAKLLDPRGEYFGDRIISR 804

Query: 184  IDSTHRHQKNLDVVLGAESAVVILDDTEN 98
             D T RHQK+LDVVLG ESAV+ILDDTEN
Sbjct: 805  DDGTVRHQKSLDVVLGQESAVLILDDTEN 833


>ref|XP_001781984.1| predicted protein [Physcomitrella patens]
           gi|162666557|gb|EDQ53208.1| predicted protein
           [Physcomitrella patens]
          Length = 563

 Score =  182 bits (461), Expect = 2e-43
 Identities = 104/212 (49%), Positives = 134/212 (63%), Gaps = 2/212 (0%)
 Frame = -1

Query: 724 SEKCPPHPGYMWGVCILCGQIKKDMENEEK--SGVSLKYIHKDLELADSEITRFREDGLA 551
           S KCPPHPG++W VCI CG+ K    + +     V L+YIH+ LE+++ E  R R   L 
Sbjct: 119 SNKCPPHPGFIWDVCIRCGKRKSTAPSNDPVIDRVGLRYIHEGLEVSELEAARVRNAELR 178

Query: 550 SLISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGD 371
             ++ +QK           LNSARF++V  EE  Y+T  + AG+ +   +S         
Sbjct: 179 R-VTGKQKLLLVVDLDHTMLNSARFSEVPAEERIYLT--WTAGQQHGRVSS--------- 226

Query: 370 LLKLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRII 191
           L +L  L +WTKLRPF H FLEE S++YEM + TMGE+ Y   MA+LLDP+G+ FG RII
Sbjct: 227 LHQLTKLGMWTKLRPFAHKFLEEASKLYEMYVYTMGEKIYAQAMAELLDPTGQLFGGRII 286

Query: 190 SAIDSTHRHQKNLDVVLGAESAVVILDDTENV 95
           S  DST RH K+LDVVLGAESAVVILDDTE V
Sbjct: 287 SQTDSTKRHTKDLDVVLGAESAVVILDDTEAV 318


>dbj|BAB08870.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1065

 Score =  178 bits (452), Expect = 2e-42
 Identities = 109/258 (42%), Positives = 151/258 (58%)
 Frame = -1

Query: 871  ASLLESELDSSPQPSEDQNQRIKRRRLFEGTEEILESANVQEEEQLSSISEKCPPHPGYM 692
            A+ L++ELDS+   S   ++  +     +  E  L+   ++  E+ SS   +C  HPG  
Sbjct: 644  AAFLDAELDSASDASSGPSEEEEAE---DDVESGLKRQKLEHLEEASSSKGECE-HPGSF 699

Query: 691  WGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXX 512
              +C +CGQ        E++GVS +YIHK++ L + EI+R R D  +  +  Q+K     
Sbjct: 700  GNMCFVCGQ------KLEETGVSFRYIHKEMRLNEDEISRLR-DSDSRFLQRQRKLYLVL 752

Query: 511  XXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKL 332
                  LN+    D+ PEEE      YL   T+  S  D    + G L  LE +++ TKL
Sbjct: 753  DLDHTLLNTTILRDLKPEEE------YLKSHTH--SLQDGCNVSGGSLFLLEFMQMMTKL 804

Query: 331  RPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNL 152
            RPFVH+FL+E SEM+ M I TMG+R Y  +MAKLLDP G+YFG R+IS  D T RH+K+L
Sbjct: 805  RPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSL 864

Query: 151  DVVLGAESAVVILDDTEN 98
            DVVLG ESAV+ILDDTEN
Sbjct: 865  DVVLGQESAVLILDDTEN 882


>ref|NP_001078764.1| C-terminal domain phosphatase-like 4 [Arabidopsis thaliana]
           gi|122154038|sp|Q00IB6.1|CPL4_ARATH RecName: Full=RNA
           polymerase II C-terminal domain phosphatase-like 4;
           Short=FCP-like 4; AltName: Full=Carboxyl-terminal
           phosphatase-like 4; Short=AtCPL4; Short=CTD
           phosphatase-like 4 gi|95115186|gb|ABF55959.1|
           carboxyl-terminal phosphatase-like 4 [Arabidopsis
           thaliana] gi|332009601|gb|AED96984.1| C-terminal domain
           phosphatase-like 4 [Arabidopsis thaliana]
          Length = 440

 Score =  178 bits (452), Expect = 2e-42
 Identities = 109/258 (42%), Positives = 151/258 (58%)
 Frame = -1

Query: 871 ASLLESELDSSPQPSEDQNQRIKRRRLFEGTEEILESANVQEEEQLSSISEKCPPHPGYM 692
           A+ L++ELDS+   S   ++  +     +  E  L+   ++  E+ SS   +C  HPG  
Sbjct: 19  AAFLDAELDSASDASSGPSEEEEAE---DDVESGLKRQKLEHLEEASSSKGECE-HPGSF 74

Query: 691 WGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXX 512
             +C +CGQ        E++GVS +YIHK++ L + EI+R R D  +  +  Q+K     
Sbjct: 75  GNMCFVCGQ------KLEETGVSFRYIHKEMRLNEDEISRLR-DSDSRFLQRQRKLYLVL 127

Query: 511 XXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKL 332
                 LN+    D+ PEEE      YL   T+  S  D    + G L  LE +++ TKL
Sbjct: 128 DLDHTLLNTTILRDLKPEEE------YLKSHTH--SLQDGCNVSGGSLFLLEFMQMMTKL 179

Query: 331 RPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNL 152
           RPFVH+FL+E SEM+ M I TMG+R Y  +MAKLLDP G+YFG R+IS  D T RH+K+L
Sbjct: 180 RPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSL 239

Query: 151 DVVLGAESAVVILDDTEN 98
           DVVLG ESAV+ILDDTEN
Sbjct: 240 DVVLGQESAVLILDDTEN 257


>ref|XP_006600548.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like isoform X2 [Glycine max]
          Length = 444

 Score =  178 bits (451), Expect = 3e-42
 Identities = 122/271 (45%), Positives = 155/271 (57%), Gaps = 14/271 (5%)
 Frame = -1

Query: 868 SLLESELD-SSPQPSED----------QNQRIKRRRLFEGTEEILESAN---VQEEEQLS 731
           + L++ELD SSP  S D          Q+ R KRR+ FE  EE   S +   V+   + S
Sbjct: 19  AFLDAELDASSPDSSPDKEVVKQDDELQSVRTKRRK-FESIEETEGSTSEGIVKRSLEAS 77

Query: 730 SISEKCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLA 551
           S  + C  HPG    +CI CGQ K D E    SGV+  YIHK L L D EI+R R   + 
Sbjct: 78  SEVDVCCTHPGSFGNMCIRCGQ-KLDGE----SGVTFGYIHKGLRLHDEEISRLRNTDMK 132

Query: 550 SLISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGD 371
           SL+  ++K           LNS   A +  EE       +L  +T+  +  D SK   G 
Sbjct: 133 SLLG-RKKLYLVLDLDHTLLNSTHLAQLTSEE------LHLLNQTDSLTMIDVSK---GS 182

Query: 370 LLKLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRII 191
           L KLE + + TKLRPFV  FL+E SEM+EM I TMG+R Y L+MAKLLDP G+YF  ++I
Sbjct: 183 LFKLEHMNMMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVI 242

Query: 190 SAIDSTHRHQKNLDVVLGAESAVVILDDTEN 98
           S  D T +HQK LDVVLG ESAV+ILDDTE+
Sbjct: 243 SRDDGTQKHQKGLDVVLGQESAVIILDDTEH 273


>ref|XP_004242582.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like [Solanum lycopersicum]
          Length = 512

 Score =  178 bits (451), Expect = 3e-42
 Identities = 113/260 (43%), Positives = 149/260 (57%), Gaps = 5/260 (1%)
 Frame = -1

Query: 859 ESELDSSPQPSEDQNQRIKRRR--LFEGTEEILESANVQEEEQLSSIS---EKCPPHPGY 695
           + + D+        + R K+R+  L EG  +   S +  E  + S  S   + C  HPG 
Sbjct: 97  DEDNDTGDGDGSIDSSRSKKRKIELIEGAVDPQSSVSRGEPAETSGASMALDVCT-HPGV 155

Query: 694 MWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXX 515
           M G+CI CGQ     + E++SGV+  YIHK+L LAD E+ R RE  L +L+ H+ K    
Sbjct: 156 MGGMCIRCGQ-----KVEDESGVAFGYIHKNLRLADDEVARLREKDLKNLLRHR-KLILV 209

Query: 514 XXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTK 335
                  LNS R AD+  EE      R +  +           +   +L KL+ + + TK
Sbjct: 210 LDLDHTLLNSTRLADISAEESYLKDQREVLPD-----------ALRSNLFKLDWIHMMTK 258

Query: 334 LRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKN 155
           LRPFVHTFL+E S ++EM I TMGER Y L+MAKLLDP G YF +R+I+  DST RHQK 
Sbjct: 259 LRPFVHTFLKEASSLFEMYIYTMGERPYALEMAKLLDPGGIYFHSRVIAQSDSTRRHQKG 318

Query: 154 LDVVLGAESAVVILDDTENV 95
           LDVVLG ESAV+ILDDTE V
Sbjct: 319 LDVVLGQESAVLILDDTEVV 338


>ref|XP_006600549.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like isoform X3 [Glycine max]
          Length = 401

 Score =  176 bits (445), Expect = 1e-41
 Identities = 112/243 (46%), Positives = 142/243 (58%), Gaps = 3/243 (1%)
 Frame = -1

Query: 817 NQRIKRRRLFEGTEEILESAN---VQEEEQLSSISEKCPPHPGYMWGVCILCGQIKKDME 647
           N R+ +RR FE  EE   S +   V+   + SS  + C  HPG    +CI CGQ K D E
Sbjct: 3   NFRVTKRRKFESIEETEGSTSEGIVKRSLEASSEVDVCCTHPGSFGNMCIRCGQ-KLDGE 61

Query: 646 NEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXXXXXXXXLNSARFADV 467
               SGV+  YIHK L L D EI+R R   + SL+  ++K           LNS   A +
Sbjct: 62  ----SGVTFGYIHKGLRLHDEEISRLRNTDMKSLLG-RKKLYLVLDLDHTLLNSTHLAQL 116

Query: 466 LPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKLRPFVHTFLEEVSEMY 287
             EE       +L  +T+  +  D SK   G L KLE + + TKLRPFV  FL+E SEM+
Sbjct: 117 TSEE------LHLLNQTDSLTMIDVSK---GSLFKLEHMNMMTKLRPFVRPFLKEASEMF 167

Query: 286 EMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNLDVVLGAESAVVILDD 107
           EM I TMG+R Y L+MAKLLDP G+YF  ++IS  D T +HQK LDVVLG ESAV+ILDD
Sbjct: 168 EMYIYTMGDRPYALEMAKLLDPQGEYFNAKVISRDDGTQKHQKGLDVVLGQESAVIILDD 227

Query: 106 TEN 98
           TE+
Sbjct: 228 TEH 230


>ref|XP_004242583.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like [Solanum lycopersicum]
          Length = 472

 Score =  175 bits (444), Expect = 2e-41
 Identities = 110/245 (44%), Positives = 144/245 (58%), Gaps = 4/245 (1%)
 Frame = -1

Query: 817 NQRIKRRR--LFEGT--EEILESANVQEEEQLSSISEKCPPHPGYMWGVCILCGQIKKDM 650
           ++R K+R+  L E     + L S     E   +S++     HPG M G+CI CGQ     
Sbjct: 71  SRRSKKRKIELIEAAVDPQSLVSRGESAETSGASLALDVCTHPGVMGGMCIRCGQ----- 125

Query: 649 ENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXXXXXXXXLNSARFAD 470
           + E++SGV+  YIHK+L LAD E+ R RE  L +L+ H+ K           LNS R AD
Sbjct: 126 KVEDESGVAFGYIHKNLRLADDEVARLREKDLKNLLRHR-KLILVLDLDHTLLNSTRLAD 184

Query: 469 VLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKLRPFVHTFLEEVSEM 290
           +  EE      R +  +           +   +L KL+ + + TKLRPFVHTFL+E S +
Sbjct: 185 ISAEESYLKDQREVLPD-----------ALRSNLFKLDWIHMMTKLRPFVHTFLKEASSL 233

Query: 289 YEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNLDVVLGAESAVVILD 110
           +EM I TMGER Y L+MAKLLDP G YF +R+I+  DST RHQK LDVVLG ESAV+ILD
Sbjct: 234 FEMYIYTMGERPYALEMAKLLDPGGIYFHSRVIAQSDSTRRHQKGLDVVLGQESAVLILD 293

Query: 109 DTENV 95
           DTE V
Sbjct: 294 DTEVV 298


>ref|XP_003550691.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like isoform X1 [Glycine max]
          Length = 442

 Score =  175 bits (443), Expect = 2e-41
 Identities = 122/271 (45%), Positives = 156/271 (57%), Gaps = 14/271 (5%)
 Frame = -1

Query: 868 SLLESELD-SSPQPSED----------QNQRIKRRRLFEGTEEILESAN---VQEEEQLS 731
           + L++ELD SSP  S D          Q+ R KRR+ FE  EE   S +   V+   + S
Sbjct: 19  AFLDAELDASSPDSSPDKEVVKQDDELQSVRTKRRK-FESIEETEGSTSEGIVKRSLEAS 77

Query: 730 SISEKCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLA 551
           S  + C  HPG    +CI CGQ K D E    SGV+  YIHK L L D EI+R R   + 
Sbjct: 78  SEVDVCCTHPGSFGNMCIRCGQ-KLDGE----SGVTFGYIHKGLRLHDEEISRLRNTDMK 132

Query: 550 SLISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGD 371
           SL+  ++K           LNS   A +  EE       +L  +T+  S ++ SK   G 
Sbjct: 133 SLLG-RKKLYLVLDLDHTLLNSTHLAQLTSEE------LHLLNQTD--SLTNVSK---GS 180

Query: 370 LLKLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRII 191
           L KLE + + TKLRPFV  FL+E SEM+EM I TMG+R Y L+MAKLLDP G+YF  ++I
Sbjct: 181 LFKLEHMNMMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVI 240

Query: 190 SAIDSTHRHQKNLDVVLGAESAVVILDDTEN 98
           S  D T +HQK LDVVLG ESAV+ILDDTE+
Sbjct: 241 SRDDGTQKHQKGLDVVLGQESAVIILDDTEH 271


>ref|XP_006486243.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like isoform X1 [Citrus sinensis]
           gi|568865772|ref|XP_006486244.1| PREDICTED: RNA
           polymerase II C-terminal domain phosphatase-like 4-like
           isoform X2 [Citrus sinensis]
           gi|568865774|ref|XP_006486245.1| PREDICTED: RNA
           polymerase II C-terminal domain phosphatase-like 4-like
           isoform X3 [Citrus sinensis]
          Length = 478

 Score =  174 bits (442), Expect = 3e-41
 Identities = 113/261 (43%), Positives = 149/261 (57%), Gaps = 6/261 (2%)
 Frame = -1

Query: 862 LESELDSSPQPSEDQNQRIKRRRLFEGTEEILES------ANVQEEEQLSSISEKCPPHP 701
           ++ E ++     +   +RIKRR+  +  E I E        N++E+ ++S   + CP HP
Sbjct: 48  IDEEAENEEARDDKDLERIKRRKT-QIVETIQERPGPTLLGNLEEKTEVSLEMDNCP-HP 105

Query: 700 GYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXX 521
           G + G+C  CG+       EE+SGV+  YI K L L + EI R R   +  L+ H+ K  
Sbjct: 106 GSLGGMCYRCGK-----RLEEESGVTFSYICKGLRLGNDEIDRLRNTDMKHLLRHR-KLY 159

Query: 520 XXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIW 341
                    LNS     + PEE+      YL  + +  S  D SK   G L  L  + + 
Sbjct: 160 LILDLDHTLLNSTLLLHLTPEED------YLKSQAD--SLQDVSK---GSLFMLAFMNMM 208

Query: 340 TKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQ 161
           TKLRPFVHTFL+E SEM+EM I TMG+R Y L+MAKLLDPS +YF  R+IS  D T RHQ
Sbjct: 209 TKLRPFVHTFLKEASEMFEMYIYTMGDRPYALEMAKLLDPSREYFNARVISRDDGTQRHQ 268

Query: 160 KNLDVVLGAESAVVILDDTEN 98
           K LDVVLG ESAV+ILDDTEN
Sbjct: 269 KGLDVVLGQESAVLILDDTEN 289


>ref|XP_006343662.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like [Solanum tuberosum]
          Length = 478

 Score =  173 bits (439), Expect = 7e-41
 Identities = 111/255 (43%), Positives = 145/255 (56%), Gaps = 4/255 (1%)
 Frame = -1

Query: 847 DSSPQPSEDQNQRIKRR-RLFEGTEEILESANVQEEEQLSSIS---EKCPPHPGYMWGVC 680
           D     S D ++  KR+  L E   +   S +  E  + S  S   + C  HPG M G+C
Sbjct: 68  DDDDDGSIDSSRSKKRKIELIEAAVDPQSSVSRGEPAETSGASLALDVCT-HPGVMGGMC 126

Query: 679 ILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXXXXXX 500
           I CGQ     + E++SGV+  YIHK+L LAD E+ R R+  L +L+ H+ K         
Sbjct: 127 IRCGQ-----KVEDESGVAFGYIHKNLRLADDEVARLRDKDLKNLLRHK-KLILVLDLDH 180

Query: 499 XXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKLRPFV 320
             LNS R AD+  EE      R +  +           +   +L KL+ + + TKLRPFV
Sbjct: 181 TLLNSTRLADISAEESYLKDQREVLPD-----------ALRNNLFKLDWIHMMTKLRPFV 229

Query: 319 HTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNLDVVL 140
           HTFL+E S ++EM I TMGER Y L+MA LLDP G YF +R+I+  DST RHQK LDVVL
Sbjct: 230 HTFLKEASSLFEMYIYTMGERPYALEMASLLDPGGIYFHSRVIAQSDSTRRHQKGLDVVL 289

Query: 139 GAESAVVILDDTENV 95
           G ESAV+ILDDTE V
Sbjct: 290 GQESAVLILDDTEVV 304


>gb|ESW21086.1| hypothetical protein PHAVU_005G040600g [Phaseolus vulgaris]
           gi|561022357|gb|ESW21087.1| hypothetical protein
           PHAVU_005G040600g [Phaseolus vulgaris]
          Length = 443

 Score =  172 bits (436), Expect = 2e-40
 Identities = 119/269 (44%), Positives = 158/269 (58%), Gaps = 12/269 (4%)
 Frame = -1

Query: 868 SLLESELD-SSPQPSED---QNQ------RIKRRRLFEGTEEILESAN--VQEEEQLSSI 725
           + L++EL  SSP+ S D   +NQ      RIKRR++ E TEE   S +  + ++   +S+
Sbjct: 19  AFLDAELGASSPESSPDKEAENQDELESVRIKRRKI-ESTEETEGSTSEGILKQNLETSV 77

Query: 724 SEKCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASL 545
                 HPG    +CI CGQ     + + KSGV+  YIHK L L D EI+R R   + SL
Sbjct: 78  EVDVCTHPGSFGSMCIRCGQ-----KLDGKSGVTFGYIHKGLRLHDEEISRLRNTDMKSL 132

Query: 544 ISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLL 365
           +  ++K           LNS   A +  EE       +L  +T+  S  D SK   G L 
Sbjct: 133 LC-RKKLYLVLDLDHTLLNSTLLAHLSSEES------HLLNQTD--SLQDVSK---GSLF 180

Query: 364 KLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISA 185
           KLE + + TKLRPFV +FL+E +EM+EM I TMG+R Y L+MAKLLDP G+YF  R+IS 
Sbjct: 181 KLEHMHMMTKLRPFVRSFLKEATEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNARVISR 240

Query: 184 IDSTHRHQKNLDVVLGAESAVVILDDTEN 98
            D T +HQK LDVVLG ESAV+ILDDTE+
Sbjct: 241 DDGTQKHQKGLDVVLGQESAVLILDDTEH 269


>ref|XP_006401141.1| hypothetical protein EUTSA_v10013455mg [Eutrema salsugineum]
           gi|557102231|gb|ESQ42594.1| hypothetical protein
           EUTSA_v10013455mg [Eutrema salsugineum]
          Length = 467

 Score =  171 bits (434), Expect = 3e-40
 Identities = 114/271 (42%), Positives = 154/271 (56%), Gaps = 16/271 (5%)
 Frame = -1

Query: 862 LESELDSSPQ--PSEDQ-------NQRIKRRRLF-------EGTEEILESANVQEEEQLS 731
           LES+ DSS +  PSE+        N R+K+R+L        EG E +      +E  + S
Sbjct: 25  LESDSDSSSESFPSEEAEDDTEVANHRLKKRKLEHLETVEEEGVENVASVTFSEEISEAS 84

Query: 730 SISEKCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLA 551
           S    C  HPG +  +CILCG      E  E++GV L+Y+H+D+ +   EI+R R+  + 
Sbjct: 85  SSKRPCD-HPGSIKQICILCG------EPVEQTGVPLRYMHQDMWIHQEEISRIRDSDI- 136

Query: 550 SLISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGD 371
             +  Q+K           LN+    D+ PEE+      YL   T+  S  D S    GD
Sbjct: 137 KFLQRQRKLCLVLDLDHTLLNTTVLRDLKPEED------YLKSHTH--SLQDVS---GGD 185

Query: 370 LLKLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRII 191
           L  L+ + + TKLRPFV +FL+E SEM+ M I TMG+R Y  KMA+LLDP G+YF  RII
Sbjct: 186 LFMLDFMNMMTKLRPFVRSFLKEASEMFVMYIYTMGDRDYARKMAELLDPKGEYFSGRII 245

Query: 190 SAIDSTHRHQKNLDVVLGAESAVVILDDTEN 98
           S  D T +HQK+LDVVLG ES+V+ILDDTEN
Sbjct: 246 SRDDGTVKHQKSLDVVLGQESSVLILDDTEN 276


>ref|XP_006575309.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           4-like [Glycine max]
          Length = 442

 Score =  171 bits (432), Expect = 5e-40
 Identities = 121/272 (44%), Positives = 156/272 (57%), Gaps = 15/272 (5%)
 Frame = -1

Query: 868 SLLESELD-SSPQPSED-----------QNQRIKRRRLFEGTEEILESAN---VQEEEQL 734
           + L++ELD SSP  S D           ++ RIKRR+ FE  EE   S +   +++  + 
Sbjct: 19  AFLDAELDASSPDSSPDKEVEKQDDDELESVRIKRRK-FESIEETEGSTSEGIIKQSLEA 77

Query: 733 SSISEKCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGL 554
           S   + C  HPG    +CI CGQ K D E    SGV+  YIHK L L D EI+R R   +
Sbjct: 78  SMEVDVCT-HPGSFGNMCIRCGQ-KLDGE----SGVTFGYIHKGLRLHDEEISRLRNTDM 131

Query: 553 ASLISHQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNG 374
            SL+  ++K           LNS   A +  EE       +L  +T+  S  D SK   G
Sbjct: 132 KSLLC-RKKLYLVLDLDHTLLNSTHLAHLTSEES------HLLNQTD--SLRDVSK---G 179

Query: 373 DLLKLEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRI 194
            L KLE + + TKLRPFV  FL+E SEM+EM I TMG+R Y L+MAKLLDP G+YF  ++
Sbjct: 180 SLFKLEHMNMMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKV 239

Query: 193 ISAIDSTHRHQKNLDVVLGAESAVVILDDTEN 98
           IS  D T +HQK LDVVLG ESAV+ILDDTE+
Sbjct: 240 ISRDDGTQKHQKGLDVVLGQESAVLILDDTEH 271


>ref|XP_002324547.2| hypothetical protein POPTR_0018s11760g [Populus trichocarpa]
           gi|550318538|gb|EEF03112.2| hypothetical protein
           POPTR_0018s11760g [Populus trichocarpa]
          Length = 472

 Score =  171 bits (432), Expect = 5e-40
 Identities = 111/267 (41%), Positives = 153/267 (57%), Gaps = 10/267 (3%)
 Frame = -1

Query: 868 SLLESELDSSPQPSEDQNQRIKRRRLFEG---TEEILES-------ANVQEEEQLSSISE 719
           S   S  D   +  ED +   +R+R+      T EI+E        A+++   + +SIS+
Sbjct: 47  SAASSSPDQDKEAEEDDDSDFQRKRVKRSKVETVEIVEDDGGTTSFASLKHNSE-ASISK 105

Query: 718 KCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLIS 539
           +   HPG    +CI+CGQ+      + +SGV+  YIHK L L + EI R R   + +L+ 
Sbjct: 106 EICTHPGSFGTMCIVCGQLL-----DGESGVTFGYIHKGLRLGNDEIVRLRNTDMKNLLR 160

Query: 538 HQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKL 359
           H+ K           LNS +   +  +EE      YL G+T+  S  D SK   G L  L
Sbjct: 161 HK-KLYLILDLDHTLLNSTQLMHMTLDEE------YLNGQTD--SLQDVSK---GSLFML 208

Query: 358 EALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAID 179
            ++++ TKLRPFV TFL+E S+M+EM I TMG+R Y L+MAKLLDP  +YF  ++IS  D
Sbjct: 209 SSMQMMTKLRPFVRTFLKEASQMFEMYIYTMGDRAYALEMAKLLDPGREYFNAKVISRDD 268

Query: 178 STHRHQKNLDVVLGAESAVVILDDTEN 98
            T RHQK LDVVLG ESAV+ILDDTEN
Sbjct: 269 GTQRHQKGLDVVLGQESAVLILDDTEN 295


>ref|XP_002324546.2| hypothetical protein POPTR_0018s11760g [Populus trichocarpa]
           gi|550318537|gb|EEF03111.2| hypothetical protein
           POPTR_0018s11760g [Populus trichocarpa]
          Length = 468

 Score =  171 bits (432), Expect = 5e-40
 Identities = 111/267 (41%), Positives = 153/267 (57%), Gaps = 10/267 (3%)
 Frame = -1

Query: 868 SLLESELDSSPQPSEDQNQRIKRRRLFEG---TEEILES-------ANVQEEEQLSSISE 719
           S   S  D   +  ED +   +R+R+      T EI+E        A+++   + +SIS+
Sbjct: 47  SAASSSPDQDKEAEEDDDSDFQRKRVKRSKVETVEIVEDDGGTTSFASLKHNSE-ASISK 105

Query: 718 KCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLIS 539
           +   HPG    +CI+CGQ+      + +SGV+  YIHK L L + EI R R   + +L+ 
Sbjct: 106 EICTHPGSFGTMCIVCGQLL-----DGESGVTFGYIHKGLRLGNDEIVRLRNTDMKNLLR 160

Query: 538 HQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKL 359
           H+ K           LNS +   +  +EE      YL G+T+  S  D SK   G L  L
Sbjct: 161 HK-KLYLILDLDHTLLNSTQLMHMTLDEE------YLNGQTD--SLQDVSK---GSLFML 208

Query: 358 EALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAID 179
            ++++ TKLRPFV TFL+E S+M+EM I TMG+R Y L+MAKLLDP  +YF  ++IS  D
Sbjct: 209 SSMQMMTKLRPFVRTFLKEASQMFEMYIYTMGDRAYALEMAKLLDPGREYFNAKVISRDD 268

Query: 178 STHRHQKNLDVVLGAESAVVILDDTEN 98
            T RHQK LDVVLG ESAV+ILDDTEN
Sbjct: 269 GTQRHQKGLDVVLGQESAVLILDDTEN 295


>ref|XP_006372123.1| hypothetical protein POPTR_0018s11760g [Populus trichocarpa]
           gi|550318536|gb|ERP49920.1| hypothetical protein
           POPTR_0018s11760g [Populus trichocarpa]
          Length = 378

 Score =  171 bits (432), Expect = 5e-40
 Identities = 111/267 (41%), Positives = 153/267 (57%), Gaps = 10/267 (3%)
 Frame = -1

Query: 868 SLLESELDSSPQPSEDQNQRIKRRRLFEG---TEEILES-------ANVQEEEQLSSISE 719
           S   S  D   +  ED +   +R+R+      T EI+E        A+++   + +SIS+
Sbjct: 47  SAASSSPDQDKEAEEDDDSDFQRKRVKRSKVETVEIVEDDGGTTSFASLKHNSE-ASISK 105

Query: 718 KCPPHPGYMWGVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLIS 539
           +   HPG    +CI+CGQ+      + +SGV+  YIHK L L + EI R R   + +L+ 
Sbjct: 106 EICTHPGSFGTMCIVCGQLL-----DGESGVTFGYIHKGLRLGNDEIVRLRNTDMKNLLR 160

Query: 538 HQQKXXXXXXXXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKL 359
           H+ K           LNS +   +  +EE      YL G+T+  S  D SK   G L  L
Sbjct: 161 HK-KLYLILDLDHTLLNSTQLMHMTLDEE------YLNGQTD--SLQDVSK---GSLFML 208

Query: 358 EALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAID 179
            ++++ TKLRPFV TFL+E S+M+EM I TMG+R Y L+MAKLLDP  +YF  ++IS  D
Sbjct: 209 SSMQMMTKLRPFVRTFLKEASQMFEMYIYTMGDRAYALEMAKLLDPGREYFNAKVISRDD 268

Query: 178 STHRHQKNLDVVLGAESAVVILDDTEN 98
            T RHQK LDVVLG ESAV+ILDDTEN
Sbjct: 269 GTQRHQKGLDVVLGQESAVLILDDTEN 295


>ref|XP_002526210.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis]
           gi|223534449|gb|EEF36151.1| RNA polymerase II ctd
           phosphatase, putative [Ricinus communis]
          Length = 478

 Score =  169 bits (429), Expect = 1e-39
 Identities = 110/257 (42%), Positives = 143/257 (55%), Gaps = 3/257 (1%)
 Frame = -1

Query: 859 ESELDSSPQPSEDQNQRIKRRRL--FEGTEEILESANVQEEEQLSSISEKCP-PHPGYMW 689
           E E   S   S+    RIKR R+   E  E   ES  V  ++ L + S K    HPG   
Sbjct: 59  EEEESDSDDDSDIATNRIKRSRVETLENGENPKESTRVSLDQTLVASSSKVACTHPGSFG 118

Query: 688 GVCILCGQIKKDMENEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXXXXX 509
            +CILCG+        E++GV+  YIHK L LA+ EI R R   + +L+ H+ K      
Sbjct: 119 DMCILCGE-----RLIEETGVTFGYIHKGLRLANDEIVRLRNTDMKNLLRHR-KLYLVLD 172

Query: 508 XXXXXLNSARFADVLPEEESYITSRYLAGETNDGSASDKSKSTNGDLLKLEALKIWTKLR 329
                LNS +   +  EEE      YL  + +  S  D S   NG L  ++ + + TKLR
Sbjct: 173 LDHTLLNSTQLMHLTAEEE------YLKSQID--SMQDVS---NGSLFMVDFMHMMTKLR 221

Query: 328 PFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAIDSTHRHQKNLD 149
           PF+ TFL+E S+M+EM I TMG+R Y L+MAK LDP  +YF  R+IS  D T RHQK LD
Sbjct: 222 PFIRTFLKEASQMFEMYIYTMGDRAYALEMAKFLDPGREYFNARVISRDDGTQRHQKGLD 281

Query: 148 VVLGAESAVVILDDTEN 98
           +VLG ESAV+ILDDTEN
Sbjct: 282 IVLGQESAVLILDDTEN 298


>ref|XP_002965594.1| hypothetical protein SELMODRAFT_167775 [Selaginella moellendorffii]
           gi|300166408|gb|EFJ33014.1| hypothetical protein
           SELMODRAFT_167775 [Selaginella moellendorffii]
          Length = 411

 Score =  168 bits (426), Expect = 2e-39
 Identities = 93/209 (44%), Positives = 129/209 (61%), Gaps = 9/209 (4%)
 Frame = -1

Query: 694 MWGVCILCGQIKKDME-NEEKSGVSLKYIHKDLELADSEITRFREDGLASLISHQQKXXX 518
           MWGVCI CG +K + E     S V+LKYIH++ ELA   + R RED L  ++  ++K   
Sbjct: 1   MWGVCIRCGVLKPNSEPGGSASNVALKYIHEEFELAGDVLARVREDELRQVLG-KRKLFL 59

Query: 517 XXXXXXXXLNSARFADVLPEEESYITSRYL--------AGETNDGSASDKSKSTNGDLLK 362
                   LNSAR+ +V P+E +Y+   Y+        A      + +   +   G L +
Sbjct: 60  VLDLDHTLLNSARWMEVFPDETAYLEHTYMNVPEDKIPALSNGAPAVAGVIQPGGGGLHR 119

Query: 361 LEALKIWTKLRPFVHTFLEEVSEMYEMCINTMGERFYTLKMAKLLDPSGKYFGTRIISAI 182
           +  +++WTKLRPF H FLEE S+++EM + TMGER Y + MA LLDP+GK+F  R+IS  
Sbjct: 120 IHGMQLWTKLRPFAHKFLEEASKLFEMYVYTMGERMYAVTMAHLLDPTGKFFKGRVISQR 179

Query: 181 DSTHRHQKNLDVVLGAESAVVILDDTENV 95
           DST R  K+LD+VLGA+SAV+ILDDTE V
Sbjct: 180 DSTCRQTKDLDIVLGADSAVLILDDTEAV 208