BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00000578
         (575 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001235479.1| uncharacterized protein LOC100500004 [Glycin...   119   6e-25
ref|NP_001147391.1| photosystem II core complex proteins psbY [Z...   119   7e-25
gb|ABK26111.1| unknown [Picea sitchensis] gi|116792769|gb|ABK264...   118   1e-24
gb|ABK22811.1| unknown [Picea sitchensis]                             118   1e-24
gb|ABK21316.1| unknown [Picea sitchensis] gi|116779793|gb|ABK214...   118   1e-24
ref|XP_003601864.1| Photosystem II core complex proteins psbY [M...   117   2e-24
gb|AFK43145.1| unknown [Medicago truncatula]                          117   2e-24
gb|AFW61341.1| photosystem II core complex protein psbY [Zea mays]    117   2e-24
ref|NP_001147739.1| photosystem II core complex proteins psbY [Z...   117   2e-24
gb|AFW74395.1| hypothetical protein ZEAMMB73_053443, partial [Ze...   116   5e-24
ref|NP_001147385.1| photosystem II core complex proteins psbY [Z...   116   5e-24
gb|AFK46434.1| unknown [Lotus japonicus]                              115   6e-24
ref|NP_001240940.1| uncharacterized protein LOC100779397 [Glycin...   115   6e-24
ref|XP_004972988.1| PREDICTED: photosystem II core complex prote...   115   8e-24
ref|XP_002444967.1| hypothetical protein SORBIDRAFT_07g002060 [S...   115   1e-23
gb|ACN39867.1| unknown [Picea sitchensis]                             115   1e-23
ref|XP_002515034.1| photosystem II core complex proteins psbY, c...   115   1e-23
ref|XP_004142959.1| PREDICTED: photosystem II core complex prote...   114   2e-23
ref|XP_003573314.1| PREDICTED: photosystem II core complex prote...   114   2e-23
dbj|BAJ98138.1| predicted protein [Hordeum vulgare subsp. vulgar...   113   3e-23

>ref|NP_001235479.1| uncharacterized protein LOC100500004 [Glycine max]
           gi|255628451|gb|ACU14570.1| unknown [Glycine max]
          Length = 192

 Score =  119 bits (298), Expect = 6e-25
 Identities = 63/110 (57%), Positives = 75/110 (68%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG  LLL + PAIGWVLFNIL+PALNQLNRMRS K V            V +P+A  A
Sbjct: 83  DNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLGLGGLAGLVAAPHASAA 142

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A + +  +A   S+D RG L+  V+ PA+ WVL+NILQPALNQLNRMRS
Sbjct: 143 AASE-VAAMAEAASNDNRGQLLLFVVTPAIAWVLYNILQPALNQLNRMRS 191



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 34/64 (53%), Positives = 40/64 (62%)
 Frame = -2

Query: 280 AKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIAEIQ 101
           A A Q + D+A     D RG  + L + PA+GWVLFNILQPALNQLNRMRS    I  + 
Sbjct: 70  AFAVQQIADIA---EGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLG 126

Query: 100 FGPL 89
            G L
Sbjct: 127 LGGL 130


>ref|NP_001147391.1| photosystem II core complex proteins psbY [Zea mays]
           gi|195610958|gb|ACG27309.1| photosystem II core complex
           proteins psbY [Zea mays]
          Length = 176

 Score =  119 bits (297), Expect = 7e-25
 Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 1/112 (0%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           D+RG LLL+V+ PAIGWVL+NIL+PALNQLNRMRS+++V           G+ +P    A
Sbjct: 65  DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAGMAAPPEASA 124

Query: 277 KAQQALFDLAAEG-SSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
              Q L  +AA   + D RG L+ +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 125 AVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 176



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 29/42 (69%), Positives = 36/42 (85%)
 Frame = -2

Query: 250 AAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
           AA+   D RG L+ +V+APA+GWVL+NILQPALNQLNRMRS+
Sbjct: 59  AADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSS 100


>gb|ABK26111.1| unknown [Picea sitchensis] gi|116792769|gb|ABK26490.1| unknown
           [Picea sitchensis] gi|148906010|gb|ABR16165.1| unknown
           [Picea sitchensis] gi|148906227|gb|ABR16269.1| unknown
           [Picea sitchensis] gi|148907833|gb|ABR17041.1| unknown
           [Picea sitchensis] gi|148908345|gb|ABR17286.1| unknown
           [Picea sitchensis] gi|224285567|gb|ACN40502.1| unknown
           [Picea sitchensis]
          Length = 207

 Score =  118 bits (295), Expect = 1e-24
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           D+RGTLLLL L PAI WVL+NIL+PALNQ+NRM+ A  +             F    E+A
Sbjct: 96  DSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA-GLVAFAGLGAAGGAAFLSNPEEA 154

Query: 277 KAQQALFDLAAE-GSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A+Q +FDLAA+  ++D RG L+ +V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 155 HAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAK 347
           DNRG LLL+V+ PAIGWVLFNIL+PALNQ+N+MRS K
Sbjct: 171 DNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRSGK 207



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = -2

Query: 286 EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 131
           + A A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSAAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>gb|ABK22811.1| unknown [Picea sitchensis]
          Length = 206

 Score =  118 bits (295), Expect = 1e-24
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           D+RGTLLLL L PAI WVL+NIL+PALNQ+NRM+ A  +             F    E+A
Sbjct: 96  DSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA-GLVAFAGLGAAGGAAFLSNPEEA 154

Query: 277 KAQQALFDLAAE-GSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A+Q +FDLAA+  ++D RG L+ +V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 155 HAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = -2

Query: 286 EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 131
           + A A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSAAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>gb|ABK21316.1| unknown [Picea sitchensis] gi|116779793|gb|ABK21432.1| unknown
           [Picea sitchensis] gi|116780291|gb|ABK21621.1| unknown
           [Picea sitchensis] gi|116782013|gb|ABK22335.1| unknown
           [Picea sitchensis] gi|116782043|gb|ABK22345.1| unknown
           [Picea sitchensis] gi|116784459|gb|ABK23350.1| unknown
           [Picea sitchensis] gi|116791697|gb|ABK26075.1| unknown
           [Picea sitchensis] gi|116791715|gb|ABK26082.1| unknown
           [Picea sitchensis] gi|224285486|gb|ACN40464.1| unknown
           [Picea sitchensis] gi|224285621|gb|ACN40529.1| unknown
           [Picea sitchensis]
          Length = 206

 Score =  118 bits (295), Expect = 1e-24
 Identities = 62/111 (55%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           D+RGTLLLL L PAI WVL+NIL+PALNQ+NRM+ A  +             F    E+A
Sbjct: 96  DSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA-GLVAFAGLGAAGGAAFLSNPEEA 154

Query: 277 KAQQALFDLAAE-GSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A+Q +FDLAA+  ++D RG L+ +V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 155 HAEQLVFDLAAKAANNDNRGLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 30/52 (57%), Positives = 38/52 (73%)
 Frame = -2

Query: 286 EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 131
           + A A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSAAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>ref|XP_003601864.1| Photosystem II core complex proteins psbY [Medicago truncatula]
           gi|355490912|gb|AES72115.1| Photosystem II core complex
           proteins psbY [Medicago truncatula]
          Length = 193

 Score =  117 bits (294), Expect = 2e-24
 Identities = 63/111 (56%), Positives = 77/111 (69%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRGTLLL V+ PAIGWVLFNIL+PALNQ+NRMR+AK V                 +E +
Sbjct: 84  DNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRNAKGVIVGLGLGLGGLAASGMVSEAS 143

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            ++  L   AA G SD RG L+  V+APA+ WVL+NILQPALNQ+NRMRS+
Sbjct: 144 ASEIGLIADAAAG-SDNRGTLLLFVVAPAILWVLYNILQPALNQINRMRSD 193



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = -2

Query: 304 VFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           +FS  A  + A  A   +A     D RG L+  V+APA+GWVLFNILQPALNQ+NRMR+
Sbjct: 61  IFSSLAT-SDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRN 118


>gb|AFK43145.1| unknown [Medicago truncatula]
          Length = 197

 Score =  117 bits (294), Expect = 2e-24
 Identities = 63/111 (56%), Positives = 77/111 (69%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRGTLLL V+ PAIGWVLFNIL+PALNQ+NRMR+AK V                 +E +
Sbjct: 88  DNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRNAKGVIVGLGLGLGGLAASGMVSEAS 147

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            ++  L   AA G SD RG L+  V+APA+ WVL+NILQPALNQ+NRMRS+
Sbjct: 148 ASEIGLIADAAAG-SDNRGTLLLFVVAPAILWVLYNILQPALNQINRMRSD 197



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = -2

Query: 304 VFSPYAEDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           +FS  A  + A  A   +A     D RG L+  V+APA+GWVLFNILQPALNQ+NRMR+
Sbjct: 65  IFSSLAT-SDAAFAAQQIAEIAEGDNRGTLLLFVVAPAIGWVLFNILQPALNQINRMRN 122


>gb|AFW61341.1| photosystem II core complex protein psbY [Zea mays]
          Length = 196

 Score =  117 bits (293), Expect = 2e-24
 Identities = 64/116 (55%), Positives = 77/116 (66%), Gaps = 5/116 (4%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG LLL V+ PAIGWVL+NIL+PALNQLNRMRS   V              +P A  A
Sbjct: 81  DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASAA 140

Query: 277 KAQQALFDLAAEGSS-----DGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A Q L  LAA  ++     D RG L+ +V+ PA+GWVLFNILQPALNQ+NRM+S+
Sbjct: 141 AAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVLFNILQPALNQINRMKSD 196



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
 Frame = -2

Query: 289 AEDAKAQQALFDLAA--EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           ++ A A Q + D+AA  +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 60  SDAALAAQRVADVAAAADSGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 115


>ref|NP_001147739.1| photosystem II core complex proteins psbY [Zea mays]
           gi|195613400|gb|ACG28530.1| photosystem II core complex
           proteins psbY [Zea mays]
          Length = 196

 Score =  117 bits (293), Expect = 2e-24
 Identities = 64/116 (55%), Positives = 77/116 (66%), Gaps = 5/116 (4%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG LLL V+ PAIGWVL+NIL+PALNQLNRMRS   V              +P A  A
Sbjct: 81  DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASAA 140

Query: 277 KAQQALFDLAAEGSS-----DGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A Q L  LAA  ++     D RG L+ +V+ PA+GWVLFNILQPALNQ+NRM+S+
Sbjct: 141 AAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVLFNILQPALNQINRMKSD 196



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
 Frame = -2

Query: 289 AEDAKAQQALFDLAA--EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           ++ A A Q + D+AA  +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 60  SDAALAAQRVADVAAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 115


>gb|AFW74395.1| hypothetical protein ZEAMMB73_053443, partial [Zea mays]
          Length = 184

 Score =  116 bits (290), Expect = 5e-24
 Identities = 63/113 (55%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFS--PYAE 284
           D+RG LLL+V+ PAIGWVL+NIL+PALNQLNRMRS+++V              +  P A 
Sbjct: 72  DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAAGMAAPPEAS 131

Query: 283 DAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A  Q      AA  + D RG L+ +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 132 AAVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 184



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 32/48 (66%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = -2

Query: 265 ALFDLAA-EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
           AL D+AA +   D RG L+ +V+APA+GWVL+NILQPALNQLNRMRS+
Sbjct: 60  ALADVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSS 107


>ref|NP_001147385.1| photosystem II core complex proteins psbY [Zea mays]
           gi|195610810|gb|ACG27235.1| photosystem II core complex
           proteins psbY [Zea mays] gi|413941745|gb|AFW74394.1|
           photosystem II core complex protein psbY [Zea mays]
          Length = 191

 Score =  116 bits (290), Expect = 5e-24
 Identities = 63/113 (55%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFS--PYAE 284
           D+RG LLL+V+ PAIGWVL+NIL+PALNQLNRMRS+++V              +  P A 
Sbjct: 79  DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAAGMAAPPEAS 138

Query: 283 DAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A  Q      AA  + D RG L+ +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 139 AAVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 191



 Score = 65.9 bits (159), Expect = 7e-09
 Identities = 32/48 (66%), Positives = 40/48 (83%), Gaps = 1/48 (2%)
 Frame = -2

Query: 265 ALFDLAA-EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
           AL D+AA +   D RG L+ +V+APA+GWVL+NILQPALNQLNRMRS+
Sbjct: 67  ALADVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSS 114


>gb|AFK46434.1| unknown [Lotus japonicus]
          Length = 205

 Score =  115 bits (289), Expect = 6e-24
 Identities = 65/114 (57%), Positives = 76/114 (66%), Gaps = 4/114 (3%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSP--YAE 284
           DNRG  LLL L PAI WVLFNIL+PALNQ+NRMR+ K V              S   +A 
Sbjct: 91  DNRGLALLLPLIPAIVWVLFNILQPALNQINRMRNTKGVIVGLGLGLGGLAAGSGMLWAP 150

Query: 283 DAKAQQA--LFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           +A A +   + D AA G SD RG L+  V+APA+GWVLFNILQPALNQ+NRMRS
Sbjct: 151 EASAGELGIIADAAAAGGSDNRGQLLLFVVAPAIGWVLFNILQPALNQINRMRS 204


>ref|NP_001240940.1| uncharacterized protein LOC100779397 [Glycine max]
           gi|255646582|gb|ACU23765.1| unknown [Glycine max]
          Length = 187

 Score =  115 bits (289), Expect = 6e-24
 Identities = 62/110 (56%), Positives = 73/110 (66%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG  LLL + PAIGWVLFNIL+PALNQLNRMRS K V              +P+A  A
Sbjct: 83  DNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLGLGGLAGLAAAPHAWAA 142

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            ++      AA  +SD RG L+  V+ PA+ WVL+NILQPALNQLNRMRS
Sbjct: 143 ASE------AAAAASDNRGQLLLFVVTPAIAWVLYNILQPALNQLNRMRS 186



 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 34/64 (53%), Positives = 40/64 (62%)
 Frame = -2

Query: 280 AKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIAEIQ 101
           A A Q + D+A     D RG  + L + PA+GWVLFNILQPALNQLNRMRS    I  + 
Sbjct: 70  AFAVQQIADIA---EGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLG 126

Query: 100 FGPL 89
            G L
Sbjct: 127 LGGL 130


>ref|XP_004972988.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Setaria italica]
          Length = 197

 Score =  115 bits (288), Expect = 8e-24
 Identities = 64/114 (56%), Positives = 77/114 (67%), Gaps = 3/114 (2%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG LLL V+ PAIGWVL+NIL+PALNQLNRMRS   +              +   E +
Sbjct: 84  DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVIAGVGLGAAATAAGMACAPEAS 143

Query: 277 KAQQALFDLAAEGSS---DGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A Q L  LAA  ++   D RG L+ +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 144 AAVQDLAALAAAAAAPADDNRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 197



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/55 (61%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 289 AEDAKAQQALFDLAA-EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           ++ A A Q + D+AA +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 64  SDAALAAQRVADVAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 118


>ref|XP_002444967.1| hypothetical protein SORBIDRAFT_07g002060 [Sorghum bicolor]
           gi|241941317|gb|EES14462.1| hypothetical protein
           SORBIDRAFT_07g002060 [Sorghum bicolor]
          Length = 203

 Score =  115 bits (287), Expect = 1e-23
 Identities = 66/114 (57%), Positives = 77/114 (67%), Gaps = 3/114 (2%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFS--PYAE 284
           DNRG LLL V+ PAIGWVL+NIL+PALNQLNRMRS   V              +  P A 
Sbjct: 90  DNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAATAAGMASPPEAS 149

Query: 283 DAKAQQALFDLAAEG-SSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A + Q L  LAA   + D RG L+ +V+APA+GWVLFNILQPALNQLNRMRS+
Sbjct: 150 AAASVQDLAALAAAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRSD 203



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
 Frame = -2

Query: 280 AKAQQALFDLAA--EGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
           A +  AL D+AA  +  SD RG L+  V+APA+GWVL+NILQPALNQLNRMRS
Sbjct: 72  ASSDAALADVAAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRS 124


>gb|ACN39867.1| unknown [Picea sitchensis]
          Length = 206

 Score =  115 bits (287), Expect = 1e-23
 Identities = 61/111 (54%), Positives = 79/111 (71%), Gaps = 1/111 (0%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           D+RGTLLLL L PAI WVL+NIL+PALNQ+NRM+ A  +             F    E+A
Sbjct: 96  DSRGTLLLLPLVPAIAWVLYNILQPALNQINRMKGA-GLVAFAGLGAAGGAAFLSNPEEA 154

Query: 277 KAQQALFDLAAE-GSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A+Q +FDLAA+  ++D R  L+ +V+ PA+GWVLFNILQPALNQ+N+MRS
Sbjct: 155 HAEQLVFDLAAKAANNDNRRLLLLIVVIPAIGWVLFNILQPALNQINKMRS 205



 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 29/52 (55%), Positives = 37/52 (71%)
 Frame = -2

Query: 286 EDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMR 131
           +   A Q + +LAA   SD RG L+ L L PA+ WVL+NILQPALNQ+NRM+
Sbjct: 81  DSTAAAQEVMELAA---SDSRGTLLLLPLVPAIAWVLYNILQPALNQINRMK 129


>ref|XP_002515034.1| photosystem II core complex proteins psbY, chloroplast precursor
           [Ricinus communis] gi|223546085|gb|EEF47588.1|
           photosystem II core complex proteins psbY, chloroplast
           precursor [Ricinus communis]
          Length = 195

 Score =  115 bits (287), Expect = 1e-23
 Identities = 60/110 (54%), Positives = 74/110 (67%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG  LLL + PA+GWVLFNILRPALNQ+NRMR  K V             F   A +A
Sbjct: 86  DNRGLALLLPIIPALGWVLFNILRPALNQINRMRETKGVIIGLGLGGLAATGFMAAAPEA 145

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A + +  + A+ +SD RG L+  V+APA+ WVL+NILQPALNQ+NRMRS
Sbjct: 146 SASENI-AMIADAASDNRGQLLLFVVAPAILWVLYNILQPALNQINRMRS 194


>ref|XP_004142959.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Cucumis sativus]
           gi|449494514|ref|XP_004159566.1| PREDICTED: photosystem
           II core complex proteins psbY, chloroplastic-like
           [Cucumis sativus]
          Length = 253

 Score =  114 bits (285), Expect = 2e-23
 Identities = 64/110 (58%), Positives = 73/110 (66%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG  LLL L PA+ WVLFNIL+PALNQ+NRMRS K V             F  YA DA
Sbjct: 145 DNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFM-YAPDA 203

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRS 128
            A +    +A   SSD RG L+  V+APA+ WVL+NILQPALNQLNRMRS
Sbjct: 204 SASEIAM-IADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRS 252



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = -2

Query: 289 AEDAKAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQIA 110
           ++ A A Q + ++AA+G  D RG  + L L PAV WVLFNILQPALNQ+NRMRS+   I 
Sbjct: 128 SDPAFAAQQIAEIAADG--DNRGLALLLPLIPAVAWVLFNILQPALNQINRMRSDKGVII 185

Query: 109 EIQFGPL 89
            +  G L
Sbjct: 186 GLGLGGL 192


>ref|XP_003573314.1| PREDICTED: photosystem II core complex proteins psbY,
           chloroplastic-like [Brachypodium distachyon]
          Length = 198

 Score =  114 bits (284), Expect = 2e-23
 Identities = 59/111 (53%), Positives = 74/111 (66%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG LLL+V++PA+ WVL+NIL+PALNQLN+MRS K++                 A  A
Sbjct: 88  DNRGLLLLIVVSPALAWVLYNILQPALNQLNKMRSEKALVAGLGLGAAMAAAAPERASAA 147

Query: 277 KAQQALFDLAAEGSSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
             + A    AA  + D RG L+  V+APA+GWVLFNILQPALNQL +MRSN
Sbjct: 148 AGEIAAMAAAAAPADDNRGLLLLFVVAPALGWVLFNILQPALNQLEKMRSN 198



 Score = 62.4 bits (150), Expect = 8e-08
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = -2

Query: 289 AEDAKAQQALFDLAAEG-SSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQI 113
           ++ A A Q + D+AA   + D RG L+ +V++PA+ WVL+NILQPALNQLN+MRS    +
Sbjct: 68  SDAAMAAQRVADMAAAAPADDNRGLLLLIVVSPALAWVLYNILQPALNQLNKMRSEKALV 127

Query: 112 AEIQFG 95
           A +  G
Sbjct: 128 AGLGLG 133


>dbj|BAJ98138.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326494406|dbj|BAJ90472.1| predicted protein [Hordeum
           vulgare subsp. vulgare] gi|326515886|dbj|BAJ87966.1|
           predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 205

 Score =  113 bits (283), Expect = 3e-23
 Identities = 63/113 (55%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
 Frame = -2

Query: 457 DNRGTLLLLVLTPAIGWVLFNILRPALNQLNRMRSAKSVXXXXXXXXXXXGVFSPYAEDA 278
           DNRG LLL V+ PA+GWVL+NIL+PALNQLN+MRS K++              +   E A
Sbjct: 93  DNRGLLLLFVVAPALGWVLYNILQPALNQLNKMRSEKALVAGLGIGAAAAAGLAAVPEPA 152

Query: 277 KAQ-QALFDLAAEG-SSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN 125
            A  Q L  LAA   + D RG L+  V+APA+GWVL+NILQPALNQLN+MRSN
Sbjct: 153 SAAVQELAALAAVAPADDNRGLLLLFVVAPALGWVLYNILQPALNQLNKMRSN 205



 Score = 65.5 bits (158), Expect = 1e-08
 Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = -2

Query: 289 AEDAKAQQALFDLAAEG-SSDGRGGLIFLVLAPAVGWVLFNILQPALNQLNRMRSN*KQI 113
           ++ A A Q + D+AA   + D RG L+  V+APA+GWVL+NILQPALNQLN+MRS    +
Sbjct: 73  SDAAMASQRIADVAAAAPADDNRGLLLLFVVAPALGWVLYNILQPALNQLNKMRSEKALV 132

Query: 112 AEIQFG 95
           A +  G
Sbjct: 133 AGLGIG 138