BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00000551
         (501 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop...    72   6e-11
ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis...    72   8e-11
dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]        72   8e-11
dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]        72   8e-11
ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidop...    72   8e-11
ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arab...    72   8e-11
ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ri...    71   1e-10
ref|XP_004958419.1| PREDICTED: ribonucleoprotein At2g37220, chlo...    71   2e-10
tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea m...    71   2e-10
ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [S...    71   2e-10
ref|NP_001151728.1| ribonucleoprotein A [Zea mays] gi|195649373|...    71   2e-10
ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chlorop...    70   2e-10
ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group] g...    70   3e-10
ref|XP_006658862.1| PREDICTED: 29 kDa ribonucleoprotein A, chlor...    70   3e-10
ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Caps...    70   3e-10
gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativ...    70   3e-10
gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indi...    70   3e-10
gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus pe...    70   4e-10
gb|EMT07115.1| 29 kDa ribonucleoprotein B, chloroplastic [Aegilo...    69   5e-10
dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgar...    69   5e-10

>ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus] gi|449483348|ref|XP_004156563.1| PREDICTED: 29
           kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 278

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 39/62 (62%), Positives = 43/62 (69%), Gaps = 4/62 (6%)
 Frame = -3

Query: 175 QERNQLPPVMDDSGY----KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSR 8
           QE   L    DDS Y    KLFVGNL + VDS QLAGLF+ AG+V  VEVIYD+ TGRSR
Sbjct: 75  QEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGRSR 134

Query: 7   GF 2
           GF
Sbjct: 135 GF 136


>ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
           gi|186511018|ref|NP_850692.2| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa
           ribonucleoprotein, chloroplastic; AltName:
           Full=RNA-binding protein cp29; Flags: Precursor
           gi|6729497|emb|CAB67653.1| RNA-binding protein cp29
           protein [Arabidopsis thaliana]
           gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160
           [Arabidopsis thaliana] gi|18655393|gb|AAL76152.1|
           AT3g53460/F4P12_160 [Arabidopsis thaliana]
           gi|21593426|gb|AAM65393.1| RNA-binding protein cp29
           protein [Arabidopsis thaliana]
           gi|332645568|gb|AEE79089.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|332645569|gb|AEE79090.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
           gi|332645570|gb|AEE79091.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
          Length = 342

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = -3

Query: 172 ERNQLPPVMDDSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           ERN   P +     KLFVGNLS+NVDS QLA LF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 91  ERNSFSPDL-----KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142


>dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
          Length = 326

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = -3

Query: 172 ERNQLPPVMDDSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           ERN   P +     KLFVGNLS+NVDS QLA LF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 83  ERNSFSPDL-----KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 134


>dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
          Length = 334

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = -3

Query: 172 ERNQLPPVMDDSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           ERN   P +     KLFVGNLS+NVDS QLA LF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 91  ERNSFSPDL-----KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142


>ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
           gi|332645571|gb|AEE79092.1| chloroplast RNA-binding
           protein 29 [Arabidopsis thaliana]
          Length = 363

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = -3

Query: 172 ERNQLPPVMDDSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           ERN   P +     KLFVGNLS+NVDS QLA LF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 91  ERNSFSPDL-----KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142


>ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
           lyrata] gi|297323759|gb|EFH54180.1| hypothetical protein
           ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata]
          Length = 339

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/57 (66%), Positives = 42/57 (73%)
 Frame = -3

Query: 172 ERNQLPPVMDDSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           ERN   P +     KLFVGNLS+NVDS QLA LF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 91  ERNSFSPDL-----KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142


>ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223541388|gb|EEF42939.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 280

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 34/43 (79%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL +NVDS QLAGLF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 93  KLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGF 135


>ref|XP_004958419.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like [Setaria
           italica]
          Length = 265

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 79  KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 121



 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 28/47 (59%), Positives = 35/47 (74%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DSG K++VGNLS+ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 178 DSGNKVYVGNLSWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGF 224


>tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
          Length = 267

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 78  KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 120



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DSG K++VGNL++ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 180 DSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGF 226


>ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
           gi|241924453|gb|EER97597.1| hypothetical protein
           SORBIDRAFT_02g040260 [Sorghum bicolor]
          Length = 268

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 79  KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 121



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  K++VGNL++ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGF 227


>ref|NP_001151728.1| ribonucleoprotein A [Zea mays] gi|195649373|gb|ACG44154.1|
           ribonucleoprotein A [Zea mays]
           gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A
           [Zea mays]
          Length = 268

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 80  KLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 122



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  K++VGNL++ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 181 DSANKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGF 227


>ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
           [Brachypodium distachyon]
          Length = 275

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 33/43 (76%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL + VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 85  KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 127



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 29/47 (61%), Positives = 35/47 (74%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DSG KL+VGNLS+ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 186 DSGNKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGF 232


>ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
           gi|22296371|dbj|BAC10140.1| putative 29 kDa
           ribonucleoprotein A, chloroplast precursor [Oryza sativa
           Japonica Group] gi|113611900|dbj|BAF22278.1|
           Os07g0631900 [Oryza sativa Japonica Group]
           gi|125601192|gb|EAZ40768.1| hypothetical protein
           OsJ_25244 [Oryza sativa Japonica Group]
          Length = 264

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           K+FVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 81  KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGF 123



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  KL+VGNL++ VD+  L  LF E G V   +VIYDR +GRSRGF
Sbjct: 177 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGF 223


>ref|XP_006658862.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like, partial
           [Oryza brachyantha]
          Length = 211

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           K+FVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 28  KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGF 70



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  K++VGNLS+ VD+  L  LF E G V   +VIYDR +GRSRGF
Sbjct: 124 DSSNKVYVGNLSWGVDNSTLENLFSEQGNVLDAKVIYDRESGRSRGF 170


>ref|XP_006291486.1| hypothetical protein CARUB_v10017634mg [Capsella rubella]
           gi|482560193|gb|EOA24384.1| hypothetical protein
           CARUB_v10017634mg [Capsella rubella]
          Length = 327

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 34/43 (79%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNLS+NVDS QLA LF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 94  KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 136


>gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
          Length = 205

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           K+FVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 22  KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGF 64



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  KL+VGNL++ VD+  L  LF E G V   +VIYDR +GRSRGF
Sbjct: 118 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGF 164


>gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
          Length = 259

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 32/43 (74%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           K+FVGNL ++VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 76  KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGF 118



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  KL+VGNL++ VD+  L  LF E G V   +VIYDR +GRSRGF
Sbjct: 172 DSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGF 218


>gb|EMJ06843.1| hypothetical protein PRUPE_ppa009295mg [Prunus persica]
          Length = 298

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 33/43 (76%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           KLFVGNL ++VDS QLAGLF+ AG V MVEVIYD+ TGRSRGF
Sbjct: 116 KLFVGNLPFSVDSAQLAGLFESAGNVEMVEVIYDKTTGRSRGF 158


>gb|EMT07115.1| 29 kDa ribonucleoprotein B, chloroplastic [Aegilops tauschii]
          Length = 551

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           K+FVGNL + VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 360 KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 402



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/47 (59%), Positives = 34/47 (72%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  KL+VGNLS+ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 462 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGF 508


>dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
           gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum
           vulgare subsp. vulgare]
          Length = 278

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/43 (74%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 KLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           K+FVGNL + VDS QLAGLF++AG V MVEV+YDR TGRSRGF
Sbjct: 88  KVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGF 130



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/47 (59%), Positives = 34/47 (72%)
 Frame = -3

Query: 142 DSGYKLFVGNLSYNVDSQQLAGLFQEAGEVNMVEVIYDRPTGRSRGF 2
           DS  KL+VGNLS+ VD+  L  LF E G+V   +VIYDR +GRSRGF
Sbjct: 189 DSANKLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGF 235