BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra27_contig00000043
         (739 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [A...    86   1e-14
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...    84   6e-14
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]    84   6e-14
gb|ACG41877.1| RNA binding protein [Zea mays]                          82   1e-13
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor...    82   2e-13
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S...    81   4e-13
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour...    79   2e-12
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor...    79   2e-12
ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chl...    78   3e-12
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g...    77   5e-12
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi...    77   5e-12
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus...    77   6e-12
gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus...    77   6e-12
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl...    77   6e-12
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor...    77   8e-12
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...    75   2e-11
gb|EMS58535.1| RNA pseudourine synthase 2, chloroplastic [Tritic...    75   2e-11
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...    74   4e-11
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl...    74   4e-11
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor...    74   4e-11

>ref|XP_006828851.1| hypothetical protein AMTR_s00001p00157430 [Amborella trichopoda]
           gi|548833830|gb|ERM96267.1| hypothetical protein
           AMTR_s00001p00157430 [Amborella trichopoda]
          Length = 452

 Score = 86.3 bits (212), Expect = 1e-14
 Identities = 34/64 (53%), Positives = 51/64 (79%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           SRL+ + PS YHG +S+++S+++RPCLHA+SLGF+HP + E VLF+CPPP DF +VL   
Sbjct: 369 SRLRPRTPSHYHGPLSQLVSNLQRPCLHAFSLGFKHPHSKENVLFTCPPPPDFAEVLRQL 428

Query: 183 RKLK 194
           + ++
Sbjct: 429 QSIR 432


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 31/63 (49%), Positives = 52/63 (82%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ ++PS +HG++++++S ++RPCLHA +LGF HP+TG+ V FSC PP+DF ++L++ 
Sbjct: 361 SLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWL 420

Query: 183 RKL 191
           RK+
Sbjct: 421 RKI 423


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score = 83.6 bits (205), Expect = 6e-14
 Identities = 31/63 (49%), Positives = 52/63 (82%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ ++PS +HG++++++S ++RPCLHA +LGF HP+TG+ V FSC PP+DF ++L++ 
Sbjct: 507 SLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFNHPKTGKNVHFSCQPPEDFAEILSWL 566

Query: 183 RKL 191
           RK+
Sbjct: 567 RKI 569


>gb|ACG41877.1| RNA binding protein [Zea mays]
          Length = 439

 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 34/63 (53%), Positives = 49/63 (77%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + PSKYH  +S ++S ++RPCLHA SLGF+HPR+G+ + FSCPPP DF++VL   
Sbjct: 364 SLLRPRSPSKYHSGLSNLLSKVDRPCLHAASLGFKHPRSGKVLEFSCPPPDDFLEVLGEL 423

Query: 183 RKL 191
           R++
Sbjct: 424 RRV 426


>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
           [Brachypodium distachyon]
          Length = 439

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 34/63 (53%), Positives = 49/63 (77%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + PS+YHG++S +IS I+RPCLHA  LGF+HP +G+ + FSCPPP DF +VL+  
Sbjct: 361 SLLRPRTPSRYHGDLSNLISKIDRPCLHAALLGFKHPHSGKMLEFSCPPPDDFAEVLDEL 420

Query: 183 RKL 191
           R++
Sbjct: 421 RRV 423


>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
           gi|241917257|gb|EER90401.1| hypothetical protein
           SORBIDRAFT_10g030300 [Sorghum bicolor]
          Length = 441

 Score = 80.9 bits (198), Expect = 4e-13
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + PSKYH ++S +IS ++RPCLHA  LGF+HP +G+ + FSCPPP DF +VL+  
Sbjct: 367 SLLRPRTPSKYHSDLSNLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDEL 426

Query: 183 RKL 191
           RK+
Sbjct: 427 RKV 429


>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
           chloroplastic-like [Cucumis sativus]
          Length = 452

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 31/63 (49%), Positives = 47/63 (74%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ +  S  HG++ +++SS+ERPCLHA +LGF HP TG+ + FSCPPP DF ++L+  
Sbjct: 359 SLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQL 418

Query: 183 RKL 191
           R++
Sbjct: 419 REI 421


>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
           sativus]
          Length = 453

 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 31/63 (49%), Positives = 47/63 (74%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ +  S  HG++ +++SS+ERPCLHA +LGF HP TG+ + FSCPPP DF ++L+  
Sbjct: 360 SLLRTRASSNCHGQLMQLVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQL 419

Query: 183 RKL 191
           R++
Sbjct: 420 REI 422


>ref|XP_004966473.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Setaria italica]
          Length = 437

 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 36/74 (48%), Positives = 50/74 (67%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + PSKYH  +S +IS ++RPCLHA  LGF+HP +G+ + FSCPPP DF +VL+  
Sbjct: 362 SLLRPRTPSKYHSGLSDLISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLDEL 421

Query: 183 RKLKGVC*SPQTGD 224
           R++       Q GD
Sbjct: 422 RRVTSA--DGQNGD 433


>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
           gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
           pseudouridine synthase 2, chloroplastic; AltName:
           Full=RNA pseudouridylate synthase 2; AltName:
           Full=RNA-uridine isomerase 2; Flags: Precursor
           gi|53791796|dbj|BAD53590.1| ribosomal large subunit
           pseudouridine synthase-like [Oryza sativa Japonica
           Group] gi|54291043|dbj|BAD61720.1| ribosomal large
           subunit pseudouridine synthase-like [Oryza sativa
           Japonica Group] gi|113596634|dbj|BAF20508.1|
           Os06g0717400 [Oryza sativa Japonica Group]
           gi|215706335|dbj|BAG93191.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222636236|gb|EEE66368.1| hypothetical protein
           OsJ_22675 [Oryza sativa Japonica Group]
          Length = 445

 Score = 77.4 bits (189), Expect = 5e-12
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLN 176
           S L+ + PS+YH ++S +IS I+RPCLHA  LGF+HP +G+ + FSCPPP DF +VLN
Sbjct: 366 SLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLN 423


>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
          Length = 445

 Score = 77.4 bits (189), Expect = 5e-12
 Identities = 33/58 (56%), Positives = 45/58 (77%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLN 176
           S L+ + PS+YH ++S +IS I+RPCLHA  LGF+HP +G+ + FSCPPP DF +VLN
Sbjct: 366 SLLRPRTPSRYHCDLSNMISKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLN 423


>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 447

 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + P   HG+I +++SS++RPCLHA +LGF+HP TGE+V FSC PP DF ++L+  
Sbjct: 372 SLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQL 431

Query: 183 RKL 191
           R++
Sbjct: 432 RRI 434


>gb|ESW08113.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
          Length = 458

 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + P   HG+I +++SS++RPCLHA +LGF+HP TGE+V FSC PP DF ++L+  
Sbjct: 383 SLLRPRSPISLHGKIVQMVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQL 442

Query: 183 RKL 191
           R++
Sbjct: 443 RRI 445


>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
           X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
           PREDICTED: RNA pseudouridine synthase 2,
           chloroplastic-like isoform X2 [Glycine max]
          Length = 450

 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 31/63 (49%), Positives = 47/63 (74%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ + P   H +I K++S ++RPCLHA++LGF+HP TGE+V FSC PP DF ++L+  
Sbjct: 375 SLLRPRTPISLHSKIVKMVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQL 434

Query: 183 RKL 191
           R++
Sbjct: 435 RRI 437


>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
           arietinum]
          Length = 438

 Score = 76.6 bits (187), Expect = 8e-12
 Identities = 31/63 (49%), Positives = 47/63 (74%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ +     HGE++K++S ++RPCLHA +LGF+HP TGE+V FSC PP DF ++L+  
Sbjct: 373 SLLRPRTTPSLHGEMTKMVSELDRPCLHAMTLGFQHPHTGEQVHFSCEPPVDFNEILSQL 432

Query: 183 RKL 191
           R++
Sbjct: 433 RRI 435


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
           brachyantha]
          Length = 442

 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 32/63 (50%), Positives = 47/63 (74%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ +  S+YH ++S +I+ I+RPCLHA  LGF+HP +G+ + FSCPPP DF +VLN  
Sbjct: 364 SLLRPRTSSRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNEL 423

Query: 183 RKL 191
           R++
Sbjct: 424 RRV 426


>gb|EMS58535.1| RNA pseudourine synthase 2, chloroplastic [Triticum urartu]
          Length = 485

 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 30/55 (54%), Positives = 43/55 (78%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMD 167
           S L+ + PSKYHG+++ ++S I+RPCLHA  LGF+HP +G+ + FSCPPP DF +
Sbjct: 323 SLLRPRTPSKYHGDLTNLVSKIDRPCLHAALLGFKHPHSGKVLEFSCPPPDDFTE 377


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
           sinensis]
          Length = 421

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 28/52 (53%), Positives = 41/52 (78%)
 Frame = +3

Query: 36  HGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYFRKL 191
           HG++ K++S ++RPCLHA +LGF HP T EK+ FSCPPP DF ++L+  R++
Sbjct: 362 HGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREI 413


>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Solanum tuberosum]
          Length = 431

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 31/63 (49%), Positives = 46/63 (73%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ K P  +HG++S+++S I+RPCLHA +LGF HP TGE + F+  PP DF ++L+Y 
Sbjct: 363 SLLQPKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYL 422

Query: 183 RKL 191
           R +
Sbjct: 423 RAI 425


>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
           lycopersicum]
          Length = 436

 Score = 74.3 bits (181), Expect = 4e-11
 Identities = 32/64 (50%), Positives = 46/64 (71%)
 Frame = +3

Query: 3   SRLKCKLPSKYHGEISKVISSIERPCLHAYSLGFEHPRTGEKVLFSCPPPQDFMDVLNYF 182
           S L+ K P  +HGE+S+++S I+RPCLHA +LGF HP TGE + F+  PP DF ++L+  
Sbjct: 363 SLLQPKTPPMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSEL 422

Query: 183 RKLK 194
           R +K
Sbjct: 423 RAIK 426