BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00026634
         (876 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73912.1| polyprotein [Citrus sinensis]                           68   4e-09
gb|AFB73911.1| polyprotein [Citrus sinensis]                           68   5e-09
gb|EFN68697.1| Retrovirus-related Pol polyprotein from transposo...    64   1e-07
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]               62   3e-07
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]               62   3e-07
ref|XP_003381524.1| putative integrase core domain protein [Tric...    60   1e-06
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]               60   1e-06
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi...    57   9e-06

>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 68.2 bits (165), Expect = 4e-09
 Identities = 37/120 (30%), Positives = 64/120 (53%)
 Frame = -1

Query: 360 NYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTPHIDGQ 181
           N+  WK+KM  +L+ NN L  I   P    +D W + ++ A   + L+L+D +   +  +
Sbjct: 14  NFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDSNAISDLHLALADGVLSSVAEK 73

Query: 180 NSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQILAQGEN 1
           N+A  +W TL  +++ K+      LK K+ TLR+ E + VT+ I  + +L  Q+   G N
Sbjct: 74  NTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHN 133


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score = 67.8 bits (164), Expect = 5e-09
 Identities = 37/120 (30%), Positives = 63/120 (52%)
 Frame = -1

Query: 360 NYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTPHIDGQ 181
           N+  WK+KM  +L+ NN L  I   P    +D W + +  A   + L+L+D +   +  +
Sbjct: 14  NFSLWKMKMKAVLRKNNCLAAIGERPMEITDDKWNEVDGNAISDLHLALADGVLSSVAEK 73

Query: 180 NSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQILAQGEN 1
           N+A  +W TL  +++ K+      LK K+ TLR+ E + VT+ I  + +L  Q+   G N
Sbjct: 74  NTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTDHINTLKTLFSQLTTLGHN 133


>gb|EFN68697.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Camponotus floridanus]
          Length = 143

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 33/124 (26%), Positives = 63/124 (50%)
 Frame = -1

Query: 375 LLTNQNYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTP 196
           LL   NY  WK K+  IL  ++L D++  P PV  ND W K+NN A   I+L++ D    
Sbjct: 6   LLNGGNYVFWKTKVRAILVRDDLWDVVNEPKPVQLNDAWTKRNNKAMACITLNVEDNQLI 65

Query: 195 HIDGQNSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQIL 16
           H    ++A+ +WQ  +  +++  +     L+ K+ ++       +++ I A++ +   + 
Sbjct: 66  HFAHLDNAFDVWQAFSRKYERSTFGSRLYLRRKLYSIHY-RSGAMSDHIDAIIEVVGLLR 124

Query: 15  AQGE 4
             G+
Sbjct: 125 GSGK 128


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 33/117 (28%), Positives = 66/117 (56%)
 Frame = -1

Query: 363 QNYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTPHIDG 184
           +N+  WK+K+  IL+ +N LD I   P    ++ W + ++ A  ++ L+++D +   I  
Sbjct: 13  RNFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAE 72

Query: 183 QNSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQILA 13
           + +A  +W TL  +++ K+      LK ++ TLR+ E ++VT+ I  + +L  Q+ A
Sbjct: 73  KKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTA 129


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 33/117 (28%), Positives = 66/117 (56%)
 Frame = -1

Query: 363 QNYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTPHIDG 184
           +N+  WK+K+  IL+ +N LD I   P    ++ W + ++ A  ++ L+++D +   I  
Sbjct: 13  RNFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAE 72

Query: 183 QNSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQILA 13
           + +A  +W TL  +++ K+      LK ++ TLR+ E ++VT+ I  + +L  Q+ A
Sbjct: 73  KKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTA 129


>ref|XP_003381524.1| putative integrase core domain protein [Trichinella spiralis]
           gi|316979667|gb|EFV62422.1| putative integrase core
           domain protein [Trichinella spiralis]
          Length = 1133

 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 34/124 (27%), Positives = 60/124 (48%)
 Frame = -1

Query: 372 LTNQNYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTPH 193
           L + NY  WK+KM  +L  + L D++  P P    ++W +K   A  +I L++ D+   H
Sbjct: 18  LNSSNYQLWKLKMKVLLMRDGLWDLVSQPKPCPIPEDWSRKECKAIAAICLTVEDDQLIH 77

Query: 192 IDGQNSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQILA 13
           +    +A  MWQTL  + ++ +      L  K+  +R     T+   I  +L +  Q+  
Sbjct: 78  LAQLETAREMWQTLQRLHERASIGSKLYLMRKLYGMRFTH-GTMKSHINGILEIVTQLRG 136

Query: 12  QGEN 1
            G+N
Sbjct: 137 LGKN 140


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 32/117 (27%), Positives = 65/117 (55%)
 Frame = -1

Query: 363 QNYHSWKVKMSNILKGNNLLDIIPFPPPVNRNDNWIKKNNFAAMSISLSLSDELTPHIDG 184
           + +  WK+K+  IL+ +N LD I   P    ++ W + ++ A  ++ L+++D +   I  
Sbjct: 13  RKFSLWKLKIRAILRKDNCLDAIDGRPADITDEKWKEMDDNAVANLHLAMADSVLSSIAE 72

Query: 183 QNSAYHMWQTLANIFDKKNYAKLRTLKDKINTLRLPEDSTVTELIAAVLSLQKQILA 13
           + +A  +W TL  +++ K+      LK ++ TLR+ E ++VT+ I  + +L  Q+ A
Sbjct: 73  KKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTA 129


>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1499

 Score = 57.0 bits (136), Expect = 9e-06
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
 Frame = -1

Query: 375 LLTNQNYHSWKVKMSNILKGNNLLDII-----------PFPPPVNRNDNWIKKNNFAAMS 229
           +   ++Y  WK+KM  ILK   L D+I             P      D+ + K+  A   
Sbjct: 11  IFNGESYGFWKIKMITILKTRKLWDVIENGVTSNSSPETSPALTRERDDQVMKDMMALQI 70

Query: 228 ISLSLSDELTPHIDGQNSAYHMWQTLANIFDKKNYAK---LRTLKDKINTLRLPEDSTVT 58
           +  ++SD + P I   +SA   W  L   F   +  K   L+TL+ +   L++ E  T+ 
Sbjct: 71  LQSAVSDSIFPRIAPASSATEAWNALEMEFQGSSQVKMINLQTLRREYENLKMEEGETIN 130

Query: 57  ELIAAVLSLQKQILAQGE 4
           +    +++L  Q+   GE
Sbjct: 131 DFTTKLINLSNQLRVHGE 148