BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00026501
         (549 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE75749.1| unknown [Picea sitchensis]                              94   3e-17
ref|XP_002967805.1| hypothetical protein SELMODRAFT_440021 [Sela...    84   2e-14
ref|XP_002981721.1| hypothetical protein SELMODRAFT_421246 [Sela...    84   2e-14
ref|XP_001783243.1| predicted protein [Physcomitrella patens] gi...    81   1e-13
ref|XP_006843762.1| hypothetical protein AMTR_s00007p00238780 [A...    69   6e-10
gb|AAT08661.1| single-stranded DNA-binding replication protein A...    63   5e-08
gb|ACR37769.1| unknown [Zea mays] gi|413939585|gb|AFW74136.1| hy...    61   2e-07
gb|ACG31701.1| replication protein A 32 kDa subunit [Zea mays]         61   2e-07
ref|NP_001140245.1| uncharacterized protein LOC100272286 [Zea ma...    61   2e-07
gb|ACF80654.1| unknown [Zea mays] gi|413939586|gb|AFW74137.1| re...    61   2e-07
ref|XP_002468676.1| hypothetical protein SORBIDRAFT_01g050092 [S...    61   2e-07
ref|XP_002502941.1| predicted protein [Micromonas sp. RCC299] gi...    59   6e-07
ref|NP_001152264.1| OB-fold nucleic acid binding domain containi...    59   6e-07
ref|XP_002282796.1| PREDICTED: replication factor A protein 2 [V...    59   1e-06
ref|XP_006845815.1| hypothetical protein AMTR_s00019p00256940 [A...    58   2e-06
ref|XP_005651058.1| replication protein A, subunit RPA32 [Coccom...    58   2e-06
ref|XP_002740859.2| PREDICTED: replication protein A 32 kDa subu...    57   2e-06
ref|XP_002454830.1| hypothetical protein SORBIDRAFT_04g038190 [S...    57   2e-06
dbj|BAB40535.1| replication protein A 30kDa [Oryza sativa Japoni...    56   5e-06
ref|XP_006450138.1| hypothetical protein CICLE_v10009139mg [Citr...    56   7e-06

>gb|ADE75749.1| unknown [Picea sitchensis]
          Length = 281

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
 Frame = -1

Query: 543 PPSGLPHA-QQNSYTSPAFDRSGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGY 367
           PP+   +    N + SP     GG+KDL   V+ IF+EP +   E GVH+D++ RRL G+
Sbjct: 190 PPTPFSNTPSHNQFMSPGPVSVGGAKDLNRMVQSIFEEPANLAIEHGVHVDDVVRRLHGF 249

Query: 366 SRQQIMDAITFLSNDGAIYSTIGDDHFKSTNG 271
           +++QIM++I FL N+G IYSTI +DH+KSTNG
Sbjct: 250 TKKQIMESIAFLINEGYIYSTIDEDHYKSTNG 281


>ref|XP_002967805.1| hypothetical protein SELMODRAFT_440021 [Selaginella moellendorffii]
           gi|300164543|gb|EFJ31152.1| hypothetical protein
           SELMODRAFT_440021 [Selaginella moellendorffii]
          Length = 279

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
 Frame = -1

Query: 513 NSYTSPAFD-RSGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAIT 337
           N Y +PA    S G  +   +V+ +F+EP     EQG+H+DEI RR+ G+S++Q+ DA+ 
Sbjct: 197 NPYATPAAPANSNGMSECQRRVQAVFEEPSVKESEQGLHVDEIARRITGFSKKQVRDAVE 256

Query: 336 FLSNDGAIYSTIGDDHFKSTN 274
           FL N+G +YST+ D+HFKSTN
Sbjct: 257 FLVNEGYVYSTVDDEHFKSTN 277


>ref|XP_002981721.1| hypothetical protein SELMODRAFT_421246 [Selaginella moellendorffii]
           gi|300150553|gb|EFJ17203.1| hypothetical protein
           SELMODRAFT_421246 [Selaginella moellendorffii]
          Length = 279

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 38/81 (46%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
 Frame = -1

Query: 513 NSYTSPAFD-RSGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAIT 337
           N Y +PA    S G  +   +V+ +F+EP     EQG+H+DEI RR+ G+S++Q+ DA+ 
Sbjct: 197 NPYATPAAPANSNGMSECQRRVQAVFEEPSVKESEQGLHVDEIARRITGFSKKQVRDAVE 256

Query: 336 FLSNDGAIYSTIGDDHFKSTN 274
           FL N+G +YST+ D+HFKSTN
Sbjct: 257 FLVNEGYVYSTVDDEHFKSTN 277


>ref|XP_001783243.1| predicted protein [Physcomitrella patens]
           gi|162665247|gb|EDQ51938.1| predicted protein
           [Physcomitrella patens]
          Length = 285

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 37/91 (40%), Positives = 56/91 (61%)
 Frame = -1

Query: 543 PPSGLPHAQQNSYTSPAFDRSGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYS 364
           P +G+    +    S A    G  ++   +V  I++EP     EQG+H+D++ +R+ G++
Sbjct: 195 PQNGMYTPVKTPIASSAIPAGGAKEECQRRVHSIYEEPASLQVEQGLHVDQVVQRMVGFT 254

Query: 363 RQQIMDAITFLSNDGAIYSTIGDDHFKSTNG 271
           R Q+ +AI FL N+G IYSTI DDH KSTNG
Sbjct: 255 RAQVREAIDFLVNEGYIYSTIDDDHHKSTNG 285


>ref|XP_006843762.1| hypothetical protein AMTR_s00007p00238780 [Amborella trichopoda]
           gi|548846130|gb|ERN05437.1| hypothetical protein
           AMTR_s00007p00238780 [Amborella trichopoda]
          Length = 278

 Score = 69.3 bits (168), Expect = 6e-10
 Identities = 30/67 (44%), Positives = 46/67 (68%)
 Frame = -1

Query: 480 GGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYSTI 301
           G   D+  +V+ +F EP     ++G+H+DE+ +RLPG S+Q+IM AI FL  +G IYSTI
Sbjct: 208 GSEDDINTRVKKVFMEPDALKNDEGLHVDEVAQRLPGISKQRIMKAIDFLVGEGEIYSTI 267

Query: 300 GDDHFKS 280
            D ++K+
Sbjct: 268 NDYYYKA 274


>gb|AAT08661.1| single-stranded DNA-binding replication protein A [Hyacinthus
           orientalis]
          Length = 88

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = -1

Query: 483 SGGSK-DLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYS 307
           +GGS+ D+++ V D+F EP     + GVH+DE+ +RL G   ++I +AI +  + G IYS
Sbjct: 20  NGGSETDIYKMVLDVFQEPSSLASDHGVHVDEVVKRL-GLPEKKIKEAIDYHVDTGHIYS 78

Query: 306 TIGDDHFKST 277
           TI D HFK+T
Sbjct: 79  TIDDYHFKAT 88


>gb|ACR37769.1| unknown [Zea mays] gi|413939585|gb|AFW74136.1| hypothetical protein
           ZEAMMB73_174168 [Zea mays]
          Length = 307

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -1

Query: 504 TSPAFDRSGGSK-DLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLS 328
           +SPA   SG S  DL  +V + F+EP +   E GVH+DE+ +R     ++QI DAI +  
Sbjct: 231 SSPAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNM 290

Query: 327 NDGAIYSTIGDDHFKST 277
           + G +YSTI + H+K+T
Sbjct: 291 DSGRLYSTIDEFHYKAT 307


>gb|ACG31701.1| replication protein A 32 kDa subunit [Zea mays]
          Length = 273

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -1

Query: 504 TSPAFDRSGGSK-DLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLS 328
           +SPA   SG S  DL  +V + F+EP +   E GVH+DE+ +R     ++QI DAI +  
Sbjct: 197 SSPAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNM 256

Query: 327 NDGAIYSTIGDDHFKST 277
           + G +YSTI + H+K+T
Sbjct: 257 DSGRLYSTIDEFHYKAT 273


>ref|NP_001140245.1| uncharacterized protein LOC100272286 [Zea mays]
           gi|194698682|gb|ACF83425.1| unknown [Zea mays]
           gi|413939584|gb|AFW74135.1| hypothetical protein
           ZEAMMB73_174168 [Zea mays]
          Length = 188

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -1

Query: 504 TSPAFDRSGGSK-DLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLS 328
           +SPA   SG S  DL  +V + F+EP +   E GVH+DE+ +R     ++QI DAI +  
Sbjct: 112 SSPAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNM 171

Query: 327 NDGAIYSTIGDDHFKST 277
           + G +YSTI + H+K+T
Sbjct: 172 DSGRLYSTIDEFHYKAT 188


>gb|ACF80654.1| unknown [Zea mays] gi|413939586|gb|AFW74137.1| replication protein
           A subunit [Zea mays]
          Length = 273

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -1

Query: 504 TSPAFDRSGGSK-DLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLS 328
           +SPA   SG S  DL  +V + F+EP +   E GVH+DE+ +R     ++QI DAI +  
Sbjct: 197 SSPAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNM 256

Query: 327 NDGAIYSTIGDDHFKST 277
           + G +YSTI + H+K+T
Sbjct: 257 DSGRLYSTIDEFHYKAT 273


>ref|XP_002468676.1| hypothetical protein SORBIDRAFT_01g050092 [Sorghum bicolor]
           gi|241922530|gb|EER95674.1| hypothetical protein
           SORBIDRAFT_01g050092 [Sorghum bicolor]
          Length = 83

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 33/68 (48%), Positives = 41/68 (60%)
 Frame = -1

Query: 483 SGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYST 304
           SG   DL ++V DI  EP +  RE GVH+DEI +R      + I DAI  L + G IY+T
Sbjct: 8   SGSESDLLKQVLDILHEPANIEREHGVHVDEIVKRF-RLPERNIRDAIMQLVDMGCIYNT 66

Query: 303 IGDDHFKS 280
           I D HFKS
Sbjct: 67  IDDFHFKS 74


>ref|XP_002502941.1| predicted protein [Micromonas sp. RCC299]
           gi|226518207|gb|ACO64199.1| predicted protein
           [Micromonas sp. RCC299]
          Length = 250

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
 Frame = -1

Query: 543 PPSGLPHAQQNSY--TSPAFDRSGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPG 370
           P +G  +A  +S   ++PA D  G   D   + + IF+ P    R++GV ID + ++L G
Sbjct: 161 PAAGTAYAAPSSAPASAPAVDPGGSCVD---QAKAIFEGPDGR-RDEGVKIDVVVQQLNG 216

Query: 369 -YSRQQIMDAITFLSNDGAIYSTIGDDHFKSTN 274
            ++  Q+ +A+  L N+G +YSTI DDHFKSTN
Sbjct: 217 RFTEAQVREAVEHLVNEGHLYSTIDDDHFKSTN 249


>ref|NP_001152264.1| OB-fold nucleic acid binding domain containing protein [Zea mays]
           gi|194697154|gb|ACF82661.1| unknown [Zea mays]
           gi|195654425|gb|ACG46680.1| OB-fold nucleic acid binding
           domain containing protein [Zea mays]
           gi|413934694|gb|AFW69245.1| OB-fold nucleic acid binding
           domain containing protein [Zea mays]
          Length = 336

 Score = 59.3 bits (142), Expect = 6e-07
 Identities = 37/89 (41%), Positives = 45/89 (50%)
 Frame = -1

Query: 546 APPSGLPHAQQNSYTSPAFDRSGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGY 367
           AP SG    QQ  +T P     G   DL   V ++  +P     E GVH+DE+ RRL G 
Sbjct: 245 APFSGGVGEQQVHFTQPNQFTGGQQHDLQSMVLEVMQQPDILALENGVHVDEVARRL-GM 303

Query: 366 SRQQIMDAITFLSNDGAIYSTIGDDHFKS 280
            R QIM     L +   +YSTI D HFKS
Sbjct: 304 PRAQIMAIAQRLVDLACLYSTIDDYHFKS 332


>ref|XP_002282796.1| PREDICTED: replication factor A protein 2 [Vitis vinifera]
           gi|296081770|emb|CBI20775.3| unnamed protein product
           [Vitis vinifera]
          Length = 268

 Score = 58.5 bits (140), Expect = 1e-06
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
 Frame = -1

Query: 543 PPSGLPHAQQNSYTSPAFDRSG----GSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRL 376
           P S     +   Y +P+   S     G K L + V D   +P ++ RE+G+H DE++++L
Sbjct: 174 PLSASVKTESTGYQTPSSQLSAQSVDGVKGLDQMVLDYLQQPSNYDREKGIHRDELSQQL 233

Query: 375 PGYSRQQIMDAITFLSNDGAIYSTIGDDHFKST 277
              S ++IM++I  L  +G IYSTI + H+KST
Sbjct: 234 K-ISTEKIMESIRTLEEEGLIYSTIDEFHYKST 265


>ref|XP_006845815.1| hypothetical protein AMTR_s00019p00256940 [Amborella trichopoda]
           gi|548848387|gb|ERN07490.1| hypothetical protein
           AMTR_s00019p00256940 [Amborella trichopoda]
          Length = 300

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 26/67 (38%), Positives = 44/67 (65%)
 Frame = -1

Query: 480 GGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYSTI 301
           G  +D+  +VR +F +P   +   G+H+DE  RRLPG  +++I+  I FL+++G IYSTI
Sbjct: 231 GSDEDICNRVRIVFMDPAA-LENDGLHVDEAARRLPGIPKERILKVIGFLADEGEIYSTI 289

Query: 300 GDDHFKS 280
            +  ++S
Sbjct: 290 NESVYRS 296


>ref|XP_005651058.1| replication protein A, subunit RPA32 [Coccomyxa subellipsoidea
           C-169] gi|384253039|gb|EIE26514.1| replication protein
           A, subunit RPA32 [Coccomyxa subellipsoidea C-169]
          Length = 277

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 16/106 (15%)
 Frame = -1

Query: 546 APPSGLPHAQQNSYTSPAFDRSG----------------GSKDLFEKVRDIFDEPQHFVR 415
           AP SG+  AQ     +P     G                G  ++  KV  +F++P H   
Sbjct: 169 APGSGVAQAQSGIGGAPVAQTGGAGGTEFGGGPDEVGNDGLTNIQRKVLSVFEQPAHLAS 228

Query: 414 EQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYSTIGDDHFKST 277
            +G+ +++++ +LP  + +Q+ DA+TFL ++  IY+   + H+KST
Sbjct: 229 SEGITVEQVSAQLPNLTPKQVRDAVTFLMDNANIYTVSDEYHYKST 274


>ref|XP_002740859.2| PREDICTED: replication protein A 32 kDa subunit-like [Saccoglossus
           kowalevskii]
          Length = 241

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = -1

Query: 414 EQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYSTIGDDHFKSTN 274
           + G+ ID I +RL G S+  I +A+ FLSN+G IYSTI DDHFKST+
Sbjct: 194 DTGISIDVIGQRLRGMSKDAIRNAVEFLSNEGHIYSTIDDDHFKSTD 240


>ref|XP_002454830.1| hypothetical protein SORBIDRAFT_04g038190 [Sorghum bicolor]
           gi|241934661|gb|EES07806.1| hypothetical protein
           SORBIDRAFT_04g038190 [Sorghum bicolor]
          Length = 278

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/68 (41%), Positives = 40/68 (58%)
 Frame = -1

Query: 483 SGGSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYST 304
           SG   DL ++V   F EP +   E GVH+DE+ ++     + +I +AI F  + G +YST
Sbjct: 207 SGSDTDLNKQVLHFFSEPANLESEHGVHVDEVYKQFKQLPKDKIKEAIAFHVDAGHLYST 266

Query: 303 IGDDHFKS 280
           I D HFKS
Sbjct: 267 IDDFHFKS 274


>dbj|BAB40535.1| replication protein A 30kDa [Oryza sativa Japonica Group]
          Length = 279

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = -1

Query: 510 SYTSPAFDRSGGSK-DLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITF 334
           S  +P    + GSK DL  +V ++F EP +   E GVHIDEI +RL      +I  AI +
Sbjct: 199 SNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRL-RLPEAKIKVAIDY 257

Query: 333 LSNDGAIYSTIGDDHFKS 280
           L++ G IYSTI + H+KS
Sbjct: 258 LADIGHIYSTIDESHYKS 275


>ref|XP_006450138.1| hypothetical protein CICLE_v10009139mg [Citrus clementina]
           gi|568860158|ref|XP_006483593.1| PREDICTED: replication
           protein A 32 kDa subunit A-like [Citrus sinensis]
           gi|557553364|gb|ESR63378.1| hypothetical protein
           CICLE_v10009139mg [Citrus clementina]
          Length = 280

 Score = 55.8 bits (133), Expect = 7e-06
 Identities = 27/69 (39%), Positives = 43/69 (62%)
 Frame = -1

Query: 477 GSKDLFEKVRDIFDEPQHFVREQGVHIDEITRRLPGYSRQQIMDAITFLSNDGAIYSTIG 298
           G KD  + + D   +P    RE+GVH++E++ +L    +++IMD+I  L N+G IYSTI 
Sbjct: 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK-IPQKKIMDSIASLENEGLIYSTID 271

Query: 297 DDHFKSTNG 271
           + H+K   G
Sbjct: 272 EFHYKFARG 280