BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ephedra26_contig00026404
         (587 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A...    57   3e-06
emb|CAN73982.1| hypothetical protein VITISV_007640 [Vitis vinifera]    56   8e-06

>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 872

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 40/161 (24%), Positives = 67/161 (41%)
 Frame = -2

Query: 484 VSLYHFFGQVSGCQVNIAKSSIFLHNTSNIHQVITDWGTKIIHSGVSTKILGIAFKFASP 305
           +S ++ +G VSG  +N  KS +F+   +     I+D    I         LG       P
Sbjct: 207 MSFFYEYGSVSGQIINKDKSQVFIGKHNRRRHSISDC-LGIPLGTAPFMYLGAPIFHGKP 265

Query: 304 TQNFWTAIITKLEKKINNWKRMYCSYMEKKXXXXXXXXXXXXXXXXXXXXXXXIVKQIKI 125
               + AI+ K+  K+++W   + S   +                        ++++++ 
Sbjct: 266 RVAHFQAIVDKVRLKLSSWVGSFLSMAGRLQLIKSVIYSMFVYTFQVYEWPVSLLRKVER 325

Query: 124 LFCNFFWVNSDKPDHTGFPRCSWTDCCSPIDVGGIGLHDIN 2
              NF W  S   D  G P  SWT CC+PID GG+GL  ++
Sbjct: 326 WCRNFLW--SGDIDKRGIPLVSWTSCCAPIDEGGLGLKKLD 364


>emb|CAN73982.1| hypothetical protein VITISV_007640 [Vitis vinifera]
          Length = 1927

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 9/204 (4%)
 Frame = -2

Query: 586  RNPIAKYR*AIHISNVCR*QF-----FIIKNEPYNFQVFVSLYHFFGQVSGCQVNIAKSS 422
            RN +  +R   + + V   QF     F       + Q   SL   FG +SG +VN+ KS+
Sbjct: 1373 RNMLEGFRVGRNRTRVSHLQFADDTIFFSNTREEDLQTLKSLLLAFGHISGLKVNLDKSN 1432

Query: 421  IFLHNTSNIH--QVITDWGTKIIHSGVSTKILGIAFKFASPTQNFWTAIITKLEKKINNW 248
            I+  N    H  ++    G K   SG     LG+          FW  +I ++ ++++ W
Sbjct: 1433 IYGINLDXAHISRLAETLGCKA--SGXPILYLGLPLGGNPRAGGFWDPVIERISRRLDGW 1490

Query: 247  KRMYCSYMEKKXXXXXXXXXXXXXXXXXXXXXXXIVKQIKILFCNFFW--VNSDKPDHTG 74
            ++ Y S+  +                        +  +I+ L  +F W  +   K DH  
Sbjct: 1491 QKAYLSFXGRITLIQSCLTHMPCYYLSLFKLPASVAAKIERLQRDFLWSGIGEXKKDHL- 1549

Query: 73   FPRCSWTDCCSPIDVGGIGLHDIN 2
                 W   C P ++GG+G  +I+
Sbjct: 1550 ---VRWDVVCKPKEIGGLGFGNIS 1570