BLASTX nr result
ID: Ephedra26_contig00026110
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00026110
(450 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002445205.1| hypothetical protein SORBIDRAFT_07g005900 [S... 59 3e-15
gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum] 55 8e-15
gb|ABW74566.1| integrase [Boechera divaricarpa] 61 2e-14
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 67 3e-14
ref|XP_002459428.1| hypothetical protein SORBIDRAFT_02g004525 [S... 54 3e-14
ref|XP_006494292.1| PREDICTED: G-type lectin S-receptor-like ser... 53 5e-14
gb|ABR67407.1| integrase [Cucumis melo subsp. melo] 60 7e-14
ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri... 62 9e-14
ref|XP_002449917.1| hypothetical protein SORBIDRAFT_05g025655 [S... 54 1e-13
gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyr... 51 2e-13
ref|XP_002461816.1| hypothetical protein SORBIDRAFT_02g008720 [S... 54 2e-13
emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera] 65 3e-13
ref|XP_005717340.1| Retrovirus-related Gag-Pol polyprotein [Chon... 55 3e-13
ref|XP_005717320.1| Retrovirus-related Gag-Pol polyprotein [Chon... 55 3e-13
ref|XP_005718155.1| unnamed protein product [Chondrus crispus] g... 55 3e-13
ref|XP_005713267.1| unnamed protein product [Chondrus crispus] g... 55 4e-13
emb|CAE03692.2| OSJNBb0026E15.10 [Oryza sativa Japonica Group] 52 6e-13
ref|XP_005717319.1| RNA-dependent DNA polymerase [Chondrus crisp... 57 6e-13
emb|CAE03285.2| OSJNBb0046P18.1 [Oryza sativa Japonica Group] 54 6e-13
gb|AAU90089.1| putative polyprotein [Oryza sativa Japonica Group] 50 6e-13
>ref|XP_002445205.1| hypothetical protein SORBIDRAFT_07g005900 [Sorghum bicolor]
gi|241941555|gb|EES14700.1| hypothetical protein
SORBIDRAFT_07g005900 [Sorghum bicolor]
Length = 819
Score = 59.3 bits (142), Expect(2) = 3e-15
Identities = 29/62 (46%), Positives = 38/62 (61%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
G+H Q T YT Q NGV+ER+N+T + RS+L GL +FW +T A YL N SK
Sbjct: 24 GVHRQLTAPYTPQQNGVVERRNQTVVGTARSMLKAKGLPGEFWGEAVTTAVYLLNRSSSK 83
Query: 212 SI 217
S+
Sbjct: 84 SV 85
Score = 47.8 bits (112), Expect(2) = 3e-15
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP++L P + H+R F + MK+ P L KL R+ + I +GY SK YR ++P
Sbjct: 89 TPYELWTGSVPGVQHLRTFGSIAHMKVTTPSLKKLDDRSRRTIFVGYEPGSKAYRVYDPV 148
Query: 408 S 410
S
Sbjct: 149 S 149
>gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]
Length = 1347
Score = 55.5 bits (132), Expect(2) = 8e-15
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +3
Query: 231 PFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPNS 410
P ++L P+LS++RVF + + DKL R V+CI LGYSR K YRCF+P S
Sbjct: 623 PIEILLNKKPDLSYLRVFGCCCFVHVPAGKRDKLDKRAVKCIFLGYSRNQKGYRCFDPES 682
Score = 50.1 bits (118), Expect(2) = 8e-15
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIIS 208
GI HQ T YT Q NGV ERKN+ +N+ R+++ ++ +FWS+ + A +L N I S
Sbjct: 557 GIIHQTTCVYTPQQNGVAERKNRHLLNVARAMMFKMNVKKRFWSDAVLTACHLINRIPS 615
>gb|ABW74566.1| integrase [Boechera divaricarpa]
Length = 1165
Score = 61.2 bits (147), Expect(2) = 2e-14
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
GIHH+ T AYT + NGV ERKN T + M RS+L + L N+FW+ + A YL N+ +K
Sbjct: 426 GIHHELTTAYTPEQNGVAERKNTTVVEMARSMLKERNLPNQFWAESVRTAVYLLNISPTK 485
Query: 212 SI 217
++
Sbjct: 486 AV 487
Score = 43.1 bits (100), Expect(2) = 2e-14
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP++ P +SH+RVF + I KL ++ +CI LGY SK YR +NP
Sbjct: 491 TPYEAWCGRKPGVSHLRVFGSVCYSLIDAHNRKKLDEKSEKCIFLGYCSQSKGYRLYNPV 550
Query: 408 S 410
S
Sbjct: 551 S 551
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 67.4 bits (163), Expect(2) = 3e-14
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 29 NGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIIS 208
+GIHH+ T Y+ Q NGV ER+N+T + M RS++++ L NKFW+ I + YLQN + S
Sbjct: 602 SGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPS 661
Query: 209 KSIQ 220
KS++
Sbjct: 662 KSLE 665
Score = 36.2 bits (82), Expect(2) = 3e-14
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP ++ P++ H++VF + I KL + Q I +GYS SK YR F N
Sbjct: 669 TPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLN 728
Query: 408 SE 413
E
Sbjct: 729 EE 730
>ref|XP_002459428.1| hypothetical protein SORBIDRAFT_02g004525 [Sorghum bicolor]
gi|241922805|gb|EER95949.1| hypothetical protein
SORBIDRAFT_02g004525 [Sorghum bicolor]
Length = 868
Score = 54.3 bits (129), Expect(2) = 3e-14
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
G+H Q T YT Q NGV+ER+N+T + RS++ L FW +T A YL N SK
Sbjct: 86 GVHRQLTAPYTPQQNGVVERRNQTVVGTARSMMKAKALPGVFWGEAVTTAVYLLNRSSSK 145
Query: 212 SI 217
+I
Sbjct: 146 AI 147
Score = 49.3 bits (116), Expect(2) = 3e-14
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP+QL TP++ H+R F +K+ P L KL RN + + +GY SK YR ++P+
Sbjct: 151 TPYQLWNGSTPSVQHLRTFGCIAHVKVNTPHLKKLEDRNRRMVFVGYEPGSKAYRAYDPS 210
Query: 408 S 410
+
Sbjct: 211 T 211
>ref|XP_006494292.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein
kinase RLK1-like, partial [Citrus sinensis]
Length = 1304
Score = 52.8 bits (125), Expect(2) = 5e-14
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCF--N 401
TP++L + PNLS++RV+ R +++ +P + KL R ++CI LGY+ SK YR
Sbjct: 126 TPYELWKKKKPNLSYLRVWGCRAIVRLPEPKIKKLGERGIECIFLGYAEHSKAYRFLVTE 185
Query: 402 PNS 410
PNS
Sbjct: 186 PNS 188
Score = 50.1 bits (118), Expect(2) = 5e-14
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
GI H+ + AYT Q NGV ERKN+T + M ++L + GL FW I A ++ N + +K
Sbjct: 62 GIVHETSTAYTPQQNGVAERKNRTLIEMVNAMLFNTGLGKGFWGEAILTACHILNRVPNK 121
Query: 212 SIQL 223
++
Sbjct: 122 KTKV 125
>gb|ABR67407.1| integrase [Cucumis melo subsp. melo]
Length = 1281
Score = 60.5 bits (145), Expect(2) = 7e-14
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
GIHHQ T T Q NGV ERKN+T M M RS+L L N+FW + + Y+ N +K
Sbjct: 574 GIHHQMTARMTTQQNGVAERKNRTIMEMARSMLKAKNLPNEFWGDAVACTVYILNRAPTK 633
Query: 212 SIQLLNSFSA 241
S+ + + A
Sbjct: 634 SVPGMTPYEA 643
Score = 42.0 bits (97), Expect(2) = 7e-14
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP++ P++SH++VF + I KL ++ +CI++GY+ SK YR +NP
Sbjct: 639 TPYEAWCDEKPSVSHLKVFRSIAYSHIPNQLRGKLDDKSEKCIMVGYNENSKAYRLYNPV 698
Query: 408 S 410
S
Sbjct: 699 S 699
>ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101216349 [Cucumis sativus]
Length = 1830
Score = 61.6 bits (148), Expect(2) = 9e-14
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = +2
Query: 20 LINNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNM 199
L NGI HQKT+ T Q NGV ERKN+ M + RS+L L ++FW + +T A YL N
Sbjct: 579 LKENGIKHQKTLRRTPQQNGVAERKNRIIMELARSMLKAKKLPDQFWGDAVTCAVYLLNR 638
Query: 200 IISKSIQ 220
+KS+Q
Sbjct: 639 ASTKSVQ 645
Score = 40.4 bits (93), Expect(2) = 9e-14
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3
Query: 258 PNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPNSE 413
P +SH+RVF I KL ++ +CI +GYS SK YR +NP S+
Sbjct: 658 PTVSHLRVFGCIAYSHISDEKRGKLDDKSEKCIFVGYSENSKAYRLYNPISK 709
>ref|XP_002449917.1| hypothetical protein SORBIDRAFT_05g025655 [Sorghum bicolor]
gi|241935760|gb|EES08905.1| hypothetical protein
SORBIDRAFT_05g025655 [Sorghum bicolor]
Length = 846
Score = 54.3 bits (129), Expect(2) = 1e-13
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
G+H Q T YT Q NGV+ER+N+T + RS++ L FW +T A YL N SK
Sbjct: 86 GVHRQLTAPYTPQQNGVVERRNQTVVGTARSMMKAKALPGVFWGEAVTTAVYLLNRSSSK 145
Query: 212 SI 217
+I
Sbjct: 146 AI 147
Score = 47.4 bits (111), Expect(2) = 1e-13
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP+QL TP++ H+R F +K+ P L KL R+ + + +GY SK YR ++P+
Sbjct: 151 TPYQLWNGSTPSVQHLRTFGCIAHVKVNTPHLKKLEDRSRRMVFVGYEPGSKAYRAYDPS 210
Query: 408 S 410
+
Sbjct: 211 T 211
>gb|ABW81017.1| gag-pol polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1034
Score = 50.8 bits (120), Expect(2) = 2e-13
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
GI H+ T YT Q NGV ERKN+ M S+L +GL + FW + A YL N + +K
Sbjct: 538 GIIHETTAPYTPQQNGVFERKNRVLKEMVNSMLSYSGLSDGFWGEAMLTACYLLNRVPNK 597
Score = 50.4 bits (119), Expect(2) = 2e-13
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCF--N 401
TP++L ++ PNL+++RV+ R +++ +P + L R + CI +GY+ SK YR +
Sbjct: 602 TPYELWYKKKPNLNYLRVWGCRAIVRLPQPKIKTLGERGIDCIFIGYALHSKAYRFYVIE 661
Query: 402 PNSEI 416
PN I
Sbjct: 662 PNDSI 666
>ref|XP_002461816.1| hypothetical protein SORBIDRAFT_02g008720 [Sorghum bicolor]
gi|241925193|gb|EER98337.1| hypothetical protein
SORBIDRAFT_02g008720 [Sorghum bicolor]
Length = 859
Score = 53.9 bits (128), Expect(2) = 2e-13
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
G+H Q T YT Q NG++ER+N+T + RS++ L FW +T A YL N SK
Sbjct: 91 GVHRQLTAPYTPQQNGIVERRNQTVVGTARSMMKAKALPGVFWGEAVTTAVYLLNRSSSK 150
Query: 212 SI 217
+I
Sbjct: 151 AI 152
Score = 47.4 bits (111), Expect(2) = 2e-13
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP+QL TP++ H+R F +K+ P L KL R+ + + +GY SK YR ++P+
Sbjct: 156 TPYQLWNGSTPSVQHLRTFGCIAHVKVNTPHLKKLEDRSRRMVFVGYEPGSKAYRAYDPS 215
Query: 408 S 410
+
Sbjct: 216 T 216
>emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera]
Length = 1102
Score = 64.7 bits (156), Expect(2) = 3e-13
Identities = 32/70 (45%), Positives = 43/70 (61%)
Frame = +2
Query: 32 GIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMIISK 211
GI HQ T YT Q NGV+ERKN+T M MTR +L + GL KFW+ + +L N + +K
Sbjct: 420 GIEHQLTTPYTPQQNGVVERKNRTLMEMTRCLLHEKGLPKKFWAEAAHTSVFLLNRLPTK 479
Query: 212 SIQLLNSFSA 241
++Q F A
Sbjct: 480 ALQQXTPFEA 489
Score = 35.8 bits (81), Expect(2) = 3e-13
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TPF+ + + P L +++ F I DKL + I +GYS SK YR + P
Sbjct: 485 TPFEAWYGYKPRLQNLKTFGCLCFSYIPHVKRDKLDKKAEAXIFIGYSSISKAYRIYLPE 544
Query: 408 S 410
+
Sbjct: 545 N 545
>ref|XP_005717340.1| Retrovirus-related Gag-Pol polyprotein [Chondrus crispus]
gi|515797426|emb|CDF77556.1| Retrovirus-related Gag-Pol
polyprotein [Chondrus crispus]
Length = 1365
Score = 55.5 bits (132), Expect(2) = 3e-13
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = +2
Query: 20 LINNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNM 199
L +NG HQ T AYT + NGV ER N+T +++ RS+L + +FW+ + A Y++N
Sbjct: 580 LDSNGTQHQLTTAYTPEQNGVAERLNRTLIDLVRSMLSHKQVSKRFWAEALATAVYVRNR 639
Query: 200 IISKSI 217
+ S+++
Sbjct: 640 VTSRAL 645
Score = 44.7 bits (104), Expect(2) = 3e-13
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFN 401
TP + + TPN+ H+RVF ++ + K L KL +R + + LGYS+ SK Y+ ++
Sbjct: 650 TPHHIWMKSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYKLWD 707
>ref|XP_005717320.1| Retrovirus-related Gag-Pol polyprotein [Chondrus crispus]
gi|515797406|emb|CDF77536.1| Retrovirus-related Gag-Pol
polyprotein [Chondrus crispus]
Length = 1365
Score = 55.5 bits (132), Expect(2) = 3e-13
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = +2
Query: 20 LINNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNM 199
L +NG HQ T AYT + NGV ER N+T +++ RS+L + +FW+ + A Y++N
Sbjct: 580 LDSNGTQHQLTTAYTPEQNGVAERLNRTLIDLVRSMLSHKQVSKRFWAEALATAVYVRNR 639
Query: 200 IISKSI 217
+ S+++
Sbjct: 640 VTSRAL 645
Score = 44.7 bits (104), Expect(2) = 3e-13
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFN 401
TP + + TPN+ H+RVF ++ + K L KL +R + + LGYS+ SK Y+ ++
Sbjct: 650 TPHHIWMKSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYKLWD 707
>ref|XP_005718155.1| unnamed protein product [Chondrus crispus]
gi|507114740|emb|CDF38270.1| unnamed protein product
[Chondrus crispus]
Length = 361
Score = 55.5 bits (132), Expect(2) = 3e-13
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = +2
Query: 20 LINNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNM 199
L +NG HQ T AYT + NGV ER N+T +++ RS+L + +FW+ + A Y++N
Sbjct: 46 LDSNGTQHQLTTAYTPEQNGVAERLNRTLIDLVRSMLSHKQVSKRFWAEALATAVYVRNR 105
Query: 200 IISKSI 217
+ S+++
Sbjct: 106 VTSRAL 111
Score = 44.7 bits (104), Expect(2) = 3e-13
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFN 401
TP + + TPN+ H+RVF ++ + K L KL +R + + LGYS+ SK Y+ ++
Sbjct: 116 TPHHIWMKSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYKLWD 173
>ref|XP_005713267.1| unnamed protein product [Chondrus crispus]
gi|507109652|emb|CDF33464.1| unnamed protein product
[Chondrus crispus]
Length = 661
Score = 55.5 bits (132), Expect(2) = 4e-13
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = +2
Query: 20 LINNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNM 199
L +NG HQ T AYT + NGV ER N+T +++ RS+L + +FW+ + A Y++N
Sbjct: 459 LDSNGTQHQLTTAYTPEQNGVAERLNRTLIDLVRSMLSHKQVSKRFWAEALATAVYVRNR 518
Query: 200 IISKSI 217
+ S+++
Sbjct: 519 VTSRAL 524
Score = 44.3 bits (103), Expect(2) = 4e-13
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYR 392
TP + + TPN+ H+RVF ++ + K L KL +R + + LGYS+ SK Y+
Sbjct: 529 TPHHIWMKSTPNVGHLRVFGSKCWYTLPKLELRKLDLRAREAMFLGYSQCSKAYK 583
>emb|CAE03692.2| OSJNBb0026E15.10 [Oryza sativa Japonica Group]
Length = 1449
Score = 52.0 bits (123), Expect(2) = 6e-13
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP++ + P + +R F +KI KPGL KL R+ +LLGY + SK YR ++P
Sbjct: 739 TPYEAWYGQWPAVHFLRTFGCVGHVKITKPGLKKLDDRSAPMVLLGYEQGSKAYRLYDPV 798
Query: 408 SE 413
SE
Sbjct: 799 SE 800
Score = 47.4 bits (111), Expect(2) = 6e-13
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +2
Query: 26 NNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMII 205
N G+ Q T Y+ Q NGV+ER+N+T + RS++ G+ +FW ++ A +L N
Sbjct: 672 NLGVGRQLTAPYSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTAVFLLNRSP 731
Query: 206 SKSIQLLNSFSA 241
+KS+ + A
Sbjct: 732 TKSLDNQTPYEA 743
>ref|XP_005717319.1| RNA-dependent DNA polymerase [Chondrus crispus]
gi|515797405|emb|CDF77535.1| RNA-dependent DNA
polymerase [Chondrus crispus]
Length = 1372
Score = 56.6 bits (135), Expect(2) = 6e-13
Identities = 28/66 (42%), Positives = 41/66 (62%)
Frame = +2
Query: 20 LINNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNM 199
LI NG HQ T AYT + NGV ER N+T +N+ RS+L + FW+ + A Y++N
Sbjct: 582 LIANGTQHQMTTAYTPEQNGVAERLNRTLVNLVRSMLAHKKVTKGFWAEALANAVYVRNR 641
Query: 200 IISKSI 217
+ S++I
Sbjct: 642 VTSRAI 647
Score = 42.7 bits (99), Expect(2) = 6e-13
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFN 401
TP+ L + PN+ H+RVF ++ + K + KL R + + LGY+ +K Y+ ++
Sbjct: 652 TPYHLWMKSVPNVGHLRVFGSKCWYTLPKHNIQKLDARAKEAMFLGYAENTKAYKLWD 709
>emb|CAE03285.2| OSJNBb0046P18.1 [Oryza sativa Japonica Group]
Length = 1349
Score = 53.9 bits (128), Expect(2) = 6e-13
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP++ + P + +R F +KI KPGL KL R+V +LLGY SK YR ++P+
Sbjct: 771 TPYEAWYGQRPAVHFLRTFGCMGHVKITKPGLKKLNDRSVPMVLLGYEEGSKAYRLYDPD 830
Query: 408 S 410
S
Sbjct: 831 S 831
Score = 45.4 bits (106), Expect(2) = 6e-13
Identities = 22/72 (30%), Positives = 39/72 (54%)
Frame = +2
Query: 26 NNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMII 205
N G+ + T+ Y+ Q NGV+ER+N+T + RS++ G+ +FW ++ +L N
Sbjct: 704 NLGVGRKLTVPYSPQQNGVVERRNQTIVATARSMMKAKGVPGRFWGEAMSTTVFLLNRSP 763
Query: 206 SKSIQLLNSFSA 241
KS+ + A
Sbjct: 764 KKSLDNQTPYEA 775
>gb|AAU90089.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1094
Score = 50.4 bits (119), Expect(2) = 6e-13
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = +2
Query: 26 NNGIHHQKTIAYTRQ*NGVIERKNKT*MNMTRSILDDAGLENKFWSNFITIANYLQNMII 205
+ G+ Q T Y+ Q NGV+ER+N T + RS+L AG+ +FW + A YL N
Sbjct: 324 DRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSMLKAAGMPAQFWGEAVVAAVYLLNRSP 383
Query: 206 SKSIQLLNSFSA 241
+KS+ + + A
Sbjct: 384 TKSLDGVTPYEA 395
Score = 48.9 bits (115), Expect(2) = 6e-13
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 228 TPFQLLFRHTPNLSHIRVFSARWSMKIVKPGLDKLIVRNVQCILLGYSRASKEYRCFNPN 407
TP++ P++ H++VF +K VKP L KL R + + +GY + SK YR ++P
Sbjct: 391 TPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPV 450
Query: 408 S 410
S
Sbjct: 451 S 451