BLASTX nr result
ID: Ephedra26_contig00024814
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ephedra26_contig00024814
(1253 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 239 1e-60
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 238 4e-60
gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus... 235 2e-59
gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobro... 235 2e-59
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 235 3e-59
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 235 3e-59
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc... 233 1e-58
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 233 2e-58
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 233 2e-58
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 233 2e-58
ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [A... 232 3e-58
ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutr... 231 4e-58
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 228 3e-57
ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha... 228 5e-57
ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polyme... 226 2e-56
ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, part... 225 3e-56
gb|ADU04140.1| hypothetical protein [Gossypium hirsutum] 225 3e-56
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 224 4e-56
ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polyme... 223 1e-55
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ... 223 1e-55
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 239 bits (611), Expect = 1e-60
Identities = 123/244 (50%), Positives = 160/244 (65%), Gaps = 3/244 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+EP KARS KCLELA+L AVDFAKTG PAEMP +L P
Sbjct: 875 VDYMINDTLGAISTAHLVHADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRALKP 934
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFME+ D+PMYIS G+LGKLYRA + ++ + ++ + YD LE +GF+
Sbjct: 935 REFPDFMERFDKPMYISNGVLGKLYRALVESTTQVRSNIVLSEKFAEEAYDHQLEVNGFE 994
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y K+ LM FY + E EM+ G++ + R+ ++YG MK I
Sbjct: 995 AFLETASSHKEMYAQKMSSLMSFYDAETEDEMLTGNLQNRASYLQRDNRRYGDMKDRILI 1054
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS-LLSFPWIKYKLLLNI 711
++DL+ +A WF + C+ H + ASAWYHVTYHP Y E S LSFPWI +LL+I
Sbjct: 1055 SVKDLQREAKEWFESDCQPH-EYQLMASAWYHVTYHPKYSHESSTFLSFPWIVGDILLHI 1113
Query: 712 KRFN 723
K N
Sbjct: 1114 KSVN 1117
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 238 bits (607), Expect = 4e-60
Identities = 124/248 (50%), Positives = 159/248 (64%), Gaps = 3/248 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD++P KARS KCL LA L AVDFAKTG PAEMP +L P
Sbjct: 885 VDYMINDTLGAISTAHLVHADRDPDKARSSKCLHLATLHSMAVDFAKTGAPAEMPLALKP 944
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
KE+PDFME+ D+P YIS G+LGKLYRA D + + + I + YD LE DGF+
Sbjct: 945 KEFPDFMEREDKPRYISFGVLGKLYRATLDSIMQIRSNAIWSEKIAEASYDHDLEVDGFE 1004
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y+ ++ LM +YG E E++ G++ + R+ ++YG MK I
Sbjct: 1005 AFLGVAESHKEMYEEEMNALMNYYGASTEDEILTGNLRNRASYLQRDNRRYGDMKDRILL 1064
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNI 711
++L+N+A WF + CK + ASAWYHVTY P+Y E +LLSFPWI +LLNI
Sbjct: 1065 SAKNLQNEAKEWFGSSCK-ENEHPQLASAWYHVTYSPSYCKERMALLSFPWIVGDILLNI 1123
Query: 712 KRFNETKA 735
K N KA
Sbjct: 1124 KSVNSRKA 1131
>gb|ESW27397.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 235 bits (600), Expect = 2e-59
Identities = 121/246 (49%), Positives = 163/246 (66%), Gaps = 4/246 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+EP KA+S KCLELA+L AVDFAKTG PA MP L P
Sbjct: 871 VDYMINDTLGAISTAHLVHADREPDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKP 930
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFME+ ++PMYIS G+LGKLYRA + + K + + + YD+SLE +GF+
Sbjct: 931 REFPDFMERVEKPMYISKGVLGKLYRAIIESQMQIKYSFVWSEKLAEEAYDRSLEVNGFE 990
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y K+ LM FYG + E EM++G++ + R+ ++YG MK I
Sbjct: 991 AFLETASSHKEMYAQKMSSLMNFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILL 1050
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS--LLSFPWIKYKLLLN 708
+++L+ +A WF C+ H + ASAWYHVTYHP+Y+ + S LSFPWI ++LL
Sbjct: 1051 SVKNLQREAKEWFETSCQPH-EYRPMASAWYHVTYHPSYYCQESSCFLSFPWIVGEVLLQ 1109
Query: 709 IKRFNE 726
IK N+
Sbjct: 1110 IKSVNK 1115
>gb|EOY20662.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|508773407|gb|EOY20663.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao]
Length = 1149
Score = 235 bits (600), Expect = 2e-59
Identities = 128/256 (50%), Positives = 164/256 (64%), Gaps = 4/256 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+EP KARS KCLELA L AVDFAKTG PAEMP SL P
Sbjct: 877 VDYMINDTLGAISTAHLVHADREPDKARSEKCLELATLHSMAVDFAKTGAPAEMPRSLKP 936
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAA-KDKLSENKKAVIGRHCG-IKYDKSLECDGFQ 354
+E+PDFM++ D+PMY S G+LGKLYRA + E K V + YD LE +GF+
Sbjct: 937 REFPDFMQRVDKPMYASLGVLGKLYRATINSTVQERSKFVWSKKMAEALYDHDLEVNGFE 996
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL+ A K Y+ K+ LM +Y +++E E++ G++ + R+ ++YG MK I
Sbjct: 997 AFLSTAQTHKDMYEEKMSFLMNYYEVESEDEILTGNMRNKATFLQRDNRRYGDMKDRILL 1056
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG--SLLSFPWIKYKLLLN 708
+++L+ +A F N CKV + ASAWYHVTYHPNY E S LSFPWI +LL
Sbjct: 1057 SMKNLQREARERFENSCKV-GEHQRLASAWYHVTYHPNYCQESMKSCLSFPWIVGDILLK 1115
Query: 709 IKRFNETKACQQREAP 756
IK N + QRE P
Sbjct: 1116 IKSVNSREI--QREQP 1129
>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
max]
Length = 941
Score = 235 bits (599), Expect = 3e-59
Identities = 119/242 (49%), Positives = 161/242 (66%), Gaps = 4/242 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+E KA+S KCLELA+L AVDFAKTG PA MP L P
Sbjct: 693 VDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKP 752
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFME+ D+PMYIS G+LGKLYRA + + + + + +H YD+SLE +GF+
Sbjct: 753 REFPDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFE 812
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y K+ LM+FYG + E EM++G++ + R+ ++YG MK I
Sbjct: 813 AFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILL 872
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS--LLSFPWIKYKLLLN 708
+++L+ +A WF C+ H + ASAWYHVTYHP+Y+ S LSFPWI ++LL
Sbjct: 873 SVKNLQREAKEWFETSCEPH-EYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILLQ 931
Query: 709 IK 714
I+
Sbjct: 932 IR 933
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 235 bits (599), Expect = 3e-59
Identities = 119/242 (49%), Positives = 161/242 (66%), Gaps = 4/242 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+E KA+S KCLELA+L AVDFAKTG PA MP L P
Sbjct: 873 VDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKP 932
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFME+ D+PMYIS G+LGKLYRA + + + + + +H YD+SLE +GF+
Sbjct: 933 REFPDFMERVDKPMYISKGVLGKLYRAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFE 992
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y K+ LM+FYG + E EM++G++ + R+ ++YG MK I
Sbjct: 993 AFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNLQNRASYLQRDNRRYGDMKDRILL 1052
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS--LLSFPWIKYKLLLN 708
+++L+ +A WF C+ H + ASAWYHVTYHP+Y+ S LSFPWI ++LL
Sbjct: 1053 SVKNLQREAKEWFETSCEPH-EYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGEILLQ 1111
Query: 709 IK 714
I+
Sbjct: 1112 IR 1113
>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
[Medicago truncatula]
Length = 1308
Score = 233 bits (594), Expect = 1e-58
Identities = 123/245 (50%), Positives = 160/245 (65%), Gaps = 3/245 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+E KA+S KCLELA+L AVDFAKTG PAEMP SL P
Sbjct: 876 VDYMINDTLGAISTAHLVHADREHDKAKSRKCLELAELHSMAVDFAKTGAPAEMPRSLKP 935
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIK--YDKSLECDGFQ 354
+E+PDFME+ ++PMYIS G+LGKLYRA D + + ++ K YD LE DGF+
Sbjct: 936 REFPDFMERFEKPMYISKGVLGKLYRATIDSNLQVRFDMVMSEKFAKEAYDHQLEVDGFE 995
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
FL A+ + Y K+ LM FYG E EM+ G++ + R+ ++YG MK I
Sbjct: 996 VFLETALSHRDMYAQKMISLMSFYGATTEDEMLTGNLQNRASYLQRDNRRYGDMKDRILI 1055
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS-LLSFPWIKYKLLLNI 711
++DL+ +A WF + C+ H + ASAWYHVTYHP Y+ E S LSFPWI +LL+I
Sbjct: 1056 SVKDLQLEAKEWFESDCQPH-EYQLMASAWYHVTYHPKYYIESSTFLSFPWIVGDILLHI 1114
Query: 712 KRFNE 726
K N+
Sbjct: 1115 KSANK 1119
Score = 135 bits (339), Expect = 5e-29
Identities = 90/242 (37%), Positives = 117/242 (48%), Gaps = 1/242 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+ DTLG IS AH VHAD E KA+S KCLELA+L AVDFAKTG AEMP L P
Sbjct: 1125 VDYMIKDTLGAISTAHLVHADCESNKAKSRKCLELAELHSMAVDFAKTGALAEMPRVLKP 1184
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
KE+PDFME+ ++PMY+S K V+G+
Sbjct: 1185 KEFPDFMERFEKPMYVS-------------------KGVLGK------------------ 1207
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
Y E M + S SS +F+ +K I K+
Sbjct: 1208 --------------------LYRALVESTMQLTSNFVSSGNFLSKKHMI------INLKL 1241
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS-LLSFPWIKYKLLLNIKR 717
DL+ + WF + C+ H + ASAWYHV +HP Y+ + S +SFPWI +LL +K
Sbjct: 1242 MDLQLEVKEWFESDCQPH-EHQLMASAWYHVIHHPKYYHKSSNFVSFPWIVGDILLYVKH 1300
Query: 718 FN 723
N
Sbjct: 1301 AN 1302
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 233 bits (593), Expect = 2e-58
Identities = 120/247 (48%), Positives = 155/247 (62%), Gaps = 3/247 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+EP KA S KCLELA L AVDFAKTG PAEMP L P
Sbjct: 869 VDYMINDTLGAISTAHLVHADREPKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKP 928
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIK--YDKSLECDGFQ 354
+E+PDFME+ D+PMYIS+ +LGKLYRAA + + + ++ + YD LE DGF+
Sbjct: 929 REFPDFMERFDKPMYISSNVLGKLYRAAVKSIEQERSRLVWSEEAARAIYDYDLEVDGFE 988
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y K+ LM +YG + E E+++G + + R+ +KYG MK I
Sbjct: 989 AFLEIAETYKEMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILL 1048
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGSL-LSFPWIKYKLLLNI 711
+++LR + WF N C + ASAWYHVTYHP+Y+ E SFPW +LLNI
Sbjct: 1049 SVKNLRKEVKEWFENSCDPLNR-RMMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNI 1107
Query: 712 KRFNETK 732
K N +
Sbjct: 1108 KAMNSKR 1114
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 983
Score = 233 bits (593), Expect = 2e-58
Identities = 118/244 (48%), Positives = 156/244 (63%), Gaps = 3/244 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
++YM+NDTLG IS AH VHAD+EP KARS KCL+LA+L AVDFAKTG PAEMP +L P
Sbjct: 719 IDYMINDTLGAISTAHLVHADREPDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKP 778
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRH--CGIKYDKSLECDGFQ 354
KE+PDFME+ D+ MYIS G+LGKLYR D + + + YD LE GF+
Sbjct: 779 KEFPDFMERIDKKMYISGGVLGKLYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFE 838
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
F+ A+ K Y KL LM++Y + E E++ G++ + R+ ++YG K I
Sbjct: 839 EFVEIAISHKDMYVEKLSGLMDYYEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILI 898
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNI 711
++ L+ +A WF +CC+ K ASAWYHVTYHP+Y+ EG + LSFPWI +LLNI
Sbjct: 899 SVKSLQKEAKEWFESCCQAKEK-QRLASAWYHVTYHPSYFQEGITCLSFPWIVADILLNI 957
Query: 712 KRFN 723
K N
Sbjct: 958 KSAN 961
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 233 bits (593), Expect = 2e-58
Identities = 124/248 (50%), Positives = 155/248 (62%), Gaps = 3/248 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG+IS AH VHAD+EP KARS KCLELA L AVDFAKTG PAEMP L P
Sbjct: 869 VDYMINDTLGVISTAHLVHADREPEKARSKKCLELATLHSMAVDFAKTGAPAEMPRVLKP 928
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
KE+PDFME+ D+PMYIS G LGKLYRA K + + G G YD LE DGF+
Sbjct: 929 KEFPDFMERVDKPMYISNGALGKLYRATIASRVNEKSSFVWSGTIPGAAYDHDLEVDGFE 988
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
FL A + K Y K+ LM FYG ++E EM+ G++ R+ +++ MK I
Sbjct: 989 TFLEIAKLHKEMYAEKMATLMNFYGAESEDEMLTGNLRNKLMYLQRDNRRFTEMKDRILI 1048
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSE-GSLLSFPWIKYKLLLNI 711
++ L+ +A W CK H+ ASAWYHVTYH + S+ + LSFPWI ++LL I
Sbjct: 1049 SVKSLQKEAKEWLYGSCKPHQHQK-MASAWYHVTYHSTFSSQTPNFLSFPWIVGEVLLVI 1107
Query: 712 KRFNETKA 735
K N KA
Sbjct: 1108 KSANSRKA 1115
>ref|XP_006836643.1| hypothetical protein AMTR_s00088p00026960 [Amborella trichopoda]
gi|548839203|gb|ERM99496.1| hypothetical protein
AMTR_s00088p00026960 [Amborella trichopoda]
Length = 1107
Score = 232 bits (591), Expect = 3e-58
Identities = 121/242 (50%), Positives = 165/242 (68%), Gaps = 2/242 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+ND LG ISNAH V AD+E KARSPKC+ELAKL AVDFAKTG PAEMP SL
Sbjct: 862 VDYMINDNLGAISNAHLVLADREKSKARSPKCIELAKLHSMAVDFAKTGAPAEMPRSLML 921
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKD-KLSENKKAVIGRHCGIK-YDKSLECDGFQ 354
KEYPDFME+ ++ Y S GILGKLYR AK+ S++ + V ++ + YD +L GF+
Sbjct: 922 KEYPDFMERGEKSTYASPGILGKLYRLAKEASNSQSFELVSSKNVALPFYDTNLLAKGFE 981
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
F+ A+ K Y KL+ELM++YG ++E E++ G+I K S R+ +KYG +K I
Sbjct: 982 EFIELAVKHKEAYGQKLQELMDYYGAESESEILSGNISKKSGYLQRDNRKYGEVKDRILI 1041
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGSLLSFPWIKYKLLLNIK 714
+++L+ +A WF + C+ + + S ASAWYHVTY P+++S+ + SFPWI +LLNIK
Sbjct: 1042 AVKNLQREAQGWFKSSCEPN-QSSKLASAWYHVTYRPDHFSKVNFFSFPWILADVLLNIK 1100
Query: 715 RF 720
F
Sbjct: 1101 AF 1102
>ref|XP_006396953.1| hypothetical protein EUTSA_v10028370mg [Eutrema salsugineum]
gi|557097970|gb|ESQ38406.1| hypothetical protein
EUTSA_v10028370mg [Eutrema salsugineum]
Length = 1124
Score = 231 bits (590), Expect = 4e-58
Identities = 115/248 (46%), Positives = 158/248 (63%), Gaps = 1/248 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM++DTLG+IS AH +HAD++P KARS KCLELA L +AVDFAKTG PAEMPY+L P
Sbjct: 875 VDYMISDTLGVISTAHLIHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKP 934
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
+E+PDF+E+ ++PMYIS + GKLYRA K L++ K + YD +LE GF++F
Sbjct: 935 REFPDFLERFEKPMYISESVFGKLYRAVKRSLAQRKPEEAESEVTMAYDSTLEEAGFESF 994
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
+ A + Y KL LM +YG NE E++ G + R+ ++YG MK I +
Sbjct: 995 IETAKAHRDMYAEKLSSLMNYYGAANEEEILTGILRTKEMYLQRDNRRYGDMKDRITLSV 1054
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSE-GSLLSFPWIKYKLLLNIKR 717
+DL+ +A WF CK ++ ASAWY+VTY+P++ E LSFPWI +LL IK
Sbjct: 1055 KDLQREAMGWFDKSCKEEQQRKKLASAWYYVTYNPSHRDEKPKFLSFPWIVGDVLLGIKA 1114
Query: 718 FNETKACQ 741
N + Q
Sbjct: 1115 ENAERERQ 1122
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 228 bits (582), Expect = 3e-57
Identities = 117/245 (47%), Positives = 160/245 (65%), Gaps = 4/245 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+E KA+S KCLELA+L AVDFAKTG PA MP L P
Sbjct: 872 VDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAELHSMAVDFAKTGAPAAMPRVLKP 931
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFME+ D+PMYIS G+LGKLY A + + + + + +H YD+SLE +GF+
Sbjct: 932 REFPDFMERVDKPMYISKGVLGKLYHAIIESQMQIRYSFVWSEKHAEEAYDRSLEVNGFE 991
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
AFL A K Y K+ LM+FYG + E EM++G++ + R+ ++YG MK I
Sbjct: 992 AFLETASTHKEMYAEKMSSLMDFYGAETEDEMLLGNVQNRASYLQRDNRRYGDMKDRILL 1051
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEGS--LLSFPWIKYKLLLN 708
+++L+ +A WF C+ R+ ASAWYHVTYH +++ + S LSFPWI +LL
Sbjct: 1052 SVKNLQREAKEWFETSCQ-PREYKPMASAWYHVTYHRSHYCQESPCFLSFPWIVGDILLQ 1110
Query: 709 IKRFN 723
I+ N
Sbjct: 1111 IRSVN 1115
>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical
proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
2 [Arabidopsis thaliana]
Length = 1133
Score = 228 bits (580), Expect = 5e-57
Identities = 114/242 (47%), Positives = 156/242 (64%), Gaps = 1/242 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM++DTLG+IS AH VHAD++P KARS KCLELA L +AVDFAKTG PAEMPY+L P
Sbjct: 877 VDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKP 936
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
+E+PDF+E+ ++P YIS + GKLYRA K L++ K + YD +LE GF++F
Sbjct: 937 REFPDFLERFEKPTYISESVFGKLYRAVKSSLAQRKPEAESEDT-VAYDVTLEEAGFESF 995
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
+ A + Y KL LM +YG NE E++ G + R+ ++YG MK I +
Sbjct: 996 IETAKAHRDMYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSV 1055
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKR 717
+DL +A WF C+ ++ ASAWY+VTY+PN+ E + LSFPWI +LL+IK
Sbjct: 1056 KDLHKEAMGWFEKSCEDEQQKKKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKA 1115
Query: 718 FN 723
N
Sbjct: 1116 EN 1117
>ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1138
Score = 226 bits (575), Expect = 2e-56
Identities = 118/252 (46%), Positives = 158/252 (62%), Gaps = 2/252 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
VNYML+D+LG ISNAH +HAD++P+KARSP+CL LA L AVDFAKTG PAE+P SL P
Sbjct: 867 VNYMLSDSLGAISNAHLIHADRDPMKARSPECLRLAALHSMAVDFAKTGAPAELPRSLRP 926
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
+E+PDFME+ D+PMYISTG+LGKLYRAA ++ + YD+ LE GF+ F
Sbjct: 927 REFPDFMERWDKPMYISTGVLGKLYRAAVSRMESSHALASQVQSSPTYDRELEVPGFEEF 986
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
L DA Y KL LM + G ++E EM+ G+I +++K+Y MK I + +
Sbjct: 987 LEDADKHYDLYVEKLTTLMNYDGAEHEDEMLTGNIRNRLLYLRKDRKRYSDMKDRIVDSV 1046
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYW--SEGSLLSFPWIKYKLLLNIK 714
L + WF +C K + S ASAWY VTYHP++ + SFPWI LL IK
Sbjct: 1047 NALHEEVRGWFHSCLKAEEEASRVASAWYRVTYHPDHRRPEKKQFWSFPWIICDKLLAIK 1106
Query: 715 RFNETKACQQRE 750
E+K+ ++R+
Sbjct: 1107 ---ESKSNRRRQ 1115
>ref|XP_006286933.1| hypothetical protein CARUB_v10000076mg, partial [Capsella rubella]
gi|482555639|gb|EOA19831.1| hypothetical protein
CARUB_v10000076mg, partial [Capsella rubella]
Length = 1165
Score = 225 bits (573), Expect = 3e-56
Identities = 113/242 (46%), Positives = 155/242 (64%), Gaps = 1/242 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM++DTLG+IS AH +HAD++P KARS KCLELA L +AVDFAKTG PAEMPY+L P
Sbjct: 909 VDYMISDTLGMISTAHLIHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKP 968
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
+E+PDF+E+ ++P YIS + GKLYRA K L++ KK YD +LE GF++F
Sbjct: 969 REFPDFLERFEKPTYISESVFGKLYRAVKSSLAQ-KKPEAETEDTTAYDSTLEEAGFESF 1027
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
+ A I + Y KL LM +YG NE E++ G + R+ ++YG MK I +
Sbjct: 1028 IETAKIHRDMYAEKLTSLMTYYGAVNEEEILTGILKTKEMYLARDNRRYGDMKDRITLSV 1087
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKR 717
++L+ +A WF C ++ ASAWY+VTY+P+ E + LSFPWI +LL IK
Sbjct: 1088 KELQKEAMEWFSKSCNEEQQKKKLASAWYYVTYNPSQVDEKLNFLSFPWIVGDILLKIKA 1147
Query: 718 FN 723
N
Sbjct: 1148 EN 1149
>gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 225 bits (573), Expect = 3e-56
Identities = 110/245 (44%), Positives = 160/245 (65%), Gaps = 3/245 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD+EP KARS CL LA L AVDFAKTG PAEMP +L P
Sbjct: 869 VDYMINDTLGAISTAHLVHADREPYKARSENCLALATLHSMAVDFAKTGAPAEMPRALKP 928
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFM++ ++PMY S+G+LGKLYRA + + + + + YD LE +GF+
Sbjct: 929 REFPDFMQRGNKPMYTSSGVLGKLYRATINSTVQIRSKFVWTKEMAELAYDHDLEVNGFE 988
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
+ ++ A K Y+ ++ LM +Y ++ E E++ G++ ++ +R+ ++YG MK+ I
Sbjct: 989 SLISVAETHKEMYEERMSLLMSYYDVEYEDEILTGNMYNKAQFLLRDNRRYGEMKERIVL 1048
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNI 711
++DL+ +A WF + C + ASAWY+VTYHPNY+ E + LSFPWI +LL I
Sbjct: 1049 SVKDLQREAKEWFKSSCSKADEHQKLASAWYYVTYHPNYFEERMNSLSFPWIVGDILLRI 1108
Query: 712 KRFNE 726
K N+
Sbjct: 1109 KSRNK 1113
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 224 bits (572), Expect = 4e-56
Identities = 118/248 (47%), Positives = 155/248 (62%), Gaps = 3/248 (1%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM+NDTLG IS AH VHAD EP KARS KCL+LA L AVDFAKTG PAEMP L P
Sbjct: 864 VDYMINDTLGAISTAHLVHADCEPDKARSEKCLQLATLHSMAVDFAKTGAPAEMPLYLKP 923
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVI--GRHCGIKYDKSLECDGFQ 354
+E+PDFME+ ++ MYIS G+LGKLYR D + + + + YD+ LE GF+
Sbjct: 924 REFPDFMERAEKQMYISDGVLGKLYRDIHDSTRQERSNFMWSKKIAEATYDQDLEVKGFE 983
Query: 355 AFLNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQE 534
FL A I K +Y K+ LM++YG + E E++ G++ R+ +KYG +K I
Sbjct: 984 DFLGIASIYKEKYMEKMSTLMDYYGAKTEDEILTGNLRHRPTYLQRDNRKYGDVKDRILV 1043
Query: 535 KIRDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNI 711
+++L+ +A WF + C + ASAWYHVTYHP Y+ E + LSFPWI +LLNI
Sbjct: 1044 SLKNLKKEAKEWFESSCN-PTEHQCMASAWYHVTYHPTYFHERMNCLSFPWIVGDILLNI 1102
Query: 712 KRFNETKA 735
K N A
Sbjct: 1103 KSLNSRNA 1110
>ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like [Brachypodium
distachyon]
Length = 1140
Score = 223 bits (568), Expect = 1e-55
Identities = 113/240 (47%), Positives = 149/240 (62%), Gaps = 2/240 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
VNYML+D+LG ISNAH +HAD++P+KARSP+CL+LA L AVDFAKTG PAE+P SL P
Sbjct: 870 VNYMLSDSLGAISNAHLIHADRDPMKARSPECLQLAALHSMAVDFAKTGAPAELPRSLRP 929
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
+E+PDFME+ D+PMYIS G+LGKLYRAA ++ + YD+ L GF+ F
Sbjct: 930 REFPDFMERWDKPMYISNGVLGKLYRAAVSRMESSHALASQVQSSPTYDRELAVPGFEEF 989
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
L DA Y KL LM +YG ++E E++ G+I +++K+Y MK I + +
Sbjct: 990 LEDAEKHYDLYVEKLTTLMNYYGAEHEDEILTGNIRNRLLYLRKDRKRYSDMKDRIFDSV 1049
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYW--SEGSLLSFPWIKYKLLLNIK 714
L + WF NC K + S ASAWY V YHP++ + SFPWI LL IK
Sbjct: 1050 NALHEEVRGWFKNCLKAEEEASRVASAWYRVAYHPDHRRPEKKQFWSFPWIICDKLLAIK 1109
>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 223 bits (568), Expect = 1e-55
Identities = 115/253 (45%), Positives = 160/253 (63%), Gaps = 1/253 (0%)
Frame = +1
Query: 1 VNYMLNDTLGLISNAHSVHADKEPLKARSPKCLELAKLQGKAVDFAKTGVPAEMPYSLFP 180
V+YM++DTLG+IS AH VHAD++P KARS KCLELA L +AVDFAKTG PAEMPY+L P
Sbjct: 878 VDYMISDTLGVISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKP 937
Query: 181 KEYPDFMEKNDRPMYISTGILGKLYRAAKDKLSENKKAVIGRHCGIKYDKSLECDGFQAF 360
+E+PDF+E+ ++P YIS + GKLYRA + L++ K + YD +LE GF++F
Sbjct: 938 REFPDFLERFEKPTYISESVFGKLYRAVRSSLAQRKPEAESDGT-LTYDATLEEAGFESF 996
Query: 361 LNDAMICKMQYDTKLRELMEFYGIQNEGEMIIGSIMKSSKDFIREKKKYGGMKQEIQEKI 540
+ A + Y KL LM +YG NE E++ G + R+ ++YG MK I +
Sbjct: 997 IETAKAHRDMYAEKLTSLMIYYGAVNEEEILTGILKTKEMYLARDNRRYGDMKDRITLSV 1056
Query: 541 RDLRNDAHNWFINCCKVHRKDSAFASAWYHVTYHPNYWSEG-SLLSFPWIKYKLLLNIKR 717
+DL +A WF C+ ++ ASAWY+VTY+P++ E + LSFPWI +LL+IK
Sbjct: 1057 KDLHKEAMGWFDKSCEDEQQKKKLASAWYYVTYNPSHRDEKLTFLSFPWIVGDVLLDIKA 1116
Query: 718 FNETKACQQREAP 756
N + Q E P
Sbjct: 1117 ENAQR--QSGEKP 1127